Citrus Sinensis ID: 043063

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-
Protein Sequence
MEDNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHccccEEEccccccccEEccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHcccccHHHHcccccHHHHHHHHHHHcccHHHHHHHHcccccccccEEEEEccccEEEEcccHHHHHHcccccccEEEccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEcccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccccccHHHHHHcccccccccHHHHHHHHHHHHHcccEEEccccccEEEEEcccHHHHEccccccccHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEEcHHHHccccccccEEEEEcccccccccccEEEccccHHHccHHHHHHHHHHHHHHcccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEccc
Coil and Loop (DISEMBL)
mednecrdggkkgrlantplsasQILTRilpsgggdaENLQRILRLLTNygvfsehrefggerkYSLTEIGKSlvtdaegqsyapYVLQHHQDALMSAWplvheaildptiepfvkvhgeptysyygkmpemnglmrkamsgvsvpfmtsildgydgfkGVKRLVdvggsaginfdlpevvaeapsipgvthiggdmfksipAADAIFMKWVLTTWTDDECKLIMENCYKaipaggkliacepvlpddsnesQRTRALLEGDIFVMTIYRAkgkhmteqefkqlgfsagfphlrlyrvldc
Flexible Loop (DISEMBL)
mednecrdggkkgrlantplsasQILTRilpsgggdaENLQRILRLLTNYGVFsehrefggerkySLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKqlgfsagfphlrlyrvldc
Low Complexity Region (SEG)
MEDNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC
Disordered region (IsUnstruct)
************************ILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL**********RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL**
Disordered Region (DISOPRED)
**DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC
Disordered Region (DISEMBL)
***********KGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC
Disordered Region (DISPRO)
*****CRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	301	2.2.26 [Sep-21-2011]
Q8LL87	350	Caffeic acid 3-O-methyltr	N/A	no	0.840	0.722	0.412	5e-52
Q9FK25	363	Flavone 3'-O-methyltransf	no	no	0.913	0.757	0.382	2e-51
Q6T1F5	365	Caffeic acid 3-O-methyltr	N/A	no	0.890	0.734	0.408	4e-51
Q9XGW0	361	Caffeic acid 3-O-methyltr	N/A	no	0.883	0.736	0.396	5e-51
Q00763	365	Caffeic acid 3-O-methyltr	N/A	no	0.890	0.734	0.398	1e-50
O82054	362	Caffeic acid 3-O-methyltr	N/A	no	0.906	0.754	0.372	1e-50
Q43046	365	Caffeic acid 3-O-methyltr	N/A	no	0.890	0.734	0.395	5e-50
P59049	343	Quercetin 3-O-methyltrans	N/A	no	0.930	0.816	0.363	5e-50
Q9XGV9	361	Caffeic acid 3-O-methyltr	N/A	no	0.903	0.753	0.376	6e-50
Q42653	343	Quercetin 3-O-methyltrans	N/A	no	0.930	0.816	0.363	7e-50

>sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1

 Score =  204 bits (520), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 113/274 (41%), Positives = 155/274 (56%), Gaps = 21/274 (7%)

Query: 40  LQRILRLLTNYGVF----SEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDAL 95
           L RILRLL  Y V     +   + G ER Y L  + K L  +A+G S AP +L +    L
Sbjct: 64  LDRILRLLATYSVLDCKLNNLADGGVERLYGLAPVCKFLTKNADGVSMAPLLLMNQDKVL 123

Query: 96  MSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGY 155
           M +W  + +A+LD  I PF K +G   + Y+G  P  N +  + MS  S   M  IL+ Y
Sbjct: 124 MESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVY 182

Query: 156 DGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKS 200
            GF+G+K +VDVGG  G               INF+LP VV +APS  GV H+GGDMF S
Sbjct: 183 RGFEGLKTVVDVGGGTGATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVS 242

Query: 201 IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE 260
           +P  DAIFMKW+   W+DD C+ +++NCY+A+P  GK+I  E VLP+  + S  T+ ++ 
Sbjct: 243 VPKGDAIFMKWICHDWSDDHCRKLLKNCYQALPDNGKVILAECVLPEAPDTSLATQNVVH 302

Query: 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
            D+ VM  +   GK  TE+EF+ L   AGF   R
Sbjct: 303 VDV-VMLAHNPGGKERTEKEFEALAKGAGFKEFR 335

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.
Coffea canephora (taxid: 49390)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8

>sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1

 Score =  202 bits (515), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 114/298 (38%), Positives = 169/298 (56%), Gaps = 23/298 (7%)

Query: 18  TPLSASQILTRILPSGGGDAE-NLQRILRLLTNYGVFS-EHREFGG---ERKYSLTEIGK 72
           +P+S ++I ++ LP+   +A   L RILRLLT+Y V +  +R+  G   ER Y L  + K
Sbjct: 53  SPMSPTEIASK-LPTKNPEAPVMLDRILRLLTSYSVLTCSNRKLSGDGVERIYGLGPVCK 111

Query: 73  SLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEM 132
            L  + +G S A   L +    LM +W  + +AILD  I PF K +G   + Y+G  P  
Sbjct: 112 YLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNKAYGMSAFEYHGTDPRF 170

Query: 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGS---------------AGINFDL 177
           N +    MS  S   M  IL+ Y GF+G+  LVDVGG                 GINFDL
Sbjct: 171 NKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGINFDL 230

Query: 178 PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK 237
           P V+ +APS PG+ H+GGDMF S+P  DAIFMKW+   W+D+ C   ++NCY+++P  GK
Sbjct: 231 PHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPEDGK 290

Query: 238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
           +I  E +LP+  + S  T+ ++  D  +M  +   GK  TE+EF+ L  ++GF  +++
Sbjct: 291 VILAECILPETPDSSLSTKQVVHVDC-IMLAHNPGGKERTEKEFEALAKASGFKGIKV 347

Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1

 Score =  201 bits (512), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 119/291 (40%), Positives = 161/291 (55%), Gaps = 23/291 (7%)

Query: 20  LSASQILTRILPSGGGDAE-NLQRILRLLTNYGVFS-EHREFGG---ERKYSLTEIGKSL 74
           +S SQ L   LPS   D    L RILRLL +Y V + + R+      ER Y L  + K L
Sbjct: 59  VSPSQ-LAAALPSSQPDTPVMLDRILRLLASYSVLNCKLRDLPDARVERLYGLAPVCKFL 117

Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
             +++G S AP +L +    LM +W  + +A+LD  I PF K +G   + Y+GK P  N 
Sbjct: 118 TKNSDGVSMAPLLLMNQDKILMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGKDPRFNK 176

Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPE 179
           +  + MS  S   M  IL  YDGF G+K +VDVGG  G               INFDLP 
Sbjct: 177 VFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYPNLKGINFDLPH 236

Query: 180 VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239
           VV +APS  GV H+GGDMF S+P  DAIFMKW+   W+D  C   ++NCYKA+P  GK+I
Sbjct: 237 VVEDAPSYAGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPKDGKVI 296

Query: 240 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
             E +LP+  +    T+ ++  D+ +M  +   GK  TE+EF+  G  AGF
Sbjct: 297 LAECILPEAPDSKLTTKNVILIDV-IMLAHNPGGKERTEKEFEAFGKQAGF 346

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ammi majus (taxid: 48026)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1

 Score =  201 bits (511), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/290 (39%), Positives = 158/290 (54%), Gaps = 24/290 (8%)

Query: 26  LTRILPSGGGDAE-NLQRILRLLTNYGVFSEHR-----EFGGERKYSLTEIGKSLVTDAE 79
           L   LP+   DA   L RILRLLT+Y +  E R     + G ER Y L  + K L  + +
Sbjct: 60  LAAQLPTTNPDAHVMLDRILRLLTSYAIL-ECRLKTLPDGGVERLYGLAPVCKFLTKNED 118

Query: 80  GQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKA 139
           G S AP  L +    LM +W  + +A++D  I PF K +G   + Y+G  P  N +  + 
Sbjct: 119 GVSMAPLTLMNQDKVLMESWYHLSDAVVDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNQG 177

Query: 140 MSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEA 184
           MS  S   M  IL+ Y GF G+K +VDVGG  G               INFDLP V+ +A
Sbjct: 178 MSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIVSKYPSIKGINFDLPHVIEDA 237

Query: 185 PSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244
           PS PGV H+GGDMF S+P  DAIFMKW+   W+D+ C   ++NCY A+P  GK+I  E V
Sbjct: 238 PSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYDALPQNGKVILAECV 297

Query: 245 LPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
           LP+  +    T+ ++  D+ +M  +   GK  TE+EF+ L  +AGF    
Sbjct: 298 LPEAPDTGLATKNVVHIDV-IMLAHNPGGKERTEKEFQGLAKAAGFKQFN 346

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q00763|COMT1_POPTM Caffeic acid 3-O-methyltransferase 1 OS=Populus tremuloides GN=OMT1 PE=1 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/291 (39%), Positives = 160/291 (54%), Gaps = 23/291 (7%)

Query: 20  LSASQILTRILPSGGGDAE-NLQRILRLLTNYGVFS----EHREFGGERKYSLTEIGKSL 74
           LS S+I +  LP+   DA   L RILRLL +Y + +    +  +   ER Y L  + K L
Sbjct: 57  LSTSEIASH-LPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
             + +G S +P  L +    LM +W  + +AILD  I PF K +G   + Y+G  P  N 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILDGGI-PFNKAYGMTAFEYHGTDPRFNK 174

Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPE 179
           +  K MS  S   M  IL+ Y GF+G+  LVDVGG  G               INFDLP 
Sbjct: 175 VFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPH 234

Query: 180 VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239
           V+ +APS PGV H+GGDMF S+P ADA+FMKW+   W+D  C   ++NCY A+P  GK+I
Sbjct: 235 VIEDAPSYPGVEHVGGDMFVSVPKADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVI 294

Query: 240 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
             E +LP   + S  T+ ++  D+ +M  +   GK  TE+EF+ L   AGF
Sbjct: 295 LVECILPVAPDTSLATKGVVHVDV-IMLAHNPGGKERTEKEFEGLAKGAGF 344

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus tremuloides (taxid: 3693)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|O82054|COMT1_SACOF Caffeic acid 3-O-methyltransferase OS=Saccharum officinarum GN=COMT PE=2 SV=1

 Score =  199 bits (507), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/295 (37%), Positives = 160/295 (54%), Gaps = 22/295 (7%)

Query: 16  ANTPLSASQILTR--ILPSGGGDAENLQRILRLLTNYGVFS---EHREFGGERKYSLTEI 70
           A   L+  +++ R  + P+    A+ + R+LRLL +Y V     E ++   ER+YS   +
Sbjct: 51  AGKALAPEEVVARLPVAPTNPDAADMVDRMLRLLASYDVVKCQMEDKDGKYERRYSAAPV 110

Query: 71  GKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMP 130
           GK L  + +G S A   L +    LM +W  + +A+LD  I PF K +G   + Y+G  P
Sbjct: 111 GKWLTPNEDGVSMAALTLMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHGTDP 169

Query: 131 EMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGS---------------AGINF 175
             N +  + M   SV     +L+ Y GF+GV  LVDVGG                 GINF
Sbjct: 170 RFNRVFNEGMKNHSVIITKKLLEFYTGFEGVSTLVDVGGGIGATLHAITSHHPQIKGINF 229

Query: 176 DLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAG 235
           DLP V++EAP  PGV H+GGDMFKS+PA DAI MKW+L  W+D  C  +++NCY A+P  
Sbjct: 230 DLPHVISEAPPFPGVQHVGGDMFKSVPAGDAILMKWILHDWSDAHCATLLKNCYDALPEN 289

Query: 236 GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
           GK+I  E VLP ++    + + +   D+ +M  +   G+   E+EF  L   AGF
Sbjct: 290 GKVIIVECVLPVNTEAVPKAQGVFHVDM-IMLAHNPGGRERYEREFHDLAKGAGF 343

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Saccharum officinarum (taxid: 4547)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q43046|COMT1_POPKI Caffeic acid 3-O-methyltransferase 1 OS=Populus kitakamiensis GN=HOMT1 PE=3 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 115/291 (39%), Positives = 160/291 (54%), Gaps = 23/291 (7%)

Query: 20  LSASQILTRILPSGGGDAE-NLQRILRLLTNYGVFS----EHREFGGERKYSLTEIGKSL 74
           LS S+I +  LP+   DA   L RILRLL +Y + +    +  +   ER Y L  + K L
Sbjct: 57  LSTSEIASH-LPTKNPDAPVMLDRILRLLASYSILTCSLKDLPDGKVERLYGLAPVCKFL 115

Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
             + +G S +P  L +    LM +W  + +AIL+  I PF K +G   + Y+G  P  N 
Sbjct: 116 TKNEDGVSVSPLCLMNQDKVLMESWYYLKDAILEGGI-PFNKAYGMTAFEYHGTDPRFNK 174

Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPE 179
           +  K MS  S   M  IL+ Y GF+G+  LVDVGG  G               INFDLP 
Sbjct: 175 VFNKGMSDHSTITMKKILETYKGFEGLTSLVDVGGGTGAVVNTIVSKYPSIKGINFDLPH 234

Query: 180 VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239
           V+ +APS PGV H+GGDMF S+P ADA+FMKW+   W+D  C   ++NCY A+P  GK+I
Sbjct: 235 VIEDAPSYPGVEHVGGDMFVSVPNADAVFMKWICHDWSDAHCLKFLKNCYDALPENGKVI 294

Query: 240 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
             E +LP   + S  T+ ++  D+ +M  +   GK  TE+EF+ L   AGF
Sbjct: 295 LVECILPVAPDTSLATKGVVHVDV-IMLAHNPGGKERTEKEFEGLANGAGF 344

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Populus kitakamiensis (taxid: 34292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|P59049|OMT1_CHRAE Quercetin 3-O-methyltransferase 1 OS=Chrysosplenium americanum GN=OMT1 PE=1 SV=1

 Score =  198 bits (503), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 164/300 (54%), Gaps = 20/300 (6%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENL-QRILRLLTNYGVFS-EHREFGGERKYSLTEIG 71
           R  +T +S ++I +  LP+   DA  +  RILRLL+ Y V +   R    +R Y L  + 
Sbjct: 30  RGQDTCMSPTEIASH-LPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQRVYGLAPVC 88

Query: 72  KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE 131
           K L  + +G S A   L +    LM +W  + +A+LD  I PF K +G  ++ Y+G  P 
Sbjct: 89  KYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMSSFEYHGTDPR 147

Query: 132 MNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFD 176
            N +  + MS  S   M  +   Y GF+G+  LVDVGG  G               INFD
Sbjct: 148 FNKVFNRGMSDHSTITMKKVFQAYQGFQGLTSLVDVGGGTGATLTMILSKYPTIRCINFD 207

Query: 177 LPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGG 236
           LP V+ +AP  PG+ H+GGDMF S+P  DAIFMKW+   W+D+ C  +++NCY A+P  G
Sbjct: 208 LPHVIEDAPEYPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNG 267

Query: 237 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296
           K+I  E +LP+  + S  T+ ++  D+ +   +   GK  TE+EF+ L  +AGF   +++
Sbjct: 268 KVILAECILPEVPDSSLATKGVVHIDV-ITVAHNPGGKERTEKEFEALAKAAGFQGFQVF 326

Methylates OH residues of flavonoid and phenylpropanoid compounds and shows a higher affinity for flavonoid than phenylpropanoid substrates. Substrate preference is quercetin (flavonoid) = luteolin (flavonoid) > 5-hydroxyferulic acid (phenylpropanoid) > caffeic acid (phenylpropanoid) >> apigenin (flavonoid) = kempferol (flavonoid). 3,4-dimethylquercetin is not a substrate.

Chrysosplenium americanum (taxid: 36749)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

>sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1

 Score =  197 bits (502), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 111/295 (37%), Positives = 160/295 (54%), Gaps = 23/295 (7%)

Query: 20  LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR-----EFGGERKYSLTEIGKSL 74
           +S +++  ++L +       L RILRLLT+Y +  E R     + G +R Y L  + K L
Sbjct: 55  VSPAELAAQLLTTNAEAHVMLDRILRLLTSYAIL-ECRLKTLPDGGVQRLYGLAPVCKFL 113

Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
             + +G S AP  L +    LM +W  + +A+LD  I PF K +G   + Y+G  P  N 
Sbjct: 114 TKNEDGVSMAPLALMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNK 172

Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPE 179
           +  + MS  S   M  IL+ Y GF G+K +VDVGG  G               INFDLP 
Sbjct: 173 VFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGTGATLNMIISKYPSIKGINFDLPH 232

Query: 180 VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239
           VV +APS PGV H+GGDMF S+P  DAIFMKW+   W+D  C   ++ CY+A+P  GK+I
Sbjct: 233 VVEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCVKFLKKCYEALPENGKVI 292

Query: 240 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
             E VLP+  +    T+ ++  D+ +M  +   GK  TE+EF+ L  ++GF    
Sbjct: 293 LAECVLPEAPDTGLATKNVVHIDV-IMLAHNPGGKERTEKEFQVLAKASGFKQFN 346

Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins.

Ocimum basilicum (taxid: 39350)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 6

EC: 8

>sp|Q42653|OMT2_CHRAE Quercetin 3-O-methyltransferase 2 OS=Chrysosplenium americanum GN=OMT2 PE=1 SV=1

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 109/300 (36%), Positives = 164/300 (54%), Gaps = 20/300 (6%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENL-QRILRLLTNYGVFS-EHREFGGERKYSLTEIG 71
           R  +T +S ++I +  LP+   DA  +  RILRLL+ Y V +   R    +R Y L  + 
Sbjct: 30  RGQDTCMSPTEIASH-LPTTNPDAPAMVDRILRLLSCYSVVTCSVRSVDDQRVYGLAPVC 88

Query: 72  KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE 131
           K L  + +G S A   L +    LM +W  + +A+LD  I PF K +G  ++ Y+G  P 
Sbjct: 89  KYLTKNQDGVSIAALCLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMSSFEYHGTDPR 147

Query: 132 MNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFD 176
            N +  + MS  S   M  +   Y GF+G+  LVDVGG  G               INFD
Sbjct: 148 FNKVFNRGMSDHSTITMKKVFQTYQGFQGLTSLVDVGGGTGATLTMILSKYPTIRCINFD 207

Query: 177 LPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGG 236
           LP V+ +AP  PG+ H+GGDMF S+P  DAIFMKW+   W+D+ C  +++NCY A+P  G
Sbjct: 208 LPHVIEDAPEYPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKLLKNCYDALPNNG 267

Query: 237 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296
           K+I  E +LP+  + S  T+ ++  D+  +  +   GK  TE+EF+ L  +AGF   +++
Sbjct: 268 KVILAECILPEVPDSSLATKGVVHIDVITVA-HNPGGKERTEKEFEALAKAAGFQGFQVF 326

Methylates OH residues of flavonoid and phenylpropanoid compounds and shows a higher affinity for flavonoid than phenylpropanoid substrates. Substrate preference is quercetin (flavonoid) = luteolin (flavonoid) = 5-hydroxyferulic acid (phenylpropanoid) > caffeic acid (phenylpropanoid) >> apigenin (flavonoid) = kempferol (flavonoid). 3,4-dimethylquercetin is not a substrate.

Chrysosplenium americanum (taxid: 36749)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 7

EC: 6

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
224069629	364	beta-alanine n-methyltransferase related	0.936	0.774	0.732	1e-126
225441106	358	PREDICTED: caffeic acid 3-O-methyltransf	0.933	0.784	0.710	1e-122
147799198	358	hypothetical protein VITISV_030414 [Viti	0.933	0.784	0.707	1e-121
255556786	357	o-methyltransferase, putative [Ricinus c	0.923	0.778	0.704	1e-121
356549592	355	PREDICTED: caffeic acid 3-O-methyltransf	0.936	0.794	0.695	1e-120
15231756	359	putative O-diphenol-O-methyl transferase	0.940	0.788	0.693	1e-118
449440171	409	PREDICTED: caffeic acid 3-O-methyltransf	0.936	0.689	0.655	1e-114
357464631	358	Caffeic acid 3-O-methyltransferase [Medi	0.936	0.787	0.580	1e-101
6688808	358	O-diphenol-O-methyl transferase [Medicag	0.936	0.787	0.577	1e-100
357464627	358	Caffeic acid 3-O-methyltransferase [Medi	0.936	0.787	0.563	3e-97

>gi|224069629|ref|XP_002326388.1| beta-alanine n-methyltransferase related [Populus trichocarpa] gi|222833581|gb|EEE72058.1| beta-alanine n-methyltransferase related [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/307 (73%), Positives = 246/307 (80%), Gaps = 25/307 (8%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--------GGERKYSL 67
           +N PLSASQIL RI  S G D ENLQRILR+LT+YGVF EH             ERKYSL
Sbjct: 48  SNAPLSASQILQRI-ASTGSDPENLQRILRMLTSYGVFEEHLTIESSPLDGSASERKYSL 106

Query: 68  TEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYG 127
           TE+GK+LVTD EG SYAPYVLQHHQDALM AWPLVHEA+LDPT EPFVK +GEP Y YYG
Sbjct: 107 TEVGKTLVTDTEGLSYAPYVLQHHQDALMKAWPLVHEAVLDPTTEPFVKANGEPAYDYYG 166

Query: 128 KMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------- 172
           K PEMN LM KAMSGVSVPFM ++LDGYDGFKGV+RLVDVGGSAG               
Sbjct: 167 KQPEMNELMLKAMSGVSVPFMEAMLDGYDGFKGVERLVDVGGSAGDCLRMILKKHPGVRQ 226

Query: 173 -INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKA 231
            INFDLPEVVA+AP IPGVT++GGDMFKSIP  DAIFMKW+LTTWTD+ECKLIMENCYKA
Sbjct: 227 GINFDLPEVVAKAPIIPGVTNVGGDMFKSIPDGDAIFMKWILTTWTDNECKLIMENCYKA 286

Query: 232 IPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFP 291
           +P GGKLIACEPVLP DS++S RTRALLEGDIFVMTIYRAKGKH TE+EFKQLG S GF 
Sbjct: 287 LPVGGKLIACEPVLPKDSDDSHRTRALLEGDIFVMTIYRAKGKHRTEEEFKQLGQSVGFS 346

Query: 292 HLRLYRV 298
           + R + V
Sbjct: 347 YFRAFYV 353

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441106|ref|XP_002264566.1| PREDICTED: caffeic acid 3-O-methyltransferase [Vitis vinifera]

 Score =  445 bits (1145), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 216/304 (71%), Positives = 248/304 (81%), Gaps = 23/304 (7%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE-----RKYSLTEI 70
           +N PLSASQILTR+LPSG  D  NLQRILRLLT YGVF+EH           RKYSLT+I
Sbjct: 46  SNAPLSASQILTRVLPSG--DPHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDI 103

Query: 71  GKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMP 130
           GK+LVTDA+G SY  YVLQH+Q+ LM+AWPLVHEA++D T EPFVK +GEP YSYYGK P
Sbjct: 104 GKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKP 163

Query: 131 EMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------------IN 174
           EMN LM++AMSGVSVPFM +IL+GY+GF GV+RLVDVGGSAG                IN
Sbjct: 164 EMNDLMQRAMSGVSVPFMKAILNGYNGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGIN 223

Query: 175 FDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPA 234
           FDLPEVVA+AP+IPGVTH+GGDMFKS+P  DAIFMKWVLTTWTD+ECKLIM+NCY A+P 
Sbjct: 224 FDLPEVVAKAPNIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPV 283

Query: 235 GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
           GGK+IACEPVLP +S+ S RTRALLEGDIFVMTIYRAKGKH TE+EF+QLG SAGFPHLR
Sbjct: 284 GGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLSAGFPHLR 343

Query: 295 LYRV 298
            + +
Sbjct: 344 AFYI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147799198|emb|CAN65776.1| hypothetical protein VITISV_030414 [Vitis vinifera]

 Score =  442 bits (1136), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 215/304 (70%), Positives = 246/304 (80%), Gaps = 23/304 (7%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE-----RKYSLTEI 70
           +N PLSASQILTR+LPSG  D  NLQRILRLLT YGVF+EH           RKYSLT+I
Sbjct: 46  SNAPLSASQILTRVLPSG--DPHNLQRILRLLTTYGVFAEHLLTDPSSDQVLRKYSLTDI 103

Query: 71  GKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMP 130
           GK+LVTDA+G SY  YVLQH+Q+ LM+AWPLVHEA++D T EPFVK +GEP YSYYGK P
Sbjct: 104 GKTLVTDADGLSYGAYVLQHYQEELMTAWPLVHEAVVDSTTEPFVKANGEPAYSYYGKKP 163

Query: 131 EMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------------IN 174
           EMN LM++AMSGVSVPFM +IL+GY GF GV+RLVDVGGSAG                IN
Sbjct: 164 EMNDLMQRAMSGVSVPFMKAILNGYSGFDGVQRLVDVGGSAGDCLRMILQKHTNIKEGIN 223

Query: 175 FDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPA 234
           FDLPEVVA+AP+IPGVTH+GGDMFKS+P  DAIFMKWVLTTWTD+ECKLIM+NCY A+P 
Sbjct: 224 FDLPEVVAKAPTIPGVTHVGGDMFKSVPDGDAIFMKWVLTTWTDEECKLIMKNCYNALPV 283

Query: 235 GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
           GGK+IACEPVLP +S+ S RTRALLEGDIFVMTIYRAKGKH TE+EF+QLG SAGFPHL 
Sbjct: 284 GGKMIACEPVLPKESDNSLRTRALLEGDIFVMTIYRAKGKHRTEEEFRQLGLSAGFPHLX 343

Query: 295 LYRV 298
            + +
Sbjct: 344 AFYI 347

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556786|ref|XP_002519426.1| o-methyltransferase, putative [Ricinus communis] gi|223541289|gb|EEF42840.1| o-methyltransferase, putative [Ricinus communis]

 Score =  440 bits (1131), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 210/298 (70%), Positives = 246/298 (82%), Gaps = 20/298 (6%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR---EFGGERKYSLTEIGK 72
            N+PLSAS+IL+RI  SGG D +NLQRILR+L++Y VF+EH    +   ER+YSLTEIGK
Sbjct: 46  VNSPLSASEILSRINLSGG-DPDNLQRILRMLSSYNVFTEHLSAVDGVTERRYSLTEIGK 104

Query: 73  SLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEM 132
           +LVTD  G SY  YVLQHHQDALM AWPLVHEA+LD T EPF K +GEP Y YYGK PEM
Sbjct: 105 TLVTDVNGLSYGAYVLQHHQDALMRAWPLVHEAVLDSTTEPFAKANGEPAYDYYGKRPEM 164

Query: 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------------INFD 176
           N LM+KAMSG+SVPFM ++L+GYDGF+GV+++VDVGGSAG                INFD
Sbjct: 165 NELMQKAMSGLSVPFMKAVLNGYDGFQGVEKIVDVGGSAGDCLKTILQKYPNVREGINFD 224

Query: 177 LPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGG 236
           LPEVVA+AP+IPGVTH+GGDMFKS+P+ADAIFMKW+LTTWTDDECK+IMENCYKA+P GG
Sbjct: 225 LPEVVAKAPNIPGVTHVGGDMFKSVPSADAIFMKWILTTWTDDECKVIMENCYKALPVGG 284

Query: 237 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
           KLIACEPVLP+ +++S RTRALLEGDIFVMTIYRAKGKH TE+EFK+LG S GF H R
Sbjct: 285 KLIACEPVLPNQTDDSHRTRALLEGDIFVMTIYRAKGKHRTEEEFKKLGHSVGFSHFR 342

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549592|ref|XP_003543176.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Glycine max]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/299 (69%), Positives = 244/299 (81%), Gaps = 17/299 (5%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75
           AN PLSA++IL R+LP+GGGDAENLQR+LR+L +YGVF EH    GERKYSLT++GK+LV
Sbjct: 47  ANNPLSAAEILPRLLPAGGGDAENLQRLLRMLASYGVFYEHLS-AGERKYSLTDVGKTLV 105

Query: 76  TDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGL 135
           TD +G SYA YVLQHHQDALM AWP+VHEA++DPT EPF + +GEP Y YY K PEMN L
Sbjct: 106 TDEQGLSYAHYVLQHHQDALMRAWPMVHEAVVDPTKEPFERANGEPAYGYYLKHPEMNDL 165

Query: 136 MRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------------INFDLPE 179
           M +AMSGVSVPF+ ++L+GYDGF+GV++LVDVGGS G                INFDLPE
Sbjct: 166 MVRAMSGVSVPFIRAMLEGYDGFQGVEKLVDVGGSGGDCLRMILEKHPTIKEGINFDLPE 225

Query: 180 VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239
           VVA+AP IP VTH+GGDMFK IP  DAIFMKWVLTTWTD+ECK IM+NC+KA+P GGKLI
Sbjct: 226 VVAKAPQIPFVTHVGGDMFKFIPQGDAIFMKWVLTTWTDEECKHIMQNCHKALPEGGKLI 285

Query: 240 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
           ACEPVLP+DS+ES RTRALLEGDIFVMTIYRAKGKH TE++F+QL   AGFP  R + V
Sbjct: 286 ACEPVLPEDSDESHRTRALLEGDIFVMTIYRAKGKHRTEEQFRQLAIDAGFPRFRAFHV 344

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231756|ref|NP_190882.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana] gi|14194165|gb|AAK56277.1|AF367289_1 AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|6630734|emb|CAB64217.1| caffeic acid O-methyltransferase-like protein [Arabidopsis thaliana] gi|22137206|gb|AAM91448.1| AT3g53140/T4D2_70 [Arabidopsis thaliana] gi|332645520|gb|AEE79041.1| putative O-diphenol-O-methyl transferase [Arabidopsis thaliana]

 Score =  429 bits (1102), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 210/303 (69%), Positives = 245/303 (80%), Gaps = 20/303 (6%)

Query: 16  ANTPLSASQILTRI-LPSG---GGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG 71
           AN+PLSA++IL R+ LPS    GGD ENLQRILR+LT+YGVFSEH     ERKYSLT++G
Sbjct: 46  ANSPLSAAEILPRLHLPSHTTIGGDPENLQRILRMLTSYGVFSEHLVGSIERKYSLTDVG 105

Query: 72  KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE 131
           K+LVTD+ G SYA YVLQHHQ+ALM AWPLVH A+++P  EP+VK +GE  Y+ YGK  E
Sbjct: 106 KTLVTDSGGLSYAAYVLQHHQEALMRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEE 165

Query: 132 MNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------------INF 175
           MNGLM+KAMSGVSVPFM +ILDGYDGFK V  LVDVGGSAG                INF
Sbjct: 166 MNGLMQKAMSGVSVPFMKAILDGYDGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINF 225

Query: 176 DLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAG 235
           DLPEVVA+AP+IPGVTH+GGDMF+S+P+ADAIFMKWVLTTWTD+ECK IM+NCY A+P G
Sbjct: 226 DLPEVVAKAPNIPGVTHVGGDMFQSVPSADAIFMKWVLTTWTDEECKQIMKNCYNALPVG 285

Query: 236 GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
           GKLIACEPVLP +++ES RTRALLEGDIFVMTIYR KGKH TE+EF +LG SAGFP  R 
Sbjct: 286 GKLIACEPVLPKETDESHRTRALLEGDIFVMTIYRTKGKHRTEEEFIELGLSAGFPTFRP 345

Query: 296 YRV 298
           + +
Sbjct: 346 FYI 348

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449440171|ref|XP_004137858.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus] gi|449524758|ref|XP_004169388.1| PREDICTED: caffeic acid 3-O-methyltransferase-like [Cucumis sativus]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/302 (65%), Positives = 241/302 (79%), Gaps = 20/302 (6%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHRE-FGGERKYSLTEIGKSL 74
           +N+PLSAS+IL R++PSGG DA NL+RILR+LT+YGVF EH        +YSLT++GK+L
Sbjct: 98  SNSPLSASEILARVVPSGG-DAHNLERILRMLTSYGVFEEHLSPNSSNHRYSLTDVGKTL 156

Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
           VTD++G SYAPYVLQHHQDALM AWP VHEA +D T EPFV+ +GE  YSYYGK  EMN 
Sbjct: 157 VTDSDGLSYAPYVLQHHQDALMRAWPRVHEAAIDSTTEPFVRANGEAAYSYYGKKTEMNE 216

Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSA----------------GINFDLP 178
           LM++AM+GVSVPFM ++LDGYDGFKGV++LVDVGGSA                GINFDLP
Sbjct: 217 LMQRAMAGVSVPFMKAVLDGYDGFKGVEKLVDVGGSAGDCLRMILQKYPHIKEGINFDLP 276

Query: 179 EVVAEAPSIP--GVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGG 236
           EVVA AP+IP  GV+H+GGDMFKSIP  DAIFMKWVL+TWTDDECK+I+ENC K++P GG
Sbjct: 277 EVVARAPTIPETGVSHVGGDMFKSIPTGDAIFMKWVLSTWTDDECKIILENCCKSLPVGG 336

Query: 237 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296
           KLIACEP LP+ ++ES RTRALL  D+F+MTIY+AK K  TE++F+QLG SAGF  LR +
Sbjct: 337 KLIACEPTLPEKTDESHRTRALLASDVFIMTIYKAKSKQRTEEQFRQLGLSAGFSALRPF 396

Query: 297 RV 298
            +
Sbjct: 397 HI 398

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464631|ref|XP_003602597.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|355491645|gb|AES72848.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 173/298 (58%), Positives = 222/298 (74%), Gaps = 16/298 (5%)

Query: 17  NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76
           NTPLSASQIL+ + P+GGGDAENLQRILRLLT Y +F+E     G+RKYSLTE+GK+LV 
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYAIFAEDLSSNGKRKYSLTEVGKALVP 109

Query: 77  DAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLM 136
           D +G SY  YVLQH+QD  + AWPLV EA+ DPT+EPF K+HGE  Y+Y  K P+   L 
Sbjct: 110 DDDGLSYGTYVLQHYQDQYLRAWPLVGEAVEDPTVEPFEKLHGEGAYAYCMKRPDEMSLF 169

Query: 137 RKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSA----------------GINFDLPEV 180
             +MSG+S+P M  +L+ YDGFKGV+ LVDVGG++                GINFDLP++
Sbjct: 170 YASMSGMSMPHMNEMLEKYDGFKGVESLVDVGGNSGVILNMIMNKYPNILKGINFDLPDM 229

Query: 181 VAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA 240
           ++ AP +PG+TH+GGD  + +PA DAIF KW + TWTD+ECK +++NCYKA+P  GKLI 
Sbjct: 230 ISSAPQLPGITHVGGDALELVPAGDAIFTKWTMLTWTDEECKKVLQNCYKALPVNGKLIV 289

Query: 241 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
           CEPV P+ ++ESQRTRALL GDIF+MT+Y+ KGKH TE++FKQLG SAGF   R + +
Sbjct: 290 CEPVSPELTDESQRTRALLSGDIFIMTMYKTKGKHRTEEQFKQLGISAGFLRFRAFHI 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6688808|emb|CAB65279.1| O-diphenol-O-methyl transferase [Medicago sativa subsp. x varia]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 172/298 (57%), Positives = 222/298 (74%), Gaps = 16/298 (5%)

Query: 17  NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76
           NTPLSASQIL+ + P+GGGDAENLQRILRLLT Y +F+E     G+RKYSLT+IGK+LV 
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYAIFAEDLSSNGKRKYSLTDIGKALVP 109

Query: 77  DAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLM 136
           D +G SYA YVLQH+QD  + AWPLV +A+ D ++EPF K+HGE  Y+Y  K P+   L 
Sbjct: 110 DDDGLSYATYVLQHYQDQYLRAWPLVGDAVEDASVEPFEKLHGEGAYAYCMKRPDEMSLF 169

Query: 137 RKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSA----------------GINFDLPEV 180
             +MSG+S+P M  +L+ YDGFKGV+ LVDVGG++                GINFDLP++
Sbjct: 170 YASMSGLSMPHMNEMLEKYDGFKGVETLVDVGGNSGVILNMIMNKYPNILKGINFDLPDM 229

Query: 181 VAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA 240
           ++ AP +PG+TH+GGD  +S+PA DAIF KW + TWTD+ECK +++NCYKA+P  GKLI 
Sbjct: 230 ISSAPQLPGITHVGGDALESVPAGDAIFTKWTMLTWTDEECKKVLQNCYKALPVNGKLIV 289

Query: 241 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
           CEPV P+ ++ESQRTRALL GDIF+MT+YR KGKH TE++FKQLG S GF   R + +
Sbjct: 290 CEPVSPELTDESQRTRALLSGDIFIMTMYRTKGKHRTEEQFKQLGISTGFLRFRAFHI 347

Source: Medicago sativa subsp. x varia

Species: Medicago sativa

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464627|ref|XP_003602595.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|217072478|gb|ACJ84599.1| unknown [Medicago truncatula] gi|355491643|gb|AES72846.1| Caffeic acid 3-O-methyltransferase [Medicago truncatula] gi|388498338|gb|AFK37235.1| unknown [Medicago truncatula]

 Score =  361 bits (926), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 168/298 (56%), Positives = 219/298 (73%), Gaps = 16/298 (5%)

Query: 17  NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT 76
           NTPLSASQIL+ + P+GGGDAENLQRILRLLT Y +F E     GERKYSLT++GK+LV 
Sbjct: 50  NTPLSASQILSIVRPNGGGDAENLQRILRLLTTYTIFVEDLSSNGERKYSLTDVGKALVP 109

Query: 77  DAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLM 136
           D  G + A + +QHHQD  + AWPLV +A+ DPT+EPF K+HGE  Y+Y  K PE   L 
Sbjct: 110 DDHGLTCASFFVQHHQDPYLRAWPLVGDAVEDPTVEPFEKLHGEAAYAYCTKGPEEMSLF 169

Query: 137 RKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSA----------------GINFDLPEV 180
             +MSG+S+P+M  +L+ YDGFKGV+ LVDVGG++                GINFDLP++
Sbjct: 170 YASMSGMSLPYMREMLENYDGFKGVETLVDVGGNSGVSLNMIMNKYPNILKGINFDLPDM 229

Query: 181 VAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA 240
           ++ AP  PG+TH+GGD  +S+PA DAIF+KW + TWTD+E K  +++CYKA+P  GKLI 
Sbjct: 230 ISSAPQYPGITHVGGDALESVPAGDAIFIKWTVLTWTDEEFKKALQSCYKALPVAGKLIL 289

Query: 241 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
           CEPVLP+ ++ES+RTRALL  DI++MT+YR KGKH TE++FKQLG SAGF   R + +
Sbjct: 290 CEPVLPEQTDESKRTRALLAADIWIMTMYRTKGKHRTEEQFKQLGISAGFKSFRAFHI 347

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	301
TAIR|locus:2102038	359	AT3G53140 [Arabidopsis thalian	0.880	0.738	0.704	4.1e-104
TAIR|locus:2153423	363	OMT1 "AT5G54160" [Arabidopsis	0.777	0.644	0.386	4.5e-43
UNIPROTKB|Q84N28	360	OMT1 "Flavone O-methyltransfer	0.930	0.777	0.318	2.2e-41
UNIPROTKB|Q6ZD89	368	ROMT-9 "Flavone 3'-O-methyltra	0.930	0.760	0.334	3.6e-41
TAIR|locus:2034016	363	AT1G51990 [Arabidopsis thalian	0.770	0.639	0.376	3.4e-38
UNIPROTKB|P93324	372	P93324 "Isoliquiritigenin 2'-O	0.754	0.610	0.362	7e-38
TAIR|locus:2038026	352	AT1G33030 [Arabidopsis thalian	0.760	0.650	0.326	5.8e-34
UNIPROTKB|A8QW52	376	EOMT "Eugenol O-methyltransfer	0.754	0.603	0.337	9.5e-34
TAIR|locus:2204680	381	AT1G77520 [Arabidopsis thalian	0.754	0.595	0.329	6.7e-33
TAIR|locus:2204695	381	AT1G77530 [Arabidopsis thalian	0.754	0.595	0.329	6.7e-33

TAIR|locus:2102038 AT3G53140 [Arabidopsis thaliana (taxid:3702)]

 Score = 1031 (368.0 bits), Expect = 4.1e-104, P = 4.1e-104
 Identities = 198/281 (70%), Positives = 229/281 (81%)

Query:    34 GGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQD 93
             GGD ENLQRILR+LT+YGVFSEH     ERKYSLT++GK+LVTD+ G SYA YVLQHHQ+
Sbjct:    68 GGDPENLQRILRMLTSYGVFSEHLVGSIERKYSLTDVGKTLVTDSGGLSYAAYVLQHHQE 127

Query:    94 ALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILD 153
             ALM AWPLVH A+++P  EP+VK +GE  Y+ YGK  EMNGLM+KAMSGVSVPFM +ILD
Sbjct:   128 ALMRAWPLVHTAVVEPETEPYVKANGEAAYAQYGKSEEMNGLMQKAMSGVSVPFMKAILD 187

Query:   154 GYDGFKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDM 197
             GYDGFK V  LVDVGGSAG                INFDLPEVVA+AP+IPGVTH+GGDM
Sbjct:   188 GYDGFKSVDILVDVGGSAGDCLRMILQQFPNVREGINFDLPEVVAKAPNIPGVTHVGGDM 247

Query:   198 FKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA 257
             F+S+P+ADAIFMKWVLTTWTD+ECK IM+NCY A+P GGKLIACEPVLP +++ES RTRA
Sbjct:   248 FQSVPSADAIFMKWVLTTWTDEECKQIMKNCYNALPVGGKLIACEPVLPKETDESHRTRA 307

Query:   258 LLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
             LLEGDIFVMTIYR KGKH TE+EF +LG SAGFP  R + +
Sbjct:   308 LLEGDIFVMTIYRTKGKHRTEEEFIELGLSAGFPTFRPFYI 348

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 97/251 (38%), Positives = 140/251 (55%)

Query:    60 GGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG 119
             G ER Y L  + K L  + +G S A   L +    LM +W  + +AILD  I PF K +G
Sbjct:    99 GVERIYGLGPVCKYLTKNEDGVSIAALCLMNQDKVLMESWYHLKDAILDGGI-PFNKAYG 157

Query:   120 EPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG------- 172
                + Y+G  P  N +    MS  S   M  IL+ Y GF+G+  LVDVGG  G       
Sbjct:   158 MSAFEYHGTDPRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIV 217

Query:   173 --------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLI 224
                     INFDLP V+ +APS PG+ H+GGDMF S+P  DAIFMKW+   W+D+ C   
Sbjct:   218 SKYPNLKGINFDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKF 277

Query:   225 MENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284
             ++NCY+++P  GK+I  E +LP+  + S  T+ ++  D  +M  +   GK  TE+EF+ L
Sbjct:   278 LKNCYESLPEDGKVILAECILPETPDSSLSTKQVVHVDC-IMLAHNPGGKERTEKEFEAL 336

Query:   285 GFSAGFPHLRL 295
               ++GF  +++
Sbjct:   337 AKASGFKGIKV 347

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0030755 "quercetin 3-O-methyltransferase activity" evidence=IDA

GO:0033799 "myricetin 3'-O-methyltransferase activity" evidence=IDA

GO:0047763 "caffeate O-methyltransferase activity" evidence=ISS;IMP

GO:0051555 "flavonol biosynthetic process" evidence=IDA

GO:0009809 "lignin biosynthetic process" evidence=IMP

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009805 "coumarin biosynthetic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 95/298 (31%), Positives = 154/298 (51%)

Query:    13 GRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGG-ERKYSLTEIG 71
             G+L      A+++ +   P+     + + R+L          E  + G   R+Y    + 
Sbjct:    50 GKLLTPAEVAAKLPSTANPAAADMVDRMLRLLASYNVVSCTMEEGKDGRLSRRYRAAPVC 109

Query:    72 KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE 131
             K L  + +G S A   L +    LM +W  + +A+LD  I PF K +G   + Y+G  P 
Sbjct:   110 KFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPR 168

Query:   132 MNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFD 176
              N +  + M   S+     +L+ Y GF+G+  +VDVGG  G               INFD
Sbjct:   169 FNRVFNEGMKNHSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGINFD 228

Query:   177 LPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGG 236
             LP V++EA   PGVTH+GGDMF+ +P+ DAI MKW+L  W+D+ C  +++NCY A+PA G
Sbjct:   229 LPHVISEAQPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPAHG 288

Query:   237 KLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR 294
             K++  E +LP +   + + + +   D+ +M  +   G+   E+EF+ L   AGF  ++
Sbjct:   289 KVVLVECILPVNPEATPKAQGVFHVDM-IMLAHNPGGRERYEREFEALAKGAGFKAIK 345

GO:0009611 "response to wounding" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IDA

GO:0009751 "response to salicylic acid stimulus" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IDA

UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 100/299 (33%), Positives = 151/299 (50%)

Query:     9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGG-ERKYSL 67
             GG K  L      A ++ ++  P+     + + R+L          E    G   R+Y+ 
Sbjct:    53 GGGKAALLTPAEVADKLPSKANPAAADMVDRMLRLLASYNVVRCEMEEGADGKLSRRYAA 112

Query:    68 TEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYG 127
               + K L  + +G S A   L +    LM +W  + +A+LD  I PF K +G   + Y+G
Sbjct:   113 APVCKWLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMTAFEYHG 171

Query:   128 KMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------- 172
                  N +  + M   SV     +LD Y GF     +VDVGG  G               
Sbjct:   172 TDARFNRVFNEGMKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRG 231

Query:   173 INFDLPEVVAEAPSIPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMENCYKA 231
             IN+DLP V++EAP  PGV H+GGDMF S+P   DAI MKW+L  W+D+ C  +++NCY A
Sbjct:   232 INYDLPHVISEAPPFPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDA 291

Query:   232 IPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
             +P  GK++  E VLP+ S+ + R + +   D+ +M  +   GK   E+EF++L  +AGF
Sbjct:   292 LPEHGKVVVVECVLPESSDATAREQGVFHVDM-IMLAHNPGGKERYEREFRELARAAGF 349

GO:0030744 "luteolin O-methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)]

 Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
 Identities = 94/250 (37%), Positives = 136/250 (54%)

Query:    58 EFGGE-RKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVK 116
             E G E R Y L ++GK L+ D +G S APYVL     A    W  + EAI +     + +
Sbjct:    95 EEGRESRAYGLGKVGKKLIKDEDGFSIAPYVLAGCTKAKGGVWSYLTEAIQEGGASAWER 154

Query:   117 VHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---- 172
              +    + Y  K   +  +  ++M+  +   M  IL+ Y GF+GV   VDVGGS G    
Sbjct:   155 ANEALIFEYMKKNENLKKIFNESMTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLA 214

Query:   173 -----------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 221
                        INFDLP +V EAP I GV HIGGDMF  IP  + I MKW+L  W D++C
Sbjct:   215 QILSKYPHIKGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKC 274

Query:   222 KLIMENCYKAIPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHMTEQE 280
               I++NC KA+P  G++I  E ++P + +E+   T+  L  D+ +M++  + GK  T++E
Sbjct:   275 VEILKNCKKALPETGRIIVIEMIVPREVSETDLATKNSLSADLTMMSL-TSGGKERTKKE 333

Query:   281 FKQLGFSAGF 290
             F+ L   AGF
Sbjct:   334 FEDLAKEAGF 343

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

UNIPROTKB|P93324 P93324 "Isoliquiritigenin 2'-O-methyltransferase" [Medicago sativa (taxid:3879)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 90/248 (36%), Positives = 139/248 (56%)

Query:    60 GGERKYSLTEIGKSLVTDAEGQSY-APYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVH 118
             G ER Y L+ +GK LV D E + Y A +       AL+  W    EA++D  I+ F  VH
Sbjct:   109 GAERVYGLSMVGKYLVPD-ESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVH 167

Query:   119 GEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG------ 172
             G   Y + GK  +MN +  K+M  V    M  +L+ Y GF+G+  LVDVGG +G      
Sbjct:   168 GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELI 227

Query:   173 ---------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL 223
                      INFDLP+V+  AP + G+ H+GGDMF S+P  DA+ +K V   W+D++C  
Sbjct:   228 ISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIE 287

Query:   224 IMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGD-IFVMTIYRAKGKHMTEQEFK 282
              + NC+KA+   GK+I  E +LP++ N S+ ++ +   D +  +T+    G+  TE++++
Sbjct:   288 FLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITV---GGRERTEKQYE 344

Query:   283 QLGFSAGF 290
             +L   +GF
Sbjct:   345 KLSKLSGF 352

GO:0030751 "licodione 2'-O-methyltransferase activity" evidence=IDA

GO:0033802 "isoliquiritigenin 2'-O-methyltransferase activity" evidence=IDA

TAIR|locus:2038026 AT1G33030 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 81/248 (32%), Positives = 128/248 (51%)

Query:    65 YSLTEIGKSLVTDAEGQ-SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTY 123
             Y L  + K    +  G  S AP V       +   W  + +++L+  + PF   HG    
Sbjct:    91 YGLAPVAKYFTKNQNGGGSLAPMVNLFQDKVVTDMWYNLKDSVLEGGL-PFNNTHGSSAV 149

Query:   124 SYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------- 172
                G       + + +M G +  F+   L  Y+GF GVK LVDVGG  G           
Sbjct:   150 ELVGSDSRFREVFQSSMKGFNEVFIEEFLKNYNGFDGVKSLVDVGGGDGSLLSRIISKHT 209

Query:   173 -----INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 227
                  INFDLP V+  +   PG+ H+ GDMF + P  +AIFMKW+L +W DD C  I+ N
Sbjct:   210 HIIKAINFDLPTVINTSLPSPGIEHVAGDMFTNTPKGEAIFMKWMLHSWDDDHCVKILSN 269

Query:   228 CYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287
             CY+++P+ GK+I  + V+P+   ++   R+L + ++F+M +    GK  T++EF+ L   
Sbjct:   270 CYQSLPSNGKVIVVDMVIPEFPGDTLLDRSLFQFELFMMNM-NPSGKERTKKEFEILARL 328

Query:   288 AGFPHLRL 295
             AGF ++++
Sbjct:   329 AGFSNVQV 336

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005829 "cytosol" evidence=IDA;TAS

GO:0009809 "lignin biosynthetic process" evidence=ISS

UNIPROTKB|A8QW52 EOMT "Eugenol O-methyltransferase" [Sorghum bicolor (taxid:4558)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 82/243 (33%), Positives = 122/243 (50%)

Query:    63 RKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPT 122
             R+Y+   + K        +S  P          M  W  + + +L     PF K +G P 
Sbjct:   115 RRYAAAPVCKWFARGGGVESVVPMGFWMTSTTNMETWHNIKDGVLAGET-PFDKAYGMPV 173

Query:   123 YSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGS------------ 170
             + Y G    MN L  +AM+  S+     +L+ + GF+    LVDVGG             
Sbjct:   174 FEYLGANGTMNTLFNEAMASHSMIITKRLLEVFRGFENYSVLVDVGGGNGTTMQMIRSQY 233

Query:   171 ---AGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMEN 227
                +GIN+DLP V+A+A  I GV H+ G+MF +IP  DAI +KW+L  W D EC  I++N
Sbjct:   234 ENISGINYDLPHVIAQASPIEGVEHVAGNMFDNIPRGDAIILKWILHNWGDKECVKILKN 293

Query:   228 CYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS 287
             CY A+P  G +I  E +LP+   E+  ++   + D+ +M  + A GK  TE+E  +L   
Sbjct:   294 CYTALPVNGTVIILEYILPETPEETLASQLAFDFDLGMMLFFGASGKERTEKELLELARE 353

Query:   288 AGF 290
             AGF
Sbjct:   354 AGF 356

GO:0008171 "O-methyltransferase activity" evidence=IDA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=IDA

GO:0032259 "methylation" evidence=IDA

TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 81/246 (32%), Positives = 123/246 (50%)

Query:    62 ERKYSLTEIGKSLVTDAEGQ-SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGE 120
             ER Y+   + K  + D++G  S  P  +  H       W  + + IL+   + F   HG 
Sbjct:   119 ERVYAAEPVCKYFLRDSDGTGSLVPLFMLLHTQVFFKTWTNLKDVILEGR-DAFNSAHGM 177

Query:   121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGS---------- 170
               + Y         L  +AMS  S   M  +LD Y GF+ V  LVDVGG           
Sbjct:   178 KIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGTVLGLVTS 237

Query:   171 -----AGINFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM 225
                   G+NFDL +V+ +AP  PGV H+ GDMF  +P  DA+FMKW+L  W D++C  I+
Sbjct:   238 KYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGDEDCIKIL 297

Query:   226 ENCYKAIPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284
             +NC+K++P  GK+I  E V P +       +  +   D+ ++T   + GK  +  +F+ L
Sbjct:   298 KNCWKSLPEKGKIIIVEFVTPKEPKGGDLSSNTVFAMDLLMLT-QCSGGKERSLSQFENL 356

Query:   285 GFSAGF 290
              F++GF
Sbjct:   357 AFASGF 362

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 81/246 (32%), Positives = 129/246 (52%)

Query:    62 ERKYSLTEIGKSLVTDAEGQ-SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGE 120
             ER Y+   I K  + D++G  S +  +L  H   ++  W  + + IL+   + F   H  
Sbjct:   119 ERVYAAEPICKYFLKDSDGSGSLSSLLLLLHSQVILKTWTNLKDVILEGK-DAFSSAHDM 177

Query:   121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG-------- 172
               + Y     + + L  +AMS  S   M  +L+ Y GF+ V  LVDVGG  G        
Sbjct:   178 RLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGTILGLITS 237

Query:   173 -------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM 225
                    +NFDL +V+ +AP  PGV H+ GDMF  +P  DAIFMKW+L  W D++C  I+
Sbjct:   238 KYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGDEDCIKIL 297

Query:   226 ENCYKAIPAGGKLIACEPVLPDDSNESQRT-RALLEGDIFVMTIYRAKGKHMTEQEFKQL 284
             +NC+K++P  GK+I  E + P +   +  +   +L  D+ ++T   + GK  +  +F+ L
Sbjct:   298 KNCWKSLPEKGKVIIVEMITPMEPKPNDFSCNTVLGMDLLMLT-QCSGGKERSLSQFENL 356

Query:   285 GFSAGF 290
              F++GF
Sbjct:   357 AFASGF 362

GO:0005634 "nucleus" evidence=ISM

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008171 "O-methyltransferase activity" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009809 "lignin biosynthetic process" evidence=ISS

GO:0005829 "cytosol" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.766

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	301
pfam00891	239	pfam00891, Methyltransf_2, O-methyltransferase	2e-68
TIGR02716	306	TIGR02716, C20_methyl_CrtF, C-20 methyltransferase	0.003

>gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase

 Score =  212 bits (543), Expect = 2e-68
 Identities = 90/239 (37%), Positives = 131/239 (54%), Gaps = 19/239 (7%)

Query: 61  GERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGE 120
           G   Y LT   K LV   +  S AP +L +    L+ +W  + +A+ +    PF +  G 
Sbjct: 3   GGEDYGLTPASKLLVKGEDSPSLAPLLLMYADPTLLESWAHLKDAVREGGP-PFERAFGM 61

Query: 121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG-------- 172
           P + Y G  PE N +  +AM+  S   M  IL+    F G+  LVDVGG  G        
Sbjct: 62  PFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVR 121

Query: 173 -------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM 225
                  I FDLP V+A+APS   V  +GGD F+S+P ADAI +KWVL  W+D++C  I+
Sbjct: 122 AYPHIKGIVFDLPHVIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKIL 181

Query: 226 ENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284
           + CY+A+P GGK+I  E VLP+D ++   T  LL  D+ ++ +    GK  TE+E+++L
Sbjct: 182 KRCYEALPPGGKVIVVEMVLPEDPDDDLETEVLL-LDLNMLVL--NGGKERTEKEWRKL 237

This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239

>gnl|CDD|131763 TIGR02716, C20_methyl_CrtF, C-20 methyltransferase BchU

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 34/201 (16%), Positives = 66/201 (32%), Gaps = 51/201 (25%)

Query: 98  AW---PLVHEAILDP------TIEPFVKVHGEPTYSYYGKMPEM---------------- 132
            W                      P  K        +Y  + +                 
Sbjct: 59  KWSLTEFADYMFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQKNFKGQVPYPPV 118

Query: 133 ---NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------IN 174
              + L  + +   +  F   +L       GVK+++DVGG  G                 
Sbjct: 119 TREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHFPELDSTI 178

Query: 175 FDLP---EVVAEAPSIPG----VTHIGGDMFKS-IPAADAIFMKWVLTTWTDDECKLIME 226
            +LP   ++V E  +  G    +  I  D++K   P ADA+    +L +  +    ++ +
Sbjct: 179 LNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCK 238

Query: 227 NCYKAIPAGGKLIACEPVLPD 247
             + A+ +GG+L+  + V+ D
Sbjct: 239 KAFDAMRSGGRLLILDMVIDD 259

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	301
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	100.0
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	100.0
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	100.0
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.56
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.53
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.53
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.52
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.5
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.47
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.44
PLN02244	340	tocopherol O-methyltransferase	99.42
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.42
PLN02336	475	phosphoethanolamine N-methyltransferase	99.4
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.4
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.35
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.34
PLN02490	340	MPBQ/MSBQ methyltransferase	99.34
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.32
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.31
PRK11207	197	tellurite resistance protein TehB; Provisional	99.3
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.29
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.27
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.26
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.25
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.24
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.22
PLN02336	475	phosphoethanolamine N-methyltransferase	99.2
PRK06922	677	hypothetical protein; Provisional	99.19
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.19
PRK08317	241	hypothetical protein; Provisional	99.18
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.17
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.16
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.16
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	99.12
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.12
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.1
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.08
PLN02232	160	ubiquinone biosynthesis methyltransferase	99.06
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.03
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.02
PRK06202	232	hypothetical protein; Provisional	99.0
PRK12335	287	tellurite resistance protein TehB; Provisional	99.0
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.0
KOG4300	252	consensus Predicted methyltransferase [General fun	98.99
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.99
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	98.98
PRK05785	226	hypothetical protein; Provisional	98.97
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.95
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	98.94
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	98.93
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	98.92
TIGR03438	301	probable methyltransferase. This model represents	98.91
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.91
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	98.89
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	98.88
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	98.86
PLN03075	296	nicotianamine synthase; Provisional	98.86
PRK04266	226	fibrillarin; Provisional	98.86
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.85
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.84
PLN02585	315	magnesium protoporphyrin IX methyltransferase	98.84
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.78
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.75
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.75
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.73
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.71
PTZ00146	293	fibrillarin; Provisional	98.64
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	98.62
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.6
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	98.59
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.56
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.51
KOG2361	264	consensus Predicted methyltransferase [General fun	98.51
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.46
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.45
PF08100	51	Dimerisation: Dimerisation domain; InterPro: IPR01	98.43
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.39
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	98.38
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.37
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.37
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.36
PRK14968	188	putative methyltransferase; Provisional	98.36
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	98.35
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.34
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.33
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.32
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.29
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	98.27
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	98.23
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.22
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.21
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.19
PRK14967	223	putative methyltransferase; Provisional	98.19
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.19
KOG2899	288	consensus Predicted methyltransferase [General fun	98.18
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	98.14
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.14
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.13
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	98.09
PRK07402	196	precorrin-6B methylase; Provisional	98.09
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.08
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.08
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.06
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.05
PRK04457	262	spermidine synthase; Provisional	98.01
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.0
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.0
PHA03411	279	putative methyltransferase; Provisional	97.99
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	97.96
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.94
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	97.92
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.92
TIGR00438	188	rrmJ cell division protein FtsJ.	97.91
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	97.9
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.9
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	97.89
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	97.89
KOG3010	261	consensus Methyltransferase [General function pred	97.88
PRK00811	283	spermidine synthase; Provisional	97.88
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	97.87
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	97.86
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	97.85
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.85
PRK03612	521	spermidine synthase; Provisional	97.85
KOG1271	227	consensus Methyltransferases [General function pre	97.83
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.82
PRK01581	374	speE spermidine synthase; Validated	97.82
COG4123	248	Predicted O-methyltransferase [General function pr	97.82
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.81
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	97.76
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.73
PLN02366	308	spermidine synthase	97.72
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.68
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	97.68
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.63
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.59
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	97.55
PRK14904	445	16S rRNA methyltransferase B; Provisional	97.54
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.49
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	97.45
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.41
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	97.32
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	97.3
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.3
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	97.26
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.25
PRK14902	444	16S rRNA methyltransferase B; Provisional	97.24
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.23
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.22
KOG1331	293	consensus Predicted methyltransferase [General fun	97.2
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	97.11
COG4798	238	Predicted methyltransferase [General function pred	97.09
smart00550	68	Zalpha Z-DNA-binding domain in adenosine deaminase	97.08
PF09339	52	HTH_IclR: IclR helix-turn-helix domain; InterPro:	97.07
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.05
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	97.05
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.94
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.86
PF01022	47	HTH_5: Bacterial regulatory protein, arsR family;	96.84
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	96.81
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	96.8
smart00346	91	HTH_ICLR helix_turn_helix isocitrate lyase regulat	96.8
COG1414	246	IclR Transcriptional regulator [Transcription]	96.74
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	96.67
COG3315	297	O-Methyltransferase involved in polyketide biosynt	96.66
PF14947	77	HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_	96.63
PRK15090	257	DNA-binding transcriptional regulator KdgR; Provis	96.61
COG2890	280	HemK Methylase of polypeptide chain release factor	96.6
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	96.55
PLN02823	336	spermine synthase	96.54
TIGR02431	248	pcaR_pcaU beta-ketoadipate pathway transcriptional	96.51
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.41
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	96.39
PLN02672	1082	methionine S-methyltransferase	96.39
PHA03412	241	putative methyltransferase; Provisional	96.39
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	96.37
PRK11569	274	transcriptional repressor IclR; Provisional	96.33
PLN02476	278	O-methyltransferase	96.32
TIGR00027	260	mthyl_TIGR00027 methyltransferase, putative, TIGR0	96.32
PF12840	61	HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_	96.28
PF02082	83	Rrf2: Transcriptional regulator; InterPro: IPR0009	96.26
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.25
smart00419	48	HTH_CRP helix_turn_helix, cAMP Regulatory protein.	96.25
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	96.22
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	96.22
PRK04148	134	hypothetical protein; Provisional	96.21
PRK10163	271	DNA-binding transcriptional repressor AllR; Provis	96.2
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	96.19
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	96.11
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	96.11
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	96.05
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	96.04
cd00092	67	HTH_CRP helix_turn_helix, cAMP Regulatory protein	96.03
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	96.02
PRK09834	263	DNA-binding transcriptional activator MhpR; Provis	95.98
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.95
KOG2940	325	consensus Predicted methyltransferase [General fun	95.95
PF13463	68	HTH_27: Winged helix DNA-binding domain; PDB: 3GFL	95.88
COG4076	252	Predicted RNA methylase [General function predicti	95.83
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	95.83
PF01978	68	TrmB: Sugar-specific transcriptional regulator Trm	95.8
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.75
COG4742	260	Predicted transcriptional regulator [Transcription	95.72
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	95.72
COG3355	126	Predicted transcriptional regulator [Transcription	95.65
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.64
PRK00536	262	speE spermidine synthase; Provisional	95.48
PRK10857	164	DNA-binding transcriptional regulator IscR; Provis	95.46
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	95.43
PF01638	90	HxlR: HxlR-like helix-turn-helix; InterPro: IPR002	95.4
PF13601	80	HTH_34: Winged helix DNA-binding domain; PDB: 1UB9	95.35
PRK10141	117	DNA-binding transcriptional repressor ArsR; Provis	95.32
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	95.27
PF13412	48	HTH_24: Winged helix-turn-helix DNA-binding; PDB:	95.22
smart00347	101	HTH_MARR helix_turn_helix multiple antibiotic resi	95.14
PHA00738	108	putative HTH transcription regulator	95.08
PRK03902	142	manganese transport transcriptional regulator; Pro	95.06
PLN02589	247	caffeoyl-CoA O-methyltransferase	94.9
TIGR02010	135	IscR iron-sulfur cluster assembly transcription fa	94.87
PF09012	69	FeoC: FeoC like transcriptional regulator; InterPr	94.86
PF04703	62	FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.	94.84
TIGR00122	69	birA_repr_reg BirA biotin operon repressor domain.	94.83
smart00418	66	HTH_ARSR helix_turn_helix, Arsenical Resistance Op	94.81
COG1959	150	Predicted transcriptional regulator [Transcription	94.68
COG4122	219	Predicted O-methyltransferase [General function pr	94.62
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	94.58
PF01726	65	LexA_DNA_bind: LexA DNA binding domain; InterPro:	94.55
TIGR00738	132	rrf2_super rrf2 family protein (putative transcrip	94.54
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	94.49
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	94.49
TIGR02702	203	SufR_cyano iron-sulfur cluster biosynthesis transc	94.4
TIGR02337	118	HpaR homoprotocatechuate degradation operon regula	94.36
COG4262	508	Predicted spermidine synthase with an N-terminal m	94.34
COG2345	218	Predicted transcriptional regulator [Transcription	94.25
PRK11920	153	rirA iron-responsive transcriptional regulator; Re	94.18
PRK11050	152	manganese transport regulator MntR; Provisional	94.1
COG1321	154	TroR Mn-dependent transcriptional regulator [Trans	94.05
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	93.86
PF06859	110	Bin3: Bicoid-interacting protein 3 (Bin3); InterPr	93.82
PF08220	57	HTH_DeoR: DeoR-like helix-turn-helix domain; Inter	93.72
cd00090	78	HTH_ARSR Arsenical Resistance Operon Repressor and	93.72
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	93.6
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	93.56
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	93.5
PRK11014	141	transcriptional repressor NsrR; Provisional	93.47
PF12802	62	MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP	93.31
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	93.29
COG2521	287	Predicted archaeal methyltransferase [General func	93.29
COG3897	218	Predicted methyltransferase [General function pred	93.19
PF10007	92	DUF2250: Uncharacterized protein conserved in arch	93.15
TIGR02944	130	suf_reg_Xantho FeS assembly SUF system regulator,	93.12
PF01047	59	MarR: MarR family; InterPro: IPR000835 The MarR-ty	93.05
smart00529	96	HTH_DTXR Helix-turn-helix diphteria tox regulatory	93.02
COG4190	144	Predicted transcriptional regulator [Transcription	92.92
smart00420	53	HTH_DEOR helix_turn_helix, Deoxyribose operon repr	92.87
COG4301	321	Uncharacterized conserved protein [Function unknow	92.73
PHA02943	165	hypothetical protein; Provisional	92.59
PRK11512	144	DNA-binding transcriptional repressor MarR; Provis	92.57
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	92.51
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	92.4
TIGR01884	203	cas_HTH CRISPR locus-related DNA-binding protein.	92.26
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	92.1
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	91.95
PF06163	127	DUF977: Bacterial protein of unknown function (DUF	91.58
COG1733	120	Predicted transcriptional regulators [Transcriptio	91.55
PF07789	155	DUF1627: Protein of unknown function (DUF1627); In	91.51
cd07377	66	WHTH_GntR Winged helix-turn-helix (WHTH) DNA-bindi	91.43
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	91.42
TIGR01889	109	Staph_reg_Sar staphylococcal accessory regulator f	91.41
TIGR01610	95	phage_O_Nterm phage replication protein O, N-termi	91.37
smart00344	108	HTH_ASNC helix_turn_helix ASNC type. AsnC: an auto	91.28
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	91.25
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	91.24
smart00345	60	HTH_GNTR helix_turn_helix gluconate operon transcr	91.1
PF00325	32	Crp: Bacterial regulatory proteins, crp family; In	91.07
COG1497	260	Predicted transcriptional regulator [Transcription	91.05
PRK06266	178	transcription initiation factor E subunit alpha; V	90.97
PF07381	90	DUF1495: Winged helix DNA-binding domain (DUF1495)	90.83
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	90.44
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	90.41
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	90.18
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	90.05
TIGR00373	158	conserved hypothetical protein TIGR00373. This fam	89.91
PF08461	66	HTH_12: Ribonuclease R winged-helix domain; InterP	89.91
PRK15431	78	ferrous iron transport protein FeoC; Provisional	89.86
PRK05638	442	threonine synthase; Validated	89.73
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	89.34
cd07153	116	Fur_like Ferric uptake regulator(Fur) and related	89.18
PF04967	53	HTH_10: HTH DNA binding domain; InterPro: IPR00705	89.07
PF01325	60	Fe_dep_repress: Iron dependent repressor, N-termin	88.98
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	88.9
PF13545	76	HTH_Crp_2: Crp-like helix-turn-helix domain; PDB:	88.89
PF14394	171	DUF4423: Domain of unknown function (DUF4423)	88.76
PF08279	55	HTH_11: HTH domain; InterPro: IPR013196 Winged hel	88.52
PRK14165	217	winged helix-turn-helix domain-containing protein/	88.49
KOG3115	249	consensus Methyltransferase-like protein [General	88.28
PRK03573	144	transcriptional regulator SlyA; Provisional	88.2
PRK10870	176	transcriptional repressor MprA; Provisional	88.09
PRK04172	489	pheS phenylalanyl-tRNA synthetase subunit alpha; P	87.79
PRK11169	164	leucine-responsive transcriptional regulator; Prov	87.4
TIGR00498	199	lexA SOS regulatory protein LexA. LexA acts as a h	87.36
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	87.34
PLN02668	386	indole-3-acetate carboxyl methyltransferase	86.97
COG3432	95	Predicted transcriptional regulator [Transcription	86.86
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	86.75
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	86.41
COG1378	247	Predicted transcriptional regulators [Transcriptio	86.34
PRK04214	412	rbn ribonuclease BN/unknown domain fusion protein;	86.27
PRK11179	153	DNA-binding transcriptional regulator AsnC; Provis	86.08
COG4189	308	Predicted transcriptional regulator [Transcription	85.99
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	85.44
KOG2904	328	consensus Predicted methyltransferase [General fun	85.31
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	85.1
PF04182	75	B-block_TFIIIC: B-block binding subunit of TFIIIC;	85.03
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	84.89
PRK12423	202	LexA repressor; Provisional	84.83
PF05732	165	RepL: Firmicute plasmid replication protein (RepL)	84.53
PF03444	78	HrcA_DNA-bdg: Winged helix-turn-helix transcriptio	84.36
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	84.11
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	83.98
PF05584	72	Sulfolobus_pRN: Sulfolobus plasmid regulatory prot	83.83
COG1510	177	Predicted transcriptional regulators [Transcriptio	83.61
PLN02853	492	Probable phenylalanyl-tRNA synthetase alpha chain	83.35
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	83.25
KOG3924	419	consensus Putative protein methyltransferase invol	83.18
PF02319	71	E2F_TDP: E2F/DP family winged-helix DNA-binding do	82.94
PF13730	55	HTH_36: Helix-turn-helix domain	82.84
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	82.06
PRK06474	178	hypothetical protein; Provisional	81.77
COG1522	154	Lrp Transcriptional regulators [Transcription]	81.72
PF02002	105	TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024	81.06

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=100.00  E-value=3.6e-42  Score=299.59  Aligned_cols=295  Identities=37%  Similarity=0.595  Sum_probs=252.6

Q ss_pred             CCCccccccccccccCCCCCCHHHHHHHhCC-CCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCC
Q 043063            1 MEDNECRDGGKKGRLANTPLSASQILTRILP-SGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAE   79 (301)
Q Consensus         1 ~~~~~a~~lglf~~L~~g~~t~~ela~~~~~-~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~   79 (301)
                      |-+.||+|||+||.|..++. ..|+|..+-. ..|..|..++|+||.|++.+++....-+ .. .|++++.++++.+...
T Consensus        21 ~~lk~A~eL~v~d~l~~~~~-p~~ia~~l~~~~~~~~p~ll~r~lr~L~s~~i~k~~~~~-~~-~Y~~~~~~~~~l~~~~   97 (342)
T KOG3178|consen   21 MVLKAACELGVFDILANAGS-PSEIASLLPTPKNPEAPVLLDRILRLLVSYSILKCRLVG-GE-VYSATPVCKYFLKDSG   97 (342)
T ss_pred             HHHHHHHHcChHHHHHhCCC-HHHHHHhccCCCCCCChhHHHHHHHHHHHhhhceeeeec-ce-eeeccchhhhheecCC
Confidence            34689999999999997443 6777777663 2344688999999999999999987321 12 7999999998776655


Q ss_pred             CCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063           80 GQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK  159 (301)
Q Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~  159 (301)
                      ..++++++...+++..++.|..+.++++.|. .+|..++|...|+|...+......|+++|...+....+.+++.+..|+
T Consensus        98 ~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~-~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~  176 (342)
T KOG3178|consen   98 GGSLAPLVLLNTSKVIMNTWQFLKDAILEGG-DAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFK  176 (342)
T ss_pred             CCchhHHHHHhcccchhhhHHHHHHHHHhcc-cCCccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence            5689999998888889999999999999998 789999997789998888888899999999998888888888887788


Q ss_pred             CcceEEeecCCce---------------eeeehhHHHhhCCCC-CceeEEeCCCCccCCcccEeeHhhhhccCChHHHHH
Q 043063          160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPSI-PGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL  223 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~-~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~  223 (301)
                      +....||||||.|               +.||+|.+++.++.. +.|+.+.||+|.+.|.+|+||+.+|||||+|++|++
T Consensus       177 ~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkWiLhdwtDedcvk  256 (342)
T KOG3178|consen  177 GVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKWILHDWTDEDCVK  256 (342)
T ss_pred             cCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEeecccCChHHHHH
Confidence            8999999999994               789999999999887 889999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCEEEEeccccCCCCCChH-HhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEccC
Q 043063          224 IMENCYKAIPAGGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLD  300 (301)
Q Consensus       224 iL~~~~~aL~pgg~lli~e~~~~~~~~~~~-~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~  300 (301)
                      +|++|+++|+|||+|+|.|.+.++....+. .......+|+.|+. .+.+|++|+.+||..++.++||.+.++.-.++
T Consensus       257 iLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~-~~~~Gkert~~e~q~l~~~~gF~~~~~~~~~~  333 (342)
T KOG3178|consen  257 ILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLT-QTSGGKERTLKEFQALLPEEGFPVCMVALTAY  333 (342)
T ss_pred             HHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHH-HhccceeccHHHHHhcchhhcCceeEEEeccC
Confidence            999999999999999999998885221111 23356678999987 56679999999999999999999999876654

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=100.00  E-value=1.1e-41  Score=294.29  Aligned_cols=222  Identities=33%  Similarity=0.560  Sum_probs=189.2

Q ss_pred             CCCeEecChhchhhhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHH
Q 043063           61 GERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAM  140 (301)
Q Consensus        61 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m  140 (301)
                      ++++|+||++|+.|+.+.+..++..++.+...+.++++|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+.+|
T Consensus         2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m   80 (241)
T PF00891_consen    2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGK-PPFEKAFGTPFFEYLEEDPELAKRFNAAM   80 (241)
T ss_dssp             STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS--HHHHHHSS-HHHHHHCSHHHHHHHHHHH
T ss_pred             CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCC-CHHHHhcCCcHHHhhhhChHHHHHHHHHH
Confidence            47899999999988887764568888877667789999999999999999 89999999889999999999999999999


Q ss_pred             hcCCccch-HHhhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcc
Q 043063          141 SGVSVPFM-TSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAA  204 (301)
Q Consensus       141 ~~~~~~~~-~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~  204 (301)
                      ...+.... ..+...++ |++..+|||||||+|               +++|+|+|++.+++.+||++++||||+++|.+
T Consensus        81 ~~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~  159 (241)
T PF00891_consen   81 AEYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVA  159 (241)
T ss_dssp             HHHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSE
T ss_pred             Hhhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhccc
Confidence            98887766 77888897 999999999999994               79999999999888999999999999779999


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCC--CEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAG--GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pg--g~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                      |+|++++|||+|+|++|.+||++++++|+||  |+|+|+|.+.++.....+.......+|++|++  +.+|++||.+||+
T Consensus       160 D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~--~~~G~~rt~~e~~  237 (241)
T PF00891_consen  160 DVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLV--LTGGKERTEEEWE  237 (241)
T ss_dssp             SEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHH--HHSSS-EEHHHHH
T ss_pred             cceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHH--hcCCCCcCHHHHH
Confidence            9999999999999999999999999999999  99999999999875432222233578999997  6679999999999


Q ss_pred             HHHH
Q 043063          283 QLGF  286 (301)
Q Consensus       283 ~~l~  286 (301)
                      +||.
T Consensus       238 ~ll~  241 (241)
T PF00891_consen  238 ALLK  241 (241)
T ss_dssp             HHHH
T ss_pred             HHhC
Confidence            9984

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=100.00  E-value=8e-39  Score=285.76  Aligned_cols=272  Identities=17%  Similarity=0.216  Sum_probs=197.8

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCC-
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQ-   81 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~-   81 (301)
                      +++|++||||+.|.+||+|++|||+++|+    +++.+++||++|+++|+|++.     +++|+||+.++.+..+.++. 
T Consensus         7 l~aa~~Lglfd~L~~gp~t~~eLA~~~~~----~~~~~~~lL~~L~~lgll~~~-----~~~y~~t~~~~~~l~~~~~~~   77 (306)
T TIGR02716         7 MKAAIELDLFSHMAEGPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTPKEP   77 (306)
T ss_pred             HHHHHHcCcHHHHhcCCCCHHHHHHHcCC----ChHHHHHHHHHHHhCCCeEec-----CCcEecchhHHhhccCCccch
Confidence            57999999999999899999999999999    999999999999999999987     68999999998665554321 


Q ss_pred             --ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063           82 --SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK  159 (301)
Q Consensus        82 --~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~  159 (301)
                        ++.+++.+.. ......|.+|.+++|+ . ++|...     +.+....++....+...+........+.+++..+ ++
T Consensus        78 ~~~~~~~~~~~~-~~~~~~~~~l~~~~r~-~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~  148 (306)
T TIGR02716        78 NLHQTPVAKAMA-FLADDFYMGLSQAVRG-Q-KNFKGQ-----VPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LD  148 (306)
T ss_pred             hhhcCchHHHHH-HHHHHHHHhHHHHhcC-C-cccccc-----cCCCCCCHHHHHhHHHHHHhcchhHHHHHHHHcC-CC
Confidence              1223333321 1233578899999984 3 344322     2222222233333333333433444566777775 88


Q ss_pred             CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~~  216 (301)
                      +..+|||||||+|               +++|+|.+++.+++       .+||+++++|++++ +|.+|+|++++++|+|
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~lh~~  228 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSA  228 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhhhcC
Confidence            8899999999995               68899999887653       37999999999975 7778999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh-hccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL-EGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~-~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      +++++.++|++++++|+|||+++|.|.+.++... .+...... ...+.|+.  .. ..-++.+||.++|+++||+.+++
T Consensus       229 ~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~--~~-~~~~~~~e~~~ll~~aGf~~v~~  304 (306)
T TIGR02716       229 NEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPEN-PNFDYLSHYILGAGMPF--SV-LGFKEQARYKEILESLGYKDVTM  304 (306)
T ss_pred             ChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC-chhhHHHHHHHHccccc--cc-ccCCCHHHHHHHHHHcCCCeeEe
Confidence            9999999999999999999999999998876532 11111110 11111111  11 12345899999999999998876


Q ss_pred             E
Q 043063          296 Y  296 (301)
Q Consensus       296 ~  296 (301)
                      +
T Consensus       305 ~  305 (306)
T TIGR02716       305 V  305 (306)
T ss_pred             c
Confidence            5

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.56  E-value=4.8e-14  Score=123.15  Aligned_cols=141  Identities=20%  Similarity=0.286  Sum_probs=104.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~  206 (301)
                      ..+++.++ +.+..+|||||||+|              +++|+ |.+++.+++    .++|+++.+|+.+. +|.  .|+
T Consensus        42 ~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~FD~  120 (263)
T PTZ00098         42 TKILSDIE-LNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTFDM  120 (263)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCeEE
Confidence            45556664 778889999999995              46687 667666553    36899999998764 664  499


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |++..++|++++++..++|++++++|+|||++++.|........  +......     ...  ...-...+.+++.++|+
T Consensus       121 V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~--~~~~~~~-----~~~--~~~~~~~~~~~~~~~l~  191 (263)
T PTZ00098        121 IYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIEN--WDEEFKA-----YIK--KRKYTLIPIQEYGDLIK  191 (263)
T ss_pred             EEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccC--cHHHHHH-----HHH--hcCCCCCCHHHHHHHHH
Confidence            99999998898767789999999999999999999987654311  1111100     110  11122358999999999


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      ++||+.++..+++
T Consensus       192 ~aGF~~v~~~d~~  204 (263)
T PTZ00098        192 SCNFQNVVAKDIS  204 (263)
T ss_pred             HCCCCeeeEEeCc
Confidence            9999999998865

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.53  E-value=3.2e-15  Score=127.82  Aligned_cols=139  Identities=19%  Similarity=0.312  Sum_probs=68.0

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~  211 (301)
                      .....+|||||||+|                +++|. +.+++.+++      ..+|+++.+|..+. +|+  .|+|++++
T Consensus        45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            455679999999995                56797 889988764      35899999998764 765  49999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh-hhcc--HHHHhhhhcc------------cccc
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL-LEGD--IFVMTIYRAK------------GKHM  276 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~-~~~d--~~m~~~~~~~------------g~~r  276 (301)
                      .||+++|.  .+.|++++++|+|||+++|+|...++.+   ...... ..+.  +..++-...+            -.-.
T Consensus       125 glrn~~d~--~~~l~E~~RVLkPGG~l~ile~~~p~~~---~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~  199 (233)
T PF01209_consen  125 GLRNFPDR--ERALREMYRVLKPGGRLVILEFSKPRNP---LLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFP  199 (233)
T ss_dssp             -GGG-SSH--HHHHHHHHHHEEEEEEEEEEEEEB-SSH---HHHHHHHH-------------------------------
T ss_pred             hHHhhCCH--HHHHHHHHHHcCCCeEEEEeeccCCCCc---hhhceeeeeeccccccccccccccccccccccccccccc
Confidence            99999986  4799999999999999999999887652   111110 0011  0000000000            1124


Q ss_pred             CHHHHHHHHHhCCCCceEEEEccCC
Q 043063          277 TEQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       277 t~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                      +.+++.++++++||+.++..++..|
T Consensus       200 ~~~~~~~~l~~~Gf~~v~~~~~~~G  224 (233)
T PF01209_consen  200 SPEELKELLEEAGFKNVEYRPLTFG  224 (233)
T ss_dssp             -------------------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            7999999999999999999887764

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR00740 methyltransferase, putative

Probab=99.53  E-value=3.4e-14  Score=122.53  Aligned_cols=132  Identities=18%  Similarity=0.231  Sum_probs=96.9

Q ss_pred             CCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~v  212 (301)
                      .+..+|||||||+|                 +++|+ +.+++.+++       ..+++++.+|+.+. ++..|++++..+
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~  131 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT  131 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence            45679999999996                 46788 888877754       24799999999764 566799999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh----------------hhcccccc
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----------------YRAKGKHM  276 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~----------------~~~~g~~r  276 (301)
                      +|++++++...+|++++++|+|||++++.|.+.+++..   .....  ..+.+.-.                ....-...
T Consensus       132 l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~---~~~~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  206 (239)
T TIGR00740       132 LQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK---INHLL--IDLHHQFKRANGYSELEISQKRTALENVMRTD  206 (239)
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh---HHHHH--HHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence            99999888889999999999999999999988765422   11111  11110000                00012356


Q ss_pred             CHHHHHHHHHhCCCCceEE
Q 043063          277 TEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       277 t~~e~~~~l~~aGf~~~~~  295 (301)
                      |.+++.++++++||+.+++
T Consensus       207 s~~~~~~~l~~aGF~~~~~  225 (239)
T TIGR00740       207 SIETHKARLKNVGFSHVEL  225 (239)
T ss_pred             CHHHHHHHHHHcCCchHHH
Confidence            9999999999999987653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.52  E-value=2.1e-13  Score=118.99  Aligned_cols=141  Identities=20%  Similarity=0.288  Sum_probs=98.6

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCcc-CCc--ccEee
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-IPA--ADAIF  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~p~--~D~v~  208 (301)
                      ..+..+|||||||+|                +++|. +++++.|++         .++++++.+|+.+. ++.  .|+|+
T Consensus        71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~  150 (261)
T PLN02233         71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT  150 (261)
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence            445689999999996                45787 788877643         24799999998763 554  49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc------------cccc
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK------------GKHM  276 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~------------g~~r  276 (301)
                      +..++|+++|.  .++|++++++|+|||++++.|...++..-..+...+....-+...+ ...+            ..-+
T Consensus       151 ~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~y~~l~~s~~~f~  227 (261)
T PLN02233        151 MGYGLRNVVDR--LKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVA-TGYGLAKEYEYLKSSINEYL  227 (261)
T ss_pred             EecccccCCCH--HHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHH-HHhCChHHHHHHHHHHHhcC
Confidence            99999999876  5899999999999999999998776542100110000000000000 0000            2245


Q ss_pred             CHHHHHHHHHhCCCCceEEEEccCC
Q 043063          277 TEQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       277 t~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                      +.+|+.++++++||+.++...+..|
T Consensus       228 s~~el~~ll~~aGF~~~~~~~~~~g  252 (261)
T PLN02233        228 TGEELEKLALEAGFSSAKHYEISGG  252 (261)
T ss_pred             CHHHHHHHHHHCCCCEEEEEEcCCC
Confidence            9999999999999999998876643

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.50  E-value=1.7e-13  Score=116.25  Aligned_cols=138  Identities=22%  Similarity=0.311  Sum_probs=102.4

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCCC------CceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI------PGVTHIGGDMFKS-IPA--ADAIFMKWVL  213 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~------~ri~~~~gd~~~~-~p~--~D~v~~~~vl  213 (301)
                      ..+.+|||||||||               +++|. +.+++.+++.      ..|+|+.+|+..- +|+  .|+|.+++.|
T Consensus        50 ~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fgl  129 (238)
T COG2226          50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISFGL  129 (238)
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeeehh
Confidence            35789999999995               67898 8899888752      2399999999874 886  3999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHH----HHhhh------------hccccccC
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIF----VMTIY------------RAKGKHMT  277 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~----m~~~~------------~~~g~~rt  277 (301)
                      |+++|.+  +.|++++|+|+|||+++++|.-.+..+.   .......+...    .++..            ...-...+
T Consensus       130 rnv~d~~--~aL~E~~RVlKpgG~~~vle~~~p~~~~---~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~  204 (238)
T COG2226         130 RNVTDID--KALKEMYRVLKPGGRLLVLEFSKPDNPV---LRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPD  204 (238)
T ss_pred             hcCCCHH--HHHHHHHHhhcCCeEEEEEEcCCCCchh---hHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCC
Confidence            9999864  9999999999999999999998876532   11111111111    11100            01122358


Q ss_pred             HHHHHHHHHhCCCCceEEEEccCC
Q 043063          278 EQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       278 ~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                      .+++.++++++||+.+...++.+|
T Consensus       205 ~~~l~~~~~~~gf~~i~~~~~~~G  228 (238)
T COG2226         205 QEELKQMIEKAGFEEVRYENLTFG  228 (238)
T ss_pred             HHHHHHHHHhcCceEEeeEeeeee
Confidence            999999999999999987776654

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.47  E-value=5.1e-13  Score=115.75  Aligned_cols=136  Identities=19%  Similarity=0.244  Sum_probs=95.6

Q ss_pred             CCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~v  212 (301)
                      .+..+|||||||+|                 +++|. |.+++.+++       ..+++++.+|+.+. .+..|++++..+
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~  134 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT  134 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence            45679999999996                 45787 888888754       24899999998764 555799999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh-----hh--hhhccHHHHh--hhhcc--ccccCHHHH
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT-----RA--LLEGDIFVMT--IYRAK--GKHMTEQEF  281 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~-----~~--~~~~d~~m~~--~~~~~--g~~rt~~e~  281 (301)
                      +|++++++...++++++++|+|||.+++.|.+..++....+..     .+  ...+......  .....  -...|.++.
T Consensus       135 l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~  214 (247)
T PRK15451        135 LQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETH  214 (247)
T ss_pred             HHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHH
Confidence            9999988778999999999999999999997766543211110     00  0001000000  00000  123489999


Q ss_pred             HHHHHhCCCCceE
Q 043063          282 KQLGFSAGFPHLR  294 (301)
Q Consensus       282 ~~~l~~aGf~~~~  294 (301)
                      .++|+++||+.+.
T Consensus       215 ~~~L~~aGF~~v~  227 (247)
T PRK15451        215 KARLHKAGFEHSE  227 (247)
T ss_pred             HHHHHHcCchhHH
Confidence            9999999998754

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.44  E-value=1.5e-12  Score=108.99  Aligned_cols=134  Identities=17%  Similarity=0.233  Sum_probs=97.6

Q ss_pred             CCcceEEeecCCce---------------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCcc-CCc--c
Q 043063          159 KGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-IPA--A  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~p~--~  204 (301)
                      ....++|||+||+|                     ++.|. |++++.+.+         ..++.++++|..+- +|.  .
T Consensus        99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~  178 (296)
T KOG1540|consen   99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF  178 (296)
T ss_pred             CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence            34589999999995                     57898 888887653         25699999998764 776  4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh--hhcc---------------HHHHh
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL--LEGD---------------IFVMT  267 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~--~~~d---------------~~m~~  267 (301)
                      |.|.+..-+.+|++.  .+.|+.++++|||||++.+.|+-.-+..   +..++.  ++++               ...++
T Consensus       179 D~yTiafGIRN~th~--~k~l~EAYRVLKpGGrf~cLeFskv~~~---~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLv  253 (296)
T KOG1540|consen  179 DAYTIAFGIRNVTHI--QKALREAYRVLKPGGRFSCLEFSKVENE---PLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLV  253 (296)
T ss_pred             eeEEEecceecCCCH--HHHHHHHHHhcCCCcEEEEEEccccccH---HHHHHHHhhhhhhhchhhHhhhhhHhhhhhHH
Confidence            999999999999996  4999999999999999999998655431   111111  1111               12232


Q ss_pred             hhhccccccCHHHHHHHHHhCCCCceE-EEEcc
Q 043063          268 IYRAKGKHMTEQEFKQLGFSAGFPHLR-LYRVL  299 (301)
Q Consensus       268 ~~~~~g~~rt~~e~~~~l~~aGf~~~~-~~~~~  299 (301)
                      ++.  -+-.+.+|++.+.+++||+.+. ...+.
T Consensus       254 eSI--~rfp~qe~f~~miedaGF~~~~~ye~lt  284 (296)
T KOG1540|consen  254 ESI--RRFPPQEEFASMIEDAGFSSVNGYENLT  284 (296)
T ss_pred             hhh--hcCCCHHHHHHHHHHcCCccccccccce
Confidence            111  2234899999999999999986 44433

>PLN02244 tocopherol O-methyltransferase

Probab=99.42  E-value=2e-12  Score=117.04  Aligned_cols=137  Identities=18%  Similarity=0.175  Sum_probs=94.9

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVL  213 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vl  213 (301)
                      +...+|||||||+|              +++|+ |.+++.+++       .++|+|+.+|+.+. ++.  .|+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            45689999999995              56787 666665543       25899999998764 554  4999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-CChHH-hhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCC
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-NESQR-TRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFP  291 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-~~~~~-~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~  291 (301)
                      |+++|.  .+++++++++|+|||+++|.+.+..... ..... ......++.....  ..--...+.++|.++++++||.
T Consensus       197 ~h~~d~--~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~--~~~p~~~s~~~~~~~l~~aGf~  272 (340)
T PLN02244        197 EHMPDK--RKFVQELARVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAA--YYLPAWCSTSDYVKLAESLGLQ  272 (340)
T ss_pred             hccCCH--HHHHHHHHHHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhh--ccCCCCCCHHHHHHHHHHCCCC
Confidence            999985  4899999999999999999987643221 00000 0001111111111  0001124899999999999999


Q ss_pred             ceEEEEcc
Q 043063          292 HLRLYRVL  299 (301)
Q Consensus       292 ~~~~~~~~  299 (301)
                      .+++.+..
T Consensus       273 ~v~~~d~s  280 (340)
T PLN02244        273 DIKTEDWS  280 (340)
T ss_pred             eeEeeeCc
Confidence            99988764

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.42  E-value=2.5e-12  Score=110.26  Aligned_cols=144  Identities=13%  Similarity=0.206  Sum_probs=99.4

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--c
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--A  204 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~  204 (301)
                      ++..++ .....+|||+|||+|                +++|+ |.+++.+++      .++++++.+|+.+. ++.  .
T Consensus        37 ~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  115 (231)
T TIGR02752        37 TMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSF  115 (231)
T ss_pred             HHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCc
Confidence            444443 566789999999995                56787 777766543      36899999998764 554  4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccH----------------HHHhh
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDI----------------FVMTI  268 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~----------------~m~~~  268 (301)
                      |+|++..++|++++.  .++|+++.+.|+|||++++.+...+...  .........+..                ..+. 
T Consensus       116 D~V~~~~~l~~~~~~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-  190 (231)
T TIGR02752       116 DYVTIGFGLRNVPDY--MQVLREMYRVVKPGGKVVCLETSQPTIP--GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQ-  190 (231)
T ss_pred             cEEEEecccccCCCH--HHHHHHHHHHcCcCeEEEEEECCCCCCh--HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHH-
Confidence            999999999998876  4899999999999999999887654331  100000000000                0000 


Q ss_pred             hhccccccCHHHHHHHHHhCCCCceEEEEccCC
Q 043063          269 YRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       269 ~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                       .......+.+++.++|+++||+.+++.+...|
T Consensus       191 -~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g  222 (231)
T TIGR02752       191 -ESTRDFPGMDELAEMFQEAGFKDVEVKSYTGG  222 (231)
T ss_pred             -HHHHHcCCHHHHHHHHHHcCCCeeEEEEcccc
Confidence             00112357899999999999999999887643

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.40  E-value=1.8e-12  Score=122.91  Aligned_cols=138  Identities=20%  Similarity=0.255  Sum_probs=103.5

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D  205 (301)
                      ..+++.+. .++..+|||||||+|              +++|+ +.+++.|++     ..+++|..+|++.. +|.  .|
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  334 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSFD  334 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCEE
Confidence            44666664 666789999999995              57788 677766643     35899999999875 564  49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++..++++++|.  .++|++++++|+|||++++.+.+..... +.+.  ..   .. ..   ..+...++..++.+++
T Consensus       335 ~I~s~~~l~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~-~~~~--~~---~~-~~---~~g~~~~~~~~~~~~l  402 (475)
T PLN02336        335 VIYSRDTILHIQDK--PALFRSFFKWLKPGGKVLISDYCRSPGT-PSPE--FA---EY-IK---QRGYDLHDVQAYGQML  402 (475)
T ss_pred             EEEECCcccccCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCC-CcHH--HH---HH-HH---hcCCCCCCHHHHHHHH
Confidence            99999999999886  4899999999999999999998765431 1111  11   11 11   2234567999999999


Q ss_pred             HhCCCCceEEEEcc
Q 043063          286 FSAGFPHLRLYRVL  299 (301)
Q Consensus       286 ~~aGf~~~~~~~~~  299 (301)
                      +++||+++.+.+.+
T Consensus       403 ~~aGF~~i~~~d~~  416 (475)
T PLN02336        403 KDAGFDDVIAEDRT  416 (475)
T ss_pred             HHCCCeeeeeecch
Confidence            99999999887643

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.40  E-value=4.7e-12  Score=110.30  Aligned_cols=142  Identities=20%  Similarity=0.203  Sum_probs=94.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCCc--ccEeeHh
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIFMK  210 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p~--~D~v~~~  210 (301)
                      ..+++.++ .....+|||||||+|               +++|. |.+++.+++ .+++++.+|+.+..+.  .|+|+++
T Consensus        19 ~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-~~~~~~~~d~~~~~~~~~fD~v~~~   96 (255)
T PRK14103         19 YDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-RGVDARTGDVRDWKPKPDTDVVVSN   96 (255)
T ss_pred             HHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-cCCcEEEcChhhCCCCCCceEEEEe
Confidence            45666664 667789999999996               56788 888888764 4689999998654332  5999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh--hhccHHHHhh-hhccccccCHHHHHHHHHh
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL--LEGDIFVMTI-YRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~--~~~d~~m~~~-~~~~g~~rt~~e~~~~l~~  287 (301)
                      .++|+++|.  .++|++++++|+|||++++......+.+.........  ..+...+... ...+....+.+++.++|++
T Consensus        97 ~~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~  174 (255)
T PRK14103         97 AALQWVPEH--ADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTD  174 (255)
T ss_pred             hhhhhCCCH--HHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHHHHHh
Confidence            999999875  5899999999999999988643211111000000000  0000000000 0112234589999999999


Q ss_pred             CCCCceE
Q 043063          288 AGFPHLR  294 (301)
Q Consensus       288 aGf~~~~  294 (301)
                      +||++..
T Consensus       175 aGf~v~~  181 (255)
T PRK14103        175 AGCKVDA  181 (255)
T ss_pred             CCCeEEE
Confidence            9998544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.35  E-value=5.4e-12  Score=113.22  Aligned_cols=129  Identities=17%  Similarity=0.127  Sum_probs=90.1

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCcc-CCc-ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~  215 (301)
                      ...+|||||||+|              +++|. +..+..+       ....+|.++.+|+.+. .+. .|+|++..+|||
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~H  201 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLYH  201 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhhc
Confidence            3479999999996              56786 4343321       1135899999988643 333 499999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      ..|.  ..+|+++++.|+|||++++.+.+.+.+...  .|...+..     |..    --..+|.+++..+|+++||+.+
T Consensus       202 ~~dp--~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p~~~y~~-----~~~----~~~lps~~~l~~~L~~aGF~~i  270 (322)
T PRK15068        202 RRSP--LDHLKQLKDQLVPGGELVLETLVIDGDENTVLVPGDRYAK-----MRN----VYFIPSVPALKNWLERAGFKDV  270 (322)
T ss_pred             cCCH--HHHHHHHHHhcCCCcEEEEEEEEecCCCccccCchhHHhc-----Ccc----ceeCCCHHHHHHHHHHcCCceE
Confidence            8875  489999999999999998877666543211  01111100     100    0124589999999999999999


Q ss_pred             EEEEcc
Q 043063          294 RLYRVL  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      ++....
T Consensus       271 ~~~~~~  276 (322)
T PRK15068        271 RIVDVS  276 (322)
T ss_pred             EEEeCC
Confidence            988654

>TIGR00452 methyltransferase, putative

Probab=99.34  E-value=1.1e-11  Score=110.17  Aligned_cols=129  Identities=17%  Similarity=0.117  Sum_probs=89.7

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCcc-CC-cccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKS-IP-AADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~-~p-~~D~v~~~~vlh~  215 (301)
                      ...+|||||||+|              +++|. +.++..+       ....++.+...++.+. .. ..|+|++..+||+
T Consensus       121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~H  200 (314)
T TIGR00452       121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLYH  200 (314)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhhc
Confidence            4579999999995              56786 4454332       1246788888876432 11 3599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      +++.  ..+|++++++|+|||.|++.+.+.+.+...  .|...+.     .|..  .  -..++.+++..+|+++||+.+
T Consensus       201 ~~dp--~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p~~ry~-----k~~n--v--~flpS~~~L~~~L~~aGF~~V  269 (314)
T TIGR00452       201 RKSP--LEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVPKDRYA-----KMKN--V--YFIPSVSALKNWLEKVGFENF  269 (314)
T ss_pred             cCCH--HHHHHHHHHhcCCCCEEEEEEEEecCccccccCchHHHH-----hccc--c--ccCCCHHHHHHHHHHCCCeEE
Confidence            9876  489999999999999999988766533211  0111110     1110  0  123589999999999999999


Q ss_pred             EEEEcc
Q 043063          294 RLYRVL  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      ++....
T Consensus       270 ~i~~~~  275 (314)
T TIGR00452       270 RILDVL  275 (314)
T ss_pred             EEEecc
Confidence            988654

Known examples to date are restricted to the proteobacteria.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.34  E-value=5.8e-12  Score=112.90  Aligned_cols=124  Identities=27%  Similarity=0.436  Sum_probs=93.2

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCC
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~  217 (301)
                      +..+|||||||+|               +++|. +.+++.+++   ..+++++.+|+.+. ++.  .|+|++..++|+++
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L~~~~  192 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRYVSAGSIEYWP  192 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEEEEcChhhhCC
Confidence            4579999999996               45687 777777654   35899999998764 544  49999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                      +.+  ++|+++++.|+|||++++.+.+.++.    +..+  ...+..+.        ..+.+|+.++|+++||+.+++.+
T Consensus       193 d~~--~~L~e~~rvLkPGG~LvIi~~~~p~~----~~~r--~~~~~~~~--------~~t~eEl~~lL~~aGF~~V~i~~  256 (340)
T PLN02490        193 DPQ--RGIKEAYRVLKIGGKACLIGPVHPTF----WLSR--FFADVWML--------FPKEEEYIEWFTKAGFKDVKLKR  256 (340)
T ss_pred             CHH--HHHHHHHHhcCCCcEEEEEEecCcch----hHHH--Hhhhhhcc--------CCCHHHHHHHHHHCCCeEEEEEE
Confidence            874  79999999999999999887654422    1111  11122221        24899999999999999999887


Q ss_pred             cc
Q 043063          298 VL  299 (301)
Q Consensus       298 ~~  299 (301)
                      +.
T Consensus       257 i~  258 (340)
T PLN02490        257 IG  258 (340)
T ss_pred             cC
Confidence            53

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.32  E-value=1.5e-11  Score=108.19  Aligned_cols=130  Identities=20%  Similarity=0.380  Sum_probs=96.6

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~  211 (301)
                      .....+|||||||+|                +++|. +.+++.+++      .+++++..+|+.+. ++.  .|+|+...
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            556789999999996                35687 777777764      26899999998653 544  49999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCC
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFP  291 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~  291 (301)
                      ++|++++.  .+++++++++|+|||++++.+.......   +. ..  ..+..+..  ...+...+..+|.++|+++||.
T Consensus       155 v~~~~~d~--~~~l~~~~r~LkpGG~l~i~~~~~~~~~---~~-~~--~~~~~~~~--~~~~~~~~~~e~~~~l~~aGf~  224 (272)
T PRK11873        155 VINLSPDK--ERVFKEAFRVLKPGGRFAISDVVLRGEL---PE-EI--RNDAELYA--GCVAGALQEEEYLAMLAEAGFV  224 (272)
T ss_pred             cccCCCCH--HHHHHHHHHHcCCCcEEEEEEeeccCCC---CH-HH--HHhHHHHh--ccccCCCCHHHHHHHHHHCCCC
Confidence            99988875  4899999999999999999998765331   11 11  12222322  2234556899999999999999


Q ss_pred             ceEEEE
Q 043063          292 HLRLYR  297 (301)
Q Consensus       292 ~~~~~~  297 (301)
                      .+++..
T Consensus       225 ~v~i~~  230 (272)
T PRK11873        225 DITIQP  230 (272)
T ss_pred             ceEEEe
Confidence            987754

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.31  E-value=8.8e-12  Score=111.33  Aligned_cols=134  Identities=11%  Similarity=0.018  Sum_probs=93.1

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      ...+|||||||+|             +++|. +.+++.++.       ..+|+++.+|+.+. .+.  .|+|++..+||+
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH  210 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH  210 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence            3468999999996             57797 777777653       14899999987542 332  599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc----ccccCHHHHHHHHHhCCCC
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK----GKHMTEQEFKQLGFSAGFP  291 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~----g~~rt~~e~~~~l~~aGf~  291 (301)
                      ++|.+  .+|+.+++.|+|||++++........   .+.........+.-+.  ..+    .+.+|.+|+.++|+++||+
T Consensus       211 v~d~~--~~L~~l~r~LkPGG~liist~nr~~~---~~~~~i~~~eyi~~~l--p~gth~~~~f~tp~eL~~lL~~aGf~  283 (322)
T PLN02396        211 VANPA--EFCKSLSALTIPNGATVLSTINRTMR---AYASTIVGAEYILRWL--PKGTHQWSSFVTPEELSMILQRASVD  283 (322)
T ss_pred             cCCHH--HHHHHHHHHcCCCcEEEEEECCcCHH---HHHHhhhhHHHHHhcC--CCCCcCccCCCCHHHHHHHHHHcCCe
Confidence            99874  89999999999999999887532210   0000000000000000  011    2346999999999999999


Q ss_pred             ceEEEEccC
Q 043063          292 HLRLYRVLD  300 (301)
Q Consensus       292 ~~~~~~~~~  300 (301)
                      ++++..+.+
T Consensus       284 i~~~~G~~~  292 (322)
T PLN02396        284 VKEMAGFVY  292 (322)
T ss_pred             EEEEeeeEE
Confidence            999877654

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.30  E-value=2e-11  Score=102.19  Aligned_cols=128  Identities=15%  Similarity=0.188  Sum_probs=92.0

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc-cc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA-AD  205 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~-~D  205 (301)
                      .+.+++.++ .....+|||+|||+|             +++|. |.+++.+++      ..++++..+|+.+. ++. .|
T Consensus        19 ~~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~fD   97 (197)
T PRK11207         19 HSEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEYD   97 (197)
T ss_pred             hHHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCcC
Confidence            345555554 445689999999996             57898 777776653      24688999998754 444 59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++..++|++++++...++++++++|+|||++++.+....++.. .+.       ..         -...+.+|+.+++
T Consensus        98 ~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~-~~~-------~~---------~~~~~~~el~~~~  160 (197)
T PRK11207         98 FILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-CTV-------GF---------PFAFKEGELRRYY  160 (197)
T ss_pred             EEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCC-CCC-------CC---------CCccCHHHHHHHh
Confidence            999999999999888899999999999999998777655443210 000       00         0123788888888


Q ss_pred             HhCCCCceEE
Q 043063          286 FSAGFPHLRL  295 (301)
Q Consensus       286 ~~aGf~~~~~  295 (301)
                      +  ||..+..
T Consensus       161 ~--~~~~~~~  168 (197)
T PRK11207        161 E--GWEMVKY  168 (197)
T ss_pred             C--CCeEEEe
Confidence            6  7877665

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.29  E-value=2.7e-11  Score=103.37  Aligned_cols=121  Identities=18%  Similarity=0.210  Sum_probs=89.8

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhccC
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTW  216 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~  216 (301)
                      .+|||||||+|               +++|+ |..++.+++       .+++++..+|+... .+. .|+|++..++|++
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            37999999995               35676 556555543       36899999998654 444 5999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      ++.  ..+|+++++.|+|||++++.+...+....   ...     +       .......+..+|.++++++||++++..
T Consensus        81 ~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---~~~-----~-------~~~~~~~s~~~~~~~l~~~Gf~~~~~~  143 (224)
T smart00828       81 KDK--MDLFSNISRHLKDGGHLVLADFIANLLSA---IEH-----E-------ETTSYLVTREEWAELLARNNLRVVEGV  143 (224)
T ss_pred             CCH--HHHHHHHHHHcCCCCEEEEEEcccccCcc---ccc-----c-------ccccccCCHHHHHHHHHHCCCeEEEeE
Confidence            875  59999999999999999999875432110   000     0       001123489999999999999999988


Q ss_pred             Ecc
Q 043063          297 RVL  299 (301)
Q Consensus       297 ~~~  299 (301)
                      ++.
T Consensus       144 ~~~  146 (224)
T smart00828      144 DAS  146 (224)
T ss_pred             ECc
Confidence            764

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.27  E-value=6.2e-11  Score=101.87  Aligned_cols=145  Identities=18%  Similarity=0.244  Sum_probs=97.0

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--  203 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--  203 (301)
                      ++..+. ..+..+|||||||+|                +++|. +.+++.+++       ..++++..+|+.+. .+.  
T Consensus        43 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  121 (239)
T PRK00216         43 TIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNS  121 (239)
T ss_pred             HHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCC
Confidence            344443 445679999999996                35676 566555543       25789999998764 332  


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHH---hhhhcc--------
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM---TIYRAK--------  272 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~---~~~~~~--------  272 (301)
                      .|+|++++++|++++.  ..+|+++.+.|+|||++++.+...+....   ...........++   .....+        
T Consensus       122 ~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~gG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (239)
T PRK00216        122 FDAVTIAFGLRNVPDI--DKALREMYRVLKPGGRLVILEFSKPTNPP---LKKAYDFYLFKVLPLIGKLISKNAEAYSYL  196 (239)
T ss_pred             ccEEEEecccccCCCH--HHHHHHHHHhccCCcEEEEEEecCCCchH---HHHHHHHHHHhhhHHHHHHHcCCcHHHHHH
Confidence            5999999999999875  58999999999999999999887654311   1000000000000   000000        


Q ss_pred             ----ccccCHHHHHHHHHhCCCCceEEEEccCC
Q 043063          273 ----GKHMTEQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       273 ----g~~rt~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                          ...++.++|.++|+++||+.+++.+..++
T Consensus       197 ~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~  229 (239)
T PRK00216        197 AESIRAFPDQEELAAMLEEAGFERVRYRNLTGG  229 (239)
T ss_pred             HHHHHhCCCHHHHHHHHHhCCCceeeeeeeecC
Confidence                12347899999999999999999887543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.26  E-value=4.8e-11  Score=101.47  Aligned_cols=137  Identities=18%  Similarity=0.200  Sum_probs=94.8

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v~~~~vl  213 (301)
                      ..+..+|||+|||.|                +++|. +.+++.+++    ..+++++.+|+.+. .+.  .|+|+++.++
T Consensus        37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            445689999999985                35676 566655543    35799999998764 443  5999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc-----------------cccc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----------------GKHM  276 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~-----------------g~~r  276 (301)
                      |+.++.  ..+|+++++.|+|||++++.+...+...   +...........++.  ..+                 ....
T Consensus       117 ~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  189 (223)
T TIGR01934       117 RNVTDI--QKALREMYRVLKPGGRLVILEFSKPANA---LLKKFYKFYLKNVLP--SIGGLISKNAEAYTYLPESIRAFP  189 (223)
T ss_pred             CCcccH--HHHHHHHHHHcCCCcEEEEEEecCCCch---hhHHHHHHHHHHhhh--hhhhhhcCCchhhHHHHHHHHhCC
Confidence            988874  5899999999999999999987655331   111000011001100  000                 1234


Q ss_pred             CHHHHHHHHHhCCCCceEEEEccCC
Q 043063          277 TEQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       277 t~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                      +..+|.++|+++||+.+++.++.++
T Consensus       190 ~~~~~~~~l~~aGf~~~~~~~~~~~  214 (223)
T TIGR01934       190 SQEELAAMLKEAGFEEVRYRSLTFG  214 (223)
T ss_pred             CHHHHHHHHHHcCCccceeeeeecc
Confidence            7899999999999999999887653

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.25  E-value=1.3e-11  Score=99.41  Aligned_cols=123  Identities=24%  Similarity=0.320  Sum_probs=82.6

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHH
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~  221 (301)
                      ....+|||||||.|             +++|. +.+++.    ..+.+...+.... .+.  .|+|++..+||+++|.  
T Consensus        21 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~--   94 (161)
T PF13489_consen   21 KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDP--   94 (161)
T ss_dssp             TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHH--
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccH--
Confidence            45689999999996             46676 566655    2222222211122 222  5999999999999974  


Q ss_pred             HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063          222 KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       222 ~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~  294 (301)
                      ..+|+++++.|+|||.+++.++.....   . ...... ......  .......++.++|+++++++||++++
T Consensus        95 ~~~l~~l~~~LkpgG~l~~~~~~~~~~---~-~~~~~~-~~~~~~--~~~~~~~~~~~~~~~ll~~~G~~iv~  160 (161)
T PF13489_consen   95 EEFLKELSRLLKPGGYLVISDPNRDDP---S-PRSFLK-WRYDRP--YGGHVHFFSPDELRQLLEQAGFEIVE  160 (161)
T ss_dssp             HHHHHHHHHCEEEEEEEEEEEEBTTSH---H-HHHHHH-CCGTCH--HTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred             HHHHHHHHHhcCCCCEEEEEEcCCcch---h-hhHHHh-cCCcCc--cCceeccCCHHHHHHHHHHCCCEEEE
Confidence            699999999999999999999876421   0 111111 111111  00224567999999999999999876

...

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.24  E-value=7e-11  Score=102.89  Aligned_cols=142  Identities=18%  Similarity=0.139  Sum_probs=93.3

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--CC-c-c
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--IP-A-A  204 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~p-~-~  204 (301)
                      .+++.++  ++..+|||||||+|             +++|. |.+++.+++       .++++++.+|+.+.  .+ . .
T Consensus        36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f  113 (255)
T PRK11036         36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV  113 (255)
T ss_pred             HHHHhcC--CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence            3444442  34579999999996             57898 788887754       25799999998642  33 2 5


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh------hhccccccCH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI------YRAKGKHMTE  278 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~------~~~~g~~rt~  278 (301)
                      |+|++..+||++++..  .+|++++++|+|||++++........   .........++......      ...-....+.
T Consensus       114 D~V~~~~vl~~~~~~~--~~l~~~~~~LkpgG~l~i~~~n~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  188 (255)
T PRK11036        114 DLILFHAVLEWVADPK--SVLQTLWSVLRPGGALSLMFYNANGL---LMHNMVAGNFDYVQAGMPKRKKRTLSPDYPLDP  188 (255)
T ss_pred             CEEEehhHHHhhCCHH--HHHHHHHHHcCCCeEEEEEEECccHH---HHHHHHccChHHHHhcCccccccCCCCCCCCCH
Confidence            9999999999998764  89999999999999998875432210   00000000000000000      0000123578


Q ss_pred             HHHHHHHHhCCCCceEEEEc
Q 043063          279 QEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       279 ~e~~~~l~~aGf~~~~~~~~  298 (301)
                      +++.++|+++||+++++.-+
T Consensus       189 ~~l~~~l~~aGf~~~~~~gi  208 (255)
T PRK11036        189 EQVYQWLEEAGWQIMGKTGV  208 (255)
T ss_pred             HHHHHHHHHCCCeEeeeeeE
Confidence            99999999999999876543

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.22  E-value=7.1e-11  Score=100.49  Aligned_cols=135  Identities=13%  Similarity=0.037  Sum_probs=90.5

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccEeeHhhhhccCC
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADAIFMKWVLTTWT  217 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~  217 (301)
                      .+..+|||||||+|             +++|. |++++.+++       .++++|..+|+.+.....|+|++..++++++
T Consensus        54 ~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~  133 (219)
T TIGR02021        54 LKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYP  133 (219)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCC
Confidence            34689999999996             56797 788877654       1489999999865433369999999999998


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh-hhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      +++..++++++++.+++++.+.+.    +..    +.......+....... ....-..++.+++.++++++||+++...
T Consensus       134 ~~~~~~~l~~i~~~~~~~~~i~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~  205 (219)
T TIGR02021       134 ASDMAKALGHLASLTKERVIFTFA----PKT----AWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREG  205 (219)
T ss_pred             HHHHHHHHHHHHHHhCCCEEEEEC----CCc----hHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeee
Confidence            877889999999988765443321    111    0111111111001000 0011234589999999999999999998


Q ss_pred             EccCC
Q 043063          297 RVLDC  301 (301)
Q Consensus       297 ~~~~~  301 (301)
                      .+.++
T Consensus       206 ~~~~~  210 (219)
T TIGR02021       206 LVSTG  210 (219)
T ss_pred             ccccc
Confidence            77654

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.20  E-value=1.1e-10  Score=110.57  Aligned_cols=130  Identities=19%  Similarity=0.276  Sum_probs=97.4

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc---CCc--cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS---IPA--AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~---~p~--~D  205 (301)
                      ..+++.++ ..+..+|||||||+|             +++|. +.+++.+++    .++++++.+|+...   +|.  .|
T Consensus        27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~fD  105 (475)
T PLN02336         27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGSVD  105 (475)
T ss_pred             hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCCEE
Confidence            44555554 445679999999996             56787 777766542    36899999998642   443  49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++..++|++++++..++|+++++.|+|||++++.|.+......   ...   .         ......|+..+|.++|
T Consensus       106 ~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~---~~~---~---------~~~~~~~~~~~~~~~f  170 (475)
T PLN02336        106 LIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGD---SKR---K---------NNPTHYREPRFYTKVF  170 (475)
T ss_pred             EEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCc---ccc---c---------CCCCeecChHHHHHHH
Confidence            999999999999988899999999999999999999987654321   100   0         1123345788999999


Q ss_pred             HhCCCCceE
Q 043063          286 FSAGFPHLR  294 (301)
Q Consensus       286 ~~aGf~~~~  294 (301)
                      .++||....
T Consensus       171 ~~~~~~~~~  179 (475)
T PLN02336        171 KECHTRDED  179 (475)
T ss_pred             HHheeccCC
Confidence            999997763

>PRK06922 hypothetical protein; Provisional

Probab=99.19  E-value=5.8e-11  Score=113.11  Aligned_cols=128  Identities=16%  Similarity=0.261  Sum_probs=92.3

Q ss_pred             CCchhccccCchHHHHHHHHHhcCCcc--chHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHH
Q 043063          120 EPTYSYYGKMPEMNGLMRKAMSGVSVP--FMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVV  181 (301)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~m~~~~~~--~~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~  181 (301)
                      ..+|+++.++++..++|...|......  ........++ +.+..+|||||||+|               +++|+ +.++
T Consensus       377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML  455 (677)
T PRK06922        377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI  455 (677)
T ss_pred             hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence            457888877777777777666543221  1111223343 666789999999996               56788 6677


Q ss_pred             hhCCC-----CCceeEEeCCCCcc---CCc--ccEeeHhhhhccC-----------ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          182 AEAPS-----IPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTW-----------TDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       182 ~~a~~-----~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~-----------~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      +.+++     ..+++++.+|..+.   ++.  .|+|+++.++|+|           ++++..++|++++++|+|||+++|
T Consensus       456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII  535 (677)
T PRK06922        456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIII  535 (677)
T ss_pred             HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEE
Confidence            77653     24688888997652   333  4999999999976           346788999999999999999999


Q ss_pred             eccccCCC
Q 043063          241 CEPVLPDD  248 (301)
Q Consensus       241 ~e~~~~~~  248 (301)
                      .|.+.++.
T Consensus       536 ~D~v~~E~  543 (677)
T PRK06922        536 RDGIMTED  543 (677)
T ss_pred             EeCccCCc
Confidence            99876544

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.19  E-value=8.5e-11  Score=102.84  Aligned_cols=146  Identities=14%  Similarity=0.077  Sum_probs=94.3

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCccCCccc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKSIPAAD  205 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~~p~~D  205 (301)
                      ...+++.++ .++..+|||||||-|              +++.+ ++-.+.+       ...+++++...|+.+.-+..|
T Consensus        51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~fD  129 (273)
T PF02353_consen   51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKFD  129 (273)
T ss_dssp             HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-S
T ss_pred             HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCCC
Confidence            356777775 889999999999995              45555 3333222       224799999999864333469


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      .|+...++.++..+.-..+++++.+.|+|||++++...+.....   .........+...-- ..++|..++.+++...+
T Consensus       130 ~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~~~---~~~~~~~~~~~i~ky-iFPgg~lps~~~~~~~~  205 (273)
T PF02353_consen  130 RIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITHRDPP---YHAERRSSSDFIRKY-IFPGGYLPSLSEILRAA  205 (273)
T ss_dssp             EEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE--HH---HHHCTTCCCHHHHHH-TSTTS---BHHHHHHHH
T ss_pred             EEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccccccc---chhhcCCCceEEEEe-eCCCCCCCCHHHHHHHH
Confidence            99999999999988888999999999999999999887775431   111000011221111 24678888999999999


Q ss_pred             HhCCCCceEEEEc
Q 043063          286 FSAGFPHLRLYRV  298 (301)
Q Consensus       286 ~~aGf~~~~~~~~  298 (301)
                      +++||++..+..+
T Consensus       206 ~~~~l~v~~~~~~  218 (273)
T PF02353_consen  206 EDAGLEVEDVENL  218 (273)
T ss_dssp             HHTT-EEEEEEE-
T ss_pred             hcCCEEEEEEEEc
Confidence            9999999988765

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PRK08317 hypothetical protein; Provisional

Probab=99.18  E-value=2.3e-10  Score=98.16  Aligned_cols=140  Identities=17%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--cc
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--AD  205 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D  205 (301)
                      +++.++ +.+..+|||+|||+|                +++|. |..++.+++     ..++++..+|+... ++.  .|
T Consensus        11 ~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D   89 (241)
T PRK08317         11 TFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSFD   89 (241)
T ss_pred             HHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCce
Confidence            334453 667789999999996                34576 555555543     36799999998753 443  49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-CChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-NESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~  284 (301)
                      +|++.+++|++++.  ..+++++++.|+|||++++.+...+... ................    .......+..+|.++
T Consensus        90 ~v~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  163 (241)
T PRK08317         90 AVRSDRVLQHLEDP--ARALAEIARVLRPGGRVVVLDTDWDTLVWHSGDRALMRKILNFWS----DHFADPWLGRRLPGL  163 (241)
T ss_pred             EEEEechhhccCCH--HHHHHHHHHHhcCCcEEEEEecCCCceeecCCChHHHHHHHHHHH----hcCCCCcHHHHHHHH
Confidence            99999999999986  4899999999999999999886432110 0000000111111111    111233467789999


Q ss_pred             HHhCCCCceEEEE
Q 043063          285 GFSAGFPHLRLYR  297 (301)
Q Consensus       285 l~~aGf~~~~~~~  297 (301)
                      ++++||+.+++..
T Consensus       164 l~~aGf~~~~~~~  176 (241)
T PRK08317        164 FREAGLTDIEVEP  176 (241)
T ss_pred             HHHcCCCceeEEE
Confidence            9999999876654

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.17  E-value=4e-11  Score=90.73  Aligned_cols=82  Identities=24%  Similarity=0.432  Sum_probs=66.0

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCC-Ccc-CC-cccEeeHhh-hh
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDM-FKS-IP-AADAIFMKW-VL  213 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~-~~~-~p-~~D~v~~~~-vl  213 (301)
                      ..+|||||||+|               +++|. |.+++.+++       .+||+++.+|+ ... .+ ..|+|++.. ++
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~   81 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL   81 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence            468999999995               67898 888777653       48999999999 333 33 369999999 67


Q ss_pred             ccCCh-HHHHHHHHHHHHhCCCCCEEEEec
Q 043063          214 TTWTD-DECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       214 h~~~d-~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      |++.+ ++..++|+++++.|+|||+++|.+
T Consensus        82 ~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   82 HFLLPLDERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             GGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence            75543 577899999999999999999865

...

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.16  E-value=5.6e-10  Score=97.50  Aligned_cols=88  Identities=19%  Similarity=0.263  Sum_probs=71.8

Q ss_pred             CCCcceEEeecCCce------------------------eeeeh-hHHHhhCCCC-------------------------
Q 043063          158 FKGVKRLVDVGGSAG------------------------INFDL-PEVVAEAPSI-------------------------  187 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g------------------------~~~Dl-p~v~~~a~~~-------------------------  187 (301)
                      ..+..+|+|+|||+|                        ++.|+ +.+++.|++.                         
T Consensus        97 ~~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~  176 (264)
T smart00138       97 HGRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDK  176 (264)
T ss_pred             CCCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCe
Confidence            344579999999997                        23476 7778777641                         


Q ss_pred             --------CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          188 --------PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       188 --------~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                              .+|+|..+|+.++ .|.  .|+|+++++||+++++...+++++++++|+|||+|++-....
T Consensus       177 ~~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~~E~  245 (264)
T smart00138      177 YRVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGHSES  245 (264)
T ss_pred             EEEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEECccc
Confidence                    3799999999886 433  499999999999999888899999999999999999876543

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.16  E-value=1.6e-10  Score=96.58  Aligned_cols=128  Identities=16%  Similarity=0.144  Sum_probs=87.9

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEe
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAI  207 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v  207 (301)
                      ..+++.++ .....+|||+|||+|             +++|. |.+++.+++     .-++++...|+... ++. .|+|
T Consensus        20 ~~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~I   98 (195)
T TIGR00477        20 SAVREAVK-TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDFI   98 (195)
T ss_pred             HHHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCEE
Confidence            34445553 444679999999996             57898 777776543     12367777787543 343 5999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                      +++.++|++++++...++++++++|+|||++++.+....+....++        .         .....+.+|+.++|+ 
T Consensus        99 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~~--------~---------~~~~~~~~el~~~f~-  160 (195)
T TIGR00477        99 FSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCHM--------P---------FSFTFKEDELRQYYA-  160 (195)
T ss_pred             EEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCCC--------C---------cCccCCHHHHHHHhC-
Confidence            9999999998888889999999999999998887765432211000        0         011237888888885 


Q ss_pred             CCCCceEEE
Q 043063          288 AGFPHLRLY  296 (301)
Q Consensus       288 aGf~~~~~~  296 (301)
                       +|++....
T Consensus       161 -~~~~~~~~  168 (195)
T TIGR00477       161 -DWELLKYN  168 (195)
T ss_pred             -CCeEEEee
Confidence             47766654

Part of a tellurite-reducing operon tehA and tehB

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=99.12  E-value=8e-11  Score=97.60  Aligned_cols=122  Identities=21%  Similarity=0.340  Sum_probs=82.8

Q ss_pred             CcceEEeecCCce-----e------eeeh----hHHHhhCCC-----CCc-eeEEeCCCCccCCc---ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG-----I------NFDL----PEVVAEAPS-----IPG-VTHIGGDMFKSIPA---ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g-----~------~~Dl----p~v~~~a~~-----~~r-i~~~~gd~~~~~p~---~D~v~~~~vlh~  215 (301)
                      +..+.||.|+|.|     +      -+|+    +.-++.|++     ..+ .++.+.-+-+-.|.   .|+||+.+++-|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            4689999999997     1      1233    455555542     233 33333322222343   599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      ++|++.+.+|++++++|+|+|.|+|-|.+...+.         ..+|      ...++-.|+.+.|+++|++||+++++.
T Consensus       135 LTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~---------~~~D------~~DsSvTRs~~~~~~lF~~AGl~~v~~  199 (218)
T PF05891_consen  135 LTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGF---------DEFD------EEDSSVTRSDEHFRELFKQAGLRLVKE  199 (218)
T ss_dssp             S-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSE---------EEEE------TTTTEEEEEHHHHHHHHHHCT-EEEEE
T ss_pred             CCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCC---------cccC------CccCeeecCHHHHHHHHHHcCCEEEEe
Confidence            9999999999999999999999999999887441         1233      244577799999999999999999875


Q ss_pred             E
Q 043063          296 Y  296 (301)
Q Consensus       296 ~  296 (301)
                      .
T Consensus       200 ~  200 (218)
T PF05891_consen  200 E  200 (218)
T ss_dssp             E
T ss_pred             c
Confidence            4

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.12  E-value=1.3e-09  Score=95.01  Aligned_cols=138  Identities=20%  Similarity=0.234  Sum_probs=92.4

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCC--cccEee
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIP--AADAIF  208 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p--~~D~v~  208 (301)
                      ...++..++ ..+..+|||||||+|               +++|. +.+++.+++ .++++++.+|+.+..+  ..|+|+
T Consensus        20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~   98 (258)
T PRK01683         20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF   98 (258)
T ss_pred             HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence            455666664 677889999999996               46787 788887765 4689999999875433  259999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh---hh---ccHHHHhhhhccccccCHHHHH
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL---LE---GDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~---~~---~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                      ++.++|+++|.  .++|++++++|+|||++++.-   +.... .+.....   ..   +...+...........+..++.
T Consensus        99 ~~~~l~~~~d~--~~~l~~~~~~LkpgG~~~~~~---~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  172 (258)
T PRK01683         99 ANASLQWLPDH--LELFPRLVSLLAPGGVLAVQM---PDNLD-EPSHVLMREVAENGPWEQNLPDRGARRAPLPPPHAYY  172 (258)
T ss_pred             EccChhhCCCH--HHHHHHHHHhcCCCcEEEEEC---CCCCC-CHHHHHHHHHHccCchHHHhccccccCcCCCCHHHHH
Confidence            99999988875  489999999999999998852   21111 1110000   00   0001100000012345788999


Q ss_pred             HHHHhCCCCc
Q 043063          283 QLGFSAGFPH  292 (301)
Q Consensus       283 ~~l~~aGf~~  292 (301)
                      +++.++|+.+
T Consensus       173 ~~l~~~g~~v  182 (258)
T PRK01683        173 DALAPAACRV  182 (258)
T ss_pred             HHHHhCCCce
Confidence            9999999864

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.10  E-value=6.1e-11  Score=95.04  Aligned_cols=122  Identities=25%  Similarity=0.385  Sum_probs=85.3

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-cccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-AADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~~D~v~~~~v  212 (301)
                      +..+|||+|||+|                +++|. |.+++.+++      .++++|..+|+.+.   ++ ..|+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            4679999999996                57897 888888764      36899999999882   22 3699999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh-hhccccccCHHHHHHHHHhCC
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI-YRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~-~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      +|++++..  .+|+++++.|+++|.+++.+......- ......   ...+.+-.. ....+.  +.++|..+|+++|
T Consensus        83 l~~~~~~~--~~l~~~~~~lk~~G~~i~~~~~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~--~~~~~~~~~~~ag  152 (152)
T PF13847_consen   83 LHHFPDPE--KVLKNIIRLLKPGGILIISDPNHNDEL-PEQLEE---LMNLYSEVWSMIYIGN--DKEEWKYILEEAG  152 (152)
T ss_dssp             GGGTSHHH--HHHHHHHHHEEEEEEEEEEEEEHSHHH-HHHHHH---HHHHHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred             hhhccCHH--HHHHHHHHHcCCCcEEEEEECChHHHH-HHHHHH---HHHHHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence            99999874  899999999999999999998732210 011111   111111110 011122  8899999999998

...

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.08  E-value=6.1e-10  Score=96.46  Aligned_cols=141  Identities=21%  Similarity=0.186  Sum_probs=107.5

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~  206 (301)
                      +.+++.+. +.+..+|||||||-|              +++++ ++..+.+++       .++|++...|+.+..+..|-
T Consensus        62 ~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~fDr  140 (283)
T COG2230          62 DLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEPFDR  140 (283)
T ss_pred             HHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccccce
Confidence            55677775 999999999999995              56676 444444332       36899999998654444799


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |+...+++++..+.-...++++++.|+|||++++.....++.+..    ....+..-.    ..++|..++.+++....+
T Consensus       141 IvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~~~~~----~~~~~i~~y----iFPgG~lPs~~~i~~~~~  212 (283)
T COG2230         141 IVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPDQEFR----RFPDFIDKY----IFPGGELPSISEILELAS  212 (283)
T ss_pred             eeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCCcccc----cchHHHHHh----CCCCCcCCCHHHHHHHHH
Confidence            999999999999888999999999999999999988877764320    111122222    246889999999999999


Q ss_pred             hCCCCceEEEEc
Q 043063          287 SAGFPHLRLYRV  298 (301)
Q Consensus       287 ~aGf~~~~~~~~  298 (301)
                      ++||.+..+..+
T Consensus       213 ~~~~~v~~~~~~  224 (283)
T COG2230         213 EAGFVVLDVESL  224 (283)
T ss_pred             hcCcEEehHhhh
Confidence            999998876543

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=99.06  E-value=7.6e-10  Score=89.46  Aligned_cols=124  Identities=19%  Similarity=0.265  Sum_probs=84.3

Q ss_pred             eeeh-hHHHhhCCC---------CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          174 NFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       174 ~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      ++|. +++++.|++         ..+|+|+.+|+.+- ++.  .|+|++..++|+++|.  .++|++++++|+|||+++|
T Consensus         2 GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkpGG~l~i   79 (160)
T PLN02232          2 GLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKPGSRVSI   79 (160)
T ss_pred             eEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCcCeEEEE
Confidence            5787 788877642         14799999998753 444  4999999999999875  5999999999999999999


Q ss_pred             eccccCCCCCChHHhhhhhh----------c---cHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEccCC
Q 043063          241 CEPVLPDDSNESQRTRALLE----------G---DIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC  301 (301)
Q Consensus       241 ~e~~~~~~~~~~~~~~~~~~----------~---d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~~  301 (301)
                      .|...+...-......+...          .   ..-.+.  ..-...++.+|+.++|+++||+.++...+..|
T Consensus        80 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~yl~--~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g  151 (160)
T PLN02232         80 LDFNKSNQSVTTFMQGWMIDNVVVPVATVYDLAKEYEYLK--YSINGYLTGEELETLALEAGFSSACHYEISGG  151 (160)
T ss_pred             EECCCCChHHHHHHHHHHccchHhhhhHHhCChHHHHhHH--HHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence            99876543100000000000          0   000000  00022358999999999999999998877654

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.03  E-value=2.3e-09  Score=93.10  Aligned_cols=133  Identities=15%  Similarity=0.197  Sum_probs=90.2

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC-CceeEEeCCCCcc-CCc--ccEeeHh
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA--ADAIFMK  210 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~-~p~--~D~v~~~  210 (301)
                      ..+++.++ .....+|||+|||+|             +++|+ |.+++.+++. ..+.++.+|+... ++.  .|+|+++
T Consensus        32 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~V~s~  110 (251)
T PRK10258         32 DALLAMLP-QRKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDLAWSN  110 (251)
T ss_pred             HHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEEEEEC
Confidence            44455553 345678999999996             56798 8888877653 4467888998663 544  4999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      .++|..+|.  ..+|++++++|+|||.+++.......-.   .........+.  .   .....-.+.++|.+++...|+
T Consensus       111 ~~l~~~~d~--~~~l~~~~~~Lk~gG~l~~~~~~~~~~~---el~~~~~~~~~--~---~~~~~~~~~~~l~~~l~~~~~  180 (251)
T PRK10258        111 LAVQWCGNL--STALRELYRVVRPGGVVAFTTLVQGSLP---ELHQAWQAVDE--R---PHANRFLPPDAIEQALNGWRY  180 (251)
T ss_pred             chhhhcCCH--HHHHHHHHHHcCCCeEEEEEeCCCCchH---HHHHHHHHhcc--C---CccccCCCHHHHHHHHHhCCc
Confidence            999877765  5899999999999999998776443210   01100000010  0   111233589999999999887


Q ss_pred             Cc
Q 043063          291 PH  292 (301)
Q Consensus       291 ~~  292 (301)
                      ..
T Consensus       181 ~~  182 (251)
T PRK10258        181 QH  182 (251)
T ss_pred             ee
Confidence            64

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.02  E-value=1.6e-09  Score=88.88  Aligned_cols=147  Identities=19%  Similarity=0.225  Sum_probs=103.7

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEee
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIF  208 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~  208 (301)
                      +.+++..++ .....+|+|+|||.|               +++|. |+|++.|++ ...++|..+|+.+..|.  .|+++
T Consensus        19 a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dllf   97 (257)
T COG4106          19 ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDLLF   97 (257)
T ss_pred             HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccchhh
Confidence            456777775 778899999999996               57897 999999875 58999999999877775  59999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh--hhhhh--ccHHHHhhhhccccccCHHHHHHH
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT--RALLE--GDIFVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~--~~~~~--~d~~m~~~~~~~g~~rt~~e~~~~  284 (301)
                      .+.+||-++|.  .++|.++...|.|||.|.+.=+-.-+.+  ++..  +....  +...+...........+.+.|.++
T Consensus        98 aNAvlqWlpdH--~~ll~rL~~~L~Pgg~LAVQmPdN~dep--sH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~l  173 (257)
T COG4106          98 ANAVLQWLPDH--PELLPRLVSQLAPGGVLAVQMPDNLDEP--SHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYEL  173 (257)
T ss_pred             hhhhhhhcccc--HHHHHHHHHhhCCCceEEEECCCccCch--hHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHH
Confidence            99999988886  5999999999999999998755332221  1110  00000  011111000112345689999999


Q ss_pred             HHhCCCCceEEEEccC
Q 043063          285 GFSAGFPHLRLYRVLD  300 (301)
Q Consensus       285 l~~aGf~~~~~~~~~~  300 (301)
                      |...+ ..+.++...|
T Consensus       174 La~~~-~rvDiW~T~Y  188 (257)
T COG4106         174 LAPLA-CRVDIWHTTY  188 (257)
T ss_pred             hCccc-ceeeeeeeec
Confidence            98887 6666666554

>PRK06202 hypothetical protein; Provisional

Probab=99.00  E-value=2.4e-09  Score=91.89  Aligned_cols=133  Identities=17%  Similarity=0.179  Sum_probs=86.1

Q ss_pred             CCcceEEeecCCce-------------------eeeeh-hHHHhhCCCC---CceeEEeCCCCcc-CC-c-ccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG-------------------INFDL-PEVVAEAPSI---PGVTHIGGDMFKS-IP-A-ADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------------~~~Dl-p~v~~~a~~~---~ri~~~~gd~~~~-~p-~-~D~v~~~~v  212 (301)
                      .+..+|||||||+|                   +++|+ |.+++.+++.   .++++..++.... .+ . .|+|+++.+
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~  138 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF  138 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence            45679999999996                   34576 7888777653   4566665543221 23 2 599999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHH-hh-hhcc-----ccccCHHHHHHHH
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM-TI-YRAK-----GKHMTEQEFKQLG  285 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~-~~-~~~~-----g~~rt~~e~~~~l  285 (301)
                      ||+++|++...+|+++++.++  |.+++.|...+..   .+.  .......... .. ...+     -.-+|.+|+.+++
T Consensus       139 lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~---~~~--~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll  211 (232)
T PRK06202        139 LHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL---AYA--LFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALA  211 (232)
T ss_pred             eecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH---HHH--HHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHh
Confidence            999999888899999999987  5666666644311   110  0000000000 00 0011     1235899999999


Q ss_pred             HhCCCCceEEEEcc
Q 043063          286 FSAGFPHLRLYRVL  299 (301)
Q Consensus       286 ~~aGf~~~~~~~~~  299 (301)
                      ++ ||++....+..
T Consensus       212 ~~-Gf~~~~~~~~~  224 (232)
T PRK06202        212 PQ-GWRVERQWPFR  224 (232)
T ss_pred             hC-CCeEEecccee
Confidence            99 99998887754

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.00  E-value=1.7e-09  Score=95.76  Aligned_cols=127  Identities=15%  Similarity=0.138  Sum_probs=88.5

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~  208 (301)
                      .++..++ .....+|||||||+|             +.+|. +.+++.+++     .-++++..+|+... ++. .|+|+
T Consensus       111 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~  189 (287)
T PRK12335        111 EVLEAVQ-TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFIL  189 (287)
T ss_pred             HHHHHhh-ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEE
Confidence            3444443 334569999999996             57787 677665543     23688888888665 444 59999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhC
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA  288 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~a  288 (301)
                      +..+||++++++...+++++++.|+|||++++......+... .+       ..         .....+.+|+.++++. 
T Consensus       190 ~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~-~~-------~p---------~~~~~~~~el~~~~~~-  251 (287)
T PRK12335        190 STVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYP-CP-------MP---------FSFTFKEGELKDYYQD-  251 (287)
T ss_pred             EcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCC-CC-------CC---------CCcccCHHHHHHHhCC-
Confidence            999999999888899999999999999998876654433211 00       00         0122478889888854 


Q ss_pred             CCCceEEE
Q 043063          289 GFPHLRLY  296 (301)
Q Consensus       289 Gf~~~~~~  296 (301)
                       |.+++..
T Consensus       252 -~~i~~~~  258 (287)
T PRK12335        252 -WEIVKYN  258 (287)
T ss_pred             -CEEEEEe
Confidence             7777654

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.00  E-value=2e-09  Score=92.08  Aligned_cols=133  Identities=18%  Similarity=0.202  Sum_probs=86.9

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccEeeHhhhhccCC
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADAIFMKWVLTTWT  217 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~  217 (301)
                      .+..+|||||||+|             +++|. +.+++.+++       .+++++..+|+-......|+|++..++|+++
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~~l~~~~  141 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLDVLIHYP  141 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcchhhcCC
Confidence            45679999999996             46787 777777654       1589999999422222359999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHH--HhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV--MTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m--~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      +++...+++++.+.++ ++.++....   ..   .... ......-..  .. ........+..+|.++++++||++.++
T Consensus       142 ~~~~~~~l~~l~~~~~-~~~~i~~~~---~~---~~~~-~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~  212 (230)
T PRK07580        142 QEDAARMLAHLASLTR-GSLIFTFAP---YT---PLLA-LLHWIGGLFPGPS-RTTRIYPHREKGIRRALAAAGFKVVRT  212 (230)
T ss_pred             HHHHHHHHHHHHhhcC-CeEEEEECC---cc---HHHH-HHHHhccccCCcc-CCCCccccCHHHHHHHHHHCCCceEee
Confidence            9888999999998764 333333221   11   0000 000000000  00 011233458899999999999999999


Q ss_pred             EEccC
Q 043063          296 YRVLD  300 (301)
Q Consensus       296 ~~~~~  300 (301)
                      .++..
T Consensus       213 ~~~~~  217 (230)
T PRK07580        213 ERISS  217 (230)
T ss_pred             eeccc
Confidence            88764

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.99  E-value=1.6e-09  Score=88.33  Aligned_cols=133  Identities=17%  Similarity=0.123  Sum_probs=88.7

Q ss_pred             CcceEEeecCCcee--------------eeeh-hHHHhhCC------CCCcee-EEeCCCCcc--CCc--ccEeeHhhhh
Q 043063          160 GVKRLVDVGGSAGI--------------NFDL-PEVVAEAP------SIPGVT-HIGGDMFKS--IPA--ADAIFMKWVL  213 (301)
Q Consensus       160 ~~~~vlDvGgG~g~--------------~~Dl-p~v~~~a~------~~~ri~-~~~gd~~~~--~p~--~D~v~~~~vl  213 (301)
                      +...||+||||+|.              .+|. |.+-+.+.      +..++. |+.++...-  +++  .|+|++..+|
T Consensus        76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL  155 (252)
T KOG4300|consen   76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVL  155 (252)
T ss_pred             CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence            34668999999974              4465 44433332      135676 777775432  344  3999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      -...|  .++.|+++++.|+|||+++.+|.+..+..  ....-.....+-....  ...|...|.+.|+.+ +++-|+..
T Consensus       156 CSve~--~~k~L~e~~rlLRpgG~iifiEHva~~y~--~~n~i~q~v~ep~~~~--~~dGC~ltrd~~e~L-eda~f~~~  228 (252)
T KOG4300|consen  156 CSVED--PVKQLNEVRRLLRPGGRIIFIEHVAGEYG--FWNRILQQVAEPLWHL--ESDGCVLTRDTGELL-EDAEFSID  228 (252)
T ss_pred             eccCC--HHHHHHHHHHhcCCCcEEEEEecccccch--HHHHHHHHHhchhhhe--eccceEEehhHHHHh-hhcccccc
Confidence            65555  57999999999999999999999887552  1111122223321121  456888888887655 77889888


Q ss_pred             EEEEcc
Q 043063          294 RLYRVL  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      +.....
T Consensus       229 ~~kr~~  234 (252)
T KOG4300|consen  229 SCKRFN  234 (252)
T ss_pred             hhhccc
Confidence            776554

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.99  E-value=2.4e-09  Score=98.29  Aligned_cols=139  Identities=12%  Similarity=0.004  Sum_probs=97.9

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCccCCcccEeeHh
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKSIPAADAIFMK  210 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~~p~~D~v~~~  210 (301)
                      ..+++.++ ..+..+|||||||+|              +++|+ ++.++.+++   ...+++...|+.+.-...|+|+..
T Consensus       157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~Ivs~  235 (383)
T PRK11705        157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDRIVSV  235 (383)
T ss_pred             HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCEEEEe
Confidence            34555564 667789999999995              46787 777776654   235788888875432235999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      .++++.++.....+++++++.|+|||++++.+...+.... ..    ..+++...    .++|..++.+++.+.++ .||
T Consensus       236 ~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~-~~----~~~i~~yi----fp~g~lps~~~i~~~~~-~~~  305 (383)
T PRK11705        236 GMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDT-NV----DPWINKYI----FPNGCLPSVRQIAQASE-GLF  305 (383)
T ss_pred             CchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCC-CC----CCCceeee----cCCCcCCCHHHHHHHHH-CCc
Confidence            9999998877789999999999999999998765543211 00    11222111    24577778999888866 588


Q ss_pred             CceEEEEc
Q 043063          291 PHLRLYRV  298 (301)
Q Consensus       291 ~~~~~~~~  298 (301)
                      .+.++..+
T Consensus       306 ~v~d~~~~  313 (383)
T PRK11705        306 VMEDWHNF  313 (383)
T ss_pred             EEEEEecC
Confidence            88877654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=98.98  E-value=1e-09  Score=92.69  Aligned_cols=132  Identities=16%  Similarity=0.084  Sum_probs=93.3

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCCC--------C----ceeEEeCCCCccCCcccEeeHhhhhc
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPSI--------P----GVTHIGGDMFKSIPAADAIFMKWVLT  214 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~--------~----ri~~~~gd~~~~~p~~D~v~~~~vlh  214 (301)
                      ..+|||||||.|             +++|. +.+++.|++.        .    |+++...|.....+..|+|+++.++|
T Consensus        90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevle  169 (282)
T KOG1270|consen   90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVLE  169 (282)
T ss_pred             CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHHH
Confidence            367999999996             57898 7888887641        2    57888887766566689999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc-----ccccCHHHHHHHHHhCC
Q 043063          215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-----GKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~-----g~~rt~~e~~~~l~~aG  289 (301)
                      |..|.  +.+++.+.+.|+|+|+++|..--..-.   +.  .....++=+.+. ..+.     .+-.+.+|..++++.+|
T Consensus       170 HV~dp--~~~l~~l~~~lkP~G~lfittinrt~l---S~--~~~i~~~E~vl~-ivp~Gth~~ekfi~p~e~~~~l~~~~  241 (282)
T KOG1270|consen  170 HVKDP--QEFLNCLSALLKPNGRLFITTINRTIL---SF--AGTIFLAEIVLR-IVPKGTHTWEKFINPEELTSILNANG  241 (282)
T ss_pred             HHhCH--HHHHHHHHHHhCCCCceEeeehhhhHH---Hh--hccccHHHHHHH-hcCCCCcCHHHcCCHHHHHHHHHhcC
Confidence            99886  499999999999999999887643211   11  001111111111 0111     23458999999999999


Q ss_pred             CCceEEEEccC
Q 043063          290 FPHLRLYRVLD  300 (301)
Q Consensus       290 f~~~~~~~~~~  300 (301)
                      +++..+....|
T Consensus       242 ~~v~~v~G~~y  252 (282)
T KOG1270|consen  242 AQVNDVVGEVY  252 (282)
T ss_pred             cchhhhhcccc
Confidence            98887765443

>PRK05785 hypothetical protein; Provisional

Probab=98.97  E-value=4.4e-09  Score=89.84  Aligned_cols=133  Identities=10%  Similarity=0.010  Sum_probs=86.3

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~  222 (301)
                      ..+|||||||+|              +++|. +++++.+++.  ..++.+|+... ++.  .|+|++..+||+++|.  .
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~--~  127 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--DDKVVGSFEALPFRDKSFDVVMSSFALHASDNI--E  127 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--cceEEechhhCCCCCCCEEEEEecChhhccCCH--H
Confidence            579999999996              46787 8888887653  34667887653 554  4999999999999886  4


Q ss_pred             HHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccc-------------cccCHHHHHHHHHhCC
Q 043063          223 LIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKG-------------KHMTEQEFKQLGFSAG  289 (301)
Q Consensus       223 ~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g-------------~~rt~~e~~~~l~~aG  289 (301)
                      +.|++++++|+|.  +.++|...++..-......+....-+..++ ....+             .-.+.+++.++++++|
T Consensus       128 ~~l~e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~-~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~  204 (226)
T PRK05785        128 KVIAEFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIA-CLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA  204 (226)
T ss_pred             HHHHHHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHH-HHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            8999999999993  445565444331000000000000111111 11111             1248899999999984


Q ss_pred             CCceEEEEccCC
Q 043063          290 FPHLRLYRVLDC  301 (301)
Q Consensus       290 f~~~~~~~~~~~  301 (301)
                       ..++..++..|
T Consensus       205 -~~~~~~~~~~G  215 (226)
T PRK05785        205 -DIKVYEERGLG  215 (226)
T ss_pred             -CceEEEEcccc
Confidence             77888887765

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.95  E-value=4.5e-09  Score=91.31  Aligned_cols=127  Identities=22%  Similarity=0.224  Sum_probs=85.2

Q ss_pred             cceEEeecCCce--------------eeeeh-hH------HHhhCC-CCCceeEEeCCCCccCCc---ccEeeHhhhhcc
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PE------VVAEAP-SIPGVTHIGGDMFKSIPA---ADAIFMKWVLTT  215 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~------v~~~a~-~~~ri~~~~gd~~~~~p~---~D~v~~~~vlh~  215 (301)
                      .++|||||||+|              +++|- +.      .++..- ...++.+++ ...+++|.   .|+|++..||+|
T Consensus       116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~~FDtVF~MGVLYH  194 (315)
T PF08003_consen  116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLGAFDTVFSMGVLYH  194 (315)
T ss_pred             CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccCCcCEEEEeeehhc
Confidence            479999999996              56775 22      222222 123344443 22233443   499999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      ..+.  ...|+.+++.|+|||.|++-..+++.+.+.  -|..++...-+         --...|...+..|++.+||+.+
T Consensus       195 rr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~n---------v~FiPs~~~L~~wl~r~gF~~v  263 (315)
T PF08003_consen  195 RRSP--LDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRN---------VWFIPSVAALKNWLERAGFKDV  263 (315)
T ss_pred             cCCH--HHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCc---------eEEeCCHHHHHHHHHHcCCceE
Confidence            8887  589999999999999998877777654221  12111111111         1245699999999999999999


Q ss_pred             EEEEcc
Q 043063          294 RLYRVL  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      ++.++.
T Consensus       264 ~~v~~~  269 (315)
T PF08003_consen  264 RCVDVS  269 (315)
T ss_pred             EEecCc
Confidence            998764

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.94  E-value=7.7e-10  Score=80.62  Aligned_cols=74  Identities=27%  Similarity=0.504  Sum_probs=58.7

Q ss_pred             EeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHH
Q 043063          165 VDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKL  223 (301)
Q Consensus       165 lDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~  223 (301)
                      ||||||+|              +++|. +..++.+++   ..++++..+|+.+. +|.  .|+|++..++|++++  ..+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~--~~~   78 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLED--PEA   78 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGSSH--HHH
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeeccC--HHH
Confidence            79999996              56787 666666654   46777999998765 664  499999999999944  469


Q ss_pred             HHHHHHHhCCCCCEEEE
Q 043063          224 IMENCYKAIPAGGKLIA  240 (301)
Q Consensus       224 iL~~~~~aL~pgg~lli  240 (301)
                      ++++++++|+|||+++|
T Consensus        79 ~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   79 ALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             HHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHcCcCeEEeC
Confidence            99999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=98.93  E-value=9.1e-10  Score=89.88  Aligned_cols=86  Identities=27%  Similarity=0.436  Sum_probs=67.4

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~  217 (301)
                      -....+++|+|||.|             ++.|. |..++.|++    .++|+|+..|+-+..|.  .|+|+++.++|+++
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYYL~  120 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSEVLYYLD  120 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES-GGGSS
T ss_pred             ccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEehHhHcCC
Confidence            445689999999996             57898 778877764    48999999999776676  49999999999998


Q ss_pred             h-HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          218 D-DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       218 d-~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      + ++...+++++.++|+|||.|++...
T Consensus       121 ~~~~L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  121 DAEDLRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence            6 6788999999999999999999886

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.92  E-value=6.6e-10  Score=82.21  Aligned_cols=72  Identities=25%  Similarity=0.428  Sum_probs=45.8

Q ss_pred             EeecCCce---------------eeeeh-hHHHhhCCCC---------CceeEEeCCCCccCC--cccEeeHhhhhccCC
Q 043063          165 VDVGGSAG---------------INFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIP--AADAIFMKWVLTTWT  217 (301)
Q Consensus       165 lDvGgG~g---------------~~~Dl-p~v~~~a~~~---------~ri~~~~gd~~~~~p--~~D~v~~~~vlh~~~  217 (301)
                      ||||||+|               +++|. |.+++.+++.         .++++...|.+...+  ..|+|++..+||+++
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~   80 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE   80 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence            79999996               57797 8888777752         245555555544433  359999999999995


Q ss_pred             hHHHHHHHHHHHHhCCCCCEE
Q 043063          218 DDECKLIMENCYKAIPAGGKL  238 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~l  238 (301)
                      +  ...+|+++++.|+|||+|
T Consensus        81 ~--~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   81 D--IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             ---HHHHHHHHTTT-TSS-EE
T ss_pred             h--HHHHHHHHHHHcCCCCCC
Confidence            5  459999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>TIGR03438 probable methyltransferase

Probab=98.91  E-value=3.2e-09  Score=94.65  Aligned_cols=81  Identities=19%  Similarity=0.343  Sum_probs=63.1

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--CCc------ccEe
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--IPA------ADAI  207 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~p~------~D~v  207 (301)
                      +..+|||+|||+|                +.+|+ +++++.+.+       ..+|.++.+|+.+.  ++.      ..++
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~  142 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF  142 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence            4578999999996                35788 667666543       13567789999864  332      1467


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      ++...+|+++++++..+|++++++|+|||+++|
T Consensus       143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~li  175 (301)
T TIGR03438       143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLI  175 (301)
T ss_pred             EecccccCCCHHHHHHHHHHHHHhcCCCCEEEE
Confidence            777899999999999999999999999999886

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.91  E-value=1.9e-08  Score=84.96  Aligned_cols=118  Identities=12%  Similarity=0.097  Sum_probs=84.4

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCC------------------CCCceeEEeCCCCccCC----
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAP------------------SIPGVTHIGGDMFKSIP----  202 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~------------------~~~ri~~~~gd~~~~~p----  202 (301)
                      ....++||+|||.|             +++|. |..++.+.                  +..+|+++.+|+++..+    
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~  112 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLG  112 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCC
Confidence            34579999999995             67898 66666531                  13579999999987532    


Q ss_pred             cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                      ..|+|+-+.++|+++.+...+.++++.++|+|||++++.-...+.....+|.                   ...+.+|+.
T Consensus       113 ~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~~gpp-------------------~~~~~~eL~  173 (213)
T TIGR03840       113 PVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEMAGPP-------------------FSVSPAEVE  173 (213)
T ss_pred             CcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCCCCcC-------------------CCCCHHHHH
Confidence            2499999999999999988999999999999999877765544322111111                   124788888


Q ss_pred             HHHHhCCCCceEEE
Q 043063          283 QLGFSAGFPHLRLY  296 (301)
Q Consensus       283 ~~l~~aGf~~~~~~  296 (301)
                      ++|+. +|.+..+.
T Consensus       174 ~~f~~-~~~i~~~~  186 (213)
T TIGR03840       174 ALYGG-HYEIELLE  186 (213)
T ss_pred             HHhcC-CceEEEEe
Confidence            88864 35554444

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=98.89  E-value=1.2e-08  Score=87.52  Aligned_cols=120  Identities=21%  Similarity=0.189  Sum_probs=85.2

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChH
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDD  219 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~  219 (301)
                      ..+|||||||+|               +++|. +.+++.+++  .++++++.+|+.+. ++.  .|+|++.+++|+.++.
T Consensus        35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~  114 (240)
T TIGR02072        35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL  114 (240)
T ss_pred             CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence            478999999996               56787 666655543  25799999998764 443  5999999999988775


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                        .++|++++++|+|||++++.+.....-      ........       .......+.++|.+++..+ |+...+.
T Consensus       115 --~~~l~~~~~~L~~~G~l~~~~~~~~~~------~~~~~~~~-------~~~~~~~~~~~~~~~l~~~-f~~~~~~  175 (240)
T TIGR02072       115 --SQALSELARVLKPGGLLAFSTFGPGTL------HELRQSFG-------QHGLRYLSLDELKALLKNS-FELLTLE  175 (240)
T ss_pred             --HHHHHHHHHHcCCCcEEEEEeCCccCH------HHHHHHHH-------HhccCCCCHHHHHHHHHHh-cCCcEEE
Confidence              489999999999999999886533211      00000000       1123445889999999988 8876654

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=98.88  E-value=5.9e-09  Score=87.59  Aligned_cols=87  Identities=18%  Similarity=0.358  Sum_probs=71.7

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEeeHhhhhccCChH
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDD  219 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~  219 (301)
                      .+..+|||||||+|               +++|+ |++++.|++ ..++++..+|+.++++.  .|+|++..+||+++++
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~  121 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD  121 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence            35678999999996               46787 888888876 46789999998876554  4999999999999988


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      +..++++++++.+  ++.++|.|...+.
T Consensus       122 ~~~~~l~el~r~~--~~~v~i~e~~~~~  147 (204)
T TIGR03587       122 NLPTAYRELYRCS--NRYILIAEYYNPS  147 (204)
T ss_pred             HHHHHHHHHHhhc--CcEEEEEEeeCCC
Confidence            8899999999986  5688888876543

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=98.86  E-value=4.6e-09  Score=88.11  Aligned_cols=132  Identities=18%  Similarity=0.153  Sum_probs=89.2

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCC---Cc--eeEEeCCCCcc-CC--cccEeeHhhhhccCC
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---PG--VTHIGGDMFKS-IP--AADAIFMKWVLTTWT  217 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~r--i~~~~gd~~~~-~p--~~D~v~~~~vlh~~~  217 (301)
                      ...+|||||||.|             +++|. +..++.|+..   +.  |++.+....+- ..  ..|+|+|..||+|.+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~  138 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVP  138 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccC
Confidence            3579999999996             56787 7777777642   22  33555444332 22  359999999999999


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccH-HHHhhhhcc-----ccccCHHHHHHHHHhCCCC
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDI-FVMTIYRAK-----GKHMTEQEFKQLGFSAGFP  291 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~-~m~~~~~~~-----g~~rt~~e~~~~l~~aGf~  291 (301)
                      |++  .+++.+.+.++|||.+++........      ......+.. ..+. ..+.     .+...++|+..++.++||.
T Consensus       139 dp~--~~~~~c~~lvkP~G~lf~STinrt~k------a~~~~i~~ae~vl~-~vP~gTH~~~k~irp~El~~~~~~~~~~  209 (243)
T COG2227         139 DPE--SFLRACAKLVKPGGILFLSTINRTLK------AYLLAIIGAEYVLR-IVPKGTHDYRKFIKPAELIRWLLGANLK  209 (243)
T ss_pred             CHH--HHHHHHHHHcCCCcEEEEeccccCHH------HHHHHHHHHHHHHH-hcCCcchhHHHhcCHHHHHHhcccCCce
Confidence            986  69999999999999998877643211      111111111 0110 0112     3446799999999999999


Q ss_pred             ceEEEEccC
Q 043063          292 HLRLYRVLD  300 (301)
Q Consensus       292 ~~~~~~~~~  300 (301)
                      ......+.+
T Consensus       210 ~~~~~g~~y  218 (243)
T COG2227         210 IIDRKGLTY  218 (243)
T ss_pred             EEeecceEe
Confidence            988877655

>PLN03075 nicotianamine synthase; Provisional

Probab=98.86  E-value=4.4e-09  Score=92.16  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             CcceEEeecCCce-----------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC---cccEeeHh
Q 043063          160 GVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP---AADAIFMK  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p---~~D~v~~~  210 (301)
                      +.++|+|||||.|                 +++|. |+.++.|++        .+||+|..+|..+..+   ..|+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            6789999999952                 57887 777776653        3689999999987532   35999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       ++|+|+.++-.++|+++++.|+|||.+++--
T Consensus       203 -ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        203 -ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             -cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence             9999976666899999999999999988765

>PRK04266 fibrillarin; Provisional

Probab=98.86  E-value=2.9e-08  Score=84.60  Aligned_cols=118  Identities=17%  Similarity=0.221  Sum_probs=77.3

Q ss_pred             CCCCCCcceEEeecCCce---------------eeeeh-hHHHh----hCCCCCceeEEeCCCCcc-----CCc-ccEee
Q 043063          155 YDGFKGVKRLVDVGGSAG---------------INFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADAIF  208 (301)
Q Consensus       155 ~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~----~a~~~~ri~~~~gd~~~~-----~p~-~D~v~  208 (301)
                      ++ .++..+|||+|||+|               +.+|. +.+++    .+++..+|.++.+|...+     ++. .|+++
T Consensus        68 l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         68 FP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEE
Confidence            43 667789999999995               24587 65544    444457899999998653     233 48876


Q ss_pred             HhhhhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063          209 MKWVLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       209 ~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                           |+.++.+ ...+|+++++.|+|||+++|.=....-+....+                    . +..++..+++++
T Consensus       147 -----~d~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~~--------------------~-~~~~~~~~~l~~  200 (226)
T PRK04266        147 -----QDVAQPNQAEIAIDNAEFFLKDGGYLLLAIKARSIDVTKDP--------------------K-EIFKEEIRKLEE  200 (226)
T ss_pred             -----ECCCChhHHHHHHHHHHHhcCCCcEEEEEEecccccCcCCH--------------------H-HHHHHHHHHHHH
Confidence                 5555432 346789999999999999994111111100000                    0 112344599999


Q ss_pred             CCCCceEEEEcc
Q 043063          288 AGFPHLRLYRVL  299 (301)
Q Consensus       288 aGf~~~~~~~~~  299 (301)
                      +||+.++...+.
T Consensus       201 aGF~~i~~~~l~  212 (226)
T PRK04266        201 GGFEILEVVDLE  212 (226)
T ss_pred             cCCeEEEEEcCC
Confidence            999999988764

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.85  E-value=1.5e-08  Score=86.89  Aligned_cols=136  Identities=16%  Similarity=0.058  Sum_probs=86.3

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccC--C-c-ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSI--P-A-ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~--p-~-~D~v~~~~vlh~~  216 (301)
                      +..+|||||||+|             +++|. +..++.+++     ..++++...|+.+..  + . .|+|++.+++++.
T Consensus        48 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~~  127 (233)
T PRK05134         48 FGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEHV  127 (233)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhcc
Confidence            4678999999996             45676 555555442     235778777765431  2 2 4999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh-hhccHHHHh-hhhccccccCHHHHHHHHHhCCCCceE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL-LEGDIFVMT-IYRAKGKHMTEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~-~~~d~~m~~-~~~~~g~~rt~~e~~~~l~~aGf~~~~  294 (301)
                      ++.  ..+|+.+.+.|+|||++++...... . . ....... ...-..... .........+.++|.++++++||++++
T Consensus       128 ~~~--~~~l~~~~~~L~~gG~l~v~~~~~~-~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~  202 (233)
T PRK05134        128 PDP--ASFVRACAKLVKPGGLVFFSTLNRN-L-K-SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQD  202 (233)
T ss_pred             CCH--HHHHHHHHHHcCCCcEEEEEecCCC-h-H-HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEee
Confidence            875  4789999999999999988754211 0 0 0000000 000000000 000012345889999999999999998


Q ss_pred             EEEccC
Q 043063          295 LYRVLD  300 (301)
Q Consensus       295 ~~~~~~  300 (301)
                      ...+.+
T Consensus       203 ~~~~~~  208 (233)
T PRK05134        203 ITGLHY  208 (233)
T ss_pred             eeeEEe
Confidence            876543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.84  E-value=1.7e-08  Score=83.72  Aligned_cols=110  Identities=20%  Similarity=0.284  Sum_probs=78.1

Q ss_pred             hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-ccEeeH
Q 043063          153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-ADAIFM  209 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~D~v~~  209 (301)
                      ..++ .....+|||||||+|               +.+|. |.+++.+++      ..+++++.+|....++. .|+|++
T Consensus        25 ~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v~~  103 (187)
T PRK08287         25 SKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAIFI  103 (187)
T ss_pred             HhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEEEE
Confidence            3443 556789999999995               46788 777776653      25799999998644554 599998


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      ....++     ...+++.+++.|+|||++++.....+                              +.+++.+++++.|
T Consensus       104 ~~~~~~-----~~~~l~~~~~~Lk~gG~lv~~~~~~~------------------------------~~~~~~~~l~~~g  148 (187)
T PRK08287        104 GGSGGN-----LTAIIDWSLAHLHPGGRLVLTFILLE------------------------------NLHSALAHLEKCG  148 (187)
T ss_pred             CCCccC-----HHHHHHHHHHhcCCCeEEEEEEecHh------------------------------hHHHHHHHHHHCC
Confidence            765443     24689999999999999987543111                              3456667888888


Q ss_pred             CCceEEEEc
Q 043063          290 FPHLRLYRV  298 (301)
Q Consensus       290 f~~~~~~~~  298 (301)
                      |+.++++.+
T Consensus       149 ~~~~~~~~~  157 (187)
T PRK08287        149 VSELDCVQL  157 (187)
T ss_pred             CCcceEEEE
Confidence            877765543

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=98.84  E-value=1.1e-08  Score=91.14  Aligned_cols=129  Identities=16%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCCC-----------CceeEEeCCCCccCCcccEeeHhhhhcc
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-----------PGVTHIGGDMFKSIPAADAIFMKWVLTT  215 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----------~ri~~~~gd~~~~~p~~D~v~~~~vlh~  215 (301)
                      ..+|||||||+|             +++|. +.+++.+++.           .+++|..+|+.+.-...|+|++..++||
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~vL~H  224 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLDVLIH  224 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcCEEEe
Confidence            579999999996             57798 7777666531           3578888887432223599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHh-hhhccccccCHHHHHHHHHhCCCCceE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT-IYRAKGKHMTEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~~g~~rt~~e~~~~l~~aGf~~~~  294 (301)
                      ++++....+++.+.+ +.+++ ++|..  .+...    .........-...+ .........+.++++++|+++||++.+
T Consensus       225 ~p~~~~~~ll~~l~~-l~~g~-liIs~--~p~~~----~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~  296 (315)
T PLN02585        225 YPQDKADGMIAHLAS-LAEKR-LIISF--APKTL----YYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVAR  296 (315)
T ss_pred             cCHHHHHHHHHHHHh-hcCCE-EEEEe--CCcch----HHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEE
Confidence            999887788888875 45554 44422  12110    00000000000000 000012234899999999999999876


Q ss_pred             EEE
Q 043063          295 LYR  297 (301)
Q Consensus       295 ~~~  297 (301)
                      ..-
T Consensus       297 ~~~  299 (315)
T PLN02585        297 REM  299 (315)
T ss_pred             EEE
Confidence            543

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.78  E-value=4.7e-08  Score=82.88  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=83.9

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCC------------------CCCceeEEeCCCCccCC----
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAP------------------SIPGVTHIGGDMFKSIP----  202 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~------------------~~~ri~~~~gd~~~~~p----  202 (301)
                      ....+|||+|||.|             +.+|. |..++.+.                  ...+|++..+|+++..+    
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~  115 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLA  115 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccCC
Confidence            34579999999995             67898 66565431                  13679999999997632    


Q ss_pred             cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                      ..|+|+-+.++|+++.+...+.++++.++|+|||++++.....+.....+|.                   ...|.+|+.
T Consensus       116 ~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~~gPp-------------------~~~~~~el~  176 (218)
T PRK13255        116 DVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEELAGPP-------------------FSVSDEEVE  176 (218)
T ss_pred             CeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccCCCCC-------------------CCCCHHHHH
Confidence            2499999999999999999999999999999999755544333322111111                   123889999


Q ss_pred             HHHHhCCCCceEEEE
Q 043063          283 QLGFSAGFPHLRLYR  297 (301)
Q Consensus       283 ~~l~~aGf~~~~~~~  297 (301)
                      ++|+. +|.+..+..
T Consensus       177 ~~~~~-~~~i~~~~~  190 (218)
T PRK13255        177 ALYAG-CFEIELLER  190 (218)
T ss_pred             HHhcC-CceEEEeee
Confidence            98864 255555443

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.75  E-value=3.5e-08  Score=84.07  Aligned_cols=132  Identities=17%  Similarity=0.060  Sum_probs=86.8

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----C-CceeEEeCCCCcc---CCc-ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----I-PGVTHIGGDMFKS---IPA-ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~-~ri~~~~gd~~~~---~p~-~D~v~~~~vlh~  215 (301)
                      ...+|||+|||+|             +++|. +.+++.+++     . .++++..+|+.+.   .+. .|+|++.+++|+
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~~  124 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLEH  124 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHHh
Confidence            3578999999996             36677 566665543     1 2688888887543   123 599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhc-----cccccCHHHHHHHHHhCCC
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA-----KGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~-----~g~~rt~~e~~~~l~~aGf  290 (301)
                      ..+..  .+|+++++.|+|||.+++.....+..   .....   ..+..+..-...     .....+..+|.++++++||
T Consensus       125 ~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~  196 (224)
T TIGR01983       125 VPDPQ--AFIRACAQLLKPGGILFFSTINRTPK---SYLLA---IVGAEYILRIVPKGTHDWEKFIKPSELTSWLESAGL  196 (224)
T ss_pred             CCCHH--HHHHHHHHhcCCCcEEEEEecCCCch---HHHHH---HHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCC
Confidence            98764  89999999999999988876532111   11100   000000000000     1123478999999999999


Q ss_pred             CceEEEEcc
Q 043063          291 PHLRLYRVL  299 (301)
Q Consensus       291 ~~~~~~~~~  299 (301)
                      +++++....
T Consensus       197 ~i~~~~~~~  205 (224)
T TIGR01983       197 RVKDVKGLV  205 (224)
T ss_pred             eeeeeeeEE
Confidence            998877543

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.75  E-value=2.9e-09  Score=79.15  Aligned_cols=73  Identities=22%  Similarity=0.399  Sum_probs=57.1

Q ss_pred             EEeecCCce------------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHh-hhhcc
Q 043063          164 LVDVGGSAG------------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMK-WVLTT  215 (301)
Q Consensus       164 vlDvGgG~g------------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~-~vlh~  215 (301)
                      |||+|||+|                  +++|+ +++++.+++     ..+++++.+|+.+- ++.  .|+|+++ .++|+
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~   80 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH   80 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence            799999995                  45687 777777654     24899999999763 322  5999995 55999


Q ss_pred             CChHHHHHHHHHHHHhCCCCC
Q 043063          216 WTDDECKLIMENCYKAIPAGG  236 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg  236 (301)
                      +++++..++|+++++.|+|||
T Consensus        81 ~~~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   81 LSPEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             SSHHHHHHHHHHHHHTEEEEE
T ss_pred             CCHHHHHHHHHHHHHHhCCCC
Confidence            999999999999999999987

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.73  E-value=1.3e-07  Score=78.29  Aligned_cols=93  Identities=15%  Similarity=0.072  Sum_probs=74.7

Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                      .|+|++.+++|-.+-+.+..+++.+.++|+|||.|++.-++..++.-.++.   -..+|..... .......|+.+++.+
T Consensus       103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~S---N~~FD~sLr~-rdp~~GiRD~e~v~~  178 (204)
T PF06080_consen  103 FDAIFCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSES---NAAFDASLRS-RDPEWGIRDIEDVEA  178 (204)
T ss_pred             cceeeehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcH---HHHHHHHHhc-CCCCcCccCHHHHHH
Confidence            399999999999999999999999999999999999999988765211111   1234544443 234577899999999


Q ss_pred             HHHhCCCCceEEEEccC
Q 043063          284 LGFSAGFPHLRLYRVLD  300 (301)
Q Consensus       284 ~l~~aGf~~~~~~~~~~  300 (301)
                      +.+++||+..++++++-
T Consensus       179 lA~~~GL~l~~~~~MPA  195 (204)
T PF06080_consen  179 LAAAHGLELEEDIDMPA  195 (204)
T ss_pred             HHHHCCCccCcccccCC
Confidence            99999999999988874

The function of this family is unknown.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.71  E-value=8.6e-08  Score=78.88  Aligned_cols=108  Identities=19%  Similarity=0.255  Sum_probs=78.2

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCC-cccEeeHhhhhccCChH
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDD  219 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~~D~v~~~~vlh~~~d~  219 (301)
                      ...+|||+|||+|             +.+|+ |.+++.+++     .-+++++.+|.++..+ ..|+|++...+|..++.
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~~~   98 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLEDD   98 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCcch
Confidence            3468999999996             45787 777776654     2368889999876543 36999998887766542


Q ss_pred             H-------------------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHH
Q 043063          220 E-------------------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQE  280 (301)
Q Consensus       220 ~-------------------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e  280 (301)
                      .                   ..++|+++.+.|+|||++++++....                              ...+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~------------------------------~~~~  148 (179)
T TIGR00537        99 LRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN------------------------------GEPD  148 (179)
T ss_pred             hcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC------------------------------ChHH
Confidence            1                   35789999999999999998875222                              2455


Q ss_pred             HHHHHHhCCCCceEEEE
Q 043063          281 FKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       281 ~~~~l~~aGf~~~~~~~  297 (301)
                      +.+++++.||....+..
T Consensus       149 ~~~~l~~~gf~~~~~~~  165 (179)
T TIGR00537       149 TFDKLDERGFRYEIVAE  165 (179)
T ss_pred             HHHHHHhCCCeEEEEEE
Confidence            66777778887766543

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PTZ00146 fibrillarin; Provisional

Probab=98.64  E-value=3.5e-07  Score=79.99  Aligned_cols=117  Identities=18%  Similarity=0.197  Sum_probs=76.4

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hH----HHhhCCCCCceeEEeCCCCccC------CcccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PE----VVAEAPSIPGVTHIGGDMFKSI------PAADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~----v~~~a~~~~ri~~~~gd~~~~~------p~~D~v~~~  210 (301)
                      +++..+|||+|||+|                +.+|. |.    +++.+.+..+|.++.+|+..+.      +..|+|++.
T Consensus       130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D  209 (293)
T PTZ00146        130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD  209 (293)
T ss_pred             cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence            667789999999995                23576 33    5566666688999999986541      225998776


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      ..   .+| +...++.++++.|+|||+++|.-....-+....|.                    ++-.+|. ++|+++||
T Consensus       210 va---~pd-q~~il~~na~r~LKpGG~~vI~ika~~id~g~~pe--------------------~~f~~ev-~~L~~~GF  264 (293)
T PTZ00146        210 VA---QPD-QARIVALNAQYFLKNGGHFIISIKANCIDSTAKPE--------------------VVFASEV-QKLKKEGL  264 (293)
T ss_pred             CC---Ccc-hHHHHHHHHHHhccCCCEEEEEEeccccccCCCHH--------------------HHHHHHH-HHHHHcCC
Confidence            53   233 34566678999999999999832211111011110                    0112445 78899999


Q ss_pred             CceEEEEcc
Q 043063          291 PHLRLYRVL  299 (301)
Q Consensus       291 ~~~~~~~~~  299 (301)
                      +.++.+.+.
T Consensus       265 ~~~e~v~L~  273 (293)
T PTZ00146        265 KPKEQLTLE  273 (293)
T ss_pred             ceEEEEecC
Confidence            999888764

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=98.62  E-value=3.8e-08  Score=84.59  Aligned_cols=125  Identities=18%  Similarity=0.280  Sum_probs=75.8

Q ss_pred             CcceEEeecCCc------------------eeeeeh-hHHHhhCCC----CC--ceeEEeCCCCcc---CC--c--c--c
Q 043063          160 GVKRLVDVGGSA------------------GINFDL-PEVVAEAPS----IP--GVTHIGGDMFKS---IP--A--A--D  205 (301)
Q Consensus       160 ~~~~vlDvGgG~------------------g~~~Dl-p~v~~~a~~----~~--ri~~~~gd~~~~---~p--~--~--D  205 (301)
                      +.+.+||||||.                  .+-.|. |-++++++.    .+  +..++.+|+.++   +.  .  .  |
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            678999999999                  133487 888888764    23  489999999976   22  2  1  3


Q ss_pred             -----EeeHhhhhccCCh-HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHH
Q 043063          206 -----AIFMKWVLTTWTD-DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQ  279 (301)
Q Consensus       206 -----~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~  279 (301)
                           .+++..+||+.+| ++...++++++++|.||+.|.|...+.+..+  ...   ....++.-.+  ......||.+
T Consensus       148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d~~p--~~~---~~~~~~~~~~--~~~~~~Rs~~  220 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDDGAP--ERA---EALEAVYAQA--GSPGRPRSRE  220 (267)
T ss_dssp             TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-TTSH--HHH---HHHHHHHHHC--CS----B-HH
T ss_pred             CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCCCCH--HHH---HHHHHHHHcC--CCCceecCHH
Confidence                 8999999999988 7789999999999999999999999776432  111   1122222222  3457789999


Q ss_pred             HHHHHHHhCCCCce
Q 043063          280 EFKQLGFSAGFPHL  293 (301)
Q Consensus       280 e~~~~l~~aGf~~~  293 (301)
                      |+.++|.  ||..+
T Consensus       221 ei~~~f~--g~elv  232 (267)
T PF04672_consen  221 EIAAFFD--GLELV  232 (267)
T ss_dssp             HHHHCCT--TSEE-
T ss_pred             HHHHHcC--CCccC
Confidence            9999996  77654

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.60  E-value=6.4e-08  Score=79.80  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=67.6

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEe
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAI  207 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v  207 (301)
                      ..++.+++ .-...++||+|||.|             +.+|. +..++.+.+     .-.|+....|+.+. ++. .|+|
T Consensus        20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I   98 (192)
T PF03848_consen   20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFI   98 (192)
T ss_dssp             HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEE
T ss_pred             HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEE
Confidence            34455554 445689999999996             56787 444444321     23488899998765 554 5999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +...|+++++.+...++++++.++++|||.+++...+.
T Consensus        99 ~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~  136 (192)
T PF03848_consen   99 VSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFME  136 (192)
T ss_dssp             EEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB-
T ss_pred             EEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEecc
Confidence            99899999999999999999999999999988865543

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=98.59  E-value=2.2e-07  Score=77.49  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=78.5

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc---CCc--ccEeeHhhhhccCChH
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTWTDD  219 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~~d~  219 (301)
                      ...+|||||||+|              +++|. ++.++.+++ .+++++.+|+.+.   ++.  .|+|++.+++|+++|.
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~   91 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP   91 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence            4568999999996              45676 666666543 4688888888652   333  5999999999999875


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh----------ccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE----------GDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~----------~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                        .++|+++.+.++   .+++.-+...    . ........          +.....  ........+.+++.++++++|
T Consensus        92 --~~~l~e~~r~~~---~~ii~~p~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~ll~~~G  159 (194)
T TIGR02081        92 --EEILDEMLRVGR---HAIVSFPNFG----Y-WRVRWSILTKGRMPVTGELPYDWY--NTPNIHFCTIADFEDLCGELN  159 (194)
T ss_pred             --HHHHHHHHHhCC---eEEEEcCChh----H-HHHHHHHHhCCccccCCCCCcccc--CCCCcccCcHHHHHHHHHHCC
Confidence              478888887654   3333211100    0 00000000          000000  011123568999999999999


Q ss_pred             CCceEEEEc
Q 043063          290 FPHLRLYRV  298 (301)
Q Consensus       290 f~~~~~~~~  298 (301)
                      |++++..-.
T Consensus       160 f~v~~~~~~  168 (194)
T TIGR02081       160 LRILDRAAF  168 (194)
T ss_pred             CEEEEEEEe
Confidence            999887654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.56  E-value=2e-07  Score=85.06  Aligned_cols=92  Identities=14%  Similarity=0.202  Sum_probs=68.1

Q ss_pred             HhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCccCCc-
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~~p~-  203 (301)
                      -+++.++ .....+|||+|||+|               +.+|. +.+++.+++         ..+++++.+|.++.++. 
T Consensus       219 llL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~  297 (378)
T PRK15001        219 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  297 (378)
T ss_pred             HHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCC
Confidence            3444554 333469999999996               46687 566666543         13789999999877543 


Q ss_pred             -ccEeeHhhhhc---cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          204 -ADAIFMKWVLT---TWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       204 -~D~v~~~~vlh---~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       .|+|+++--+|   .+++..+.++++.+++.|+|||++++.-
T Consensus       298 ~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~  340 (378)
T PRK15001        298 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  340 (378)
T ss_pred             CEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence             59999975555   3566677899999999999999998884

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.51  E-value=4.9e-07  Score=78.04  Aligned_cols=126  Identities=20%  Similarity=0.281  Sum_probs=85.3

Q ss_pred             CcceEEeecCCce-----------------eeeeh-hHHHhhCCC------C-CceeEEeCCCCcc------CCcccEee
Q 043063          160 GVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS------I-PGVTHIGGDMFKS------IPAADAIF  208 (301)
Q Consensus       160 ~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~------~-~ri~~~~gd~~~~------~p~~D~v~  208 (301)
                      ...+||||.||+|                 .+.|. |..++.+++      . +-++|..+|.|+.      .|..++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            5689999999996                 23354 444554432      2 4459999999975      24459999


Q ss_pred             HhhhhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh----ccHHHHhhhhccccccCHHHHHH
Q 043063          209 MKWVLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE----GDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       209 ~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~----~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                      .+.++..|+|.+ +...|+.+++++.|||.|+-.---.+.+.+  -++..+.+    .+..|        +.||+.|+.+
T Consensus       215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle--~IAr~LtsHr~g~~WvM--------RrRsq~EmD~  284 (311)
T PF12147_consen  215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQLE--MIARVLTSHRDGKAWVM--------RRRSQAEMDQ  284 (311)
T ss_pred             EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH--HHHHHHhcccCCCceEE--------EecCHHHHHH
Confidence            999999999976 445799999999999988765532221111  01111111    11111        3479999999


Q ss_pred             HHHhCCCCceEE
Q 043063          284 LGFSAGFPHLRL  295 (301)
Q Consensus       284 ~l~~aGf~~~~~  295 (301)
                      +++++||...+.
T Consensus       285 Lv~~aGF~K~~q  296 (311)
T PF12147_consen  285 LVEAAGFEKIDQ  296 (311)
T ss_pred             HHHHcCCchhhh
Confidence            999999986553

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.51  E-value=1.5e-07  Score=78.79  Aligned_cols=130  Identities=21%  Similarity=0.275  Sum_probs=86.3

Q ss_pred             ceEEeecCCce-ee----------------eeh-hHHHhhCCC-----CCceeEEeCCCCcc-C----Ccc--cEeeHhh
Q 043063          162 KRLVDVGGSAG-IN----------------FDL-PEVVAEAPS-----IPGVTHIGGDMFKS-I----PAA--DAIFMKW  211 (301)
Q Consensus       162 ~~vlDvGgG~g-~~----------------~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~----p~~--D~v~~~~  211 (301)
                      .+|++||||.| ++                .|- |..++..++     ..|+.--..|+..+ .    +.+  |++++..
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF  152 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF  152 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence            38999999997 22                354 555555443     25666666676654 2    123  9999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccc---ccCHHHHHHHHHhC
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK---HMTEQEFKQLGFSA  288 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~---~rt~~e~~~~l~~a  288 (301)
                      +|-..+++.....++++++.|+|||.|+..|...-+-..  -.......++-+.-+  ..+|-   -.+.+++.++|.++
T Consensus       153 vLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~Dlaq--lRF~~~~~i~~nfYV--RgDGT~~YfF~~eeL~~~f~~a  228 (264)
T KOG2361|consen  153 VLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQ--LRFKKGQCISENFYV--RGDGTRAYFFTEEELDELFTKA  228 (264)
T ss_pred             EEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHH--HhccCCceeecceEE--ccCCceeeeccHHHHHHHHHhc
Confidence            999999999999999999999999999999985542200  000001112211111  11222   24899999999999


Q ss_pred             CCCceEE
Q 043063          289 GFPHLRL  295 (301)
Q Consensus       289 Gf~~~~~  295 (301)
                      ||..++.
T Consensus       229 gf~~~~~  235 (264)
T KOG2361|consen  229 GFEEVQL  235 (264)
T ss_pred             ccchhcc
Confidence            9987654

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.46  E-value=1.4e-06  Score=75.46  Aligned_cols=108  Identities=23%  Similarity=0.337  Sum_probs=75.8

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhh-----
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKW-----  211 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~-----  211 (301)
                      ..+|||+|||+|               +++|. +.+++.+++      .++++++.+|+++.++.  .|+|++.-     
T Consensus        88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~  167 (251)
T TIGR03534        88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE  167 (251)
T ss_pred             CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence            468999999996               46786 777766543      25799999999876543  59998732     


Q ss_pred             -hhccCChHH------------------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc
Q 043063          212 -VLTTWTDDE------------------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK  272 (301)
Q Consensus       212 -vlh~~~d~~------------------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~  272 (301)
                       .+|.+..+.                  ...+++++.+.|+|||++++...      .                      
T Consensus       168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~------~----------------------  219 (251)
T TIGR03534       168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG------Y----------------------  219 (251)
T ss_pred             hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC------c----------------------
Confidence             222222211                  24789999999999999887321      0                      


Q ss_pred             ccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          273 GKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       273 g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                         ...+++.++|+++||+.+++..-.
T Consensus       220 ---~~~~~~~~~l~~~gf~~v~~~~d~  243 (251)
T TIGR03534       220 ---DQGEAVRALFEAAGFADVETRKDL  243 (251)
T ss_pred             ---cHHHHHHHHHHhCCCCceEEEeCC
Confidence               034678888999999988876643

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.45  E-value=2.8e-07  Score=75.89  Aligned_cols=76  Identities=21%  Similarity=0.303  Sum_probs=56.0

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC--cccEeeHhhhhccC
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP--AADAIFMKWVLTTW  216 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~~D~v~~~~vlh~~  216 (301)
                      ..+|||||||+|               +.+|. +.+++.+++      .++++++.+|+.+..+  ..|+|++.. +|++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~  121 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL  121 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence            579999999996               46687 555554432      3579999999876322  359998866 5433


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                           ..+++.+++.|+|||++++..
T Consensus       122 -----~~~~~~~~~~LkpgG~lvi~~  142 (181)
T TIGR00138       122 -----NVLLELTLNLLKVGGYFLAYK  142 (181)
T ss_pred             -----HHHHHHHHHhcCCCCEEEEEc
Confidence                 357888899999999999774

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases

Probab=98.43  E-value=1.4e-08  Score=64.68  Aligned_cols=48  Identities=33%  Similarity=0.378  Sum_probs=38.9

Q ss_pred             CCCccccccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 043063            1 MEDNECRDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLT   48 (301)
Q Consensus         1 ~~~~~a~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~   48 (301)
                      |-+++|+||||||.|+.   ++.|++||+.++...+|.++..++|+||.|+
T Consensus         1 MaLk~aveLgI~dii~~~g~~~ls~~eia~~l~~~~p~~~~~L~RimR~L~   51 (51)
T PF08100_consen    1 MALKCAVELGIPDIIHNAGGGPLSLSEIAARLPTSNPSAPPMLDRIMRLLV   51 (51)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTS-BEHHHHHHTSTCT-TTHHHHHHHHHHHHH
T ss_pred             CcHHHHHHcCcHHHHHHcCCCCCCHHHHHHHcCCCCcchHHHHHHHHHHhC
Confidence            55789999999999973   5999999999998434546779999999985

It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.40  E-value=6.8e-07  Score=75.23  Aligned_cols=83  Identities=18%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA---  203 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~---  203 (301)
                      +++.++ ..+..+|||||||+|                +.+|. |++++.+++       .++++++.+|..+.++.   
T Consensus        64 ~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~  142 (205)
T PRK13944         64 MCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAP  142 (205)
T ss_pred             HHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCC
Confidence            444443 556689999999996                35677 777766553       24699999999865442   


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      .|+|++...++++++        ++.+.|+|||+|++.-
T Consensus       143 fD~Ii~~~~~~~~~~--------~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        143 FDAIIVTAAASTIPS--------ALVRQLKDGGVLVIPV  173 (205)
T ss_pred             ccEEEEccCcchhhH--------HHHHhcCcCcEEEEEE
Confidence            599999988876653        4667899999998743

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.39  E-value=7.4e-07  Score=74.08  Aligned_cols=131  Identities=17%  Similarity=0.197  Sum_probs=88.7

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---CceeEEe-CCCCcc-CC-cccEee
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---PGVTHIG-GDMFKS-IP-AADAIF  208 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~ri~~~~-gd~~~~-~p-~~D~v~  208 (301)
                      .+++...+ ..+.+++||+|||+|             +++|+ ..++++|.+.   +....-. .+|..+ .+ ..|+|.
T Consensus       115 ~emI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~  193 (287)
T COG4976         115 AEMIGKAD-LGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIV  193 (287)
T ss_pred             HHHHHhcc-CCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchh
Confidence            34444553 445899999999996             58898 6788888763   2211111 123332 23 369999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC--hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE--SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~--~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      ...||-++.+-+  .++--+...|+|||.+...-...++..+.  .|..                 -.--++.-.+++++
T Consensus       194 AaDVl~YlG~Le--~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l~ps~-----------------RyAH~~~YVr~~l~  254 (287)
T COG4976         194 AADVLPYLGALE--GLFAGAAGLLAPGGLFAFSVETLPDDGGFVLGPSQ-----------------RYAHSESYVRALLA  254 (287)
T ss_pred             hhhHHHhhcchh--hHHHHHHHhcCCCceEEEEecccCCCCCeecchhh-----------------hhccchHHHHHHHH
Confidence            999999998854  88999999999999877665544433210  1110                 01116778899999


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      ..||.++++.+++
T Consensus       255 ~~Gl~~i~~~~tt  267 (287)
T COG4976         255 ASGLEVIAIEDTT  267 (287)
T ss_pred             hcCceEEEeeccc
Confidence            9999999998875

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.38  E-value=4e-07  Score=75.70  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=43.8

Q ss_pred             CceeEEeCCCCcc-CC-c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          188 PGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       188 ~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      .+|+|..+|..+. .+ . .|+|+|++||-+++++...+++++++++|+|||.|++-....
T Consensus       118 ~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~sE~  178 (196)
T PF01739_consen  118 KMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGHSES  178 (196)
T ss_dssp             TTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-TT--
T ss_pred             CceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEecCcc
Confidence            6899999999983 22 2 499999999999999999999999999999999999887643

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.37  E-value=1.8e-06  Score=72.79  Aligned_cols=82  Identities=21%  Similarity=0.379  Sum_probs=58.7

Q ss_pred             CCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------CCc--ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA--ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~p~--~D~v~~~  210 (301)
                      +++..+|||||||+|                +.+|+.++    ....+++++.+|+.+.         ++.  .|+|++.
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~  124 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMSD  124 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEecC
Confidence            456679999999996                34565332    1235799999999873         222  4999987


Q ss_pred             hhhccCChHH---------HHHHHHHHHHhCCCCCEEEEecc
Q 043063          211 WVLTTWTDDE---------CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       211 ~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ...|...+..         ...+|+.+++.|+|||++++...
T Consensus       125 ~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~  166 (209)
T PRK11188        125 MAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF  166 (209)
T ss_pred             CCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence            7665543321         24689999999999999999764

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.37  E-value=1.1e-06  Score=79.43  Aligned_cols=92  Identities=16%  Similarity=0.220  Sum_probs=66.1

Q ss_pred             hhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc-ccEee
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA-ADAIF  208 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~-~D~v~  208 (301)
                      ++..++ .....+|||+|||+|               +.+|. +.+++.+++     .-..+++.+|.++..+. .|+|+
T Consensus       188 Ll~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlIv  266 (342)
T PRK09489        188 LLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMII  266 (342)
T ss_pred             HHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEEE
Confidence            344443 223458999999996               35677 566666653     12456788888776544 59999


Q ss_pred             HhhhhccC---ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MKWVLTTW---TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vlh~~---~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ++-.+|+.   +.+...++++++.+.|+|||+++|+-.
T Consensus       267 sNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan  304 (342)
T PRK09489        267 SNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (342)
T ss_pred             ECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence            99989863   344567999999999999999887654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.36  E-value=9.1e-07  Score=74.86  Aligned_cols=85  Identities=18%  Similarity=0.269  Sum_probs=61.4

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c-
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A-  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~-  203 (301)
                      ..++..++ ..+..+|||||||+|                +.+|. |++++.+++      ..+|+++.+|.....+ . 
T Consensus        66 ~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~  144 (212)
T PRK13942         66 AIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENA  144 (212)
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCC
Confidence            34455554 677789999999995                34676 777776654      2589999999886533 2 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       .|+|++....+..+        +.+.+.|+|||++++..
T Consensus       145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             CcCEEEECCCcccch--------HHHHHhhCCCcEEEEEE
Confidence             49999877665443        35667899999988853

>PRK14968 putative methyltransferase; Provisional

Probab=98.36  E-value=3.8e-06  Score=69.28  Aligned_cols=109  Identities=20%  Similarity=0.297  Sum_probs=74.0

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCc-eeEEeCCCCccCCc--ccEeeHhhhhc
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPG-VTHIGGDMFKSIPA--ADAIFMKWVLT  214 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~r-i~~~~gd~~~~~p~--~D~v~~~~vlh  214 (301)
                      .+..++||+|||+|             +.+|. |.+++.+++       .++ +.++.+|+.+.++.  .|+|++...++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~  101 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL  101 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence            34578999999996             46787 777766543       123 89999999877554  59998754332


Q ss_pred             cC-----------------C--hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccc
Q 043063          215 TW-----------------T--DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH  275 (301)
Q Consensus       215 ~~-----------------~--d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~  275 (301)
                      ..                 .  ......+++++.+.|+|||++++......                             
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~-----------------------------  152 (188)
T PRK14968        102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLT-----------------------------  152 (188)
T ss_pred             CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccC-----------------------------
Confidence            21                 1  12245789999999999998887643110                             


Q ss_pred             cCHHHHHHHHHhCCCCceEEEE
Q 043063          276 MTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       276 rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                       ..+++.++++++||++..+..
T Consensus       153 -~~~~l~~~~~~~g~~~~~~~~  173 (188)
T PRK14968        153 -GEDEVLEYLEKLGFEAEVVAE  173 (188)
T ss_pred             -CHHHHHHHHHHCCCeeeeeee
Confidence             234567788888887766543

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=98.35  E-value=4.5e-06  Score=68.24  Aligned_cols=130  Identities=19%  Similarity=0.226  Sum_probs=83.0

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc---CCc--ccEeeHhhhhccCC
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~~  217 (301)
                      .++..||||+|||.|              .++|+ ++-+..+. ...+.++.+|+.+.   +|.  .|.|+++++|....
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv-~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~   89 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV-ARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVR   89 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH-HcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHh
Confidence            346799999999995              45555 33232221 35788999999875   565  39999999999987


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCC--------CCChHHh--hhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDD--------SNESQRT--RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~--------~~~~~~~--~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                      +.+  ++|+++.+.   |.+.+|.=+-...=        .+.-|..  -...|+|       +++=...|..++++++++
T Consensus        90 ~P~--~vL~EmlRV---gr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYd-------TPNih~~Ti~DFe~lc~~  157 (193)
T PF07021_consen   90 RPD--EVLEEMLRV---GRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYD-------TPNIHLCTIKDFEDLCRE  157 (193)
T ss_pred             HHH--HHHHHHHHh---cCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccC-------CCCcccccHHHHHHHHHH
Confidence            764  778887655   65555543311000        0000000  0112233       444455699999999999


Q ss_pred             CCCCceEEEEccC
Q 043063          288 AGFPHLRLYRVLD  300 (301)
Q Consensus       288 aGf~~~~~~~~~~  300 (301)
                      .|+++.+-..+..
T Consensus       158 ~~i~I~~~~~~~~  170 (193)
T PF07021_consen  158 LGIRIEERVFLDG  170 (193)
T ss_pred             CCCEEEEEEEEcC
Confidence            9999998877643

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.34  E-value=1e-06  Score=72.87  Aligned_cols=79  Identities=24%  Similarity=0.328  Sum_probs=59.5

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CC-cccEeeHhhhhc
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IP-AADAIFMKWVLT  214 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p-~~D~v~~~~vlh  214 (301)
                      +...+|||||||+|               +.+|. +.+++.+++      .++++++.+|+.+. .. ..|+|++..+  
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--  121 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--  121 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc--
Confidence            34689999999996               46787 677766653      24599999998664 22 2599998652  


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          215 TWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        .+  ...+++++++.|+|||++++.+.
T Consensus       122 --~~--~~~~l~~~~~~LkpGG~lv~~~~  146 (187)
T PRK00107        122 --AS--LSDLVELCLPLLKPGGRFLALKG  146 (187)
T ss_pred             --cC--HHHHHHHHHHhcCCCeEEEEEeC
Confidence              22  35899999999999999998864

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.33  E-value=1.2e-06  Score=66.97  Aligned_cols=79  Identities=18%  Similarity=0.337  Sum_probs=57.6

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-cccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-AADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~~D~v~~~~  211 (301)
                      .....++||+|||+|               +.+|. +..++.+++      ..+++++.+|....   .+ ..|+|++..
T Consensus        17 ~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        17 LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            455679999999995               46787 666665542      35789998887532   22 359998865


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      ..+     ...++++.+++.|+|||++++.
T Consensus        97 ~~~-----~~~~~l~~~~~~Lk~gG~li~~  121 (124)
T TIGR02469        97 SGG-----LLQEILEAIWRRLRPGGRIVLN  121 (124)
T ss_pred             cch-----hHHHHHHHHHHHcCCCCEEEEE
Confidence            432     3358999999999999998864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.32  E-value=1e-06  Score=74.59  Aligned_cols=120  Identities=23%  Similarity=0.284  Sum_probs=83.6

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCC---C---------------CCceeEEeCCCCccCCc--
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAP---S---------------IPGVTHIGGDMFKSIPA--  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~---~---------------~~ri~~~~gd~~~~~p~--  203 (301)
                      .....+||..|||.|             +++|+ |..++.+.   .               .++|++..+|||+.-+.  
T Consensus        35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~  114 (218)
T PF05724_consen   35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDV  114 (218)
T ss_dssp             TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCH
T ss_pred             CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhc
Confidence            445679999999994             68898 66665541   0               25799999999985332  


Q ss_pred             --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHH
Q 043063          204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~  281 (301)
                        .|+|+=...|+-++++...+..+++++.|+|||+++++-...+.....+|..                   ..+.+|+
T Consensus       115 g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~~GPPf-------------------~v~~~ev  175 (218)
T PF05724_consen  115 GKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEMEGPPF-------------------SVTEEEV  175 (218)
T ss_dssp             HSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCSSSSS-----------------------HHHH
T ss_pred             CCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCCCCcCC-------------------CCCHHHH
Confidence              4999999999999999999999999999999999544443333221112221                   1278899


Q ss_pred             HHHHHhCCCCceEEEE
Q 043063          282 KQLGFSAGFPHLRLYR  297 (301)
Q Consensus       282 ~~~l~~aGf~~~~~~~  297 (301)
                      .++|. .+|++..+..
T Consensus       176 ~~l~~-~~f~i~~l~~  190 (218)
T PF05724_consen  176 RELFG-PGFEIEELEE  190 (218)
T ss_dssp             HHHHT-TTEEEEEEEE
T ss_pred             HHHhc-CCcEEEEEec
Confidence            99988 6787766553

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.29  E-value=4.3e-06  Score=72.56  Aligned_cols=99  Identities=23%  Similarity=0.293  Sum_probs=66.8

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC-------CceeEEeCCCCccCCcccEeeHhhhhccC
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPAADAIFMKWVLTTW  216 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-------~ri~~~~gd~~~~~p~~D~v~~~~vlh~~  216 (301)
                      .+..+|||||||+|              +++|. |.+++.+++.       +++.+..+|.     ..|+|++...    
T Consensus       118 ~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-----~fD~Vvani~----  188 (250)
T PRK00517        118 LPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-----KADVIVANIL----  188 (250)
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-----CcCEEEEcCc----
Confidence            35689999999995              46787 7777766541       3344433332     3588886532    


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                       .+....+++++.+.|+|||++++......                              ..+++.+.+++.||++.++.
T Consensus       189 -~~~~~~l~~~~~~~LkpgG~lilsgi~~~------------------------------~~~~v~~~l~~~Gf~~~~~~  237 (250)
T PRK00517        189 -ANPLLELAPDLARLLKPGGRLILSGILEE------------------------------QADEVLEAYEEAGFTLDEVL  237 (250)
T ss_pred             -HHHHHHHHHHHHHhcCCCcEEEEEECcHh------------------------------hHHHHHHHHHHCCCEEEEEE
Confidence             23346789999999999999998654221                              24566777788888877665


Q ss_pred             E
Q 043063          297 R  297 (301)
Q Consensus       297 ~  297 (301)
                      .
T Consensus       238 ~  238 (250)
T PRK00517        238 E  238 (250)
T ss_pred             E
Confidence            4

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=98.27  E-value=1.4e-06  Score=71.04  Aligned_cols=84  Identities=23%  Similarity=0.392  Sum_probs=61.9

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c-ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A-ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~  215 (301)
                      ...++||+|||+|               +.+|. +..++.+++      .+.++++..|.++..+ . .|+|++.--+|.
T Consensus        31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSNPPFHA  110 (170)
T ss_dssp             TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE---SBT
T ss_pred             cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEccchhc
Confidence            4578999999996               35676 666666543      2339999999998866 3 599999988776


Q ss_pred             CCh---HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          216 WTD---DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       216 ~~d---~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      -.+   +-..++++.+.+.|+|||+++++-.
T Consensus       111 ~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~  141 (170)
T PF05175_consen  111 GGDDGLDLLRDFIEQARRYLKPGGRLFLVIN  141 (170)
T ss_dssp             TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence            554   3467999999999999999866443

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=98.23  E-value=2.9e-06  Score=71.89  Aligned_cols=83  Identities=20%  Similarity=0.327  Sum_probs=59.5

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC---c
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP---A  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~  203 (301)
                      .++..++ .++..+|||||||+|                +.+|. |++++.+++      .++++++.+|..+..+   .
T Consensus        68 ~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~  146 (215)
T TIGR00080        68 MMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAP  146 (215)
T ss_pred             HHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCC
Confidence            3444554 667789999999995                34575 777776653      2689999999976533   2


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .|+|++....+.        +.+.+.+.|+|||++++.
T Consensus       147 fD~Ii~~~~~~~--------~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       147 YDRIYVTAAGPK--------IPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCEEEEcCCccc--------ccHHHHHhcCcCcEEEEE
Confidence            599998765443        345577889999998875

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.22  E-value=9.3e-06  Score=71.36  Aligned_cols=108  Identities=25%  Similarity=0.343  Sum_probs=72.3

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC--cccEeeHhh--
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP--AADAIFMKW--  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~~D~v~~~~--  211 (301)
                      ..+..+|||+|||+|               +++|. +..++.+++      ..+++++.+|++++.+  ..|+|++.-  
T Consensus       106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            345678999999996               45686 666655543      3589999999987754  259988732  


Q ss_pred             ----hhccCCh------------------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhh
Q 043063          212 ----VLTTWTD------------------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY  269 (301)
Q Consensus       212 ----vlh~~~d------------------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~  269 (301)
                          .++..++                  +...++++++.+.|+|||++++. .    . .                   
T Consensus       186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e-~----g-~-------------------  240 (275)
T PRK09328        186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE-I----G-Y-------------------  240 (275)
T ss_pred             CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE-E----C-c-------------------
Confidence                1111111                  12357899999999999998871 1    0 0                   


Q ss_pred             hccccccCHHHHHHHHHhCCCCceEEE
Q 043063          270 RAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       270 ~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                            ...+++.+++++.||+.+++.
T Consensus       241 ------~~~~~~~~~l~~~gf~~v~~~  261 (275)
T PRK09328        241 ------DQGEAVRALLAAAGFADVETR  261 (275)
T ss_pred             ------hHHHHHHHHHHhCCCceeEEe
Confidence                  023457888888999866654

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.21  E-value=1.5e-06  Score=72.94  Aligned_cols=84  Identities=14%  Similarity=0.213  Sum_probs=59.3

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc----CCc--ccEeeHhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA--ADAIFMKW  211 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p~--~D~v~~~~  211 (301)
                      ...+|||||||+|               +.+|. +++++.+++      .++++++.+|+.+.    ++.  .|+|++..
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            4578999999996               46787 777766543      36899999998322    333  49888765


Q ss_pred             hhccCC------hHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          212 VLTTWT------DDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       212 vlh~~~------d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..+...      ......+|+++++.|+|||.+++...
T Consensus       120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~  157 (202)
T PRK00121        120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD  157 (202)
T ss_pred             CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence            432111      11135799999999999999998653

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.19  E-value=7e-06  Score=69.63  Aligned_cols=88  Identities=8%  Similarity=-0.032  Sum_probs=70.9

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCC------------------CCCceeEEeCCCCccCC----
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAP------------------SIPGVTHIGGDMFKSIP----  202 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~------------------~~~ri~~~~gd~~~~~p----  202 (301)
                      ....+||+.|||.|             +++|+ |..++.+.                  +..+|++..+|+|+.-+    
T Consensus        42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            34579999999994             68898 55555531                  13589999999998622    


Q ss_pred             --cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          203 --AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       203 --~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                        ..|+|+=+.+|+.++++...+..+++.+.|+|||+++++....+
T Consensus       122 ~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~~  167 (226)
T PRK13256        122 LPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEHD  167 (226)
T ss_pred             cCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEecC
Confidence              24999999999999999999999999999999999888865433

>PRK14967 putative methyltransferase; Provisional

Probab=98.19  E-value=1.5e-05  Score=67.96  Aligned_cols=88  Identities=16%  Similarity=0.178  Sum_probs=60.7

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc--ccEeeHhhhhcc
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTT  215 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~  215 (301)
                      .....+|||+|||+|              +++|. |..++.+++     ..+++++.+|+.+.++.  .|+|++.--.+.
T Consensus        34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~  113 (223)
T PRK14967         34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYVP  113 (223)
T ss_pred             cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCCC
Confidence            445679999999995              46787 666665443     13688999998765543  499998632221


Q ss_pred             CCh-------------------HHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          216 WTD-------------------DECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       216 ~~d-------------------~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      -++                   ....++++++.+.|+|||+++++....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~  162 (223)
T PRK14967        114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL  162 (223)
T ss_pred             CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            111                   113568899999999999999876544

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.19  E-value=9.3e-06  Score=67.91  Aligned_cols=78  Identities=19%  Similarity=0.372  Sum_probs=57.8

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C-CcccEeeH
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I-PAADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~-p~~D~v~~  209 (301)
                      .....+|||+|||+|                +.+|. |.+++.+++       .++++++.+|+.+.   . +..|+|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            566789999999995                45687 777775542       36899999998653   2 23599887


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      ..     ...+...+|+.+.+.|+|||++++
T Consensus       118 ~~-----~~~~~~~~l~~~~~~LkpgG~lv~  143 (198)
T PRK00377        118 GG-----GSEKLKEIISASWEIIKKGGRIVI  143 (198)
T ss_pred             CC-----CcccHHHHHHHHHHHcCCCcEEEE
Confidence            43     223346899999999999999986

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.18  E-value=3e-06  Score=71.03  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=32.5

Q ss_pred             CCcccEeeHhhh---hc-cCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          201 IPAADAIFMKWV---LT-TWTDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       201 ~p~~D~v~~~~v---lh-~~~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      .|..|+|+|-.+   +| +|.|+-..++++++++.|.|||.|++
T Consensus       164 ~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvv  207 (288)
T KOG2899|consen  164 QPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVV  207 (288)
T ss_pred             cccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEE
Confidence            455688877544   34 79999999999999999999997764

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=98.14  E-value=7e-06  Score=72.21  Aligned_cols=56  Identities=18%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             CceeEEeCCCCcc-CC--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          188 PGVTHIGGDMFKS-IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       188 ~ri~~~~gd~~~~-~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .+|+|..+|..++ +|  . .|+|+|.++|.+++++...+++++++++|+|||.|++-..
T Consensus       204 ~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~s  263 (287)
T PRK10611        204 NYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGHS  263 (287)
T ss_pred             ccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            5789999999985 44  2 4999999999999999999999999999999999888765

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.14  E-value=3.2e-06  Score=76.04  Aligned_cols=161  Identities=14%  Similarity=0.184  Sum_probs=93.8

Q ss_pred             HHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCC----------
Q 043063          133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI----------  187 (301)
Q Consensus       133 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~----------  187 (301)
                      .+.|+.++...   .+...++....-.+..+|||+|||.|              +++|+ +..+++|+++          
T Consensus        38 lR~fNNwvKs~---LI~~~~~~~~~~~~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~  114 (331)
T PF03291_consen   38 LRNFNNWVKSV---LIQKYAKKVKQNRPGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNS  114 (331)
T ss_dssp             HHHHHHHHHHH---HHHHHCHCCCCTTTT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-
T ss_pred             HHHHhHHHHHH---HHHHHHHhhhccCCCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhcccccc
Confidence            56777777532   23333332211125689999999985              67898 5666665421          


Q ss_pred             ------CceeEEeCCCCcc-----CC-c---ccEeeHhhhhcc-C-ChHHHHHHHHHHHHhCCCCCEEEEeccccC----
Q 043063          188 ------PGVTHIGGDMFKS-----IP-A---ADAIFMKWVLTT-W-TDDECKLIMENCYKAIPAGGKLIACEPVLP----  246 (301)
Q Consensus       188 ------~ri~~~~gd~~~~-----~p-~---~D~v~~~~vlh~-~-~d~~~~~iL~~~~~aL~pgg~lli~e~~~~----  246 (301)
                            -...|+.+|-+..     ++ .   .|+|-|...||+ | +.+.+..+|+++.+.|+|||.++..-+-.+    
T Consensus       115 ~~~~~~f~a~f~~~D~f~~~l~~~~~~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~~i~~  194 (331)
T PF03291_consen  115 KQYRFDFIAEFIAADCFSESLREKLPPRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSDEIVK  194 (331)
T ss_dssp             HTSEECCEEEEEESTTCCSHHHCTSSSTTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHC
T ss_pred             ccccccchhheeccccccchhhhhccccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHHHHHH
Confidence                  2356788888754     22 2   399999999997 4 556677899999999999999887643110    


Q ss_pred             ---C------CC---CC--------h-HHhhhhhhccHHHHhhhhcccc--ccCHHHHHHHHHhCCCCceEEEE
Q 043063          247 ---D------DS---NE--------S-QRTRALLEGDIFVMTIYRAKGK--HMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       247 ---~------~~---~~--------~-~~~~~~~~~d~~m~~~~~~~g~--~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                         +      ..   ++        . ....++..+++.+.. ...+-.  .....-+.+++++.||..+...+
T Consensus       195 ~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~-~v~~~~EYlV~~~~~~~la~eyGLeLV~~~~  267 (331)
T PF03291_consen  195 RLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLED-AVDDCPEYLVPFDFFVKLAKEYGLELVEKKN  267 (331)
T ss_dssp             CHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETT-CSSCEEEE---HHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecC-cCCCCceEEeeHHHHHHHHHHcCCEEEEeCC
Confidence               0      00   00        0 011122223332221 111222  23789999999999999887654

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.13  E-value=7.4e-06  Score=59.61  Aligned_cols=78  Identities=22%  Similarity=0.317  Sum_probs=59.7

Q ss_pred             eEEeecCCce--------------eeeeh-hHHHhhCC------CCCceeEEeCCCCccC--C--cccEeeHhhhhccCC
Q 043063          163 RLVDVGGSAG--------------INFDL-PEVVAEAP------SIPGVTHIGGDMFKSI--P--AADAIFMKWVLTTWT  217 (301)
Q Consensus       163 ~vlDvGgG~g--------------~~~Dl-p~v~~~a~------~~~ri~~~~gd~~~~~--p--~~D~v~~~~vlh~~~  217 (301)
                      +++|+|||.|              +++|. +..+..++      ...++++..+|+.+..  +  ..|++++..+++.+ 
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~-   79 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL-   79 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh-
Confidence            5899999985              45676 44444333      2468999999998763  2  25999999999875 


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          218 DDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .+....+++++.+.|+|+|.+++.
T Consensus        80 ~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          80 VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            445679999999999999998875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=98.09  E-value=3.8e-06  Score=73.88  Aligned_cols=75  Identities=23%  Similarity=0.362  Sum_probs=55.7

Q ss_pred             CcceEEeecCCce------------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG------------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g------------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~  216 (301)
                      ...+|||||||+|                  +++|+ +.+++.|++ .+++++..+|..+. ++.  .|+|+....    
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~----  160 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA----  160 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence            4468999999995                  45687 777777654 47899999998763 544  499986432    


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                       .    ..+++++++|+|||++++..+
T Consensus       161 -~----~~~~e~~rvLkpgG~li~~~p  182 (272)
T PRK11088        161 -P----CKAEELARVVKPGGIVITVTP  182 (272)
T ss_pred             -C----CCHHHHHhhccCCCEEEEEeC
Confidence             1    346788999999999998754

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.09  E-value=8.9e-06  Score=67.89  Aligned_cols=86  Identities=23%  Similarity=0.390  Sum_probs=60.2

Q ss_pred             hhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---C-Cccc
Q 043063          152 LDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---I-PAAD  205 (301)
Q Consensus       152 ~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~-p~~D  205 (301)
                      +..++ .....+|||+|||+|               +.+|. |.+++.+++      .++++++.+|..+.   + +..|
T Consensus        33 ~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~d  111 (196)
T PRK07402         33 ISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAPD  111 (196)
T ss_pred             HHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCCC
Confidence            34443 556789999999996               46787 777776653      25799999998652   2 2246


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      .+++.     . ......+|+++++.|+|||++++....
T Consensus       112 ~v~~~-----~-~~~~~~~l~~~~~~LkpgG~li~~~~~  144 (196)
T PRK07402        112 RVCIE-----G-GRPIKEILQAVWQYLKPGGRLVATASS  144 (196)
T ss_pred             EEEEE-----C-CcCHHHHHHHHHHhcCCCeEEEEEeec
Confidence            55432     1 223468999999999999999988653

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.08  E-value=9.2e-06  Score=71.83  Aligned_cols=81  Identities=26%  Similarity=0.375  Sum_probs=58.1

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHh----
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMK----  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~----  210 (301)
                      +..+|||+|||+|               +.+|. +.+++.+++       .++|+++.+|+++.++.  .|+|++.    
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~  200 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV  200 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence            3468999999996               46787 777776653       25899999999877654  4999974    


Q ss_pred             ---------hhhccCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 043063          211 ---------WVLTTWTD----------DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       211 ---------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli  240 (301)
                               ..+++.|.          +...++++.+.+.|+|||++++
T Consensus       201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                     11121111          1236889999999999998874

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.08  E-value=4.4e-06  Score=69.65  Aligned_cols=83  Identities=13%  Similarity=0.328  Sum_probs=57.7

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc----CCc--ccEeeHhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA--ADAIFMKW  211 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p~--~D~v~~~~  211 (301)
                      ...++||||||+|               +++|. +.+++.+.+      ..+|+++.+|+.+.    ++.  .|.+++..
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            3568999999996               56787 666666543      35899999998642    343  37776554


Q ss_pred             hhccCChHH-------HHHHHHHHHHhCCCCCEEEEecc
Q 043063          212 VLTTWTDDE-------CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       212 vlh~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      -. .|+...       ...+++.+++.|+|||.|++...
T Consensus        96 pd-pw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td  133 (194)
T TIGR00091        96 PD-PWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTD  133 (194)
T ss_pred             CC-cCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeC
Confidence            32 233221       14689999999999999987653

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.06  E-value=1.3e-05  Score=72.46  Aligned_cols=94  Identities=19%  Similarity=0.166  Sum_probs=64.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D  205 (301)
                      ..+++... +++..+|||+|||+|             +++|. +.+++.++.      ...+.+..+|+.+. .+.  .|
T Consensus       172 ~~~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D  250 (329)
T TIGR01177       172 RAMVNLAR-VTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD  250 (329)
T ss_pred             HHHHHHhC-CCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence            33444443 667789999999996             45687 777765543      23488999998764 332  49


Q ss_pred             EeeHhhhhc-------cCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          206 AIFMKWVLT-------TWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       206 ~v~~~~vlh-------~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +|++.--..       +...+...++|+.+++.|+|||++++.-+
T Consensus       251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~  295 (329)
T TIGR01177       251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP  295 (329)
T ss_pred             EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc
Confidence            998842111       11223346899999999999999887654

This family is found exclusively in the Archaea.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.05  E-value=1.1e-05  Score=68.08  Aligned_cols=84  Identities=21%  Similarity=0.300  Sum_probs=59.6

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---ccEe
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---ADAI  207 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~D~v  207 (301)
                      ++..++ ..+..+|||||||+|             +.+|. +.+++.+++      ..++++..+|..+.++.   .|+|
T Consensus        70 l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I  148 (212)
T PRK00312         70 MTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRI  148 (212)
T ss_pred             HHHhcC-CCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEE
Confidence            334443 566789999999996             34565 666666543      24699999998765442   5999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ++...++++        .+.+.+.|+|||++++.-.
T Consensus       149 ~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        149 LVTAAAPEI--------PRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence            988766544        3456789999999887644

>PRK04457 spermidine synthase; Provisional

Probab=98.01  E-value=6.8e-06  Score=71.76  Aligned_cols=83  Identities=17%  Similarity=0.276  Sum_probs=61.0

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEeeHhh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIFMKW  211 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~~~~  211 (301)
                      +.+.+|||||||+|               +++|+ |++++.+++       .+|++++.+|..+.   .+. .|+|++-.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~  144 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG  144 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence            35678999999995               57798 888887753       37899999998653   343 59998742


Q ss_pred             hhcc--CChH-HHHHHHHHHHHhCCCCCEEEEec
Q 043063          212 VLTT--WTDD-ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       212 vlh~--~~d~-~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       ++.  .+.. ....+++++++.|+|||++++.-
T Consensus       145 -~~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~  177 (262)
T PRK04457        145 -FDGEGIIDALCTQPFFDDCRNALSSDGIFVVNL  177 (262)
T ss_pred             -CCCCCCccccCcHHHHHHHHHhcCCCcEEEEEc
Confidence             221  1211 12699999999999999998853

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.00  E-value=1.2e-05  Score=71.22  Aligned_cols=79  Identities=23%  Similarity=0.265  Sum_probs=56.1

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~  216 (301)
                      +..+|||||||+|              +.+|. |.+++.+++       ..++.+..++.....+. .|+|++....   
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan~~~---  235 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVANILA---  235 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEecCH---
Confidence            4589999999996              46787 666766654       24677776663322232 5999886433   


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        +....+++++++.|+|||++++...
T Consensus       236 --~~l~~ll~~~~~~LkpgG~li~sgi  260 (288)
T TIGR00406       236 --EVIKELYPQFSRLVKPGGWLILSGI  260 (288)
T ss_pred             --HHHHHHHHHHHHHcCCCcEEEEEeC
Confidence              2345889999999999999998765

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.00  E-value=1.4e-05  Score=71.41  Aligned_cols=79  Identities=24%  Similarity=0.353  Sum_probs=57.9

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhh-----
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKW-----  211 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~-----  211 (301)
                      .+|||+|||+|               +.+|. |.+++.+++       .++|+++.+|+++.+|.  .|+|++.-     
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~  214 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA  214 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence            68999999996               46787 777776653       25799999999876654  59999741     


Q ss_pred             --------hhccCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 043063          212 --------VLTTWTD----------DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       212 --------vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli  240 (301)
                              .+++.|.          +...++++++.+.|+|||++++
T Consensus       215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence                    1122221          2246889999999999998876

>PHA03411 putative methyltransferase; Provisional

Probab=97.99  E-value=2.1e-05  Score=68.30  Aligned_cols=107  Identities=13%  Similarity=0.172  Sum_probs=74.1

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccC-Cc-ccEeeHhhhhccCChHHH
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSI-PA-ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~-p~-~D~v~~~~vlh~~~d~~~  221 (301)
                      ..+|||+|||+|               +.+|+ |.+++.+++ .++++++.+|+++.. +. .|+|++.--+++.+..+.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~  144 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT  144 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence            468999999996               35687 777777665 368999999998753 23 599999877776544321


Q ss_pred             ------------------HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063          222 ------------------KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       222 ------------------~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                                        .++++.+...|+|+|.++++   .+.    .|..+                 ...+.+|+++
T Consensus       145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~---yss----~~~y~-----------------~sl~~~~y~~  200 (279)
T PHA03411        145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA---YSG----RPYYD-----------------GTMKSNKYLK  200 (279)
T ss_pred             hhhhhhccCccccccccHHHHHhhhHheecCCceEEEE---Eec----ccccc-----------------ccCCHHHHHH
Confidence                              35667777888888876666   111    11111                 1127889999


Q ss_pred             HHHhCCCC
Q 043063          284 LGFSAGFP  291 (301)
Q Consensus       284 ~l~~aGf~  291 (301)
                      +++++||.
T Consensus       201 ~l~~~g~~  208 (279)
T PHA03411        201 WSKQTGLV  208 (279)
T ss_pred             HHHhcCcE
Confidence            99999985

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=2.8e-05  Score=67.96  Aligned_cols=94  Identities=14%  Similarity=0.190  Sum_probs=67.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCC------CceeEEeCCCCccCCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~------~ri~~~~gd~~~~~p~-~D  205 (301)
                      +-+++.++ .....+|+|+|||.|               +.+|. ...++.+++.      .+..+...|.+++... .|
T Consensus       148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd  226 (300)
T COG2813         148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD  226 (300)
T ss_pred             HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence            45566665 444459999999997               34566 4455555541      3336778898888544 79


Q ss_pred             EeeHhhhhcc---CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          206 AIFMKWVLTT---WTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       206 ~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .|+++=-+|.   ..+.-+.++++.+.+.|++||.|.|+-.
T Consensus       227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan  267 (300)
T COG2813         227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN  267 (300)
T ss_pred             EEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence            9999999985   3344466999999999999998777655

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.94  E-value=4.5e-05  Score=65.19  Aligned_cols=128  Identities=19%  Similarity=0.155  Sum_probs=77.0

Q ss_pred             CcceEEeecCCceeee-------------eh-hHHHhhCCCCCceeEEeCCCCccCC-cccEeeHhhhhccCChHHHHHH
Q 043063          160 GVKRLVDVGGSAGINF-------------DL-PEVVAEAPSIPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLI  224 (301)
Q Consensus       160 ~~~~vlDvGgG~g~~~-------------Dl-p~v~~~a~~~~ri~~~~gd~~~~~p-~~D~v~~~~vlh~~~d~~~~~i  224 (301)
                      ...++||||+|-|-+-             +. +.|...-+ ..+++++..|-....+ ..|+|.|-++|-...++  ..+
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~-~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~L  170 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLS-KKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LTL  170 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHH-hCCCeEEehhhhhccCCceEEEeehhhhhccCCH--HHH
Confidence            3468999999997221             22 22322211 2455655544333223 25999999999766665  599


Q ss_pred             HHHHHHhCCCCCEEEEeccc--cC---CCC--CChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          225 MENCYKAIPAGGKLIACEPV--LP---DDS--NESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       225 L~~~~~aL~pgg~lli~e~~--~~---~~~--~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                      |+.++++|+|+|++++.=..  .+   ..+  ...|.+    .++  +    .....+-..+.+.++|+.+||++.....
T Consensus       171 L~~i~~~l~p~G~lilAvVlP~~pyVE~~~g~~~~P~e----~l~--~----~g~~~E~~v~~l~~v~~p~GF~v~~~tr  240 (265)
T PF05219_consen  171 LRDIRRALKPNGRLILAVVLPFRPYVEFGGGKSNRPSE----LLP--V----KGATFEEQVSSLVNVFEPAGFEVERWTR  240 (265)
T ss_pred             HHHHHHHhCCCCEEEEEEEecccccEEcCCCCCCCchh----hcC--C----CCCcHHHHHHHHHHHHHhcCCEEEEEec
Confidence            99999999999988775422  11   111  111221    111  1    1112222344455899999999999998


Q ss_pred             ccC
Q 043063          298 VLD  300 (301)
Q Consensus       298 ~~~  300 (301)
                      +||
T Consensus       241 ~PY  243 (265)
T PF05219_consen  241 LPY  243 (265)
T ss_pred             cCc
Confidence            886

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=97.92  E-value=2.4e-05  Score=71.38  Aligned_cols=83  Identities=17%  Similarity=0.383  Sum_probs=58.0

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCc---cCCc--ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFK---SIPA--ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~---~~p~--~D~v~~~~v  212 (301)
                      ....+||||||+|               +++|. +.+++.+.+      ..+|.++.+|+..   .+|.  .|.|++...
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP  201 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP  201 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence            3468999999996               57787 556555432      3689999999843   3554  388876432


Q ss_pred             hccCChHH-----HHHHHHHHHHhCCCCCEEEEecc
Q 043063          213 LTTWTDDE-----CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       213 lh~~~d~~-----~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      . .|+...     ...+|+.+++.|+|||.+.+..-
T Consensus       202 d-PW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD  236 (390)
T PRK14121        202 V-PWDKKPHRRVISEDFLNEALRVLKPGGTLELRTD  236 (390)
T ss_pred             C-CccccchhhccHHHHHHHHHHHcCCCcEEEEEEE
Confidence            2 244322     24789999999999999887554

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.92  E-value=1.4e-05  Score=66.10  Aligned_cols=152  Identities=16%  Similarity=0.169  Sum_probs=84.4

Q ss_pred             hhhhhHHHhhcCCCCChhhhccCCCchhccccCchHH----HHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce
Q 043063           97 SAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN----GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG  172 (301)
Q Consensus        97 ~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~----~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g  172 (301)
                      .-++.|.+.+.|.. +.       ..++.+.++|+..    +.|++.+..|.......+++.+..-+....|.|.|||.+
T Consensus        13 srFR~lNE~LYT~~-s~-------~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA   84 (219)
T PF05148_consen   13 SRFRWLNEQLYTTS-SE-------EALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDA   84 (219)
T ss_dssp             HHHHHHHHHHHHS--HH-------HHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-
T ss_pred             CchHHHHHhHhcCC-HH-------HHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchH
Confidence            34556777776543 21       1123344555443    455666666666556666665532334578999999995


Q ss_pred             e------------eeehhHHHhhCCCCCceeEEeCCCCc-cCCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCE
Q 043063          173 I------------NFDLPEVVAEAPSIPGVTHIGGDMFK-SIPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK  237 (301)
Q Consensus       173 ~------------~~Dlp~v~~~a~~~~ri~~~~gd~~~-~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~  237 (301)
                      -            -||+-..      .++  +.+.|+-. |++.  .|++++.-.|- -.+  ....|+++.+.|+|||.
T Consensus        85 ~la~~~~~~~~V~SfDLva~------n~~--Vtacdia~vPL~~~svDv~VfcLSLM-GTn--~~~fi~EA~RvLK~~G~  153 (219)
T PF05148_consen   85 KLAKAVPNKHKVHSFDLVAP------NPR--VTACDIANVPLEDESVDVAVFCLSLM-GTN--WPDFIREANRVLKPGGI  153 (219)
T ss_dssp             HHHHH--S---EEEEESS-S------STT--EEES-TTS-S--TT-EEEEEEES----SS---HHHHHHHHHHHEEEEEE
T ss_pred             HHHHhcccCceEEEeeccCC------CCC--EEEecCccCcCCCCceeEEEEEhhhh-CCC--cHHHHHHHHheeccCcE
Confidence            1            1344211      123  45567743 3444  39998888772 222  46899999999999999


Q ss_pred             EEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       238 lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      |.|.|....-.                            +.+++.+.++..||+....
T Consensus       154 L~IAEV~SRf~----------------------------~~~~F~~~~~~~GF~~~~~  183 (219)
T PF05148_consen  154 LKIAEVKSRFE----------------------------NVKQFIKALKKLGFKLKSK  183 (219)
T ss_dssp             EEEEEEGGG-S-----------------------------HHHHHHHHHCTTEEEEEE
T ss_pred             EEEEEecccCc----------------------------CHHHHHHHHHHCCCeEEec
Confidence            99999854321                            3456666777777776653

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>TIGR00438 rrmJ cell division protein FtsJ

Probab=97.91  E-value=3e-05  Score=64.27  Aligned_cols=82  Identities=21%  Similarity=0.348  Sum_probs=55.2

Q ss_pred             CCCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------CCc--ccEeeH
Q 043063          157 GFKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA--ADAIFM  209 (301)
Q Consensus       157 ~~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~p~--~D~v~~  209 (301)
                      ...+..+|||+|||+|                +.+|+.+..    ...+++++.+|+.++         .+.  .|+|++
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~  104 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----PIENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMS  104 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----cCCCceEEEeeCCChhHHHHHHHHhCCCCccEEEc
Confidence            3566789999999996                234553321    235788998998653         233  499998


Q ss_pred             hhhhc---cCCh------HHHHHHHHHHHHhCCCCCEEEEec
Q 043063          210 KWVLT---TWTD------DECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       210 ~~vlh---~~~d------~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ....|   .|.-      +...++|+.+++.|+|||++++..
T Consensus       105 ~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~  146 (188)
T TIGR00438       105 DAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV  146 (188)
T ss_pred             CCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence            54322   1111      223588999999999999999853

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=97.90  E-value=6e-06  Score=62.63  Aligned_cols=81  Identities=25%  Similarity=0.306  Sum_probs=59.7

Q ss_pred             ceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc--ccEeeHhhhhc
Q 043063          162 KRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA--ADAIFMKWVLT  214 (301)
Q Consensus       162 ~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh  214 (301)
                      .+|||+|||+|              +++|+ |..++.++.       .+|++++.+|+++.   .+.  .|+|++.--.+
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~   81 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG   81 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred             CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence            58999999996              46787 776666543       37899999999764   333  49999988776


Q ss_pred             cCCh------HHHHHHHHHHHHhCCCCCEEEEec
Q 043063          215 TWTD------DECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       215 ~~~d------~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ....      +....+++++.+.|+|||.++++-
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~  115 (117)
T PF13659_consen   82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT  115 (117)
T ss_dssp             SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence            5321      124688999999999999988763

...

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.90  E-value=1.5e-05  Score=69.64  Aligned_cols=100  Identities=20%  Similarity=0.398  Sum_probs=71.6

Q ss_pred             HHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce--------------eeeehhH-HHhhCCCC--------C-
Q 043063          133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------INFDLPE-VVAEAPSI--------P-  188 (301)
Q Consensus       133 ~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dlp~-v~~~a~~~--------~-  188 (301)
                      .+.|+.+|..       -++..|  .++...++|+|||-|              ++.|+.+ .+++|+++        . 
T Consensus        99 lRnfNNwIKs-------~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~  169 (389)
T KOG1975|consen   99 LRNFNNWIKS-------VLINLY--TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKK  169 (389)
T ss_pred             hhhhhHHHHH-------HHHHHH--hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhc
Confidence            4456666642       244544  456678999999994              6789855 46666541        2 


Q ss_pred             ---ceeEEeCCCCcc-----C----CcccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          189 ---GVTHIGGDMFKS-----I----PAADAIFMKWVLTT-WT-DDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       189 ---ri~~~~gd~~~~-----~----p~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                         .+.|+++|-+..     +    |..|+|-|.+++|+ |. .+.+..+|+++.+.|+|||.++-.
T Consensus       170 ~~f~a~f~~~Dc~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgT  236 (389)
T KOG1975|consen  170 FIFTAVFIAADCFKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGT  236 (389)
T ss_pred             ccceeEEEEeccchhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEe
Confidence               367888887743     2    23599999999996 54 566888899999999999988743

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=97.89  E-value=3.6e-05  Score=62.60  Aligned_cols=85  Identities=24%  Similarity=0.388  Sum_probs=62.1

Q ss_pred             hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---CcccEe
Q 043063          153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---PAADAI  207 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p~~D~v  207 (301)
                      ..+. ..+..+++|||||+|               +.+|. ++.++..++      .++++++.||.-+.+   |..|.+
T Consensus        28 s~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~dai  106 (187)
T COG2242          28 SKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAI  106 (187)
T ss_pred             HhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEE
Confidence            3443 677889999999996               34564 444444332      489999999986543   346999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      |+..--      ....+|+.+-..|+|||+|++.-..
T Consensus       107 FIGGg~------~i~~ile~~~~~l~~ggrlV~nait  137 (187)
T COG2242         107 FIGGGG------NIEEILEAAWERLKPGGRLVANAIT  137 (187)
T ss_pred             EECCCC------CHHHHHHHHHHHcCcCCeEEEEeec
Confidence            988752      2358999999999999999876543

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=97.89  E-value=5.4e-05  Score=63.01  Aligned_cols=107  Identities=22%  Similarity=0.341  Sum_probs=78.9

Q ss_pred             cceEEeecCCce------------eeeehhHHHhhCCCCCceeEEeCCCCcc-CCc-----ccEeeHhhhhccCCh-HHH
Q 043063          161 VKRLVDVGGSAG------------INFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-----ADAIFMKWVLTTWTD-DEC  221 (301)
Q Consensus       161 ~~~vlDvGgG~g------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~-----~D~v~~~~vlh~~~d-~~~  221 (301)
                      .-++||||+-+.            +-+|+.+.      .+  .+...||++- +|.     .|+|.++.||.+.|+ .+.
T Consensus        52 ~lrlLEVGals~~N~~s~~~~fdvt~IDLns~------~~--~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~R  123 (219)
T PF11968_consen   52 KLRLLEVGALSTDNACSTSGWFDVTRIDLNSQ------HP--GILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQR  123 (219)
T ss_pred             cceEEeecccCCCCcccccCceeeEEeecCCC------CC--CceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHH
Confidence            369999999851            34555221      11  2345788874 663     499999999999996 446


Q ss_pred             HHHHHHHHHhCCCCCE-----EEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          222 KLIMENCYKAIPAGGK-----LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       222 ~~iL~~~~~aL~pgg~-----lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      -++|+++++.|+|+|.     |+|+-+..                       |..|.+..+.+.|.++++..||..++.+
T Consensus       124 G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~-----------------------Cv~NSRy~~~~~l~~im~~LGf~~~~~~  180 (219)
T PF11968_consen  124 GEMLRRAHKFLKPPGLSLFPSLFLVLPLP-----------------------CVTNSRYMTEERLREIMESLGFTRVKYK  180 (219)
T ss_pred             HHHHHHHHHHhCCCCccCcceEEEEeCch-----------------------HhhcccccCHHHHHHHHHhCCcEEEEEE
Confidence            6899999999999998     77664311                       1335566689999999999999998876


Q ss_pred             Ec
Q 043063          297 RV  298 (301)
Q Consensus       297 ~~  298 (301)
                      ..
T Consensus       181 ~~  182 (219)
T PF11968_consen  181 KS  182 (219)
T ss_pred             ec
Confidence            54

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=97.88  E-value=3.5e-05  Score=64.81  Aligned_cols=81  Identities=20%  Similarity=0.263  Sum_probs=58.0

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeC-------CCCccC--Ccc-cEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGG-------DMFKSI--PAA-DAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~g-------d~~~~~--p~~-D~v~~~~vlh~  215 (301)
                      +.+.++|||||+|             |..|. +.+++.+.+..+++....       ++....  ++. |+|++.+++|-
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HW  112 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHW  112 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHh
Confidence            4458999999997             56687 788998887655544221       211112  333 99999999998


Q ss_pred             CChHHHHHHHHHHHHhCCCCC-EEEEecc
Q 043063          216 WTDDECKLIMENCYKAIPAGG-KLIACEP  243 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg-~lli~e~  243 (301)
                      ++-+   ++.+.+++.|++.| .+.+.-.
T Consensus       113 Fdle---~fy~~~~rvLRk~Gg~iavW~Y  138 (261)
T KOG3010|consen  113 FDLE---RFYKEAYRVLRKDGGLIAVWNY  138 (261)
T ss_pred             hchH---HHHHHHHHHcCCCCCEEEEEEc
Confidence            8875   88999999999876 5555543

>PRK00811 spermidine synthase; Provisional

Probab=97.88  E-value=2e-05  Score=69.58  Aligned_cols=83  Identities=25%  Similarity=0.342  Sum_probs=59.9

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC---c-ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p---~-~D~v  207 (301)
                      .+..+||+||||.|               +++|+ |.+++.+++           .+|++++.+|....++   . .|+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            35689999999995               45677 777777653           3689999999876432   2 5999


Q ss_pred             eHhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEe
Q 043063          208 FMKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       208 ~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~  241 (301)
                      ++-..-+..+...  ...+++.+++.|+|||.+++.
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~  190 (283)
T PRK00811        155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ  190 (283)
T ss_pred             EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            8754333222221  357899999999999998875

>TIGR00536 hemK_fam HemK family putative methylases

Probab=97.87  E-value=3.2e-05  Score=68.46  Aligned_cols=79  Identities=23%  Similarity=0.346  Sum_probs=57.0

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHh------
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMK------  210 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~------  210 (301)
                      .+|||+|||+|               +.+|. +..++.+++       .++++|+.+|++++++.  .|+|++.      
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~  195 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE  195 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence            68999999996               45687 667766553       24699999999887654  5988874      


Q ss_pred             -------hhhccCCh----------HHHHHHHHHHHHhCCCCCEEEE
Q 043063          211 -------WVLTTWTD----------DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       211 -------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli  240 (301)
                             .++++-|.          +...++++++.+.|+|||.+++
T Consensus       196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence                   23332221          2356889999999999997754

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=4.4e-05  Score=63.43  Aligned_cols=86  Identities=22%  Similarity=0.336  Sum_probs=65.2

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-c--c
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-A--D  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~--D  205 (301)
                      ..++..++ .+...+||+||||+|             +-+|. +...+.|++      ..+|.++.||-..-+|. +  |
T Consensus        62 A~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD  140 (209)
T COG2518          62 ARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYD  140 (209)
T ss_pred             HHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcC
Confidence            34555564 888899999999996             33565 777777764      35799999999887776 3  9


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .|+.....-..|+    .    +.+.|+|||++++-.-
T Consensus       141 ~I~Vtaaa~~vP~----~----Ll~QL~~gGrlv~PvG  170 (209)
T COG2518         141 RIIVTAAAPEVPE----A----LLDQLKPGGRLVIPVG  170 (209)
T ss_pred             EEEEeeccCCCCH----H----HHHhcccCCEEEEEEc
Confidence            9999888766665    3    4446999999998776

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=97.85  E-value=0.0001  Score=67.79  Aligned_cols=80  Identities=21%  Similarity=0.334  Sum_probs=54.0

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc---ccEeeHhhhhc
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA---ADAIFMKWVLT  214 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~---~D~v~~~~vlh  214 (301)
                      ...++||+|||+|               +.+|. |.+++.+++     ..+++++.+|+++. .|.   .|+|+++--..
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI  330 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI  330 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence            4468999999996               46787 778877654     24799999999875 432   49998843211


Q ss_pred             c---------------------CCh--HHHHHHHHHHHHhCCCCCEEE
Q 043063          215 T---------------------WTD--DECKLIMENCYKAIPAGGKLI  239 (301)
Q Consensus       215 ~---------------------~~d--~~~~~iL~~~~~aL~pgg~ll  239 (301)
                      .                     ..|  +--.++++.+.+.|+|||.++
T Consensus       331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~li  378 (423)
T PRK14966        331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLL  378 (423)
T ss_pred             CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEE
Confidence            0                     000  113367777778888888765

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.85  E-value=3.3e-05  Score=64.72  Aligned_cols=94  Identities=23%  Similarity=0.433  Sum_probs=54.3

Q ss_pred             hhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCC---------------CCCceeEEeCCCCc
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAP---------------SIPGVTHIGGDMFK  199 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~---------------~~~ri~~~~gd~~~  199 (301)
                      +++.+. ..+...++|||||.|               +++++ |...+.|.               ...++++..|||.+
T Consensus        34 il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~  112 (205)
T PF08123_consen   34 ILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLD  112 (205)
T ss_dssp             HHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTT
T ss_pred             HHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccc
Confidence            444453 667789999999995               46665 44333221               14689999999987


Q ss_pred             c------CCcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063          200 S------IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD  248 (301)
Q Consensus       200 ~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~  248 (301)
                      .      +.++|+|++++..  |+++- ..-|++....|++|.+++......+..
T Consensus       113 ~~~~~~~~s~AdvVf~Nn~~--F~~~l-~~~L~~~~~~lk~G~~IIs~~~~~~~~  164 (205)
T PF08123_consen  113 PDFVKDIWSDADVVFVNNTC--FDPDL-NLALAELLLELKPGARIISTKPFCPRR  164 (205)
T ss_dssp             HHHHHHHGHC-SEEEE--TT--T-HHH-HHHHHHHHTTS-TT-EEEESS-SS-TT
T ss_pred             cHhHhhhhcCCCEEEEeccc--cCHHH-HHHHHHHHhcCCCCCEEEECCCcCCCC
Confidence            4      2347999999986  66654 455577778899999999888777654

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PRK03612 spermidine synthase; Provisional

Probab=97.85  E-value=5.5e-05  Score=72.52  Aligned_cols=84  Identities=20%  Similarity=0.250  Sum_probs=60.5

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCcc---CCc-cc
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKS---IPA-AD  205 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~---~p~-~D  205 (301)
                      ++..+|||||||+|               +.+|+ |++++.+++             .+|++++.+|.++.   .++ .|
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            35689999999996               45687 888887765             26899999998864   233 59


Q ss_pred             EeeHhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEec
Q 043063          206 AIFMKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       206 ~v~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +|++...-+..+..   ...++++++++.|+|||++++.-
T Consensus       376 vIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~  415 (521)
T PRK03612        376 VIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS  415 (521)
T ss_pred             EEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence            99886432211111   12368999999999999988764

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.83  E-value=3.6e-05  Score=61.99  Aligned_cols=107  Identities=17%  Similarity=0.194  Sum_probs=70.5

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCC------CC-CceeEEeCCCCcc--CCc-ccEeeHhhhhcc
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAP------SI-PGVTHIGGDMFKS--IPA-ADAIFMKWVLTT  215 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~------~~-~ri~~~~gd~~~~--~p~-~D~v~~~~vlh~  215 (301)
                      .+|||+|||.|               ++.|. +..++.|+      .. +.|+|+..|++++  .+. .|+|+=+.++-.
T Consensus        69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA  148 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA  148 (227)
T ss_pred             cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence            49999999996               34554 33333332      22 4599999999986  333 487776666543


Q ss_pred             C------ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          216 W------TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       216 ~------~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      +      ++......+..+.+.|+|||.++|.-+-                               .|..|+.+.++.-|
T Consensus       149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-------------------------------~T~dELv~~f~~~~  197 (227)
T KOG1271|consen  149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-------------------------------FTKDELVEEFENFN  197 (227)
T ss_pred             eecCCCCcccceeeehhhHhhccCCCcEEEEEecC-------------------------------ccHHHHHHHHhcCC
Confidence            2      2222234577888889999988876541                               16677777777777


Q ss_pred             CCceEEEEcc
Q 043063          290 FPHLRLYRVL  299 (301)
Q Consensus       290 f~~~~~~~~~  299 (301)
                      |.....+|.+
T Consensus       198 f~~~~tvp~p  207 (227)
T KOG1271|consen  198 FEYLSTVPTP  207 (227)
T ss_pred             eEEEEeeccc
Confidence            7777776654

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.82  E-value=0.00011  Score=70.28  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=56.1

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhh----
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKW----  211 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~----  211 (301)
                      ..+|||||||+|               +.+|. |.+++.+++       .++++++.+|+++.++.  .|+|++.-    
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~  218 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS  218 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence            468999999996               46787 677776653       25899999999876543  59888731    


Q ss_pred             ----------hhccCC------h----HHHHHHHHHHHHhCCCCCEEEE
Q 043063          212 ----------VLTTWT------D----DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       212 ----------vlh~~~------d----~~~~~iL~~~~~aL~pgg~lli  240 (301)
                                ++.+.|      .    +.-.++++.+.+.|+|||++++
T Consensus       219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence                      111111      1    1234678899999999998875

>PRK01581 speE spermidine synthase; Validated

Probab=97.82  E-value=2.7e-05  Score=70.19  Aligned_cols=83  Identities=16%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCccCC---c-cc
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIP---A-AD  205 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~~p---~-~D  205 (301)
                      .++.+||+||||.|               +++|+ |+|++.|++             .+|++++.+|..+.++   . .|
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            45689999999995               45687 788887663             3799999999986432   2 49


Q ss_pred             EeeHhhhhc---cCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          206 AIFMKWVLT---TWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       206 ~v~~~~vlh---~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      +|++-..-.   ..+.-....+++.+++.|+|||.+++.
T Consensus       229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q  267 (374)
T PRK01581        229 VIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ  267 (374)
T ss_pred             EEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            999763110   011122357899999999999998876

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.82  E-value=6.4e-05  Score=64.30  Aligned_cols=86  Identities=16%  Similarity=0.218  Sum_probs=62.5

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC---Cc--ccEeeH
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI---PA--ADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~---p~--~D~v~~  209 (301)
                      .+...+|||+|||+|               +++++ +.+.+.|++       .+||+++.+|+..-.   +.  .|+|++
T Consensus        42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~  121 (248)
T COG4123          42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC  121 (248)
T ss_pred             cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence            344789999999997               35676 556665553       489999999987542   22  489998


Q ss_pred             hhhhccCChH----------------HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          210 KWVLTTWTDD----------------ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       210 ~~vlh~~~d~----------------~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +=-.+.-++.                ....+++.+.+.|+|||++.++..
T Consensus       122 NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r  171 (248)
T COG4123         122 NPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHR  171 (248)
T ss_pred             CCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEec
Confidence            7655443332                245789999999999999988765

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.81  E-value=0.00013  Score=63.53  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=50.8

Q ss_pred             CceeEEeCCCCccC--Cc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          188 PGVTHIGGDMFKSI--PA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       188 ~ri~~~~gd~~~~~--p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      ..|.|..+|.+++.  +. .|+|+|++||=+++.+.-.+++++.+..|+|||.|++-....
T Consensus       184 ~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~sE~  244 (268)
T COG1352         184 KMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGHSET  244 (268)
T ss_pred             cccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEccCcc
Confidence            56899999999874  23 499999999999999989999999999999999999977643

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=97.76  E-value=1.4e-05  Score=67.31  Aligned_cols=87  Identities=23%  Similarity=0.419  Sum_probs=59.4

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-  203 (301)
                      ...++..++ ..+..+|||||+|+|                +.+|. |.+++.|++      ..+|+++.+|....+|. 
T Consensus        61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            345566665 788899999999995                24575 777777764      36899999998776654 


Q ss_pred             --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        .|.|++.......|.        .+.+.|++||+|++--.
T Consensus       140 apfD~I~v~~a~~~ip~--------~l~~qL~~gGrLV~pi~  173 (209)
T PF01135_consen  140 APFDRIIVTAAVPEIPE--------ALLEQLKPGGRLVAPIG  173 (209)
T ss_dssp             -SEEEEEESSBBSS--H--------HHHHTEEEEEEEEEEES
T ss_pred             CCcCEEEEeeccchHHH--------HHHHhcCCCcEEEEEEc
Confidence              399999887755553        24556899999988544

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.73  E-value=0.00013  Score=64.18  Aligned_cols=79  Identities=27%  Similarity=0.408  Sum_probs=52.9

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC---Ccee----EEeCCCCccCCc---ccEeeHhhhh
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI---PGVT----HIGGDMFKSIPA---ADAIFMKWVL  213 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~---~ri~----~~~gd~~~~~p~---~D~v~~~~vl  213 (301)
                      .++.+++|+|||+|              +++|+ |..++.++.+   +.|.    ....+.. ..+.   +|+|+++= |
T Consensus       161 ~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-~~~~~~~~DvIVANI-L  238 (300)
T COG2264         161 KKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-EVPENGPFDVIVANI-L  238 (300)
T ss_pred             cCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-hhcccCcccEEEehh-h
Confidence            46789999999996              46788 6666666542   3333    2222222 2332   59988754 3


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                         .+ -..++...+.+.++|||++++.--
T Consensus       239 ---A~-vl~~La~~~~~~lkpgg~lIlSGI  264 (300)
T COG2264         239 ---AE-VLVELAPDIKRLLKPGGRLILSGI  264 (300)
T ss_pred             ---HH-HHHHHHHHHHHHcCCCceEEEEee
Confidence               33 346899999999999999887653

>PLN02366 spermidine synthase

Probab=97.72  E-value=6.5e-05  Score=67.00  Aligned_cols=84  Identities=23%  Similarity=0.226  Sum_probs=58.7

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v  207 (301)
                      .+..+||+||||.|               +++|+ |.|++.+++          .+|++++.+|.+.-   .+.  .|+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            45789999999995               35677 667776654          36999999997643   332  5999


Q ss_pred             eHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEec
Q 043063          208 FMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       208 ~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ++-..-+..+..  -...+++.+++.|+|||.+++.-
T Consensus       170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q~  206 (308)
T PLN02366        170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCTQA  206 (308)
T ss_pred             EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence            874332221211  13578999999999999987643

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.68  E-value=0.00035  Score=59.45  Aligned_cols=110  Identities=17%  Similarity=0.164  Sum_probs=66.9

Q ss_pred             ccccCchHHHHHHHH----HhcCCccchHHhhhcCCCCCCcceEEeecCCce----------eeeehhHHHhhCCCCCce
Q 043063          125 YYGKMPEMNGLMRKA----MSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG----------INFDLPEVVAEAPSIPGV  190 (301)
Q Consensus       125 ~~~~~~~~~~~~~~~----m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g----------~~~Dlp~v~~~a~~~~ri  190 (301)
                      .+..+|...+.|.+.    ...|-......+++.+..-+....|-|+|||-+          .-|||-.+        +=
T Consensus       141 lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~~~~~kV~SfDL~a~--------~~  212 (325)
T KOG3045|consen  141 LFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIASSERHKVHSFDLVAV--------NE  212 (325)
T ss_pred             HHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhhccccceeeeeeecC--------CC
Confidence            344555555444443    334444344555554432235678999999995          22454222        22


Q ss_pred             eEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          191 THIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       191 ~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      .+++.|+..- ++.  .|++++...|- -.+  ...+++.+++.|+|||.++|.|.-.
T Consensus       213 ~V~~cDm~~vPl~d~svDvaV~CLSLM-gtn--~~df~kEa~RiLk~gG~l~IAEv~S  267 (325)
T KOG3045|consen  213 RVIACDMRNVPLEDESVDVAVFCLSLM-GTN--LADFIKEANRILKPGGLLYIAEVKS  267 (325)
T ss_pred             ceeeccccCCcCccCcccEEEeeHhhh-ccc--HHHHHHHHHHHhccCceEEEEehhh
Confidence            3445677652 443  48877766662 222  4689999999999999999998743

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=97.68  E-value=6.8e-05  Score=67.25  Aligned_cols=83  Identities=20%  Similarity=0.430  Sum_probs=57.6

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---c
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---A  204 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~  204 (301)
                      +++..+ .++..+|||||||+|                +.+|. |++++.+++      .+++.++.+|..+..+.   .
T Consensus        72 ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~f  150 (322)
T PRK13943         72 FMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPY  150 (322)
T ss_pred             HHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCc
Confidence            444443 566789999999995                34576 677666543      36799999998765332   5


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      |+|++...+++.+        ..+.+.|+|||++++..
T Consensus       151 D~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~  180 (322)
T PRK13943        151 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI  180 (322)
T ss_pred             cEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence            9999876554433        34567899999988754

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.63  E-value=8.3e-05  Score=65.35  Aligned_cols=89  Identities=22%  Similarity=0.310  Sum_probs=58.9

Q ss_pred             HhhhcCCCCCCcceEEeecCCcee------------e--eehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccE
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAGI------------N--FDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADA  206 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g~------------~--~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~  206 (301)
                      +++.+-.+|++ +.|||||||+||            +  ++-.++.+.|++       .+||++++|-+.+. +|+ +|+
T Consensus       168 Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~Dv  246 (517)
T KOG1500|consen  168 AILENHSDFQD-KIVLDVGAGSGILSFFAAQAGAKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDV  246 (517)
T ss_pred             HHHhcccccCC-cEEEEecCCccHHHHHHHHhCcceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhccE
Confidence            34433323654 689999999974            2  355667666654       48999999998765 887 698


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEE
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI  239 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~ll  239 (301)
                      ++.--+=..+-++...+---.+++.|+|.|+.+
T Consensus       247 iISEPMG~mL~NERMLEsYl~Ark~l~P~GkMf  279 (517)
T KOG1500|consen  247 IISEPMGYMLVNERMLESYLHARKWLKPNGKMF  279 (517)
T ss_pred             EEeccchhhhhhHHHHHHHHHHHhhcCCCCccc
Confidence            876544443334322333334678999999765

>TIGR00417 speE spermidine synthase

Probab=97.59  E-value=0.0001  Score=64.71  Aligned_cols=83  Identities=23%  Similarity=0.238  Sum_probs=58.2

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~  208 (301)
                      +++.+||+||||+|               +++|+ +.+++.+++          .+|++++.+|.++.+   +. .|+|+
T Consensus        71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi  150 (270)
T TIGR00417        71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII  150 (270)
T ss_pred             CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence            34569999999995               34566 666665543          368999999887532   33 59998


Q ss_pred             HhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEe
Q 043063          209 MKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       209 ~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~  241 (301)
                      +...-+.-+...  ...+++.+++.|+|||.+++.
T Consensus       151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~  185 (270)
T TIGR00417       151 VDSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ  185 (270)
T ss_pred             EeCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence            865432222222  458899999999999998886

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=97.55  E-value=0.00027  Score=61.35  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=55.6

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCCC---CceeEEeCCCCccCC-----cccEeeHhhhh---
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPSI---PGVTHIGGDMFKSIP-----AADAIFMKWVL---  213 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~---~ri~~~~gd~~~~~p-----~~D~v~~~~vl---  213 (301)
                      ..++||+|||+|               +.+|. |.+++.++++   .+++++.+|+++.++     ..|+|++.--.   
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~  166 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT  166 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence            458999999996               45687 7777776642   346899999886543     24988865311   


Q ss_pred             ---ccCChH------------------HHHHHHHHHHHhCCCCCEEEEe
Q 043063          214 ---TTWTDD------------------ECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       214 ---h~~~d~------------------~~~~iL~~~~~aL~pgg~lli~  241 (301)
                         +..+++                  -..++++.+.+.|+|||++++.
T Consensus       167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~  215 (251)
T TIGR03704       167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVE  215 (251)
T ss_pred             hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence               111111                  1347888889999999998865

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=97.54  E-value=0.00034  Score=65.90  Aligned_cols=89  Identities=21%  Similarity=0.299  Sum_probs=61.7

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHh--
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMK--  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~--  210 (301)
                      .....+|||+|||+|                +.+|. +..++.+++      .++|+++.+|+.+..+.  .|+|++-  
T Consensus       248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P  327 (445)
T PRK14904        248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP  327 (445)
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence            445679999999996                35687 667666543      25789999998764332  5988851  


Q ss_pred             ----hhh-------ccCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063          211 ----WVL-------TTWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       211 ----~vl-------h~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                          .++       ..+++++.       .++|+++.+.|+|||+|+...+...
T Consensus       328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~  381 (445)
T PRK14904        328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE  381 (445)
T ss_pred             CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                111       12333322       3699999999999999999887664

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.0003  Score=59.95  Aligned_cols=91  Identities=20%  Similarity=0.336  Sum_probs=70.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~  203 (301)
                      ..++...+ .++..+|+|.|.|+|                +.||. ++-.+.|++       .++|++..+|+.+. .+.
T Consensus        84 ~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~  162 (256)
T COG2519          84 GYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEE  162 (256)
T ss_pred             HHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccccc
Confidence            34455553 888999999999995                45665 666666654       36799999999876 444


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                       .|++++     +++|+.  ..|.+++++|+|||++.+.-++.++
T Consensus       163 ~vDav~L-----Dmp~PW--~~le~~~~~Lkpgg~~~~y~P~veQ  200 (256)
T COG2519         163 DVDAVFL-----DLPDPW--NVLEHVSDALKPGGVVVVYSPTVEQ  200 (256)
T ss_pred             ccCEEEE-----cCCChH--HHHHHHHHHhCCCcEEEEEcCCHHH
Confidence             587654     778875  9999999999999999998887753

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=97.45  E-value=0.00024  Score=60.99  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=58.8

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---------cc
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---------AA  204 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---------~~  204 (301)
                      ..+..+|||||||+|                +.+|. |+.++.|++       .++|+++.||..+.++         ..
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f  145 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF  145 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence            345789999999985                35676 666665543       3789999999976321         24


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      |+|++-     -+.+.-..++..+.+.|+|||.+++-+...
T Consensus       146 D~VfiD-----a~k~~y~~~~~~~~~ll~~GG~ii~dn~l~  181 (234)
T PLN02781        146 DFAFVD-----ADKPNYVHFHEQLLKLVKVGGIIAFDNTLW  181 (234)
T ss_pred             CEEEEC-----CCHHHHHHHHHHHHHhcCCCeEEEEEcCCc
Confidence            988773     233445688999999999999877655444

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.41  E-value=0.00046  Score=61.75  Aligned_cols=94  Identities=11%  Similarity=0.210  Sum_probs=64.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------------eeeehh-HHHhhC----C--CCCceeE--EeCCCCcc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------------INFDLP-EVVAEA----P--SIPGVTH--IGGDMFKS  200 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------------~~~Dlp-~v~~~a----~--~~~ri~~--~~gd~~~~  200 (301)
                      +++++.++   ...+++|+|||++                   +-+|+. +.++.+    .  ..+.+++  +.|||.+.
T Consensus        68 ~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        68 SDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             HHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            44555443   4568999999994                   245763 333332    2  2355655  78898764


Q ss_pred             ---CCc------c-cEeeHhhhhccCChHHHHHHHHHHHH-hCCCCCEEEE-ecccc
Q 043063          201 ---IPA------A-DAIFMKWVLTTWTDDECKLIMENCYK-AIPAGGKLIA-CEPVL  245 (301)
Q Consensus       201 ---~p~------~-D~v~~~~vlh~~~d~~~~~iL~~~~~-aL~pgg~lli-~e~~~  245 (301)
                         +|.      . -++++...+.+++++++..+|+++++ .|+||+.++| .|.+.
T Consensus       145 l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~D~~k  201 (319)
T TIGR03439       145 LAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGLDGCK  201 (319)
T ss_pred             HhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEecCCCC
Confidence               221      2 56777789999999999999999999 9999987766 45443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=97.32  E-value=0.00023  Score=66.78  Aligned_cols=111  Identities=23%  Similarity=0.312  Sum_probs=67.4

Q ss_pred             CchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCC---CCcceEEeecCCceeee-------------------eh-
Q 043063          121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGF---KGVKRLVDVGGSAGINF-------------------DL-  177 (301)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~---~~~~~vlDvGgG~g~~~-------------------Dl-  177 (301)
                      ..|+.+++++...+.|.+|+..       ++.+.....   .....|+|||||+|++.                   +- 
T Consensus       151 ~tYe~fE~D~vKY~~Ye~AI~~-------al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn  223 (448)
T PF05185_consen  151 QTYEVFEKDPVKYDQYERAIEE-------ALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKN  223 (448)
T ss_dssp             HHHHHHCC-HHHHHHHHHHHHH-------HHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESS
T ss_pred             ccHhhHhcCHHHHHHHHHHHHH-------HHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCC
Confidence            4578888999888999998742       222222111   12568999999997433                   21 


Q ss_pred             hHHHhh------CCC-CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCCh-HHHHHHHHHHHHhCCCCCEEE
Q 043063          178 PEVVAE------APS-IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD-DECKLIMENCYKAIPAGGKLI  239 (301)
Q Consensus       178 p~v~~~------a~~-~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~ll  239 (301)
                      |..+..      ... .++|+++.+|+.+- .|. +|+++.-.. ..+.+ +-....|....+.|+|||.++
T Consensus       224 ~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElL-Gsfg~nEl~pE~Lda~~rfLkp~Gi~I  294 (448)
T PF05185_consen  224 PNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELL-GSFGDNELSPECLDAADRFLKPDGIMI  294 (448)
T ss_dssp             THHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE----BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred             HhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEecc-CCccccccCHHHHHHHHhhcCCCCEEe
Confidence            211110      111 38999999999876 675 798875444 44444 446677888889999998665

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=97.30  E-value=0.00038  Score=56.63  Aligned_cols=89  Identities=13%  Similarity=0.223  Sum_probs=55.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEe
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAI  207 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v  207 (301)
                      ..+++.++ +.+..++||||||+|             +.+|. +.+++.+++    .++++++.+|+.+. .+.  .|.|
T Consensus         3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d~v   81 (169)
T smart00650        3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPYKV   81 (169)
T ss_pred             HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCCEE
Confidence            34556664 667789999999996             46777 556655543    36899999999875 444  3776


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHh--CCCCCEEEEecc
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKA--IPAGGKLIACEP  243 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~a--L~pgg~lli~e~  243 (301)
                      +. +..++.+.    .++.++.+.  +.++|.+++...
T Consensus        82 i~-n~Py~~~~----~~i~~~l~~~~~~~~~~l~~q~e  114 (169)
T smart00650       82 VG-NLPYNIST----PILFKLLEEPPAFRDAVLMVQKE  114 (169)
T ss_pred             EE-CCCcccHH----HHHHHHHhcCCCcceEEEEEEHH
Confidence            55 44444444    344444433  235566655554

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.30  E-value=0.00083  Score=62.95  Aligned_cols=95  Identities=14%  Similarity=0.183  Sum_probs=63.4

Q ss_pred             hhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-C--Cc--
Q 043063          152 LDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I--PA--  203 (301)
Q Consensus       152 ~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~--p~--  203 (301)
                      +..++ ..+..+|||+|||+|               +.+|. +..++.+++       ..++.++.+|.... .  +.  
T Consensus       231 ~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~  309 (426)
T TIGR00563       231 ATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQ  309 (426)
T ss_pred             HHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccc
Confidence            33443 556689999999996               34676 666655543       12345577776643 1  22  


Q ss_pred             ccEeeH------hhhhccCCh-------HH-------HHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          204 ADAIFM------KWVLTTWTD-------DE-------CKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       204 ~D~v~~------~~vlh~~~d-------~~-------~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      .|.|++      ..+++..|+       ++       ..++|+++.+.|+|||+|+...+....
T Consensus       310 fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~~  373 (426)
T TIGR00563       310 FDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVLP  373 (426)
T ss_pred             cCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCCh
Confidence            498885      345665554       11       358999999999999999999887753

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=97.26  E-value=0.00037  Score=57.94  Aligned_cols=82  Identities=17%  Similarity=0.243  Sum_probs=53.8

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCCC-CceeEEeCCCCccCC--c--ccEeeHhhhhc-------
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-PGVTHIGGDMFKSIP--A--ADAIFMKWVLT-------  214 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~~p--~--~D~v~~~~vlh-------  214 (301)
                      ..-|||||||+|             +++|. |.+++.|.+. -.-.++.+||=+.+|  .  .|.++....+.       
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg~ISISAvQWLcnA~~  130 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDGVISISAVQWLCNADK  130 (270)
T ss_pred             CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccceEEEeeeeeeecccCc
Confidence            678999999996             57898 9999988751 113466677765443  2  26555443331       


Q ss_pred             --cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          215 --TWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       215 --~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                        +.|..-...++..++..|++|++-++.=
T Consensus       131 s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf  160 (270)
T KOG1541|consen  131 SLHVPKKRLLRFFGTLYSCLKRGARAVLQF  160 (270)
T ss_pred             cccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence              1123334566888999999998877653

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.25  E-value=0.00072  Score=63.49  Aligned_cols=89  Identities=16%  Similarity=0.241  Sum_probs=62.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---C---c-ccEe
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---P---A-ADAI  207 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p---~-~D~v  207 (301)
                      ..+..+|||+|||+|                +.+|. +..++.+++      ..+|+++.+|.....   +   . .|.|
T Consensus       250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  329 (434)
T PRK14901        250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI  329 (434)
T ss_pred             CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence            455689999999995                34576 666665543      256899999986531   1   2 4998


Q ss_pred             eHh------hhhccCCh-------HH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          208 FMK------WVLTTWTD-------DE-------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       208 ~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      ++-      .+++..++       ++       -.++|+++.+.|+|||+|+...+...
T Consensus       330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~  388 (434)
T PRK14901        330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLH  388 (434)
T ss_pred             EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            862      34444443       22       35889999999999999998886654

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=97.24  E-value=0.001  Score=62.68  Aligned_cols=93  Identities=18%  Similarity=0.255  Sum_probs=61.6

Q ss_pred             hcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-cc
Q 043063          153 DGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-AD  205 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D  205 (301)
                      ..++ ..+..+|||+|||+|                +.+|+ +..++.+++      ..+|+++.+|+.+.   ++. .|
T Consensus       244 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD  322 (444)
T PRK14902        244 PALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD  322 (444)
T ss_pred             HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCC
Confidence            3443 556689999999995                45687 666665543      24599999998753   333 59


Q ss_pred             EeeHhh------hhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          206 AIFMKW------VLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       206 ~v~~~~------vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +|++--      ++.       .++..+       ...+|+.+.+.|+|||+|+...+...
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  383 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIE  383 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCC
Confidence            888631      111       112222       24689999999999999987665543

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.23  E-value=0.001  Score=62.30  Aligned_cols=93  Identities=16%  Similarity=0.212  Sum_probs=61.7

Q ss_pred             hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCcc---CC-c-ccE
Q 043063          153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKS---IP-A-ADA  206 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~---~p-~-~D~  206 (301)
                      ..++ .....+|||+|||+|               +.+|. +..++.+++.     -+++++.+|..+.   .+ . .|.
T Consensus       238 ~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~  316 (427)
T PRK10901        238 TLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDR  316 (427)
T ss_pred             HHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCE
Confidence            3443 456689999999996               35687 6666665431     2478999998753   22 2 498


Q ss_pred             ee----Hhh--hhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IF----MKW--VLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~----~~~--vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |+    |+.  ++.       ....++       ..++|+++.+.|+|||+++...+...
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~  376 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSIL  376 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence            88    332  111       112221       24799999999999999998886554

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.22  E-value=0.00031  Score=62.17  Aligned_cols=78  Identities=21%  Similarity=0.236  Sum_probs=51.2

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC--cccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP--AADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|              +.+|. |..++.+++       .+++.+..   ..+.+  .+|+|+++-.   
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~---~~~~~~~~~dlvvANI~---  234 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSL---SEDLVEGKFDLVVANIL---  234 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESC---TSCTCCS-EEEEEEES----
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEE---ecccccccCCEEEECCC---
Confidence            4579999999996              36787 666666553       25665531   22333  3599885433   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                        .+....++..+.+.|+|||++++.-...
T Consensus       235 --~~vL~~l~~~~~~~l~~~G~lIlSGIl~  262 (295)
T PF06325_consen  235 --ADVLLELAPDIASLLKPGGYLILSGILE  262 (295)
T ss_dssp             --HHHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred             --HHHHHHHHHHHHHhhCCCCEEEEccccH
Confidence              3345678888999999999998865543

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.20  E-value=0.0014  Score=56.79  Aligned_cols=85  Identities=20%  Similarity=0.206  Sum_probs=61.4

Q ss_pred             CcceEEeecCCce-----------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChH-HHHH
Q 043063          160 GVKRLVDVGGSAG-----------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDD-ECKL  223 (301)
Q Consensus       160 ~~~~vlDvGgG~g-----------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~-~~~~  223 (301)
                      ....++|+|||.|           ++.|+ -..+..+++.+.......|+... .+.  .|..+-..++|+|+-. ...+
T Consensus        45 ~gsv~~d~gCGngky~~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~RR~~  124 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRERRER  124 (293)
T ss_pred             CcceeeecccCCcccCcCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHHHHHH
Confidence            3678999999996           45566 34444444444435666777764 443  5999999999998754 4568


Q ss_pred             HHHHHHHhCCCCCEEEEeccc
Q 043063          224 IMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       224 iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +|+++.+.++|||..+|.-.-
T Consensus       125 ~l~e~~r~lrpgg~~lvyvwa  145 (293)
T KOG1331|consen  125 ALEELLRVLRPGGNALVYVWA  145 (293)
T ss_pred             HHHHHHHHhcCCCceEEEEeh
Confidence            999999999999987766543

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=97.11  E-value=0.0018  Score=56.60  Aligned_cols=89  Identities=19%  Similarity=0.346  Sum_probs=58.7

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCcccEeeHh-
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPAADAIFMK-  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~~D~v~~~-  210 (301)
                      ..+..+|||+|||+|                +.+|. +..++.+++      ..+|++..+|....   .+..|+|++- 
T Consensus        69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~  148 (264)
T TIGR00446        69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA  148 (264)
T ss_pred             CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence            445679999999995                34676 666655443      25688988886542   2235888751 


Q ss_pred             -----hhhc-------cCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063          211 -----WVLT-------TWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       211 -----~vlh-------~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                           .++.       .|+++..       .++|+++.+.|+|||+|+...+...
T Consensus       149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~  203 (264)
T TIGR00446       149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE  203 (264)
T ss_pred             CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence                 1111       2333322       4699999999999999987776554

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=97.09  E-value=0.0044  Score=50.65  Aligned_cols=94  Identities=15%  Similarity=0.103  Sum_probs=59.3

Q ss_pred             CceeEEeCCCCcc-CCc-ccEeeHhhhhccC-----ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh
Q 043063          188 PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTW-----TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE  260 (301)
Q Consensus       188 ~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~-----~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~  260 (301)
                      .+++.+..+...- .|+ .|+++....-|++     ....+.++-+.++++|||||.++|.|.......  +..      
T Consensus       105 aN~e~~~~~~~A~~~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~--~~~------  176 (238)
T COG4798         105 ANVEVIGKPLVALGAPQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGS--GLS------  176 (238)
T ss_pred             hhhhhhCCcccccCCCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCC--Chh------
Confidence            4455544444332 344 3777765555543     345678999999999999999999998876542  111      


Q ss_pred             ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                       |-..       -.-++..-..+..+.+||+..-...
T Consensus       177 -dt~~-------~~ri~~a~V~a~veaaGFkl~aeS~  205 (238)
T COG4798         177 -DTIT-------LHRIDPAVVIAEVEAAGFKLEAESE  205 (238)
T ss_pred             -hhhh-------hcccChHHHHHHHHhhcceeeeeeh
Confidence             1000       1123677778888999998765443

>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases

Probab=97.08  E-value=0.00043  Score=47.24  Aligned_cols=60  Identities=17%  Similarity=0.163  Sum_probs=48.2

Q ss_pred             ccccccccccccCC-CC--CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            4 NECRDGGKKGRLAN-TP--LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         4 ~~a~~lglf~~L~~-g~--~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      ....+-.|++.|.. |+  .|+.+||+++|+    +...++++|..|...|+|+....  .++.|+++.
T Consensus         4 ~~~~~~~IL~~L~~~g~~~~ta~eLa~~lgl----~~~~v~r~L~~L~~~G~V~~~~~--~~~~W~i~~   66 (68)
T smart00550        4 QDSLEEKILEFLENSGDETSTALQLAKNLGL----PKKEVNRVLYSLEKKGKVCKQGG--TPPLWKLTD   66 (68)
T ss_pred             chHHHHHHHHHHHHCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCC--CCCceEeec
Confidence            34455677888875 56  999999999999    78899999999999999998631  236788765

Helix-turn-helix-containing domain. Also known as Zab.

>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities

Probab=97.07  E-value=0.00022  Score=45.89  Aligned_cols=44  Identities=23%  Similarity=0.246  Sum_probs=37.7

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      +.|++.|.+  ++.|+.|||+++|+    +..-+.|+|..|+..|+++++
T Consensus         6 l~iL~~l~~~~~~~t~~eia~~~gl----~~stv~r~L~tL~~~g~v~~d   51 (52)
T PF09339_consen    6 LRILEALAESGGPLTLSEIARALGL----PKSTVHRLLQTLVEEGYVERD   51 (52)
T ss_dssp             HHHHHCHHCTBSCEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEC
T ss_pred             HHHHHHHHcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCcCeecC
Confidence            346777764  56799999999999    789999999999999999986

One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.05  E-value=0.0018  Score=60.76  Aligned_cols=89  Identities=15%  Similarity=0.213  Sum_probs=60.0

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeH-
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFM-  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~-  209 (301)
                      ..+..+|||+|||+|                +.+|+ +..++.+++      ..+|++..+|....   .+. .|.|++ 
T Consensus       235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence            556789999999996                35687 666665543      24688999997642   122 488875 


Q ss_pred             -----hhhhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          210 -----KWVLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 -----~~vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                           ..++.       .++.++       -.++|.++.+.|+|||.|+...+...
T Consensus       315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  370 (431)
T PRK14903        315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT  370 (431)
T ss_pred             CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence                 12222       222221       25789999999999999887777654

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.05  E-value=0.00035  Score=60.36  Aligned_cols=90  Identities=18%  Similarity=0.148  Sum_probs=59.5

Q ss_pred             EEeCCCCcc--------CCc-ccEeeHhhhhccCC--hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh
Q 043063          192 HIGGDMFKS--------IPA-ADAIFMKWVLTTWT--DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE  260 (301)
Q Consensus       192 ~~~gd~~~~--------~p~-~D~v~~~~vlh~~~--d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~  260 (301)
                      ++..|+..+        +|. +|+++...+|....  .++-.+.++++.+.|+|||.|++....-...    +      .
T Consensus       138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~----Y------~  207 (256)
T PF01234_consen  138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTY----Y------M  207 (256)
T ss_dssp             EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SE----E------E
T ss_pred             EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCcee----E------E
Confidence            666788764        233 79999999998643  3567899999999999999999988743211    0      0


Q ss_pred             ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      ..-     ..+..-..+++.+++.|+++||.+.+..
T Consensus       208 vG~-----~~F~~l~l~ee~v~~al~~aG~~i~~~~  238 (256)
T PF01234_consen  208 VGG-----HKFPCLPLNEEFVREALEEAGFDIEDLE  238 (256)
T ss_dssp             ETT-----EEEE---B-HHHHHHHHHHTTEEEEEEE
T ss_pred             ECC-----EecccccCCHHHHHHHHHHcCCEEEecc
Confidence            000     0112233589999999999999888776

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.94  E-value=0.0016  Score=57.24  Aligned_cols=96  Identities=18%  Similarity=0.341  Sum_probs=60.3

Q ss_pred             HHhhhcCCCCCCcceEEeecCCcee----------------eeeh-hHHHhhCCC----CC--ceeEEeCCCCc---cCC
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAGI----------------NFDL-PEVVAEAPS----IP--GVTHIGGDMFK---SIP  202 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g~----------------~~Dl-p~v~~~a~~----~~--ri~~~~gd~~~---~~p  202 (301)
                      .++.+..++| .+.+|||+|+|.|+                .+|. +.+.+.++.    ..  +......++..   +++
T Consensus        23 ~El~~r~p~f-~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~  101 (274)
T PF09243_consen   23 SELRKRLPDF-RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP  101 (274)
T ss_pred             HHHHHhCcCC-CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence            3444444434 35789999999963                4454 445444332    11  11101112221   233


Q ss_pred             cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      ..|+|+++++|-.++++....+++++-+.+.+  .|+|+|+-.+.
T Consensus       102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~  144 (274)
T PF09243_consen  102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPGTPA  144 (274)
T ss_pred             CCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCCChH
Confidence            45999999999999998788889988777665  89999985553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.86  E-value=0.0011  Score=54.75  Aligned_cols=77  Identities=21%  Similarity=0.295  Sum_probs=56.8

Q ss_pred             CCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC----------------CCceeEEeCCCCccCCc
Q 043063          158 FKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS----------------IPGVTHIGGDMFKSIPA  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~----------------~~ri~~~~gd~~~~~p~  203 (301)
                      +.+..++||||+|+|                 +++|. |++++.+.+                ..++.++.||-..-.+.
T Consensus        80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e  159 (237)
T KOG1661|consen   80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE  159 (237)
T ss_pred             hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence            556789999999994                 35676 777766542                36889999998876443


Q ss_pred             ---ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          204 ---ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       204 ---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                         .|.|.+..        .+.++.+++-.-|+|||+++|--
T Consensus       160 ~a~YDaIhvGA--------aa~~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  160 QAPYDAIHVGA--------AASELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cCCcceEEEcc--------CccccHHHHHHhhccCCeEEEee
Confidence               49887763        23467777888899999998753

>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities

Probab=96.84  E-value=0.0005  Score=43.21  Aligned_cols=44  Identities=16%  Similarity=0.193  Sum_probs=39.2

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE   55 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~   55 (301)
                      ++.|...|.+||.++.||++.+|+    ++..+.+-|+.|...|+++.
T Consensus         4 R~~Il~~L~~~~~~~~el~~~l~~----s~~~vs~hL~~L~~~glV~~   47 (47)
T PF01022_consen    4 RLRILKLLSEGPLTVSELAEELGL----SQSTVSHHLKKLREAGLVEK   47 (47)
T ss_dssp             HHHHHHHHTTSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEE
T ss_pred             HHHHHHHHHhCCCchhhHHHhccc----cchHHHHHHHHHHHCcCeeC
Confidence            466788898999999999999999    78999999999999999863

One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=96.81  E-value=0.0055  Score=48.94  Aligned_cols=96  Identities=22%  Similarity=0.348  Sum_probs=72.4

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCcee----------------eeeh-hHHHhh-CCCCCceeEEeCCCCcc------CCc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAGI----------------NFDL-PEVVAE-APSIPGVTHIGGDMFKS------IPA  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g~----------------~~Dl-p~v~~~-a~~~~ri~~~~gd~~~~------~p~  203 (301)
                      ++.+++..+ +....-|+++|.|+|+                .++. |+-... -+..+.++++.||.+..      .+.
T Consensus        37 A~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~e~~g  115 (194)
T COG3963          37 ARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLGEHKG  115 (194)
T ss_pred             HHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHhhcCC
Confidence            455556665 8888899999999973                2332 333332 23357888999999864      222


Q ss_pred             --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                        .|.|++.--+-++|-....++|+++..-|++||.++-...-
T Consensus       116 q~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYg  158 (194)
T COG3963         116 QFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYG  158 (194)
T ss_pred             CeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence              49999999999999999999999999999999988877654

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.80  E-value=0.0014  Score=58.17  Aligned_cols=92  Identities=25%  Similarity=0.408  Sum_probs=57.0

Q ss_pred             cCCCCCCcceEEeecCCceeee--------ehhH-HHhhCCC--------------CCceeEEeCCCCcc---CCcccEe
Q 043063          154 GYDGFKGVKRLVDVGGSAGINF--------DLPE-VVAEAPS--------------IPGVTHIGGDMFKS---IPAADAI  207 (301)
Q Consensus       154 ~~~~~~~~~~vlDvGgG~g~~~--------Dlp~-v~~~a~~--------------~~ri~~~~gd~~~~---~p~~D~v  207 (301)
                      ..++|+. .+|||||.|.|+++        |+.+ ++-.+..              ..+-..-..|+..+   +|.+|.|
T Consensus       108 ~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~y  186 (484)
T COG5459         108 RVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLY  186 (484)
T ss_pred             hCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcccee
Confidence            3344544 56999999998643        3311 1111110              12333344555443   5667888


Q ss_pred             eHhhhhccCCh----HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          208 FMKWVLTTWTD----DECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       208 ~~~~vlh~~~d----~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .+..++|.+-.    .+....++++-..+.|||.|+|+|.-.+
T Consensus       187 tl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGtp  229 (484)
T COG5459         187 TLAIVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGTP  229 (484)
T ss_pred             ehhhhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCCc
Confidence            88777776433    3344489999999999999999998544

>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation

Probab=96.80  E-value=0.0011  Score=47.87  Aligned_cols=56  Identities=18%  Similarity=0.204  Sum_probs=47.0

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..  ++.|+.+||+.+|+    +...+.+.|+.|+..|++.+.+   .++.|++++..
T Consensus         8 ~~Il~~l~~~~~~~t~~~ia~~l~i----~~~tv~r~l~~L~~~g~l~~~~---~~~~y~l~~~~   65 (91)
T smart00346        8 LAVLRALAEEPGGLTLAELAERLGL----SKSTAHRLLNTLQELGYVEQDG---QNGRYRLGPKV   65 (91)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeeecC---CCCceeecHHH
Confidence            456777764  68999999999999    7899999999999999999863   35679998754

>COG1414 IclR Transcriptional regulator [Transcription]

Probab=96.74  E-value=0.0011  Score=57.36  Aligned_cols=56  Identities=21%  Similarity=0.280  Sum_probs=47.1

Q ss_pred             cccccccCCCC--CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLANTP--LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~g~--~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..+|  +++.|||+++|+    ++.-+.|+|..|+..|++++++   .+++|++++..
T Consensus         7 l~iL~~l~~~~~~l~l~ela~~~gl----pksT~~RlL~tL~~~G~v~~d~---~~g~Y~Lg~~~   64 (246)
T COG1414           7 LAILDLLAEGPGGLSLAELAERLGL----PKSTVHRLLQTLVELGYVEQDP---EDGRYRLGPRL   64 (246)
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEeehHHH
Confidence            45677777544  459999999999    7899999999999999999994   35689999865

>TIGR00755 ksgA dimethyladenosine transferase

Probab=96.67  E-value=0.0039  Score=54.16  Aligned_cols=77  Identities=12%  Similarity=0.209  Sum_probs=48.7

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCccc--Ee
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPAAD--AI  207 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~~D--~v  207 (301)
                      ..+++..+ ..+..+|||||||+|             +.+|. +.+++.+++    .++++++.+|+.+. ++..|  .+
T Consensus        19 ~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~~~~   97 (253)
T TIGR00755        19 QKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPKQLK   97 (253)
T ss_pred             HHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCCcce
Confidence            34455553 666789999999996             45676 556555442    47899999999875 44434  34


Q ss_pred             eHhhhhccCChHHHHHHHHHHHH
Q 043063          208 FMKWVLTTWTDDECKLIMENCYK  230 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~  230 (301)
                      ++++.-++++.    .++.++..
T Consensus        98 vvsNlPy~i~~----~il~~ll~  116 (253)
T TIGR00755        98 VVSNLPYNISS----PLIFKLLE  116 (253)
T ss_pred             EEEcCChhhHH----HHHHHHhc
Confidence            44454444444    55555554

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=96.66  E-value=0.012  Score=52.33  Aligned_cols=133  Identities=13%  Similarity=0.105  Sum_probs=86.5

Q ss_pred             CcceEEeecCCc-----------e-eee--ehhHHHhhCCC---------CCceeEEeCCCCcc-CCc-----c------
Q 043063          160 GVKRLVDVGGSA-----------G-INF--DLPEVVAEAPS---------IPGVTHIGGDMFKS-IPA-----A------  204 (301)
Q Consensus       160 ~~~~vlDvGgG~-----------g-~~~--Dlp~v~~~a~~---------~~ri~~~~gd~~~~-~p~-----~------  204 (301)
                      +...||-+|||-           + .+|  |+|+|++-=++         ..++++++.|++++ +|.     +      
T Consensus        92 g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~p  171 (297)
T COG3315          92 GIRQVVILGAGLDTRAYRLDWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRP  171 (297)
T ss_pred             cccEEEEeccccccceeecCCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCC
Confidence            468999999998           2 344  77999875221         24899999999954 442     1      


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC-Ch-HHh-hhhhhccHHHHhhhhccccccCHHHH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN-ES-QRT-RALLEGDIFVMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~-~~-~~~-~~~~~~d~~m~~~~~~~g~~rt~~e~  281 (301)
                      -++++-.+|-+++.+.+.++|+++.....||+.++........... .. +.. ......++...   ...-......++
T Consensus       172 t~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---e~~~~~~~~~e~  248 (297)
T COG3315         172 TLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLRRPAARKTMRGEDLDRG---ELVYFGDDPAEI  248 (297)
T ss_pred             eEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhcccchhhhhhccccccccc---cceeccCCHHHH
Confidence            4889999999999999999999999999999887766541111100 00 000 00000000000   000112368999


Q ss_pred             HHHHHhCCCCceEE
Q 043063          282 KQLGFSAGFPHLRL  295 (301)
Q Consensus       282 ~~~l~~aGf~~~~~  295 (301)
                      ..++.+.||.....
T Consensus       249 ~~~l~~~g~~~~~~  262 (297)
T COG3315         249 ETWLAERGWRSTLN  262 (297)
T ss_pred             HHHHHhcCEEEEec
Confidence            99999999987765

>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A

Probab=96.63  E-value=0.0012  Score=46.23  Aligned_cols=57  Identities=23%  Similarity=0.348  Sum_probs=44.4

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .|+..|..++.+..+|+..+++    +...+.+.|+.|...|++...     ++.|.+|+.+..+.
T Consensus        10 ~IL~~l~~~~~~~t~i~~~~~L----~~~~~~~yL~~L~~~gLI~~~-----~~~Y~lTekG~~~l   66 (77)
T PF14947_consen   10 DILKILSKGGAKKTEIMYKANL----NYSTLKKYLKELEEKGLIKKK-----DGKYRLTEKGKEFL   66 (77)
T ss_dssp             HHHHHH-TT-B-HHHHHTTST------HHHHHHHHHHHHHTTSEEEE-----TTEEEE-HHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCcCeeCC-----CCEEEECccHHHHH
Confidence            4556665789999999999999    899999999999999999775     78999999997654

>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional

Probab=96.61  E-value=0.0019  Score=56.30  Aligned_cols=57  Identities=19%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      +.|++.|.. ++.|+.|||+++|+    ++.-+.|+|+.|+..|++.++.   ..++|++++..-
T Consensus        17 l~IL~~l~~~~~l~l~eia~~lgl----~kstv~Rll~tL~~~G~l~~~~---~~~~Y~lG~~~~   74 (257)
T PRK15090         17 FGILQALGEEREIGITELSQRVMM----SKSTVYRFLQTMKTLGYVAQEG---ESEKYSLTLKLF   74 (257)
T ss_pred             HHHHHHhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEEecHHHH
Confidence            346666664 67999999999999    7889999999999999999873   357899998653

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=96.60  E-value=0.0041  Score=54.84  Aligned_cols=78  Identities=26%  Similarity=0.423  Sum_probs=50.8

Q ss_pred             eEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-cccEeeHhhh-------
Q 043063          163 RLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-AADAIFMKWV-------  212 (301)
Q Consensus       163 ~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~~D~v~~~~v-------  212 (301)
                      +|||||||+|               +..|+ |..++.|++      ..++.++.+|.|+.++ ..|+|+++==       
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~  192 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP  192 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence            8999999996               35687 777776654      1567777779988754 3577776421       


Q ss_pred             ------hcc------CC--h--HHHHHHHHHHHHhCCCCCEEEE
Q 043063          213 ------LTT------WT--D--DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       213 ------lh~------~~--d--~~~~~iL~~~~~aL~pgg~lli  240 (301)
                            +.+      +.  |  +-..++++.+.+.|+|||.+++
T Consensus       193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l  236 (280)
T COG2890         193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL  236 (280)
T ss_pred             ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence                  100      01  1  2355778888888888665543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=96.55  E-value=0.0033  Score=54.17  Aligned_cols=89  Identities=20%  Similarity=0.357  Sum_probs=60.2

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CC--
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IP--  202 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p--  202 (301)
                      .++-.++ ..+..+||+-|.|+|                .-||. ++..+.|++       .++|++..+|+.++ ++  
T Consensus        31 ~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~  109 (247)
T PF08704_consen   31 YILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEE  109 (247)
T ss_dssp             HHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT
T ss_pred             HHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccccc
Confidence            3455564 888999999999995                23565 555555543       36899999999765 53  


Q ss_pred             ---cccEeeHhhhhccCChHHHHHHHHHHHHhC-CCCCEEEEeccccC
Q 043063          203 ---AADAIFMKWVLTTWTDDECKLIMENCYKAI-PAGGKLIACEPVLP  246 (301)
Q Consensus       203 ---~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL-~pgg~lli~e~~~~  246 (301)
                         ..|.|++     |+|++.  ..+..+.++| +|||++.+.-++++
T Consensus       110 ~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~gG~i~~fsP~ie  150 (247)
T PF08704_consen  110 LESDFDAVFL-----DLPDPW--EAIPHAKRALKKPGGRICCFSPCIE  150 (247)
T ss_dssp             -TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred             ccCcccEEEE-----eCCCHH--HHHHHHHHHHhcCCceEEEECCCHH
Confidence               2487654     788875  7899999999 89999998887664

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PLN02823 spermine synthase

Probab=96.54  E-value=0.0036  Score=56.56  Aligned_cols=81  Identities=20%  Similarity=0.174  Sum_probs=57.1

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~  209 (301)
                      ++++||.||||.|               +++|+ |.+++.+++          .+|++++.+|.+.-+   +. .|+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            5689999999985               45687 788877763          379999999988653   22 599887


Q ss_pred             hhhhccCCh--H---HHHHHHH-HHHHhCCCCCEEEEe
Q 043063          210 KWVLTTWTD--D---ECKLIME-NCYKAIPAGGKLIAC  241 (301)
Q Consensus       210 ~~vlh~~~d--~---~~~~iL~-~~~~aL~pgg~lli~  241 (301)
                      -. ...+..  .   -...+++ .+++.|+|||.+++.
T Consensus       183 D~-~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q  219 (336)
T PLN02823        183 DL-ADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ  219 (336)
T ss_pred             cC-CCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence            52 111110  0   1246787 889999999987764

>TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family

Probab=96.51  E-value=0.0022  Score=55.53  Aligned_cols=55  Identities=15%  Similarity=0.080  Sum_probs=47.3

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++.-+.|+|..|+..|+|+++     +++|++++...
T Consensus        12 l~IL~~l~~~~~~~~l~eia~~lgl----pksT~~RlL~tL~~~G~l~~~-----~~~Y~lG~~~~   68 (248)
T TIGR02431        12 LAVIEAFGAERPRLTLTDVAEATGL----TRAAARRFLLTLVELGYVTSD-----GRLFWLTPRVL   68 (248)
T ss_pred             HHHHHHHhcCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCEEEecHHHH
Confidence            456777763  68999999999999    788999999999999999987     67899998653

Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU.

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=96.41  E-value=0.0062  Score=53.10  Aligned_cols=67  Identities=16%  Similarity=0.269  Sum_probs=45.3

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCcccEeeH
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPAADAIFM  209 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~~D~v~~  209 (301)
                      ..+++..+ ..+..+|||||||+|             +++|. +.+++.+++    .++++++.+|+.+. +|..|.|+.
T Consensus        19 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~Vv~   97 (258)
T PRK14896         19 DRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNKVVS   97 (258)
T ss_pred             HHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceEEEE
Confidence            34445553 556789999999996             46777 566655543    46899999999874 565677765


Q ss_pred             hhhhccCC
Q 043063          210 KWVLTTWT  217 (301)
Q Consensus       210 ~~vlh~~~  217 (301)
                      +-- ++.+
T Consensus        98 NlP-y~i~  104 (258)
T PRK14896         98 NLP-YQIS  104 (258)
T ss_pred             cCC-cccC
Confidence            433 3444

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=96.39  E-value=0.0054  Score=54.46  Aligned_cols=75  Identities=21%  Similarity=0.338  Sum_probs=49.3

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~  206 (301)
                      ..+++..+ ..+..+|||||||.|             +.+|+ +.+++.+++       .++++++.+|+.+. .+..|+
T Consensus        26 ~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~~d~  104 (294)
T PTZ00338         26 DKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPYFDV  104 (294)
T ss_pred             HHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccccCE
Confidence            34555553 666789999999996             46777 666665442       36899999999864 555576


Q ss_pred             eeHhhhhccCChHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIM  225 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL  225 (301)
                      ++. +.-++++.+...++|
T Consensus       105 Vva-NlPY~Istpil~~ll  122 (294)
T PTZ00338        105 CVA-NVPYQISSPLVFKLL  122 (294)
T ss_pred             EEe-cCCcccCcHHHHHHH
Confidence            553 444455555444444

>PLN02672 methionine S-methyltransferase

Probab=96.39  E-value=0.008  Score=61.86  Aligned_cols=49  Identities=22%  Similarity=0.292  Sum_probs=34.6

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC----------------------CCceeEEeCCCCccCC
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------------------IPGVTHIGGDMFKSIP  202 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------------------~~ri~~~~gd~~~~~p  202 (301)
                      ..+|||||||+|               +.+|+ |..++.|++                      .+||+|+.+|+++..+
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            358999999995               45687 666655521                      1489999999987643


Q ss_pred             c----ccEeeH
Q 043063          203 A----ADAIFM  209 (301)
Q Consensus       203 ~----~D~v~~  209 (301)
                      .    .|+|+.
T Consensus       199 ~~~~~fDlIVS  209 (1082)
T PLN02672        199 DNNIELDRIVG  209 (1082)
T ss_pred             ccCCceEEEEE
Confidence            1    376654

>PHA03412 putative methyltransferase; Provisional

Probab=96.39  E-value=0.0065  Score=51.79  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=53.5

Q ss_pred             cceEEeecCCce------------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CC-cccEeeHhhhhccCC-
Q 043063          161 VKRLVDVGGSAG------------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IP-AADAIFMKWVLTTWT-  217 (301)
Q Consensus       161 ~~~vlDvGgG~g------------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p-~~D~v~~~~vlh~~~-  217 (301)
                      ..+|||+|||+|                  +.+|+ +.+++.+++ ..++.++.+|+... .. ..|+|+.+==.+... 
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~  129 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT  129 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence            469999999996                  23465 556666654 36789999999754 33 259988876555322 


Q ss_pred             -h--------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          218 -D--------DECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       218 -d--------~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                       +        .-...+++++.+.++||+ +++--..
T Consensus       130 ~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~ILP~~~  164 (241)
T PHA03412        130 SDFKGKYTGAEFEYKVIERASQIARQGT-FIIPQMS  164 (241)
T ss_pred             cccCCcccccHHHHHHHHHHHHHcCCCE-EEeCccc
Confidence             1        113468999998555554 5443333

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=96.37  E-value=0.0074  Score=54.10  Aligned_cols=131  Identities=14%  Similarity=0.117  Sum_probs=74.8

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC--------CCceeEEe----CCCCccC--Cc--ccEe
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS--------IPGVTHIG----GDMFKSI--PA--ADAI  207 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~--------~~ri~~~~----gd~~~~~--p~--~D~v  207 (301)
                      ...++||||||+|               +..|+ |..++.|++        .+||++..    .+++..+  +.  .|+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            3578999999984               45677 666666543        25787754    3444432  22  4999


Q ss_pred             eHhhhhccCChHH---HHHHHHHHH----------------HhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh
Q 043063          208 FMKWVLTTWTDDE---CKLIMENCY----------------KAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI  268 (301)
Q Consensus       208 ~~~~vlh~~~d~~---~~~iL~~~~----------------~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~  268 (301)
                      ++.==+|.-.++.   ..+-.++..                +.+.+||.+-++..+..+..    .......+-..|   
T Consensus       194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~mi~eS~----~~~~~~gwftsm---  266 (321)
T PRK11727        194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKRMIEESK----AFAKQVLWFTSL---  266 (321)
T ss_pred             EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehHhhHHHH----HHHhhCcEEEEE---
Confidence            9998887544432   112222221                22335555544444443321    000000111111   


Q ss_pred             hhccccccCHHHHHHHHHhCCCCceEEEEccC
Q 043063          269 YRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLD  300 (301)
Q Consensus       269 ~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~  300 (301)
                         =|+.-+...+.+.|++.|.+.+++..+.-
T Consensus       267 ---v~kk~~l~~l~~~L~~~~~~~~~~~e~~q  295 (321)
T PRK11727        267 ---VSKKENLPPLYRALKKVGAVEVKTIEMAQ  295 (321)
T ss_pred             ---eeccCCHHHHHHHHHHcCCceEEEEEEeC
Confidence               25666999999999999998888877643

>PRK11569 transcriptional repressor IclR; Provisional

Probab=96.33  E-value=0.0032  Score=55.37  Aligned_cols=57  Identities=7%  Similarity=0.052  Sum_probs=48.0

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      +.|++.|.+  ++.|+.|||+++|+    ++.-+.|+|..|+..|+|.++.   ..++|++++...
T Consensus        31 l~IL~~l~~~~~~~~lseia~~lgl----pksTv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l~   89 (274)
T PRK11569         31 LKLLEWIAESNGSVALTELAQQAGL----PNSTTHRLLTTMQQQGFVRQVG---ELGHWAIGAHAF   89 (274)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCeEecCHHHH
Confidence            456777764  67999999999999    7889999999999999999873   357899988653

>PLN02476 O-methyltransferase

Probab=96.32  E-value=0.007  Score=53.05  Aligned_cols=84  Identities=17%  Similarity=0.193  Sum_probs=60.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---------cc
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---------AA  204 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---------~~  204 (301)
                      ..+.++|||||+++|                +-+|. |+..+.|++       .++|+++.||..+.++         ..
T Consensus       116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F  195 (278)
T PLN02476        116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY  195 (278)
T ss_pred             hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence            446789999999995                34576 555555543       4799999999876422         24


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |+||+=.     +...-...++.+.+.|+|||.|++-+....
T Consensus       196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNvL~~  232 (278)
T PLN02476        196 DFAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNVLWH  232 (278)
T ss_pred             CEEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecCccC
Confidence            8776643     445567889999999999998776655544

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family

Probab=96.32  E-value=0.026  Score=49.21  Aligned_cols=132  Identities=17%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             CCcceEEeecCCc-----------e-eee--ehhHHHhhCC---------CCCceeEEeCCCCccCC----------c-c
Q 043063          159 KGVKRLVDVGGSA-----------G-INF--DLPEVVAEAP---------SIPGVTHIGGDMFKSIP----------A-A  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~-----------g-~~~--Dlp~v~~~a~---------~~~ri~~~~gd~~~~~p----------~-~  204 (301)
                      .+...||.+|||.           + .+|  |+|++++.-+         ...+..+++.|+...+.          . .
T Consensus        80 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p  159 (260)
T TIGR00027        80 AGIRQVVILGAGLDTRAYRLPWPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP  159 (260)
T ss_pred             cCCcEEEEeCCccccHHHhcCCCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence            3466899999999           1 233  6798876422         24789999999973321          1 1


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhh-hhhhccHH--HHhhhhccccccCHHHH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTR-ALLEGDIF--VMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~-~~~~~d~~--m~~~~~~~g~~rt~~e~  281 (301)
                      -++++-.++.+++.+++.++|+.+.+...||+.|+ .|.+.+-...  .... ........  ...-....+  .+.+++
T Consensus       160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~-~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  234 (260)
T TIGR00027       160 TAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLA-FDYVRPLDGE--WRAGMRAPVYHAARGVDGSGLVFG--IDRADV  234 (260)
T ss_pred             eeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEE-EEeccccchh--HHHHHHHHHHHhhhcccccccccC--CChhhH
Confidence            48888999999999999999999998877887655 5655542211  0100 00000000  000000111  368999


Q ss_pred             HHHHHhCCCCceEE
Q 043063          282 KQLGFSAGFPHLRL  295 (301)
Q Consensus       282 ~~~l~~aGf~~~~~  295 (301)
                      .++|++.||+....
T Consensus       235 ~~~l~~~Gw~~~~~  248 (260)
T TIGR00027       235 AEWLAERGWRASEH  248 (260)
T ss_pred             HHHHHHCCCeeecC
Confidence            99999999998765

This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.

>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B

Probab=96.28  E-value=0.0014  Score=43.62  Aligned_cols=47  Identities=17%  Similarity=0.194  Sum_probs=41.7

Q ss_pred             ccccccccc-CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            7 RDGGKKGRL-ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         7 ~~lglf~~L-~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .++.|++.| ..+|.|+.+||+.+|+    ++..+.+-|+.|...|+|+..+
T Consensus        11 ~R~~Il~~L~~~~~~t~~ela~~l~~----~~~t~s~hL~~L~~aGli~~~~   58 (61)
T PF12840_consen   11 TRLRILRLLASNGPMTVSELAEELGI----SQSTVSYHLKKLEEAGLIEVER   58 (61)
T ss_dssp             HHHHHHHHHHHCSTBEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEec
Confidence            567889999 6689999999999999    7889999999999999999773

...

>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp

Probab=96.26  E-value=0.0061  Score=43.26  Aligned_cols=49  Identities=27%  Similarity=0.425  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      ++.|.++||+++++    ++..+++++..|...|+++..+  |.+|.|.++.-.+
T Consensus        24 ~~~s~~eiA~~~~i----~~~~l~kil~~L~~~Gli~s~~--G~~GGy~L~~~~~   72 (83)
T PF02082_consen   24 KPVSSKEIAERLGI----SPSYLRKILQKLKKAGLIESSR--GRGGGYRLARPPE   72 (83)
T ss_dssp             C-BEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEET--STTSEEEESS-CC
T ss_pred             CCCCHHHHHHHHCc----CHHHHHHHHHHHhhCCeeEecC--CCCCceeecCCHH
Confidence            46899999999999    8999999999999999998764  2457899987543

(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.25  E-value=0.04  Score=46.97  Aligned_cols=131  Identities=15%  Similarity=0.174  Sum_probs=70.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHh-hCCCCCceeEEe-CCCCc----cC----Cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVA-EAPSIPGVTHIG-GDMFK----SI----PA  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~-~a~~~~ri~~~~-gd~~~----~~----p~  203 (301)
                      ..+++.+.......++||+|||+|              +.+|. +.++. ..++.+|+.... .|+..    ++    +.
T Consensus        64 ~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~~~  143 (228)
T TIGR00478        64 KEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDFAT  143 (228)
T ss_pred             HHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCcee
Confidence            344444431124578999999996              45687 43443 455556654322 34431    12    22


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                      .|+.+++..+          +|..+.++|+|+-.++++-+-.+-.+.  ....-.-..|-.        ...+-.+++..
T Consensus       144 ~DvsfiS~~~----------~l~~i~~~l~~~~~~~L~KPqFE~~~~--~~~~~giv~~~~--------~~~~~~~~~~~  203 (228)
T TIGR00478       144 FDVSFISLIS----------ILPELDLLLNPNDLTLLFKPQFEAGRE--KKNKKGVVRDKE--------AIALALHKVID  203 (228)
T ss_pred             eeEEEeehHh----------HHHHHHHHhCcCeEEEEcChHhhhcHh--hcCcCCeecCHH--------HHHHHHHHHHH
Confidence            4888877654          477788889993234444433322110  000000011110        11124667777


Q ss_pred             HHHhCCCCceEEEEcc
Q 043063          284 LGFSAGFPHLRLYRVL  299 (301)
Q Consensus       284 ~l~~aGf~~~~~~~~~  299 (301)
                      .+.+.||++..+.+.+
T Consensus       204 ~~~~~~~~~~~~~~s~  219 (228)
T TIGR00478       204 KGESPDFQEKKIIFSL  219 (228)
T ss_pred             HHHcCCCeEeeEEECC
Confidence            8888999999888765

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein

Probab=96.25  E-value=0.0088  Score=37.25  Aligned_cols=41  Identities=22%  Similarity=0.328  Sum_probs=36.5

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      +.|..+||+.+|+    ....+.+.|+.|...|++...     .+.|.++
T Consensus         8 ~~s~~~la~~l~~----s~~tv~~~l~~L~~~g~l~~~-----~~~~~i~   48 (48)
T smart00419        8 PLTRQEIAELLGL----TRETVSRTLKRLEKEGLISRE-----GGRIVIL   48 (48)
T ss_pred             ccCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe-----CCEEEEC
Confidence            6899999999999    788999999999999999987     5677754

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=96.22  E-value=0.0051  Score=61.27  Aligned_cols=82  Identities=15%  Similarity=0.196  Sum_probs=56.7

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------C-CceeEEeCCCCccC---Cc-ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------I-PGVTHIGGDMFKSI---PA-ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~~---p~-~D~v~~~~v  212 (301)
                      ...+|||+|||+|              +.+|. +..++.+++       . ++++++.+|+++.+   +. .|+|++---
T Consensus       538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP  617 (702)
T PRK11783        538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP  617 (702)
T ss_pred             CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence            4579999999995              45787 677766653       1 48999999988642   22 599987310


Q ss_pred             h--------ccC-ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          213 L--------TTW-TDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       213 l--------h~~-~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      -        ..+ ....-..+++.+.+.|+|||.+++.
T Consensus       618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~  655 (702)
T PRK11783        618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFS  655 (702)
T ss_pred             CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            0        001 0122457889999999999988765

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=96.22  E-value=0.0071  Score=55.97  Aligned_cols=83  Identities=20%  Similarity=0.216  Sum_probs=56.7

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC------C--CceeEEeCCCCccC------C-cccEeeH
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I--PGVTHIGGDMFKSI------P-AADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~~------p-~~D~v~~  209 (301)
                      ...+|||+|||+|              +.+|. +..++.+++      .  ++++++.+|+++.+      . ..|+|++
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil  299 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM  299 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence            4679999999995              45787 666666543      1  47999999998742      1 2499986


Q ss_pred             hhhhccCCh--------HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          210 KWVLTTWTD--------DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       210 ~~vlh~~~d--------~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .--- .-..        ..-..+++.+.+.|+|||.|+.+.+
T Consensus       300 DPP~-f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        300 DPPK-FVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CCCC-CCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            5221 1111        1234566778899999999998764

>PRK04148 hypothetical protein; Provisional

Probab=96.21  E-value=0.012  Score=45.55  Aligned_cols=84  Identities=21%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             hhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCC----cccEeeHhh
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIP----AADAIFMKW  211 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p----~~D~v~~~~  211 (301)
                      +.+.+. -....+++|||||+|              +.+|. |..++.+++ ..++++.+|+|++-+    .+|+|...+
T Consensus         8 l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~-~~~~~v~dDlf~p~~~~y~~a~liysir   85 (134)
T PRK04148          8 IAENYE-KGKNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKK-LGLNAFVDDLFNPNLEIYKNAKLIYSIR   85 (134)
T ss_pred             HHHhcc-cccCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHH-hCCeEEECcCCCCCHHHHhcCCEEEEeC
Confidence            444443 223478999999996              45687 676666643 357999999998733    258887766


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                           |..+.+.-+.++++..+  .-++|...
T Consensus        86 -----pp~el~~~~~~la~~~~--~~~~i~~l  110 (134)
T PRK04148         86 -----PPRDLQPFILELAKKIN--VPLIIKPL  110 (134)
T ss_pred             -----CCHHHHHHHHHHHHHcC--CCEEEEcC
Confidence                 55566666666766543  34555443

>PRK10163 DNA-binding transcriptional repressor AllR; Provisional

Probab=96.20  E-value=0.0041  Score=54.65  Aligned_cols=56  Identities=13%  Similarity=-0.038  Sum_probs=47.3

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++..+.|+|..|+..|+|.++.   ..+.|+++...
T Consensus        28 l~IL~~~~~~~~~~tl~eIa~~lgl----pkStv~RlL~tL~~~G~l~~~~---~~~~Y~lG~~l   85 (271)
T PRK10163         28 IAILQYLEKSGGSSSVSDISLNLDL----PLSTTFRLLKVLQAADFVYQDS---QLGWWHIGLGV   85 (271)
T ss_pred             HHHHHHHHhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCeEEecHHH
Confidence            456777764  57899999999999    7899999999999999998873   36789998854

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=96.19  E-value=0.0057  Score=51.09  Aligned_cols=81  Identities=6%  Similarity=0.020  Sum_probs=50.1

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC--c--ccEeeHhhhhc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP--A--ADAIFMKWVLT  214 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p--~--~D~v~~~~vlh  214 (301)
                      ...++||+|||+|              +.+|. +..++.+++      ..+++++.+|+++.++  .  .|+|++.=-.+
T Consensus        53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~  132 (199)
T PRK10909         53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR  132 (199)
T ss_pred             CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence            3468999999995              35575 555554443      2579999999876432  2  59888765532


Q ss_pred             cCChHHHHHHHHHHHH--hCCCCCEEEEecc
Q 043063          215 TWTDDECKLIMENCYK--AIPAGGKLIACEP  243 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~--aL~pgg~lli~e~  243 (301)
                      .-   -...+++.+.+  .|.|++.++|-..
T Consensus       133 ~g---~~~~~l~~l~~~~~l~~~~iv~ve~~  160 (199)
T PRK10909        133 KG---LLEETINLLEDNGWLADEALIYVESE  160 (199)
T ss_pred             CC---hHHHHHHHHHHCCCcCCCcEEEEEec
Confidence            21   12344454444  3788776555433

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=96.11  E-value=0.0075  Score=49.23  Aligned_cols=86  Identities=19%  Similarity=0.179  Sum_probs=50.9

Q ss_pred             CCcceEEeecCCce---------------eeeehhHHHhhCC---------CCCceeEEeCCCCcc-----C-C-cccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDLPEVVAEAP---------SIPGVTHIGGDMFKS-----I-P-AADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~---------~~~ri~~~~gd~~~~-----~-p-~~D~v  207 (301)
                      ....+||++|||+|               +.=|.+++++..+         ...++++...|.-++     . + ..|+|
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I  123 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI  123 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence            34679999999996               1227665554432         136788888876553     1 2 25999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +.+-++++  ++....+++.+.+.|+|+|.+++......
T Consensus       124 lasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~~~R~  160 (173)
T PF10294_consen  124 LASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAYKRRR  160 (173)
T ss_dssp             EEES--S---GGGHHHHHHHHHHHBTT-TTEEEEEE-S-
T ss_pred             EEecccch--HHHHHHHHHHHHHHhCCCCEEEEEeCEec
Confidence            99999974  56678999999999999988777776553

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=96.11  E-value=0.011  Score=52.13  Aligned_cols=82  Identities=23%  Similarity=0.283  Sum_probs=61.0

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~-~D~v~  208 (301)
                      ++.++||-||||.|               +..|+ |.|++.+++          .+|++++.+|.++-   .+. .|+|+
T Consensus        75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi  154 (282)
T COG0421          75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII  154 (282)
T ss_pred             CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence            34579999999996               56788 888888764          38999999998865   333 59887


Q ss_pred             HhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEe
Q 043063          209 MKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       209 ~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      +=..=. ....   -...+++.++++|+++|.++..
T Consensus       155 ~D~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q  189 (282)
T COG0421         155 VDSTDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ  189 (282)
T ss_pred             EcCCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence            654322 1110   1258999999999999998888

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=96.05  E-value=0.014  Score=55.02  Aligned_cols=77  Identities=13%  Similarity=0.152  Sum_probs=49.7

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC-----C-c-ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI-----P-A-ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~-----p-~-~D~v~~~  210 (301)
                      ..+..+|||+|||+|             +.+|. +.+++.|++      .++++|+.+|+.+.+     + . .|+|++.
T Consensus       295 ~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d  374 (443)
T PRK13168        295 PQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD  374 (443)
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence            445679999999996             46787 777777654      257999999986532     1 2 4888652


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                           =|......+++.+.+ ++|++.++|
T Consensus       375 -----PPr~g~~~~~~~l~~-~~~~~ivyv  398 (443)
T PRK13168        375 -----PPRAGAAEVMQALAK-LGPKRIVYV  398 (443)
T ss_pred             -----cCCcChHHHHHHHHh-cCCCeEEEE
Confidence                 222223355555554 677765444

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=96.04  E-value=0.0076  Score=53.75  Aligned_cols=79  Identities=22%  Similarity=0.290  Sum_probs=54.9

Q ss_pred             cceEEeecCCcee--------------eeehhHHHhhCCC-------CCceeEEeCCCCcc-CC-c-ccEeeHhhhhccC
Q 043063          161 VKRLVDVGGSAGI--------------NFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IP-A-ADAIFMKWVLTTW  216 (301)
Q Consensus       161 ~~~vlDvGgG~g~--------------~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~~  216 (301)
                      .++|||||||+|+              .+|-.++++.+.+       .+.|++..|.+.+- +| . .|+|+.-++=+.+
T Consensus        61 dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy~L  140 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGYFL  140 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhCcceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhHHH
Confidence            4799999999973              4566666655543       36799999988764 77 3 4999877766553


Q ss_pred             C-hHHHHHHHHHHHHhCCCCCEEE
Q 043063          217 T-DDECKLIMENCYKAIPAGGKLI  239 (301)
Q Consensus       217 ~-d~~~~~iL~~~~~aL~pgg~ll  239 (301)
                      - +.....+|-.==+.|+|||.++
T Consensus       141 l~EsMldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  141 LYESMLDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             HHhhhhhhhhhhhhhccCCCceEc
Confidence            2 3344455555557899999765

>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family

Probab=96.03  E-value=0.013  Score=39.45  Aligned_cols=45  Identities=27%  Similarity=0.428  Sum_probs=39.6

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .++.|..+||+.+|+    .+..+.+.|+.|...|++...    ..+.|.+++
T Consensus        23 ~~~~s~~ela~~~g~----s~~tv~r~l~~L~~~g~i~~~----~~~~~~l~~   67 (67)
T cd00092          23 QLPLTRQEIADYLGL----TRETVSRTLKELEEEGLISRR----GRGKYRVNP   67 (67)
T ss_pred             cCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec----CCCeEEeCC
Confidence            368999999999999    789999999999999999988    237888764

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=96.02  E-value=0.0075  Score=52.98  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=36.9

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS  200 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~  200 (301)
                      .+++.++ .....+|||||||+|             +++|. +.+++.+++   .++++++.+|+.+.
T Consensus        33 ~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~   99 (272)
T PRK00274         33 KIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAEDNLTIIEGDALKV   99 (272)
T ss_pred             HHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhccCceEEEEChhhcC
Confidence            3444453 666789999999996             56787 777776654   26899999998764

>PRK09834 DNA-binding transcriptional activator MhpR; Provisional

Probab=95.98  E-value=0.0057  Score=53.49  Aligned_cols=59  Identities=14%  Similarity=0.079  Sum_probs=48.5

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL   74 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l   74 (301)
                      +.|++.|..  ++.|+.|||+.+|+    ++..+.|+|+.|+..|++.+++   .++.|++++....+
T Consensus        14 l~iL~~l~~~~~~ls~~eia~~lgl----~kstv~RlL~tL~~~g~v~~~~---~~~~Y~Lg~~~~~l   74 (263)
T PRK09834         14 LMVLRALNRLDGGATVGLLAELTGL----HRTTVRRLLETLQEEGYVRRSA---SDDSFRLTLKVRQL   74 (263)
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEec---CCCcEEEcHHHHHH
Confidence            456677753  46999999999999    8899999999999999999874   35789999866444

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.95  E-value=0.0029  Score=59.01  Aligned_cols=46  Identities=17%  Similarity=0.459  Sum_probs=38.3

Q ss_pred             cCCc-c-cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          200 SIPA-A-DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       200 ~~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      ++|. + |+|.|++++..|.+.+ ..+|-.+-+.|+|||.+++.-+-..
T Consensus       176 Pfp~~~fDmvHcsrc~i~W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~  223 (506)
T PF03141_consen  176 PFPSNAFDMVHCSRCLIPWHPND-GFLLFEVDRVLRPGGYFVLSGPPVY  223 (506)
T ss_pred             cCCccchhhhhcccccccchhcc-cceeehhhhhhccCceEEecCCccc
Confidence            4665 3 9999999999998876 3688889999999999888776554

; GO: 0008168 methyltransferase activity

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=95.95  E-value=0.031  Score=47.07  Aligned_cols=125  Identities=22%  Similarity=0.244  Sum_probs=74.8

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCCC--Cce--eEEeCCCCc-cCCc--ccEeeHhhhhccCCh
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPSI--PGV--THIGGDMFK-SIPA--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~--~ri--~~~~gd~~~-~~p~--~D~v~~~~vlh~~~d  218 (301)
                      ...++||||+.|              +..|. -.+++.++..  +.|  ....+|-.. ++.+  .|+++.+..+|-.+|
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~Nd  152 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLHWTND  152 (325)
T ss_pred             CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhhhhcc
Confidence            468999999996              34465 5667666542  333  334454221 2333  399999999985554


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccccc------CHHHHHHHHHhCCCCc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHM------TEQEFKQLGFSAGFPH  292 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~r------t~~e~~~~l~~aGf~~  292 (301)
                        ...-+.+|+.+|||+|.++-  .+...+  .  ..+.....-+.-+-  ..+|...      ...++..+|..|||..
T Consensus       153 --LPg~m~~ck~~lKPDg~Fia--smlggd--T--LyELR~slqLAelE--R~GGiSphiSPf~qvrDiG~LL~rAGF~m  222 (325)
T KOG2940|consen  153 --LPGSMIQCKLALKPDGLFIA--SMLGGD--T--LYELRCSLQLAELE--REGGISPHISPFTQVRDIGNLLTRAGFSM  222 (325)
T ss_pred             --CchHHHHHHHhcCCCccchh--HHhccc--c--HHHHHHHhhHHHHH--hccCCCCCcChhhhhhhhhhHHhhcCccc
Confidence              35778889999999996652  222211  1  22222233322221  2334332      3567788999999987


Q ss_pred             eEE
Q 043063          293 LRL  295 (301)
Q Consensus       293 ~~~  295 (301)
                      ..+
T Consensus       223 ~tv  225 (325)
T KOG2940|consen  223 LTV  225 (325)
T ss_pred             cee
Confidence            654

>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A

Probab=95.88  E-value=0.0055  Score=41.45  Aligned_cols=57  Identities=25%  Similarity=0.430  Sum_probs=40.7

Q ss_pred             cccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhc
Q 043063           11 KKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIG   71 (301)
Q Consensus        11 lf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s   71 (301)
                      ++..|.  .++.|..+|++.+++    +...+.+.++.|...|+|++.+..  +....|++|+.+
T Consensus         8 vL~~l~~~~~~~t~~~l~~~~~~----~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~G   68 (68)
T PF13463_consen    8 VLRALAHSDGPMTQSDLAERLGI----SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPAG   68 (68)
T ss_dssp             HHHHHT--TS-BEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HHH
T ss_pred             HHHHHHccCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCCC
Confidence            444555  488999999999999    899999999999999999776422  111358888753

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=95.83  E-value=0.015  Score=47.37  Aligned_cols=85  Identities=15%  Similarity=0.200  Sum_probs=64.3

Q ss_pred             ceEEeecCCcee-------------eeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCcccEeeHhhhhccCChHH
Q 043063          162 KRLVDVGGSAGI-------------NFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPAADAIFMKWVLTTWTDDE  220 (301)
Q Consensus       162 ~~vlDvGgG~g~-------------~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~~~d~~  220 (301)
                      ..+.|+|.|+|+             .++. |...+-+.+      ..+++++.||..+- +..+|+|+|-..=.-+=+++
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~E~  113 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIEEK  113 (252)
T ss_pred             hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhccc
Confidence            468899999974             3444 554444443      37899999999875 76789999987665666777


Q ss_pred             HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          221 CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       221 ~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .+.+++++.+-|+-+++++=.+....
T Consensus       114 qVpV~n~vleFLr~d~tiiPq~v~~~  139 (252)
T COG4076         114 QVPVINAVLEFLRYDPTIIPQEVRIG  139 (252)
T ss_pred             ccHHHHHHHHHhhcCCccccHHHhhc
Confidence            78999999999999888876665443

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=95.83  E-value=0.0036  Score=52.55  Aligned_cols=83  Identities=22%  Similarity=0.360  Sum_probs=58.3

Q ss_pred             CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---------ccc
Q 043063          159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---------AAD  205 (301)
Q Consensus       159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---------~~D  205 (301)
                      .+.++||+||+++|                +-+|. |+..+.|++       .+||+++.||..+.++         ..|
T Consensus        44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD  123 (205)
T PF01596_consen   44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD  123 (205)
T ss_dssp             HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred             cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence            35789999999995                34565 555555543       4799999999875322         249


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +||+=.     +...-...+..+.+.|+|||.+++-+....
T Consensus       124 ~VFiDa-----~K~~y~~y~~~~~~ll~~ggvii~DN~l~~  159 (205)
T PF01596_consen  124 FVFIDA-----DKRNYLEYFEKALPLLRPGGVIIADNVLWR  159 (205)
T ss_dssp             EEEEES-----TGGGHHHHHHHHHHHEEEEEEEEEETTTGG
T ss_pred             EEEEcc-----cccchhhHHHHHhhhccCCeEEEEcccccc
Confidence            887754     445567888899999999998877666553

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis

Probab=95.80  E-value=0.0021  Score=43.80  Aligned_cols=46  Identities=20%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      |..++..|. .|+.|+.+||+.+|+    +...+.+.|+.|...|++.+.+
T Consensus        10 E~~vy~~Ll~~~~~t~~eIa~~l~i----~~~~v~~~L~~L~~~GlV~~~~   56 (68)
T PF01978_consen   10 EAKVYLALLKNGPATAEEIAEELGI----SRSTVYRALKSLEEKGLVEREE   56 (68)
T ss_dssp             HHHHHHHHHHHCHEEHHHHHHHHTS----SHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEc
Confidence            344555664 589999999999999    7999999999999999999884

TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.75  E-value=0.019  Score=50.23  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=48.9

Q ss_pred             CcceEEeecCCc-----------------eeeeeh-hHHHhhCCC--------CCceeEEeCCCCcc---CCcccEeeHh
Q 043063          160 GVKRLVDVGGSA-----------------GINFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPAADAIFMK  210 (301)
Q Consensus       160 ~~~~vlDvGgG~-----------------g~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~---~p~~D~v~~~  210 (301)
                      .+.+|+=||+|.                 .+++|. |+.++.+++        ..+++|+.+|..+.   +...|+|++.
T Consensus       120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA  199 (276)
T PF03059_consen  120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA  199 (276)
T ss_dssp             ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred             ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence            356999999998                 146787 766666543        47999999998754   2335988888


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .... .+.++-.++|+++.+.|+||.+|++-
T Consensus       200 alVg-~~~e~K~~Il~~l~~~m~~ga~l~~R  229 (276)
T PF03059_consen  200 ALVG-MDAEPKEEILEHLAKHMAPGARLVVR  229 (276)
T ss_dssp             TT-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred             hhcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence            7663 33334469999999999999988865

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>COG4742 Predicted transcriptional regulator [Transcription]

Probab=95.72  E-value=0.0085  Score=51.61  Aligned_cols=61  Identities=18%  Similarity=0.298  Sum_probs=54.5

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      .+.+|+-.|.+||+|.+||-..+++    .+..+..=++-|...|++.++     ++.|++|.+++.++.
T Consensus        14 kRk~lLllL~egPkti~EI~~~l~v----s~~ai~pqiKkL~~~~LV~~~-----~~~Y~LS~~G~iiv~   74 (260)
T COG4742          14 KRKDLLLLLKEGPKTIEEIKNELNV----SSSAILPQIKKLKDKGLVVQE-----GDRYSLSSLGKIIVE   74 (260)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHhCC----CcHHHHHHHHHHhhCCCEEec-----CCEEEecchHHHHHH
Confidence            4566777888899999999999999    688999999999999999998     789999999988774

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=95.72  E-value=0.0091  Score=49.73  Aligned_cols=81  Identities=21%  Similarity=0.436  Sum_probs=50.1

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCC------CCCceeEEeCCCCcc----CCc-c-cEeeHhhhh
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAP------SIPGVTHIGGDMFKS----IPA-A-DAIFMKWVL  213 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~------~~~ri~~~~gd~~~~----~p~-~-D~v~~~~vl  213 (301)
                      ..+||||||.|               +++|. ...+..+.      ...++.++.+|...-    ++. . |-|++.+-=
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FPD   98 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFPD   98 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES--
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCCC
Confidence            38999999997               67786 44444432      258999999998763    342 2 443332211


Q ss_pred             ccCChHH-------HHHHHHHHHHhCCCCCEEEEecc
Q 043063          214 TTWTDDE-------CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       214 h~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                       .|+...       ...+|+.+++.|+|||.|.+..-
T Consensus        99 -PWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD  134 (195)
T PF02390_consen   99 -PWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATD  134 (195)
T ss_dssp             ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES
T ss_pred             -CCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeC
Confidence             133211       34789999999999998876653

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>COG3355 Predicted transcriptional regulator [Transcription]

Probab=95.65  E-value=0.013  Score=44.67  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=38.3

Q ss_pred             cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      ..++..|-  +||.|+++||+.++.    +...+.+-|+-|...|++.+.+
T Consensus        30 v~v~~~LL~~~~~~tvdelae~lnr----~rStv~rsl~~L~~~GlV~Rek   76 (126)
T COG3355          30 VEVYKALLEENGPLTVDELAEILNR----SRSTVYRSLQNLLEAGLVEREK   76 (126)
T ss_pred             HHHHHHHHhhcCCcCHHHHHHHHCc----cHHHHHHHHHHHHHcCCeeeee
Confidence            33444443  699999999999999    7889999999999999999884

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.64  E-value=0.0072  Score=52.27  Aligned_cols=84  Identities=25%  Similarity=0.293  Sum_probs=59.2

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v  207 (301)
                      .++.+||-||+|.|               +++|+ |.|++.+++          .+|++++.+|.+.-   .+.  .|+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            36789999999985               46787 788877654          37999999998753   333  5988


Q ss_pred             eHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEec
Q 043063          208 FMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       208 ~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +.-..-...+..  -...+++.+++.|+|||.+++.-
T Consensus       155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~  191 (246)
T PF01564_consen  155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA  191 (246)
T ss_dssp             EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence            763322111111  13589999999999999988776

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PRK00536 speE spermidine synthase; Provisional

Probab=95.48  E-value=0.034  Score=48.35  Aligned_cols=76  Identities=16%  Similarity=0.093  Sum_probs=53.8

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccCC-cccEeeHhhhh
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSIP-AADAIFMKWVL  213 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~p-~~D~v~~~~vl  213 (301)
                      .++++||-||||-|             +.+|+ +.|++.+++          .+|++++.. +.+... ..|+|+.=.. 
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIvDs~-  148 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIICLQE-  148 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEEcCC-
Confidence            46799999999996             45676 677776654          479999872 222122 3599886532 


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                         .+   ....+.++++|+|||.++..-
T Consensus       149 ---~~---~~fy~~~~~~L~~~Gi~v~Qs  171 (262)
T PRK00536        149 ---PD---IHKIDGLKRMLKEDGVFISVA  171 (262)
T ss_pred             ---CC---hHHHHHHHHhcCCCcEEEECC
Confidence               22   377899999999999888754

>PRK10857 DNA-binding transcriptional regulator IscR; Provisional

Probab=95.46  E-value=0.013  Score=47.38  Aligned_cols=48  Identities=23%  Similarity=0.281  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.|+++||+++++    ++..++++|..|...|+|...+  |.+|.|++..-.
T Consensus        24 ~~vs~~eIA~~~~i----p~~~l~kIl~~L~~aGLv~s~r--G~~GGy~Lar~p   71 (164)
T PRK10857         24 GPVPLADISERQGI----SLSYLEQLFSRLRKNGLVSSVR--GPGGGYLLGKDA   71 (164)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--CCCCCeeccCCH
Confidence            58999999999999    7999999999999999999753  246779887643

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.43  E-value=0.016  Score=47.41  Aligned_cols=54  Identities=22%  Similarity=0.346  Sum_probs=38.0

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVL  213 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vl  213 (301)
                      ..++|+|+|||+|              +.+|+ |+.++.+++     ..+|.|+..|+.+.-...|.++++--+
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF  118 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF  118 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence            3578999999996              45787 777777665     368999999986443334666655433

>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure

Probab=95.40  E-value=0.015  Score=41.94  Aligned_cols=62  Identities=26%  Similarity=0.236  Sum_probs=48.0

Q ss_pred             ccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCC--CeEecChhchhhh
Q 043063           10 GKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGE--RKYSLTEIGKSLV   75 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~s~~l~   75 (301)
                      -|+..|..|+....||.+.+ |+    .+..|.+-|+.|...|++.+......+  -.|++|+.++.|.
T Consensus         9 ~IL~~l~~g~~rf~el~~~l~~i----s~~~L~~~L~~L~~~GLv~r~~~~~~p~~v~Y~LT~~G~~l~   73 (90)
T PF01638_consen    9 LILRALFQGPMRFSELQRRLPGI----SPKVLSQRLKELEEAGLVERRVYPEVPPRVEYSLTEKGKELL   73 (90)
T ss_dssp             HHHHHHTTSSEEHHHHHHHSTTS-----HHHHHHHHHHHHHTTSEEEEEESSSSSEEEEEE-HHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHhcchh----HHHHHHHHHHHHHHcchhhcccccCCCCCCccCCCcCHHHHH
Confidence            35566777999999999999 88    799999999999999999886421111  2599999998776

The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.

>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A

Probab=95.35  E-value=0.0043  Score=43.75  Aligned_cols=62  Identities=24%  Similarity=0.250  Sum_probs=48.4

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC----eEecChhchh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER----KYSLTEIGKS   73 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~s~~   73 (301)
                      ++++|...|.. +..+..+|.+.+|+    +...+.+.|+.|...|+++..... .++    .|++|+.++.
T Consensus         1 vRl~Il~~L~~~~~~~f~~L~~~l~l----t~g~Ls~hL~~Le~~GyV~~~k~~-~~~~p~t~~~lT~~Gr~   67 (80)
T PF13601_consen    1 VRLAILALLYANEEATFSELKEELGL----TDGNLSKHLKKLEEAGYVEVEKEF-EGRRPRTWYSLTDKGRE   67 (80)
T ss_dssp             HHHHHHHHHHHHSEEEHHHHHHHTT------HHHHHHHHHHHHHTTSEEEEEE--SSS--EEEEEE-HHHHH
T ss_pred             CHHHHHHHHhhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEEEec-cCCCCeEEEEECHHHHH
Confidence            46778888876 78999999999999    899999999999999999987532 112    4999998864

>PRK10141 DNA-binding transcriptional repressor ArsR; Provisional

Probab=95.32  E-value=0.012  Score=44.68  Aligned_cols=58  Identities=19%  Similarity=0.197  Sum_probs=47.3

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .++.|+..|.. ++.++.||++.+++    .+..+.+-|+.|...|+|...+.+ ..-.|++++
T Consensus        17 tRl~IL~~L~~~~~~~v~ela~~l~l----sqstvS~HL~~L~~AGLV~~~r~G-r~~~Y~l~~   75 (117)
T PRK10141         17 TRLGIVLLLRESGELCVCDLCTALDQ----SQPKISRHLALLRESGLLLDRKQG-KWVHYRLSP   75 (117)
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEc-CEEEEEECc
Confidence            56788999974 78999999999999    688999999999999999877521 122477765

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=95.27  E-value=0.011  Score=48.90  Aligned_cols=132  Identities=15%  Similarity=0.188  Sum_probs=74.2

Q ss_pred             CC-CcceEEeecCCceeeeeh--hHHHhh-CCC-----CCceeEEeCCCCcc---CCc---ccEeeHhhhhccCChHHHH
Q 043063          158 FK-GVKRLVDVGGSAGINFDL--PEVVAE-APS-----IPGVTHIGGDMFKS---IPA---ADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       158 ~~-~~~~vlDvGgG~g~~~Dl--p~v~~~-a~~-----~~ri~~~~gd~~~~---~p~---~D~v~~~~vlh~~~d~~~~  222 (301)
                      |. .+.++||+|+|.|-+-..  |..-+. |.+     .+|.+....+....   +..   .|+|.|-++|.-..+.  -
T Consensus       109 w~~~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~~p--~  186 (288)
T KOG3987|consen  109 WGQEPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCFDP--F  186 (288)
T ss_pred             cCCCCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCCceeeehhhhhcCceeehHHHHHHHHhhcCh--H
Confidence            43 368999999999832111  211111 011     24444444444433   111   4999999999765554  5


Q ss_pred             HHHHHHHHhCCC-CCEEEEecc--ccC---CCCCChHHhhhhhhccHHHHhhhhcccccc--CHHHHHHHHHhCCCCceE
Q 043063          223 LIMENCYKAIPA-GGKLIACEP--VLP---DDSNESQRTRALLEGDIFVMTIYRAKGKHM--TEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       223 ~iL~~~~~aL~p-gg~lli~e~--~~~---~~~~~~~~~~~~~~~d~~m~~~~~~~g~~r--t~~e~~~~l~~aGf~~~~  294 (301)
                      ++|+.++.+|.| .|++++.-.  +.+   .+.+..| .+.    | ..+   ..+|+.+  ....+-++|+.+||.+..
T Consensus       187 kLL~Di~~vl~psngrvivaLVLP~~hYVE~N~~g~~-~rP----d-n~L---e~~Gr~~ee~v~~~~e~lr~~g~~vea  257 (288)
T KOG3987|consen  187 KLLEDIHLVLAPSNGRVIVALVLPYMHYVETNTSGLP-LRP----D-NLL---ENNGRSFEEEVARFMELLRNCGYRVEA  257 (288)
T ss_pred             HHHHHHHHHhccCCCcEEEEEEecccceeecCCCCCc-CCc----h-HHH---HhcCccHHHHHHHHHHHHHhcCchhhh
Confidence            999999999999 687766432  211   1111001 011    1 111   1234432  334467889999999988


Q ss_pred             EEEccC
Q 043063          295 LYRVLD  300 (301)
Q Consensus       295 ~~~~~~  300 (301)
                      ...++|
T Consensus       258 wTrlPY  263 (288)
T KOG3987|consen  258 WTRLPY  263 (288)
T ss_pred             hhcCCe
Confidence            777765

>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A

Probab=95.22  E-value=0.0075  Score=37.85  Aligned_cols=43  Identities=12%  Similarity=0.208  Sum_probs=35.7

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCccee
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFS   54 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~   54 (301)
                      +..|+..|.+ ++.|..+||+.+|+    ....+.+.|+-|...|+++
T Consensus         5 ~~~Il~~l~~~~~~t~~ela~~~~i----s~~tv~~~l~~L~~~g~I~   48 (48)
T PF13412_consen    5 QRKILNYLRENPRITQKELAEKLGI----SRSTVNRYLKKLEEKGLIE   48 (48)
T ss_dssp             HHHHHHHHHHCTTS-HHHHHHHHTS-----HHHHHHHHHHHHHTTSEE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCcCcC
Confidence            4557777875 67999999999999    7899999999999999984

...

>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein

Probab=95.14  E-value=0.018  Score=41.83  Aligned_cols=64  Identities=25%  Similarity=0.232  Sum_probs=48.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+|++.+++    ++..+.+.|+.|+..|+|.+....+  ....|.+|+.+..+.
T Consensus        12 ~~~il~~l~~~~~~~~~~la~~~~~----s~~~i~~~l~~L~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~   78 (101)
T smart00347       12 QFLVLRILYEEGPLSVSELAKRLGV----SPSTVTRVLDRLEKKGLIRRLPSPEDRRSVLVSLTEEGRELI   78 (101)
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCC----CchhHHHHHHHHHHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence            5567777764 67999999999999    7889999999999999998773210  112577888776544

>PHA00738 putative HTH transcription regulator

Probab=95.08  E-value=0.014  Score=43.03  Aligned_cols=60  Identities=22%  Similarity=0.119  Sum_probs=48.4

Q ss_pred             cccccccccCCC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            7 RDGGKKGRLANT-PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~g-~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      .++.|++.|..+ +.++.+|++.+++    ....+.+-|+.|...|+|...+.+ ..-.|++++..
T Consensus        13 tRr~IL~lL~~~e~~~V~eLae~l~l----SQptVS~HLKvLreAGLV~srK~G-r~vyY~Ln~~~   73 (108)
T PHA00738         13 LRRKILELIAENYILSASLISHTLLL----SYTTVLRHLKILNEQGYIELYKEG-RTLYAKIRENS   73 (108)
T ss_pred             HHHHHHHHHHHcCCccHHHHHHhhCC----CHHHHHHHHHHHHHCCceEEEEEC-CEEEEEECCCc
Confidence            567899999875 6999999999999    677999999999999999988522 22357777643

>PRK03902 manganese transport transcriptional regulator; Provisional

Probab=95.06  E-value=0.029  Score=44.11  Aligned_cols=51  Identities=16%  Similarity=0.154  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .|+.++.+||+.+++    .+..+.+.|+.|...|+|.+..    ...|++|+.++.+.
T Consensus        20 ~~~~~~~ela~~l~v----s~~svs~~l~~L~~~Gli~~~~----~~~i~LT~~G~~~a   70 (142)
T PRK03902         20 KGYARVSDIAEALSV----HPSSVTKMVQKLDKDEYLIYEK----YRGLVLTPKGKKIG   70 (142)
T ss_pred             CCCcCHHHHHHHhCC----ChhHHHHHHHHHHHCCCEEEec----CceEEECHHHHHHH
Confidence            378899999999999    7889999999999999998752    56899999986543

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=94.90  E-value=0.039  Score=47.68  Aligned_cols=82  Identities=15%  Similarity=0.182  Sum_probs=56.5

Q ss_pred             CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC----------cc
Q 043063          159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP----------AA  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p----------~~  204 (301)
                      .+.+++|+||.++|                +-+|. |+..+.|++       .++|+++.||..+-+|          ..
T Consensus        78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f  157 (247)
T PLN02589         78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF  157 (247)
T ss_pred             hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence            35789999999885                34565 555555543       4899999999876422          24


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      |+||+=.     ....-...++.+.+.|+|||.|++-+...
T Consensus       158 D~iFiDa-----dK~~Y~~y~~~~l~ll~~GGviv~DNvl~  193 (247)
T PLN02589        158 DFIFVDA-----DKDNYINYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_pred             cEEEecC-----CHHHhHHHHHHHHHhcCCCeEEEEcCCCC
Confidence            8877653     34445678888889999999766544443

>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR

Probab=94.87  E-value=0.042  Score=42.83  Aligned_cols=48  Identities=21%  Similarity=0.285  Sum_probs=40.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.|.++||+.+++    ++..++++|..|...|++...+  |.+|.|+++.-.
T Consensus        24 ~~~s~~~ia~~~~i----p~~~l~kil~~L~~~glv~s~~--G~~Ggy~l~~~~   71 (135)
T TIGR02010        24 GPVTLADISERQGI----SLSYLEQLFAKLRKAGLVKSVR--GPGGGYQLGRPA   71 (135)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEe--CCCCCEeccCCH
Confidence            47899999999999    7999999999999999998653  235679887644

This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.

>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif

Probab=94.86  E-value=0.0093  Score=40.72  Aligned_cols=43  Identities=14%  Similarity=0.170  Sum_probs=35.1

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      |.+.|.. +..|..+||.++++    ++..++.+|..|+..|.|.+..
T Consensus         5 i~~~l~~~~~~S~~eLa~~~~~----s~~~ve~mL~~l~~kG~I~~~~   48 (69)
T PF09012_consen    5 IRDYLRERGRVSLAELAREFGI----SPEAVEAMLEQLIRKGYIRKVD   48 (69)
T ss_dssp             HHHHHHHS-SEEHHHHHHHTT------HHHHHHHHHHHHCCTSCEEEE
T ss_pred             HHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEec
Confidence            4455654 78999999999999    8999999999999999999873

FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.

>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A

Probab=94.84  E-value=0.017  Score=38.46  Aligned_cols=43  Identities=14%  Similarity=0.094  Sum_probs=35.3

Q ss_pred             cccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           11 KKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        11 lf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      |.+.|..  +|.|..|||+++|+    +...++++|..|...|.+.+.+
T Consensus         5 Il~~i~~~~~p~~T~eiA~~~gl----s~~~aR~yL~~Le~eG~V~~~~   49 (62)
T PF04703_consen    5 ILEYIKEQNGPLKTREIADALGL----SIYQARYYLEKLEKEGKVERSP   49 (62)
T ss_dssp             HHHHHHHHTS-EEHHHHHHHHTS-----HHHHHHHHHHHHHCTSEEEES
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEec
Confidence            4455543  79999999999999    7889999999999999999763

>TIGR00122 birA_repr_reg BirA biotin operon repressor domain

Probab=94.83  E-value=0.03  Score=38.08  Aligned_cols=56  Identities=16%  Similarity=0.141  Sum_probs=45.1

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.++..|.+++.|..+||+++|+    ....+.+-++.|.+.|+.....    +..|++.+..
T Consensus         2 ~~~il~~L~~~~~~~~eLa~~l~v----S~~tv~~~l~~L~~~g~~i~~~----~~g~~l~~~~   57 (69)
T TIGR00122         2 PLRLLALLADNPFSGEKLGEALGM----SRTAVNKHIQTLREWGVDVLTV----GKGYRLPPPI   57 (69)
T ss_pred             hHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEec----CCceEecCcc
Confidence            456778888889999999999999    6889999999999999965542    4567775543

This model may recognize some other putative repressor proteins, such as DnrO of Streptomyces peucetius with scores below the noise cutoff but with significance shown by low E-value.

>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor

Probab=94.81  E-value=0.042  Score=36.13  Aligned_cols=54  Identities=22%  Similarity=0.217  Sum_probs=41.1

Q ss_pred             cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      |+..|..++.|..+|++.+++    +...+.+.|+.|...|++.....+ ....|.++.
T Consensus         2 il~~l~~~~~~~~~i~~~l~i----s~~~v~~~l~~L~~~g~i~~~~~~-~~~~~~~~~   55 (66)
T smart00418        2 ILKLLAEGELCVCELAEILGL----SQSTVSHHLKKLREAGLVESRREG-KRVYYSLTD   55 (66)
T ss_pred             HHHHhhcCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeecC-CEEEEEEch
Confidence            344455678999999999999    788999999999999999976311 223465555

>COG1959 Predicted transcriptional regulator [Transcription]

Probab=94.68  E-value=0.047  Score=43.41  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=42.1

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      +.|+++||+..|+    ++..|+++|..|...|+|.-.+  |.+|.|+++.-.+
T Consensus        25 ~~s~~~IA~~~~i----s~~~L~kil~~L~kaGlV~S~r--G~~GGy~Lar~~~   72 (150)
T COG1959          25 PVSSAEIAERQGI----SPSYLEKILSKLRKAGLVKSVR--GKGGGYRLARPPE   72 (150)
T ss_pred             cccHHHHHHHhCc----CHHHHHHHHHHHHHcCCEEeec--CCCCCccCCCChH
Confidence            7899999999999    7999999999999999999874  3467899987543

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=94.62  E-value=0.052  Score=45.83  Aligned_cols=84  Identities=18%  Similarity=0.326  Sum_probs=60.1

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEe-CCCCccC-----CcccEe
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIG-GDMFKSI-----PAADAI  207 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~-gd~~~~~-----p~~D~v  207 (301)
                      .++.+++|+||.+.|                +-+|. |+..+.|++       .++|++.. ||..+.+     +..|+|
T Consensus        57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli  136 (219)
T COG4122          57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV  136 (219)
T ss_pred             hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence            457899999999995                34676 677766654       47898888 5776542     124988


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |+=.     ....-...|..+-+.|+|||.+++-+...+
T Consensus       137 FIDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~  170 (219)
T COG4122         137 FIDA-----DKADYPEYLERALPLLRPGGLIVADNVLFG  170 (219)
T ss_pred             EEeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence            7643     444557899999999999997766555554

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=94.58  E-value=0.043  Score=51.54  Aligned_cols=77  Identities=17%  Similarity=0.349  Sum_probs=50.1

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC------c-ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP------A-ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p------~-~D~v~~~  210 (301)
                      ..+..+|||+|||+|             +.+|. +.+++.+++      .++++|+.+|+.+.++      . .|+|++.
T Consensus       290 ~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       290 LQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             cCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence            455679999999996             56787 778777664      3689999999864322      1 3877742


Q ss_pred             hhhccCChHH-HHHHHHHHHHhCCCCCEEEE
Q 043063          211 WVLTTWTDDE-CKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       211 ~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli  240 (301)
                           -|... ...+|+.+. .++|++.+++
T Consensus       370 -----PPr~G~~~~~l~~l~-~l~~~~ivyv  394 (431)
T TIGR00479       370 -----PPRKGCAAEVLRTII-ELKPERIVYV  394 (431)
T ss_pred             -----cCCCCCCHHHHHHHH-hcCCCEEEEE
Confidence                 22211 235666555 3788765554

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria

Probab=94.55  E-value=0.02  Score=38.55  Aligned_cols=53  Identities=17%  Similarity=0.184  Sum_probs=36.8

Q ss_pred             CCCccccccccccccC------CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            1 MEDNECRDGGKKGRLA------NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         1 ~~~~~a~~lglf~~L~------~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |+.-|.-...|++.|.      +-|-|+.|||+.+|++   .+..+.+.|++|...|+|.+.
T Consensus         1 M~~LT~rQ~~vL~~I~~~~~~~G~~Pt~rEIa~~~g~~---S~~tv~~~L~~Le~kG~I~r~   59 (65)
T PF01726_consen    1 MKELTERQKEVLEFIREYIEENGYPPTVREIAEALGLK---STSTVQRHLKALERKGYIRRD   59 (65)
T ss_dssp             -----HHHHHHHHHHHHHHHHHSS---HHHHHHHHTSS---SHHHHHHHHHHHHHTTSEEEG
T ss_pred             CCCCCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCcCccCC
Confidence            3344444555666664      2256999999999994   589999999999999999988

The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.

>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator)

Probab=94.54  E-value=0.049  Score=42.12  Aligned_cols=49  Identities=29%  Similarity=0.373  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      ++.|.++||+.+++    ++..++++|+.|...|++...+  +.+|.|.++...+
T Consensus        24 ~~~s~~eia~~~~i----~~~~v~~il~~L~~~gli~~~~--g~~ggy~l~~~~~   72 (132)
T TIGR00738        24 GPVSVKEIAERQGI----SRSYLEKILRTLRRAGLVESVR--GPGGGYRLARPPE   72 (132)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecc--CCCCCccCCCCHH
Confidence            48999999999999    7999999999999999998752  1345788876443

This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=94.49  E-value=0.042  Score=49.34  Aligned_cols=50  Identities=16%  Similarity=0.222  Sum_probs=36.9

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC--C--cccEeeHh
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI--P--AADAIFMK  210 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~--p--~~D~v~~~  210 (301)
                      ..+|||+|||+|             +.+|. +.+++.+++      .++++|+.+|+.+..  +  ..|+|++.
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            479999999996             46787 777776653      257999999986532  1  24888765

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.49  E-value=0.031  Score=44.08  Aligned_cols=40  Identities=35%  Similarity=0.548  Sum_probs=36.9

Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .|+|++.|++.|+.-++-...|+.+++.|+|||+|-|.-+
T Consensus        48 ~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP   87 (185)
T COG4627          48 VDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP   87 (185)
T ss_pred             hHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence            5999999999999999999999999999999999887654

>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR

Probab=94.40  E-value=0.04  Score=46.16  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=47.5

Q ss_pred             ccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccc--c-c-CCCeEecChhchhhh
Q 043063           10 GKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHRE--F-G-GERKYSLTEIGKSLV   75 (301)
Q Consensus        10 glf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~--~-~-~~~~y~~t~~s~~l~   75 (301)
                      .|+..|. .++.|..+||+.+|+    ++..+++.|+.|...|+|++...  + + ..-.|++|+.+..+.
T Consensus         5 ~IL~~L~~~~~~t~~eLA~~lgi----s~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~~G~~~~   71 (203)
T TIGR02702         5 DILSYLLKQGQATAAALAEALAI----SPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSRQGREQF   71 (203)
T ss_pred             HHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECcchhhhc
Confidence            4566664 488999999999999    89999999999999999987621  1 1 112378898876544

All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.

>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR

Probab=94.36  E-value=0.038  Score=41.90  Aligned_cols=65  Identities=20%  Similarity=0.136  Sum_probs=50.0

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~   76 (301)
                      +..++..|.. ++.|..+||+.+++    ++..+.+.++-|...|+|.+.+...  ..-.|.+|+.++.+..
T Consensus        30 q~~iL~~l~~~~~~t~~ela~~~~~----~~~tvs~~l~~Le~~GlI~r~~~~~D~R~~~v~LT~~G~~~~~   97 (118)
T TIGR02337        30 QWRILRILAEQGSMEFTQLANQACI----LRPSLTGILARLERDGLVTRLKASNDQRRVYISLTPKGQALYA   97 (118)
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHH
Confidence            3446666654 78999999999999    7889999999999999999864210  1126899998876654

This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=94.34  E-value=0.079  Score=47.69  Aligned_cols=80  Identities=20%  Similarity=0.362  Sum_probs=59.3

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCccCCc----cc
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKSIPA----AD  205 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~~p~----~D  205 (301)
                      ++..++|-+|||-|               +..|+ |.|++-++.             .+|++++..|.|+....    .|
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            46789999999996               45688 999988763             37999999999876332    26


Q ss_pred             EeeHhhhhccCChHH--------HHHHHHHHHHhCCCCCEEEEecc
Q 043063          206 AIFMKWVLTTWTDDE--------CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~--------~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +++.     +++|+.        ...+-+-+++.|+++|.+++.-.
T Consensus       368 ~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQag  408 (508)
T COG4262         368 VVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAG  408 (508)
T ss_pred             EEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecC
Confidence            5543     455543        34567778889999999888754

>COG2345 Predicted transcriptional regulator [Transcription]

Probab=94.25  E-value=0.052  Score=45.62  Aligned_cols=59  Identities=27%  Similarity=0.349  Sum_probs=46.4

Q ss_pred             cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC----eEecChhchh
Q 043063           11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER----KYSLTEIGKS   73 (301)
Q Consensus        11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~s~~   73 (301)
                      |...|. .||+|+.|||+++|+    ++..+++.|..|++.|+++.....+.-|    .|++|..+..
T Consensus        16 il~lL~~~g~~sa~elA~~Lgi----s~~avR~HL~~Le~~Glv~~~~~~~g~GRP~~~y~Lt~~g~~   79 (218)
T COG2345          16 ILELLKKSGPVSADELAEELGI----SPMAVRRHLDDLEAEGLVEVERQQGGRGRPAKLYRLTEKGRE   79 (218)
T ss_pred             HHHHHhccCCccHHHHHHHhCC----CHHHHHHHHHHHHhCcceeeeeccCCCCCCceeeeecccchh
Confidence            445565 499999999999999    7999999999999999998653211112    5999998765

>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed

Probab=94.18  E-value=0.042  Score=43.84  Aligned_cols=48  Identities=19%  Similarity=0.114  Sum_probs=41.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.|.++||+..++    ++..|+++|..|...|+|...+  |.+|.|+++.-.
T Consensus        23 ~~~s~~eIA~~~~i----s~~~L~kIl~~L~~aGlv~S~r--G~~GGy~La~~p   70 (153)
T PRK11920         23 KLSRIPEIARAYGV----SELFLFKILQPLVEAGLVETVR--GRNGGVRLGRPA   70 (153)
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CCCCCeeecCCH
Confidence            56899999999999    7999999999999999999885  346789988644

>PRK11050 manganese transport regulator MntR; Provisional

Probab=94.10  E-value=0.058  Score=43.01  Aligned_cols=55  Identities=20%  Similarity=0.231  Sum_probs=45.5

Q ss_pred             cccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           13 GRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        13 ~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      ..+.. ++.+..+||+.+++    ++..+.+.++.|...|+|.+..    ...+.+|+.+..+.
T Consensus        44 ~~l~~~~~~t~~eLA~~l~i----s~stVsr~l~~Le~~GlI~r~~----~~~v~LT~~G~~l~   99 (152)
T PRK11050         44 DLIAEVGEARQVDIAARLGV----SQPTVAKMLKRLARDGLVEMRP----YRGVFLTPEGEKLA   99 (152)
T ss_pred             HHHHhcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEec----CCceEECchHHHHH
Confidence            34443 78999999999999    7899999999999999999862    45788888876654

>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]

Probab=94.05  E-value=0.07  Score=42.58  Aligned_cols=51  Identities=18%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .|+++..+||+.+++    .|..+...++-|...|+++..+    .+.+.+|+.++...
T Consensus        22 ~~~~~~~diA~~L~V----sp~sVt~ml~rL~~~GlV~~~~----y~gi~LT~~G~~~a   72 (154)
T COG1321          22 KGFARTKDIAERLKV----SPPSVTEMLKRLERLGLVEYEP----YGGVTLTEKGREKA   72 (154)
T ss_pred             cCcccHHHHHHHhCC----CcHHHHHHHHHHHHCCCeEEec----CCCeEEChhhHHHH
Confidence            488999999999999    7889999999999999999983    78899999886544

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.86  E-value=0.058  Score=43.81  Aligned_cols=83  Identities=11%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             cceEEeecCCceee----------------eeh-hHHHhhCCC-----CCceeEEeCCCCccC-Cc-ccEeeHhhhhccC
Q 043063          161 VKRLVDVGGSAGIN----------------FDL-PEVVAEAPS-----IPGVTHIGGDMFKSI-PA-ADAIFMKWVLTTW  216 (301)
Q Consensus       161 ~~~vlDvGgG~g~~----------------~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~-p~-~D~v~~~~vlh~~  216 (301)
                      ...+++||||+|++                -|+ |+.++...+     .-++..+..|+..-+ ++ .|+++++--.---
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNPPYVPT  123 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECCCcCcC
Confidence            57899999999742                276 555544221     234666777776542 22 3666554322111


Q ss_pred             Ch-------------------HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          217 TD-------------------DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       217 ~d-------------------~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ++                   +-..++|..+-..|.|.|.+++.-.
T Consensus       124 ~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~  169 (209)
T KOG3191|consen  124 SDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVAL  169 (209)
T ss_pred             CcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeeh
Confidence            11                   1133555556666666676665543

>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3)

Probab=93.82  E-value=0.016  Score=42.98  Aligned_cols=86  Identities=22%  Similarity=0.308  Sum_probs=42.7

Q ss_pred             cEeeHhhh---hc-cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHH
Q 043063          205 DAIFMKWV---LT-TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQE  280 (301)
Q Consensus       205 D~v~~~~v---lh-~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e  280 (301)
                      |+|+|-.|   +| +|.|+-..++++++++.|+|||.+++ |+-.=    .++..  ..-..-.+..  ....-....++
T Consensus         3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lil-EpQ~w----~sY~~--~~~~~~~~~~--n~~~i~lrP~~   73 (110)
T PF06859_consen    3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILIL-EPQPW----KSYKK--AKRLSEEIRE--NYKSIKLRPDQ   73 (110)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEE-E---H----HHHHT--TTTS-HHHHH--HHHH----GGG
T ss_pred             cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEE-eCCCc----HHHHH--HhhhhHHHHh--HHhceEEChHH
Confidence            56655444   34 68899999999999999999997764 43110    01100  0000000000  11122234567


Q ss_pred             HHHHHHh--CCCCceEEEEcc
Q 043063          281 FKQLGFS--AGFPHLRLYRVL  299 (301)
Q Consensus       281 ~~~~l~~--aGf~~~~~~~~~  299 (301)
                      +.++|.+  .||...+...++
T Consensus        74 F~~~L~~~evGF~~~e~~~~~   94 (110)
T PF06859_consen   74 FEDYLLEPEVGFSSVEELGVP   94 (110)
T ss_dssp             HHHHHTSTTT---EEEEE---
T ss_pred             HHHHHHhcccceEEEEEcccC
Confidence            8888877  699988766553

Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.

>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism

Probab=93.72  E-value=0.056  Score=35.34  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=37.7

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |.+.|.. +..|+++||+.+|+    .+.-++|=|..|...|++.+.
T Consensus         5 Il~~l~~~~~~s~~ela~~~~V----S~~TiRRDl~~L~~~g~i~r~   47 (57)
T PF08220_consen    5 ILELLKEKGKVSVKELAEEFGV----SEMTIRRDLNKLEKQGLIKRT   47 (57)
T ss_pred             HHHHHHHcCCEEHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            5566764 88999999999999    688999999999999999998

This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular

>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors

Probab=93.72  E-value=0.068  Score=36.30  Aligned_cols=58  Identities=26%  Similarity=0.280  Sum_probs=44.8

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .+..|+..|..++.+..+|++.+++    +...+.+.|+.|.+.|++...... ....|++++
T Consensus         8 ~~~~il~~l~~~~~~~~ei~~~~~i----~~~~i~~~l~~L~~~g~i~~~~~~-~~~~~~~~~   65 (78)
T cd00090           8 TRLRILRLLLEGPLTVSELAERLGL----SQSTVSRHLKKLEEAGLVESRREG-RRVYYSLTD   65 (78)
T ss_pred             HHHHHHHHHHHCCcCHHHHHHHHCc----CHhHHHHHHHHHHHCCCeEEEEec-cEEEEEeCC
Confidence            3455666666656999999999999    788999999999999999976311 224677775

ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=93.60  E-value=0.094  Score=44.68  Aligned_cols=80  Identities=19%  Similarity=0.382  Sum_probs=50.7

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCC----C--CCceeEEeCCCCcc----CCcc--cEeeHhhhh
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAP----S--IPGVTHIGGDMFKS----IPAA--DAIFMKWVL  213 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~----~--~~ri~~~~gd~~~~----~p~~--D~v~~~~vl  213 (301)
                      ..+||||||.|               ++++. ..++..+.    +  ..++.++.+|..+-    .|.+  |-|++.+-=
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPD  129 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPD  129 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCC
Confidence            58999999997               56776 33333332    1  24899999998653    3332  433332211


Q ss_pred             ccCChHH-------HHHHHHHHHHhCCCCCEEEEec
Q 043063          214 TTWTDDE-------CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       214 h~~~d~~-------~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       .|+...       ...+|+.+.+.|+|||.|.+..
T Consensus       130 -PWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT  164 (227)
T COG0220         130 -PWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT  164 (227)
T ss_pred             -CCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence             233221       2468999999999999987654

>TIGR00095 RNA methyltransferase, RsmD family

Probab=93.56  E-value=0.071  Score=44.16  Aligned_cols=80  Identities=13%  Similarity=0.142  Sum_probs=46.1

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-----Cc--ccEeeHhh
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-----PA--ADAIFMKW  211 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-----p~--~D~v~~~~  211 (301)
                      ..++||++||+|              +.+|. +..++.+++       .++++++.+|.++.+     ..  .|+|++-=
T Consensus        50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP  129 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP  129 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence            478999999995              35576 555544432       258999999996531     11  36666543


Q ss_pred             hhccCChHHHHHHHHHHHH--hCCCCCEEEEeccc
Q 043063          212 VLTTWTDDECKLIMENCYK--AIPAGGKLIACEPV  244 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~--aL~pgg~lli~e~~  244 (301)
                      -...   .....+++.+.+  .|+++| ++|+|..
T Consensus       130 Py~~---~~~~~~l~~l~~~~~l~~~~-iiv~E~~  160 (189)
T TIGR00095       130 PFFN---GALQALLELCENNWILEDTV-LIVVEED  160 (189)
T ss_pred             CCCC---CcHHHHHHHHHHCCCCCCCe-EEEEEec
Confidence            3321   122344544433  466666 4555543

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.50  E-value=0.18  Score=42.06  Aligned_cols=94  Identities=21%  Similarity=0.334  Sum_probs=60.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc-C--------Cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS-I--------PA  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~--------p~  203 (301)
                      .++.+.+.-+++..+|+|+|+..|                +.+|+.++-.    ...|.++.+|++.+ .        +.
T Consensus        34 ~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~~~~~~~l~~~l~~  109 (205)
T COG0293          34 LELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITDEDTLEKLLEALGG  109 (205)
T ss_pred             HHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccCccHHHHHHHHcCC
Confidence            345555544678899999999884                4667755443    34599999999865 2        22


Q ss_pred             --ccEeeH---hhhhccCC------hHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          204 --ADAIFM---KWVLTTWT------DDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       204 --~D~v~~---~~vlh~~~------d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                        .|+|+.   .++-.+++      -.-+...+.-+...|+|||.+++-.+--.
T Consensus       110 ~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~  163 (205)
T COG0293         110 APVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE  163 (205)
T ss_pred             CCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence              277762   11111222      12244567777789999999998877544

>PRK11014 transcriptional repressor NsrR; Provisional

Probab=93.47  E-value=0.069  Score=41.94  Aligned_cols=46  Identities=17%  Similarity=0.195  Sum_probs=39.0

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .+.+..+||+..|+    ++..+++.|..|...|++...+  |.+|.|.+..
T Consensus        24 ~~~s~~~ia~~~~i----s~~~vrk~l~~L~~~Glv~s~~--G~~GG~~l~~   69 (141)
T PRK11014         24 RMTSISEVTEVYGV----SRNHMVKIINQLSRAGYVTAVR--GKNGGIRLGK   69 (141)
T ss_pred             CccCHHHHHHHHCc----CHHHHHHHHHHHHhCCEEEEec--CCCCCeeecC
Confidence            36789999999999    7999999999999999999874  2345788865

>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B

Probab=93.31  E-value=0.022  Score=37.67  Aligned_cols=45  Identities=22%  Similarity=0.245  Sum_probs=36.2

Q ss_pred             cccccccCC-CC--CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            9 GGKKGRLAN-TP--LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         9 lglf~~L~~-g~--~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      ..++-.|.. ++  .|..+||+.+++    ++..+.+.++.|...|+|++..
T Consensus         8 ~~vL~~l~~~~~~~~t~~~la~~l~~----~~~~vs~~v~~L~~~Glv~r~~   55 (62)
T PF12802_consen    8 FRVLMALARHPGEELTQSELAERLGI----SKSTVSRIVKRLEKKGLVERER   55 (62)
T ss_dssp             HHHHHHHHHSTTSGEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC
Confidence            334445543 33  799999999999    7999999999999999999874

...

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=93.29  E-value=0.29  Score=41.04  Aligned_cols=100  Identities=19%  Similarity=0.254  Sum_probs=62.9

Q ss_pred             EEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---ccEeeHhhhhccCC
Q 043063          164 LVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA---ADAIFMKWVLTTWT  217 (301)
Q Consensus       164 vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~---~D~v~~~~vlh~~~  217 (301)
                      |.||||-+|               +..|+ |..++.|++       .++|++..+|-++.++.   .|+|++..+    .
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G   76 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G   76 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence            689999994               45587 666655543       48999999998887443   578877764    4


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                      -.-..+||.+....+++..+++++-.                                .....+++||.+.||.+.+..-
T Consensus        77 G~lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~l  124 (205)
T PF04816_consen   77 GELIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDEDL  124 (205)
T ss_dssp             HHHHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeEE
Confidence            55577888887766655445544211                                0356788888999988877665


Q ss_pred             cc
Q 043063          298 VL  299 (301)
Q Consensus       298 ~~  299 (301)
                      +.
T Consensus       125 v~  126 (205)
T PF04816_consen  125 VE  126 (205)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=93.29  E-value=0.26  Score=41.83  Aligned_cols=112  Identities=20%  Similarity=0.213  Sum_probs=72.8

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCcc---CCc--ccEeeH
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKS---IPA--ADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~---~p~--~D~v~~  209 (301)
                      -+...+|||.=.|-|              +-++- |.|++.|.-        ..+|+++.||.++-   +++  .|+|  
T Consensus       132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaI--  209 (287)
T COG2521         132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAI--  209 (287)
T ss_pred             cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceE--
Confidence            345789999987774              22343 778777653        24789999999864   454  2764  


Q ss_pred             hhhhccCCh------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063          210 KWVLTTWTD------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       210 ~~vlh~~~d------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                         +|+=|.      -....+-+++++.|+|||+++=.-  -..    +.   .....|              -.....+
T Consensus       210 ---iHDPPRfS~AgeLYseefY~El~RiLkrgGrlFHYv--G~P----g~---ryrG~d--------------~~~gVa~  263 (287)
T COG2521         210 ---IHDPPRFSLAGELYSEEFYRELYRILKRGGRLFHYV--GNP----GK---RYRGLD--------------LPKGVAE  263 (287)
T ss_pred             ---eeCCCccchhhhHhHHHHHHHHHHHcCcCCcEEEEe--CCC----Cc---ccccCC--------------hhHHHHH
Confidence               455332      235578899999999999987322  211    10   111233              2456778


Q ss_pred             HHHhCCCCceEEEE
Q 043063          284 LGFSAGFPHLRLYR  297 (301)
Q Consensus       284 ~l~~aGf~~~~~~~  297 (301)
                      .|+++||.+++...
T Consensus       264 RLr~vGF~~v~~~~  277 (287)
T COG2521         264 RLRRVGFEVVKKVR  277 (287)
T ss_pred             HHHhcCceeeeeeh
Confidence            89999999877654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=93.19  E-value=0.28  Score=40.48  Aligned_cols=86  Identities=17%  Similarity=0.254  Sum_probs=55.8

Q ss_pred             CCCcceEEeecCCceee--------------eeh-hHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhhccCC
Q 043063          158 FKGVKRLVDVGGSAGIN--------------FDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVLTTWT  217 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g~~--------------~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~  217 (301)
                      +-..++|||.|.|+|++              -|. |...+.++-     .-.|.+...|....-|..|+++++.++++.+
T Consensus        77 tVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagDlfy~~~  156 (218)
T COG3897          77 TVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGDLFYNHT  156 (218)
T ss_pred             ccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeeceecCch
Confidence            44578999999999631              133 555544432     1357777777655333469999999997665


Q ss_pred             hHHHHHHHHHHHHhCCC-CCEEEEeccccC
Q 043063          218 DDECKLIMENCYKAIPA-GGKLIACEPVLP  246 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~p-gg~lli~e~~~~  246 (301)
                      .  +.+++. +...|.. |-.++|.|+-.+
T Consensus       157 ~--a~~l~~-~~~~l~~~g~~vlvgdp~R~  183 (218)
T COG3897         157 E--ADRLIP-WKDRLAEAGAAVLVGDPGRA  183 (218)
T ss_pred             H--HHHHHH-HHHHHHhCCCEEEEeCCCCC
Confidence            4  457777 6666655 456777776554

>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function

Probab=93.15  E-value=0.074  Score=38.35  Aligned_cols=46  Identities=22%  Similarity=0.197  Sum_probs=40.5

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .++.|..+|.. ||=...-+|..+++    +...++..|+.|..+|+|++.
T Consensus         8 l~~~IL~hl~~~~~Dy~k~ia~~l~~----~~~~v~~~l~~Le~~GLler~   54 (92)
T PF10007_consen    8 LDLKILQHLKKAGPDYAKSIARRLKI----PLEEVREALEKLEEMGLLERV   54 (92)
T ss_pred             hHHHHHHHHHHHCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            45667777775 78888889999999    899999999999999999998

>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial

Probab=93.12  E-value=0.11  Score=40.14  Aligned_cols=46  Identities=30%  Similarity=0.483  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      ++.|+.+||+++++    ++..+.+.|+.|...|++...+  +..+.|.+..
T Consensus        24 ~~~s~~eia~~l~i----s~~~v~~~l~~L~~~Gli~~~~--g~~ggy~l~~   69 (130)
T TIGR02944        24 QPYSAAEIAEQTGL----NAPTVSKILKQLSLAGIVTSKR--GVEGGYTLAR   69 (130)
T ss_pred             CCccHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEecC--CCCCChhhcC
Confidence            57899999999999    7999999999999999998652  1245677754

The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.

>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance

Probab=93.05  E-value=0.024  Score=37.10  Aligned_cols=45  Identities=16%  Similarity=0.197  Sum_probs=37.5

Q ss_pred             cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      +.++..|.+ ++.|..+||+.+++    ++..+.++++.|...|++++..
T Consensus         6 ~~iL~~l~~~~~~~~~~la~~~~~----~~~~~t~~i~~L~~~g~I~r~~   51 (59)
T PF01047_consen    6 FRILRILYENGGITQSELAEKLGI----SRSTVTRIIKRLEKKGLIERER   51 (59)
T ss_dssp             HHHHHHHHHHSSEEHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecc
Confidence            344555554 78999999999999    8999999999999999999874

This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....

>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element

Probab=93.02  E-value=0.17  Score=36.67  Aligned_cols=46  Identities=26%  Similarity=0.374  Sum_probs=40.1

Q ss_pred             HHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           22 ASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        22 ~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      ..+||+.+++    ++..+.+.++.|...|+|.+.+    +..|.+|+.+..+.
T Consensus         2 ~~ela~~l~i----s~stvs~~l~~L~~~glI~r~~----~~~~~lT~~g~~~~   47 (96)
T smart00529        2 TSEIAERLNV----SPPTVTQMLKKLEKDGLVEYEP----YRGITLTEKGRRLA   47 (96)
T ss_pred             HHHHHHHhCC----ChHHHHHHHHHHHHCCCEEEcC----CCceEechhHHHHH
Confidence            4689999999    7889999999999999999983    46899999886654

iron dependent repressor

>COG4190 Predicted transcriptional regulator [Transcription]

Probab=92.92  E-value=0.075  Score=40.49  Aligned_cols=45  Identities=20%  Similarity=0.242  Sum_probs=40.7

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+.|++.|++ +|.|..|+|+..|-    +..++.|-|+.|.-.|++...
T Consensus        66 nleLl~~Ia~~~P~Si~ElAe~vgR----dv~nvhr~Ls~l~~~GlI~fe  111 (144)
T COG4190          66 NLELLELIAQEEPASINELAELVGR----DVKNVHRTLSTLADLGLIFFE  111 (144)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHhCc----chHHHHHHHHHHHhcCeEEEe
Confidence            3557778876 89999999999999    899999999999999999987

>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor

Probab=92.87  E-value=0.077  Score=33.46  Aligned_cols=42  Identities=17%  Similarity=0.160  Sum_probs=36.0

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      +++.|.+ ++.|..+|++.+++    .+..+.+.|+.|...|++.+.
T Consensus         5 il~~l~~~~~~s~~~l~~~l~~----s~~tv~~~l~~L~~~g~i~~~   47 (53)
T smart00420        5 ILELLAQQGKVSVEELAELLGV----SEMTIRRDLNKLEEQGLLTRV   47 (53)
T ss_pred             HHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            3444543 67899999999999    799999999999999999987

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=92.73  E-value=0.2  Score=42.75  Aligned_cols=87  Identities=20%  Similarity=0.387  Sum_probs=60.5

Q ss_pred             CCcceEEeecCCce-------------------eeeehh-HHHhh-----CCCCCce--eEEeCCCCcc---CCc-c--c
Q 043063          159 KGVKRLVDVGGSAG-------------------INFDLP-EVVAE-----APSIPGV--THIGGDMFKS---IPA-A--D  205 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------------~~~Dlp-~v~~~-----a~~~~ri--~~~~gd~~~~---~p~-~--D  205 (301)
                      .+..+++|+|.|+.                   +-+|.. .++..     .++.+.+  .-+++|+...   +|. +  =
T Consensus        77 ~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl  156 (321)
T COG4301          77 TGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRL  156 (321)
T ss_pred             hCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEE
Confidence            35789999999993                   345653 22222     1223444  4466787654   454 2  5


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEE-ecccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIA-CEPVL  245 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli-~e~~~  245 (301)
                      .+++...|.++++++|..+|.+++.+|+||-.+++ .|.+.
T Consensus       157 ~~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGvDl~k  197 (321)
T COG4301         157 FVFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGVDLRK  197 (321)
T ss_pred             EEEecccccCCChHHHHHHHHHHHhcCCCcceEEEeccccC
Confidence            77888999999999999999999999999976665 34443

>PHA02943 hypothetical protein; Provisional

Probab=92.59  E-value=0.12  Score=40.45  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=43.4

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .|.+.|..|..|..|||+++|+    ....++..|+.|...|.+.+.+ .|.-..|++++
T Consensus        15 eILE~Lk~G~~TtseIAkaLGl----S~~qa~~~LyvLErEG~VkrV~-~G~~tyw~l~~   69 (165)
T PHA02943         15 KTLRLLADGCKTTSRIANKLGV----SHSMARNALYQLAKEGMVLKVE-IGRAAIWCLDE   69 (165)
T ss_pred             HHHHHHhcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCceEEEe-ecceEEEEECh
Confidence            4677786789999999999999    6889999999999999999873 11122455555

>PRK11512 DNA-binding transcriptional repressor MarR; Provisional

Probab=92.57  E-value=0.1  Score=41.11  Aligned_cols=62  Identities=15%  Similarity=0.119  Sum_probs=47.2

Q ss_pred             cccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            9 GGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ..++..|. .++.|..+||+.+++    ++..+.++++.|+..|+|.+.... .+.   ...+|+.++.+.
T Consensus        43 ~~vL~~l~~~~~~t~~eLa~~l~i----~~~tvsr~l~~Le~~GlI~R~~~~-~DrR~~~l~LT~~G~~~~  108 (144)
T PRK11512         43 FKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNP-NDKRGVLVKLTTSGAAIC  108 (144)
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCc-ccCCeeEeEEChhHHHHH
Confidence            34455565 378999999999999    899999999999999999987421 111   367777776554

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=92.51  E-value=0.2  Score=41.89  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=57.2

Q ss_pred             CCCcceEEeecCCcee--------------eeeh-hHHHhhCCC-----CCceeEEeCCCC---ccCCc--ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGSAGI--------------NFDL-PEVVAEAPS-----IPGVTHIGGDMF---KSIPA--ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g~--------------~~Dl-p~v~~~a~~-----~~ri~~~~gd~~---~~~p~--~D~v~~~~v  212 (301)
                      +++..|||.||-|-|+              +++- |.|.+..+.     .++|....|-..   ..+|.  .|-|+.--.
T Consensus        99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy  178 (271)
T KOG1709|consen   99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTY  178 (271)
T ss_pred             hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeech
Confidence            4677899999999973              4554 778877654     467877777433   23554  265443221


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      - . .-++...+-+.+.+.|||+|++-.+.-..
T Consensus       179 ~-e-~yEdl~~~hqh~~rLLkP~gv~SyfNg~~  209 (271)
T KOG1709|consen  179 S-E-LYEDLRHFHQHVVRLLKPEGVFSYFNGLG  209 (271)
T ss_pred             h-h-HHHHHHHHHHHHhhhcCCCceEEEecCcc
Confidence            1 1 12456788889999999999887776544

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=92.40  E-value=0.088  Score=48.49  Aligned_cols=76  Identities=14%  Similarity=0.114  Sum_probs=46.9

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC----cccEeeHhhhhccC
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP----AADAIFMKWVLTTW  216 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p----~~D~v~~~~vlh~~  216 (301)
                      ..+|||++||+|             +.+|. |..++.+++      .++++|+.+|+.+..+    ..|+|++-=---..
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~G~  313 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRRGI  313 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCCCC
Confidence            468999999996             46786 667766553      2579999999865322    24887765221011


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                          ..++++.+. .++|++.++|.
T Consensus       314 ----~~~~l~~l~-~~~p~~ivyvs  333 (374)
T TIGR02085       314 ----GKELCDYLS-QMAPKFILYSS  333 (374)
T ss_pred             ----cHHHHHHHH-hcCCCeEEEEE
Confidence                134455554 36787655543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein

Probab=92.26  E-value=0.11  Score=43.47  Aligned_cols=58  Identities=22%  Similarity=0.299  Sum_probs=46.4

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.|+.|...|++.+.+.  ....|.+|+.+
T Consensus       145 ~~~IL~~l~~~g~~s~~eia~~l~i----s~stv~r~L~~Le~~GlI~r~~~--r~~~~~lT~~G  203 (203)
T TIGR01884       145 ELKVLEVLKAEGEKSVKNIAKKLGK----SLSTISRHLRELEKKGLVEQKGR--KGKRYSLTKLG  203 (203)
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEcC--CccEEEeCCCC
Confidence            4556677765 78899999999999    78899999999999999998831  13468887653

Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=92.10  E-value=0.56  Score=44.51  Aligned_cols=89  Identities=20%  Similarity=0.332  Sum_probs=55.5

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEee--
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIF--  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~--  208 (301)
                      .....+|||+.+|.|                +..|. +..+...++      ..+|.+...|....   +|. .|.|+  
T Consensus       111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD  190 (470)
T PRK11933        111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD  190 (470)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence            456689999999885                23465 443333221      25677777775432   343 37777  


Q ss_pred             --Hh---------hhhccCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063          209 --MK---------WVLTTWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       209 --~~---------~vlh~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                        |+         .+...|+.++.       .+||+++.+.|+|||+|+-..+...
T Consensus       191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~  246 (470)
T PRK11933        191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLN  246 (470)
T ss_pred             CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCC
Confidence              44         22334554443       6899999999999998876665443

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=91.95  E-value=0.25  Score=42.86  Aligned_cols=61  Identities=25%  Similarity=0.489  Sum_probs=43.3

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCccc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAAD  205 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D  205 (301)
                      ...++..-+ .+....||+||.|+|             +.++. |.++++..+       ....+++.||++.- +|-.|
T Consensus        47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~fd  125 (315)
T KOG0820|consen   47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPRFD  125 (315)
T ss_pred             HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcccc
Confidence            445666664 778889999999997             33454 555555332       37899999999975 78777


Q ss_pred             EeeH
Q 043063          206 AIFM  209 (301)
Q Consensus       206 ~v~~  209 (301)
                      +++.
T Consensus       126 ~cVs  129 (315)
T KOG0820|consen  126 GCVS  129 (315)
T ss_pred             eeec
Confidence            6654

>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=91.58  E-value=0.066  Score=40.56  Aligned_cols=49  Identities=16%  Similarity=0.193  Sum_probs=43.8

Q ss_pred             ccccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            4 NECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         4 ~~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ++.+...|.+...+ |..|..++...+|+    +...+++.++.|++.|-|...
T Consensus        10 r~eLk~rIvElVRe~GRiTi~ql~~~TGa----sR~Tvk~~lreLVa~G~l~~~   59 (127)
T PF06163_consen   10 REELKARIVELVREHGRITIKQLVAKTGA----SRNTVKRYLRELVARGDLYRH   59 (127)
T ss_pred             HHHHHHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeC
Confidence            55667788888876 99999999999999    899999999999999999877

>COG1733 Predicted transcriptional regulators [Transcription]

Probab=91.55  E-value=0.26  Score=37.53  Aligned_cols=61  Identities=23%  Similarity=0.217  Sum_probs=47.8

Q ss_pred             cccccCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063           11 KKGRLANTPLSASQILTRIL-PSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      |.-.|..|+....||.+.++ +    .+.-|.+-|+.|...|++.+..-..  ..-.|++|+.++.|.
T Consensus        28 Il~~L~~g~~RF~eL~r~i~~I----s~k~Ls~~Lk~Le~~Glv~R~~~~~~PprveY~LT~~G~~L~   91 (120)
T COG1733          28 ILRDLFDGPKRFNELRRSIGGI----SPKMLSRRLKELEEDGLVERVVYPEEPPRVEYRLTEKGRDLL   91 (120)
T ss_pred             HHHHHhcCCCcHHHHHHHcccc----CHHHHHHHHHHHHHCCCEEeeecCCCCceeEEEEhhhHHHHH
Confidence            34455568999999999998 8    7999999999999999999874210  123599999887665

>PF07789 DUF1627: Protein of unknown function (DUF1627); InterPro: IPR012432 This is a group of sequences found in hypothetical proteins predicted to be expressed in a number of bacterial species

Probab=91.51  E-value=0.34  Score=37.72  Aligned_cols=45  Identities=11%  Similarity=0.214  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC--eEecC
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER--KYSLT   68 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t   68 (301)
                      +|++|++|||-..|+    ..+.+..-|-++++-|-|.+..   .+|  +|++.
T Consensus         4 ~Ga~T~eELA~~FGv----ttRkvaStLa~~ta~Grl~Rv~---q~gkfRy~iP   50 (155)
T PF07789_consen    4 EGAKTAEELAGKFGV----TTRKVASTLAMVTATGRLIRVN---QNGKFRYCIP   50 (155)
T ss_pred             cCcccHHHHHHHhCc----chhhhHHHHHHHHhcceeEEec---CCCceEEeCC
Confidence            499999999999999    7999999999999999999884   334  47764

The region in question is approximately 150 amino acid residues long.

>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators

Probab=91.43  E-value=0.38  Score=31.74  Aligned_cols=40  Identities=15%  Similarity=0.151  Sum_probs=33.5

Q ss_pred             CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063           20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL   67 (301)
Q Consensus        20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~   67 (301)
                      .|..+||..+++    +...+.+.|..|...|+|...    .+..|.+
T Consensus        26 ~~~~~la~~~~i----s~~~v~~~l~~L~~~G~i~~~----~~~~~~l   65 (66)
T cd07377          26 PSERELAEELGV----SRTTVREALRELEAEGLVERR----PGRGTFV   65 (66)
T ss_pred             CCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec----CCCeEEe
Confidence            369999999999    788999999999999999876    2445554

This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=91.42  E-value=0.63  Score=35.63  Aligned_cols=81  Identities=20%  Similarity=0.368  Sum_probs=53.1

Q ss_pred             EEeecCCcee---------------eeeh-hHHHhhCCCC---Cc---eeEEeCCCCc---cCCc---ccEeeHhhhhcc
Q 043063          164 LVDVGGSAGI---------------NFDL-PEVVAEAPSI---PG---VTHIGGDMFK---SIPA---ADAIFMKWVLTT  215 (301)
Q Consensus       164 vlDvGgG~g~---------------~~Dl-p~v~~~a~~~---~r---i~~~~gd~~~---~~p~---~D~v~~~~vlh~  215 (301)
                      ++|+|||+|.               ++|. +..+..+...   ..   +.+..+|...   ++..   .|++ .....++
T Consensus        52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeehh
Confidence            9999999973               1344 3333332211   11   6788888765   2333   4888 5555544


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      +.+  ...+++.+.+.++|+|.+++.+.....
T Consensus       131 ~~~--~~~~~~~~~~~l~~~g~~~~~~~~~~~  160 (257)
T COG0500         131 LLP--PAKALRELLRVLKPGGRLVLSDLLRDG  160 (257)
T ss_pred             cCC--HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence            444  568999999999999999988876553

>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family

Probab=91.41  E-value=0.19  Score=37.51  Aligned_cols=53  Identities=23%  Similarity=0.352  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.|..+||..+++    ++..+.++++.|+..|+|.+.+.. .+.   .+.+|+.+..+.
T Consensus        42 ~~~t~~eL~~~l~~----~~stvs~~i~~Le~kg~I~r~~~~-~D~R~~~i~lT~~G~~~~   97 (109)
T TIGR01889        42 GKLTLKEIIKEILI----KQSALVKIIKKLSKKGYLSKERSE-DDERKVIISINKEQRSKI   97 (109)
T ss_pred             CcCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeccCCc-ccCCeEEEEECHHHHHHH
Confidence            68999999999999    899999999999999999987432 122   366777776544

This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.

>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain

Probab=91.37  E-value=0.36  Score=35.11  Aligned_cols=44  Identities=7%  Similarity=0.005  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      .++|-.|||+.+|+    ++..+.+.|..|...|+|.+.+   .-+.++.|
T Consensus        46 ~~is~~eLa~~~g~----sr~tVsr~L~~Le~~GlI~r~~---~~~~~~~n   89 (95)
T TIGR01610        46 DRVTATVIAELTGL----SRTHVSDAIKSLARRRIIFRQG---MMGIVGVN   89 (95)
T ss_pred             CccCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeec---CCceeecC
Confidence            57899999999999    7889999999999999999872   23678776

This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.

>smart00344 HTH_ASNC helix_turn_helix ASNC type

Probab=91.28  E-value=0.11  Score=38.57  Aligned_cols=46  Identities=13%  Similarity=0.163  Sum_probs=40.5

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|+..|.. ++.|..+||+.+|+    ++..+.+.++.|...|++.+.
T Consensus         4 ~D~~il~~L~~~~~~~~~~la~~l~~----s~~tv~~~l~~L~~~g~i~~~   50 (108)
T smart00344        4 IDRKILEELQKDARISLAELAKKVGL----SPSTVHNRVKRLEEEGVIKGY   50 (108)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeece
Confidence            45677888875 78999999999999    799999999999999999854

AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=91.25  E-value=0.26  Score=47.27  Aligned_cols=82  Identities=16%  Similarity=0.286  Sum_probs=51.6

Q ss_pred             CcceEEeecCCce---------------eeeeh--hHHHhhCCC-----CCceeEEeCCCCc--c-CCcc--cEeeHhhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL--PEVVAEAPS-----IPGVTHIGGDMFK--S-IPAA--DAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl--p~v~~~a~~-----~~ri~~~~gd~~~--~-~p~~--D~v~~~~v  212 (301)
                      ....+||||||.|               +++|.  +.+....++     ..++.++.+|+..  . +|..  |-+++.+-
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP  426 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP  426 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence            3578999999996               56675  333322221     3678888887631  2 5543  55544332


Q ss_pred             hccCChHH-------HHHHHHHHHHhCCCCCEEEEec
Q 043063          213 LTTWTDDE-------CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       213 lh~~~d~~-------~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      = .|+...       ...+|+.+++.|+|||.|.+..
T Consensus       427 D-PWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T  462 (506)
T PRK01544        427 D-PWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS  462 (506)
T ss_pred             C-CCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence            1 243321       3478999999999999888654

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=91.24  E-value=0.44  Score=41.34  Aligned_cols=78  Identities=13%  Similarity=0.222  Sum_probs=47.7

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhC----CCCCceeEEeCCCCcc-CCc--ccE
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEA----PSIPGVTHIGGDMFKS-IPA--ADA  206 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a----~~~~ri~~~~gd~~~~-~p~--~D~  206 (301)
                      .+.+++..+ .....+|++||+|.|             +.+++ +..++.-    ...++++++.+|+.+- +|+  .-.
T Consensus        19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~   97 (259)
T COG0030          19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY   97 (259)
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence            355666664 666789999999997             45554 3333332    2358999999999875 664  223


Q ss_pred             eeHhhhhccCChHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIME  226 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~  226 (301)
                      .+.++.-++.+-+-..++|+
T Consensus        98 ~vVaNlPY~Isspii~kll~  117 (259)
T COG0030          98 KVVANLPYNISSPILFKLLE  117 (259)
T ss_pred             EEEEcCCCcccHHHHHHHHh
Confidence            34445555555443333333

>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor

Probab=91.10  E-value=0.44  Score=30.75  Aligned_cols=34  Identities=15%  Similarity=0.225  Sum_probs=31.3

Q ss_pred             CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           19 PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        19 ~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+ |..+||+.+|+    ....+++.|+.|...|++...
T Consensus        19 ~l~s~~~la~~~~v----s~~tv~~~l~~L~~~g~i~~~   53 (60)
T smart00345       19 KLPSERELAAQLGV----SRTTVREALSRLEAEGLVQRR   53 (60)
T ss_pred             cCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            45 89999999999    788999999999999999877

>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=91.07  E-value=0.26  Score=28.03  Aligned_cols=31  Identities=26%  Similarity=0.433  Sum_probs=25.7

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcce
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVF   53 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l   53 (301)
                      |+|-.|||..+|+    .+.-+.|.|..|...|++
T Consensus         2 ~mtr~diA~~lG~----t~ETVSR~l~~l~~~glI   32 (32)
T PF00325_consen    2 PMTRQDIADYLGL----TRETVSRILKKLERQGLI   32 (32)
T ss_dssp             E--HHHHHHHHTS-----HHHHHHHHHHHHHTTSE
T ss_pred             CcCHHHHHHHhCC----cHHHHHHHHHHHHHcCCC
Confidence            5788999999999    788999999999998875

These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....

>COG1497 Predicted transcriptional regulator [Transcription]

Probab=91.05  E-value=0.23  Score=42.08  Aligned_cols=94  Identities=12%  Similarity=0.213  Sum_probs=64.3

Q ss_pred             cccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch-hhhcCCCCCCh
Q 043063            7 RDGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK-SLVTDAEGQSY   83 (301)
Q Consensus         7 ~~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~-~l~~~~~~~~~   83 (301)
                      .+..|+..|.  ++...-.|||+.+|+    .+.++...++-|+..|++++.    ..++|..|..+. .+..+-+  .+
T Consensus        11 t~fqIL~ei~~~qp~v~q~eIA~~lgi----T~QaVsehiK~Lv~eG~i~~~----gR~~Y~iTkkG~e~l~~~~~--dl   80 (260)
T COG1497          11 TRFQILSEIAVRQPRVKQKEIAKKLGI----TLQAVSEHIKELVKEGLIEKE----GRGEYEITKKGAEWLLEQLS--DL   80 (260)
T ss_pred             hHHHHHHHHHHhCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhccceeec----CCeeEEEehhHHHHHHHHHH--HH
Confidence            3444445554  355788999999999    799999999999999999997    477999999985 4443322  35


Q ss_pred             hHHHHhhcch-hHHhhhhhHHH-hhcCCC
Q 043063           84 APYVLQHHQD-ALMSAWPLVHE-AILDPT  110 (301)
Q Consensus        84 ~~~~~~~~~~-~~~~~~~~l~~-~l~~g~  110 (301)
                      +.++...... .+...|..+++ -++.|.
T Consensus        81 r~f~~ev~~~l~~~~vw~AIA~edI~~Gd  109 (260)
T COG1497          81 RRFSEEVELVLDYVMVWTAIAKEDIKEGD  109 (260)
T ss_pred             HHHHHHHHHHHhhHHHHHHhhHhhhccCC
Confidence            5555443111 13356776654 356666

>PRK06266 transcription initiation factor E subunit alpha; Validated

Probab=90.97  E-value=0.17  Score=41.39  Aligned_cols=43  Identities=12%  Similarity=0.060  Sum_probs=38.7

Q ss_pred             ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .|+++|.. |++|.++||..+|+    +...++++|..|...|++...
T Consensus        26 ~Vl~~L~~~g~~tdeeLA~~Lgi----~~~~VRk~L~~L~e~gLv~~~   69 (178)
T PRK06266         26 EVLKALIKKGEVTDEEIAEQTGI----KLNTVRKILYKLYDARLADYK   69 (178)
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEe
Confidence            47787765 89999999999999    799999999999999999954

>PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length

Probab=90.83  E-value=0.17  Score=36.30  Aligned_cols=64  Identities=28%  Similarity=0.319  Sum_probs=45.0

Q ss_pred             cccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHH----------HHhcCcce-eccccccCCCeEecChhch
Q 043063            7 RDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILR----------LLTNYGVF-SEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         7 ~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~----------~L~~~g~l-~~~~~~~~~~~y~~t~~s~   72 (301)
                      ++..|+..|..   .+.+..|||+.+++    ++..+..-|+          .|+.+|++ ++.... ..-.|++|+.++
T Consensus        10 ~R~~vl~~L~~~yp~~~~~~eIar~v~~----~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~-g~k~Y~lT~~G~   84 (90)
T PF07381_consen   10 VRKKVLEYLCSIYPEPAYPSEIARSVGS----DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKG-GFKYYRLTEKGK   84 (90)
T ss_pred             HHHHHHHHHHHcCCCcCCHHHHHHHHCC----CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecC-CeeEEEeChhhh
Confidence            34556667753   57899999999999    7777776665          58999999 333211 223699999876


Q ss_pred             hhh
Q 043063           73 SLV   75 (301)
Q Consensus        73 ~l~   75 (301)
                      .++
T Consensus        85 ~~~   87 (90)
T PF07381_consen   85 RIA   87 (90)
T ss_pred             hHH
Confidence            543

The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.44  E-value=0.13  Score=40.19  Aligned_cols=61  Identities=20%  Similarity=0.306  Sum_probs=42.6

Q ss_pred             hcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCccCCc---ccEeeH
Q 043063          153 DGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIPA---ADAIFM  209 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~~p~---~D~v~~  209 (301)
                      +.|+++ .+..+.|+|||.|              ++||+ |+.++.++++     -++.+...|+.++.+.   .|..++
T Consensus        42 ~Tygdi-Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtavi  120 (185)
T KOG3420|consen   42 NTYGDI-EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVI  120 (185)
T ss_pred             hhhccc-cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEe
Confidence            344434 3478999999995              68898 8888887653     4678888888776443   377766


Q ss_pred             hhhhc
Q 043063          210 KWVLT  214 (301)
Q Consensus       210 ~~vlh  214 (301)
                      ..-+.
T Consensus       121 NppFG  125 (185)
T KOG3420|consen  121 NPPFG  125 (185)
T ss_pred             cCCCC
Confidence            65543

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=90.41  E-value=1.1  Score=39.21  Aligned_cols=94  Identities=17%  Similarity=0.220  Sum_probs=63.9

Q ss_pred             CCceeEEeCCCCccC-Cc-----ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh
Q 043063          187 IPGVTHIGGDMFKSI-PA-----ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE  260 (301)
Q Consensus       187 ~~ri~~~~gd~~~~~-p~-----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~  260 (301)
                      ..+++...|||.+-. +.     .|+|+..+.+--  -+.....|+.+++.|+|||..+=+-+..=...           
T Consensus       143 ~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDT--A~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~-----------  209 (270)
T PF07942_consen  143 PSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDT--AENIIEYIETIEHLLKPGGYWINFGPLLYHFE-----------  209 (270)
T ss_pred             CCceeEecCccEEecCCcccCCcccEEEEEEEeec--hHHHHHHHHHHHHHhccCCEEEecCCccccCC-----------
Confidence            578999999998752 22     288887765521  23478999999999999996664444332110           


Q ss_pred             ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                       +.. .  .....-+.+.+|++++.+..||+.++...
T Consensus       210 -~~~-~--~~~~sveLs~eEi~~l~~~~GF~~~~~~~  242 (270)
T PF07942_consen  210 -PMS-I--PNEMSVELSLEEIKELIEKLGFEIEKEES  242 (270)
T ss_pred             -CCC-C--CCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence             000 0  01123567999999999999999987655

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=90.18  E-value=0.25  Score=45.19  Aligned_cols=87  Identities=18%  Similarity=0.200  Sum_probs=61.8

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLT  214 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh  214 (301)
                      +...++|+|||.|              +++|. +.-+..+..       .+.-.++.+|+... +++  .|.+.+..+..
T Consensus       110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~  189 (364)
T KOG1269|consen  110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVC  189 (364)
T ss_pred             ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecc
Confidence            3447889999994              23333 222222111       24555688888765 555  49999999998


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063          215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD  248 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~  248 (301)
                      +.++.  .+++++++++++|||..++.|.+....
T Consensus       190 ~~~~~--~~~y~Ei~rv~kpGG~~i~~e~i~~~~  221 (364)
T KOG1269|consen  190 HAPDL--EKVYAEIYRVLKPGGLFIVKEWIKTAK  221 (364)
T ss_pred             cCCcH--HHHHHHHhcccCCCceEEeHHHHHhhh
Confidence            88886  499999999999999999999887543

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=90.05  E-value=0.16  Score=41.90  Aligned_cols=75  Identities=20%  Similarity=0.321  Sum_probs=50.1

Q ss_pred             eEEeecCCce---------------eeeeh-hH---HHhhCC---CCCceeEEeCCCCcc-CCc-ccEeeHhhhhccCCh
Q 043063          163 RLVDVGGSAG---------------INFDL-PE---VVAEAP---SIPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD  218 (301)
Q Consensus       163 ~vlDvGgG~g---------------~~~Dl-p~---v~~~a~---~~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d  218 (301)
                      +++|||.|.|               +.+|. ..   .+..+.   ..++++++.+.+.+. .+. .|+++++.+-    +
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----~  126 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----P  126 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS----S
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc----C
Confidence            7999999996               23343 11   111111   147899999888762 333 5999998864    2


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        ...+++-+...+++||+++..-.
T Consensus       127 --l~~l~~~~~~~l~~~G~~l~~KG  149 (184)
T PF02527_consen  127 --LDKLLELARPLLKPGGRLLAYKG  149 (184)
T ss_dssp             --HHHHHHHHGGGEEEEEEEEEEES
T ss_pred             --HHHHHHHHHHhcCCCCEEEEEcC
Confidence              34788888889999999988754

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>TIGR00373 conserved hypothetical protein TIGR00373

Probab=89.91  E-value=0.28  Score=39.38  Aligned_cols=44  Identities=14%  Similarity=0.097  Sum_probs=38.7

Q ss_pred             cccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            9 GGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         9 lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..|+++|. .|.+|-++||..+|+    +...++++|..|...|++...
T Consensus        17 v~Vl~aL~~~~~~tdEeLa~~Lgi----~~~~VRk~L~~L~e~~Lv~~~   61 (158)
T TIGR00373        17 GLVLFSLGIKGEFTDEEISLELGI----KLNEVRKALYALYDAGLADYK   61 (158)
T ss_pred             HHHHHHHhccCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCceee
Confidence            34677776 589999999999999    899999999999999999654

This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.

>PF08461 HTH_12: Ribonuclease R winged-helix domain; InterPro: IPR013668 This domain is found at the amino terminus of Ribonuclease R and a number of presumed transcriptional regulatory proteins from archaea

Probab=89.91  E-value=0.28  Score=33.07  Aligned_cols=58  Identities=26%  Similarity=0.334  Sum_probs=42.7

Q ss_pred             cccccC--CCCCCHHHHHHHhCCCCCC-CcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063           11 KKGRLA--NTPLSASQILTRILPSGGG-DAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus        11 lf~~L~--~g~~t~~ela~~~~~~~~~-~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      |++.|.  ++|++..+|++.++...-. .+..+++.|++|...|++.+.    ..+.+.+|+.+.
T Consensus         3 IL~~L~~~~~P~g~~~l~~~L~~~g~~~se~avRrrLr~me~~Glt~~~----g~~G~~iT~~G~   63 (66)
T PF08461_consen    3 ILRILAESDKPLGRKQLAEELKLRGEELSEEAVRRRLRAMERDGLTRKV----GRQGRIITEKGL   63 (66)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHhcChhhhHHHHHHHHHHHHHCCCcccc----CCcccccCHHHH
Confidence            455564  4799999999998763110 257999999999999988876    355677887664

>PRK15431 ferrous iron transport protein FeoC; Provisional

Probab=89.86  E-value=0.27  Score=34.13  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=36.2

Q ss_pred             cccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           13 GRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        13 ~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |+|.. |..++.+||.++++    ++..++.+|..|+.+|-+++.
T Consensus         9 d~l~~~gr~s~~~Ls~~~~~----p~~~VeaMLe~l~~kGkverv   49 (78)
T PRK15431          9 DLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_pred             HHHHHcCcccHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEee
Confidence            55654 88999999999999    799999999999999999987

>PRK05638 threonine synthase; Validated

Probab=89.73  E-value=0.3  Score=46.04  Aligned_cols=65  Identities=18%  Similarity=0.206  Sum_probs=51.2

Q ss_pred             cccccccccCCCCCCHHHHHHHhC--CCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLANTPLSASQILTRIL--PSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .++-|+..|.+++.+..||++.++  +    ....+.+.|+.|...|+++.....+..-.|++|+.++.+.
T Consensus       372 ~r~~IL~~L~~~~~~~~el~~~l~~~~----s~~~v~~hL~~Le~~GLV~~~~~~g~~~~Y~Lt~~g~~~l  438 (442)
T PRK05638        372 TKLEILKILSEREMYGYEIWKALGKPL----KYQAVYQHIKELEELGLIEEAYRKGRRVYYKLTEKGRRLL  438 (442)
T ss_pred             hHHHHHHHHhhCCccHHHHHHHHcccC----CcchHHHHHHHHHHCCCEEEeecCCCcEEEEECcHHHHHH
Confidence            366788899989999999999998  6    5789999999999999997531111233599999886543

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=89.34  E-value=0.38  Score=41.95  Aligned_cols=81  Identities=19%  Similarity=0.324  Sum_probs=49.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhh----CCCCCceeEEeCCCCcc-CCc----cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAE----APSIPGVTHIGGDMFKS-IPA----AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~----a~~~~ri~~~~gd~~~~-~p~----~D  205 (301)
                      +.+++..+ ..+...|||||+|.|             +++|. +..++.    ....++++++.+|+++- .+.    ..
T Consensus        20 ~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~~~~~~   98 (262)
T PF00398_consen   20 DKIVDALD-LSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDLLKNQP   98 (262)
T ss_dssp             HHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGHCSSSE
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHhhcCCc
Confidence            45555554 667889999999997             34554 333333    22368999999999975 444    34


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCC
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPA  234 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~p  234 (301)
                      +.++++.-++.+    ..++.++...-..
T Consensus        99 ~~vv~NlPy~is----~~il~~ll~~~~~  123 (262)
T PF00398_consen   99 LLVVGNLPYNIS----SPILRKLLELYRF  123 (262)
T ss_dssp             EEEEEEETGTGH----HHHHHHHHHHGGG
T ss_pred             eEEEEEecccch----HHHHHHHhhcccc
Confidence            455555443333    3566666653333

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators

Probab=89.18  E-value=0.39  Score=36.05  Aligned_cols=61  Identities=25%  Similarity=0.269  Sum_probs=42.1

Q ss_pred             ccccccccCC--CCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            8 DGGKKGRLAN--TPLSASQILTRILPSGG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         8 ~lglf~~L~~--g~~t~~ela~~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      +.-|++.|..  ++.|+++|.+.+.-..| -+..-+.|.|+.|+..|++.+...++....|.++
T Consensus         3 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~~~~~~~~~~~y~~~   66 (116)
T cd07153           3 RLAILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVREIELGDGKARYELN   66 (116)
T ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEEEEEeCCCceEEEeC
Confidence            3456777753  68999999999843211 1567889999999999999987422112356553

Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.

>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif

Probab=89.07  E-value=0.42  Score=30.68  Aligned_cols=38  Identities=8%  Similarity=-0.002  Sum_probs=29.8

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHH
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRL   46 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~   46 (301)
                      +.+|.++|-|+.=.  ..|..+||+.+|+    .+..+...||-
T Consensus         9 L~~A~~~GYfd~PR--~~tl~elA~~lgi----s~st~~~~LRr   46 (53)
T PF04967_consen    9 LKAAYELGYFDVPR--RITLEELAEELGI----SKSTVSEHLRR   46 (53)
T ss_pred             HHHHHHcCCCCCCC--cCCHHHHHHHhCC----CHHHHHHHHHH
Confidence            46899999999764  5799999999999    46566655554

This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.

>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family

Probab=88.98  E-value=0.55  Score=30.96  Aligned_cols=36  Identities=17%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .++.+..+||+.+|+    .+..+...++-|...|+++..
T Consensus        20 ~~~v~~~~iA~~L~v----s~~tvt~ml~~L~~~GlV~~~   55 (60)
T PF01325_consen   20 GGPVRTKDIAERLGV----SPPTVTEMLKRLAEKGLVEYE   55 (60)
T ss_dssp             TSSBBHHHHHHHHTS-----HHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCccHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEec
Confidence            478999999999999    688999999999999999987

The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=88.90  E-value=0.54  Score=43.28  Aligned_cols=60  Identities=8%  Similarity=0.142  Sum_probs=51.4

Q ss_pred             CCceeEEeCCCCcc---CCc-c-cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          187 IPGVTHIGGDMFKS---IPA-A-DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       187 ~~ri~~~~gd~~~~---~p~-~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .+||+++.+++.+-   .|. . |.++++.++--+++++..++++++.++++|||+++.-....+
T Consensus       274 ~drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~  338 (380)
T PF11899_consen  274 LDRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAVP  338 (380)
T ss_pred             CCeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence            48999999988763   443 3 999999999888999999999999999999999998877554

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A

Probab=88.89  E-value=0.68  Score=31.72  Aligned_cols=43  Identities=23%  Similarity=0.363  Sum_probs=37.3

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      +.|-++||..+|+    ....+.+.|+.|...|+++..     .+.+.....
T Consensus        28 ~lt~~~iA~~~g~----sr~tv~r~l~~l~~~g~I~~~-----~~~i~I~d~   70 (76)
T PF13545_consen   28 PLTQEEIADMLGV----SRETVSRILKRLKDEGIIEVK-----RGKIIILDP   70 (76)
T ss_dssp             ESSHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESSH
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc-----CCEEEECCH
Confidence            6799999999999    788999999999999999987     556666543

...

>PF14394 DUF4423: Domain of unknown function (DUF4423)

Probab=88.76  E-value=0.78  Score=37.28  Aligned_cols=46  Identities=24%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRI--LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~--~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +..+.++||+++  ++    ...-++.-|+.|..+|++.++    ++|.|..|..+
T Consensus        38 ~~~d~~~iak~l~p~i----s~~ev~~sL~~L~~~gli~k~----~~g~y~~t~~~   85 (171)
T PF14394_consen   38 FAPDPEWIAKRLRPKI----SAEEVRDSLEFLEKLGLIKKD----GDGKYVQTDKS   85 (171)
T ss_pred             CCCCHHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEC----CCCcEEEecce
Confidence            344999999999  88    688999999999999999999    46799999754

>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets

Probab=88.52  E-value=0.49  Score=30.29  Aligned_cols=38  Identities=16%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             ccccc--CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc
Q 043063           11 KKGRL--ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGV   52 (301)
Q Consensus        11 lf~~L--~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~   52 (301)
                      |+..|  .+++.|.++||+.+++    ..+-+.+-+..|...|+
T Consensus         5 il~~L~~~~~~it~~eLa~~l~v----S~rTi~~~i~~L~~~~~   44 (55)
T PF08279_consen    5 ILKLLLESKEPITAKELAEELGV----SRRTIRRDIKELREWGI   44 (55)
T ss_dssp             HHHHHHHTTTSBEHHHHHHHCTS-----HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHcCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCC
Confidence            45566  2467999999999999    79999999999999993

The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....

>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional

Probab=88.49  E-value=0.64  Score=39.28  Aligned_cols=57  Identities=19%  Similarity=0.253  Sum_probs=45.1

Q ss_pred             ccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           14 RLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        14 ~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .+.+ ..+|..+||+.+++    ++..+.+.|+.|...|++++.... ....+++|+.++.+.
T Consensus        15 ~l~~~~~IS~~eLA~~L~i----S~~Tvsr~Lk~LEe~GlI~R~~~~-r~~~v~LTekG~~ll   72 (217)
T PRK14165         15 AVNNTVKISSSEFANHTGT----SSKTAARILKQLEDEGYITRTIVP-RGQLITITEKGLDVL   72 (217)
T ss_pred             ccCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEEcC-CceEEEECHHHHHHH
Confidence            4443 45899999999999    799999999999999999987321 234688888886554

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=88.28  E-value=0.56  Score=38.94  Aligned_cols=59  Identities=14%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             CceeEEeCCCCccCCcc-cEeeHhhhhccCChHH-----------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          188 PGVTHIGGDMFKSIPAA-DAIFMKWVLTTWTDDE-----------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       188 ~ri~~~~gd~~~~~p~~-D~v~~~~vlh~~~d~~-----------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .+|.++..+.+.-+|+. .--.++-+++.+||..           +..++.+..=.|++||.++.+.-+.+
T Consensus       117 ~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytitDv~e  187 (249)
T KOG3115|consen  117 PNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTITDVKE  187 (249)
T ss_pred             ccceeeeccchhhccchhhhcccccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEeeHHH
Confidence            56777777766555641 2112223333344432           34567777788999999988876554

>PRK03573 transcriptional regulator SlyA; Provisional

Probab=88.20  E-value=0.95  Score=35.43  Aligned_cols=62  Identities=21%  Similarity=0.236  Sum_probs=45.8

Q ss_pred             cccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063           11 KKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT   76 (301)
Q Consensus        11 lf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~   76 (301)
                      ++..|..  ++.|..+||+.+++    ++..+.++++.|+..|+|++.....  ..-.+.+|+.++.+..
T Consensus        36 vL~~l~~~~~~~t~~eLa~~l~~----~~~tvt~~v~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~  101 (144)
T PRK03573         36 TLHNIHQLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLISRQTCASDRRAKRIKLTEKAEPLIS  101 (144)
T ss_pred             HHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeecCCCCcCeeeeEEChHHHHHHH
Confidence            3444542  45799999999999    8899999999999999999874210  0114778887766543

>PRK10870 transcriptional repressor MprA; Provisional

Probab=88.09  E-value=0.98  Score=36.88  Aligned_cols=62  Identities=19%  Similarity=0.193  Sum_probs=47.0

Q ss_pred             ccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063           10 GKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT   76 (301)
Q Consensus        10 glf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~   76 (301)
                      .++-.|.   .++.|..+||+.+++    ++..+.++++-|+..|+|++.... .+   -...+|+.++.+..
T Consensus        59 ~iL~~L~~~~~~~it~~eLa~~l~l----~~~tvsr~v~rLe~kGlV~R~~~~-~DrR~~~v~LT~~G~~~~~  126 (176)
T PRK10870         59 MALITLESQENHSIQPSELSCALGS----SRTNATRIADELEKRGWIERRESD-NDRRCLHLQLTEKGHEFLR  126 (176)
T ss_pred             HHHHHHhcCCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCC-CCCCeeEEEECHHHHHHHH
Confidence            3444453   356899999999999    788999999999999999987422 11   14778888876654

>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional

Probab=87.79  E-value=0.46  Score=45.45  Aligned_cols=68  Identities=18%  Similarity=0.203  Sum_probs=55.1

Q ss_pred             cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCC
Q 043063            5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA   78 (301)
Q Consensus         5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~   78 (301)
                      +..+..++..|.. ++.|..+||+.+++    ++..+.+.++.|.+.|++++...  ....|.+|+.++.+....
T Consensus         5 t~~e~~vL~~L~~~~~~s~~eLA~~l~l----~~~tVt~~i~~Le~kGlV~~~~~--~~~~i~LTeeG~~~~~~g   73 (489)
T PRK04172          5 HPNEKKVLKALKELKEATLEELAEKLGL----PPEAVMRAAEWLEEKGLVKVEER--VEEVYVLTEEGKKYAEEG   73 (489)
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEEEee--eEEEEEECHHHHHHHHhc
Confidence            4556677888875 78999999999999    89999999999999999998721  124699999998665543

>PRK11169 leucine-responsive transcriptional regulator; Provisional

Probab=87.40  E-value=0.44  Score=38.40  Aligned_cols=46  Identities=15%  Similarity=0.108  Sum_probs=40.7

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ++..|++.|.. +..|..+||+++|+    .+..+.+=++.|...|++...
T Consensus        15 ~D~~IL~~Lq~d~R~s~~eiA~~lgl----S~~tv~~Ri~rL~~~GvI~~~   61 (164)
T PRK11169         15 IDRNILNELQKDGRISNVELSKRVGL----SPTPCLERVRRLERQGFIQGY   61 (164)
T ss_pred             HHHHHHHHhccCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            56778899975 88999999999999    688999999999999999854

>TIGR00498 lexA SOS regulatory protein LexA

Probab=87.36  E-value=0.43  Score=39.72  Aligned_cols=53  Identities=15%  Similarity=0.109  Sum_probs=42.4

Q ss_pred             cccccccccccCC------CCCCHHHHHHHhCCCCCCC-cccHHHHHHHHhcCcceeccccccCCCeEe
Q 043063            5 ECRDGGKKGRLAN------TPLSASQILTRILPSGGGD-AENLQRILRLLTNYGVFSEHREFGGERKYS   66 (301)
Q Consensus         5 ~a~~lglf~~L~~------g~~t~~ela~~~~~~~~~~-~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~   66 (301)
                      +..+..|++.|.+      -+.|..|||+++|+    + +..+.+.|+.|...|++.+.     ++.|+
T Consensus         5 t~~q~~iL~~l~~~~~~~~~~~~~~ela~~~~~----~s~~tv~~~l~~L~~~g~i~~~-----~~~~~   64 (199)
T TIGR00498         5 TARQQEVLDLIRAHIESTGYPPSIREIARAVGL----RSPSAAEEHLKALERKGYIERD-----PGKPR   64 (199)
T ss_pred             CHHHHHHHHHHHHHHHhcCCCCcHHHHHHHhCC----CChHHHHHHHHHHHHCCCEecC-----CCCCC
Confidence            4555666777752      25789999999999    6 78999999999999999988     55655

LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=87.34  E-value=1.8  Score=39.15  Aligned_cols=83  Identities=22%  Similarity=0.211  Sum_probs=56.8

Q ss_pred             CCCcceEEeecCCce-------------eeeehhHHHhhCCCCCceeEEeCCCCccCC-c--ccEeeHhhhhccCChHHH
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A--ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p-~--~D~v~~~~vlh~~~d~~~  221 (301)
                      +....++|||||++|             +.+|.-.+.+.....+||+++.+|.+...| .  .|++++=.+-   .+.  
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~--  283 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA--  283 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH--
Confidence            346789999999995             567876666666668999999999988755 3  3887776653   333  


Q ss_pred             HHHHHHHHHhCCCC-CEEEEeccccC
Q 043063          222 KLIMENCYKAIPAG-GKLIACEPVLP  246 (301)
Q Consensus       222 ~~iL~~~~~aL~pg-g~lli~e~~~~  246 (301)
                       ++++-+.++|..| .+-.|+.--.+
T Consensus       284 -rva~lm~~Wl~~g~cr~aIfnLKlp  308 (357)
T PRK11760        284 -RVAELMAQWLVNGWCREAIFNLKLP  308 (357)
T ss_pred             -HHHHHHHHHHhcCcccEEEEEEEcC
Confidence             5666666677766 34444444343

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=86.97  E-value=3.4  Score=38.09  Aligned_cols=56  Identities=13%  Similarity=0.236  Sum_probs=37.8

Q ss_pred             eEEeCCCCcc-CCcc--cEeeHhhhhccCCh--H----------------------H------------HHHHHHHHHHh
Q 043063          191 THIGGDMFKS-IPAA--DAIFMKWVLTTWTD--D----------------------E------------CKLIMENCYKA  231 (301)
Q Consensus       191 ~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d--~----------------------~------------~~~iL~~~~~a  231 (301)
                      .-++|.|+.. +|..  ++++.+..||-++.  +                      .            -..+|+-=++-
T Consensus       147 ~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~E  226 (386)
T PLN02668        147 AGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQE  226 (386)
T ss_pred             EecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467899987 8873  89999999885542  1                      1            12344444566


Q ss_pred             CCCCCEEEEeccccC
Q 043063          232 IPAGGKLIACEPVLP  246 (301)
Q Consensus       232 L~pgg~lli~e~~~~  246 (301)
                      |.|||++++.-.-.+
T Consensus       227 LvpGG~mvl~~~Gr~  241 (386)
T PLN02668        227 MKRGGAMFLVCLGRT  241 (386)
T ss_pred             hccCcEEEEEEecCC
Confidence            899999888765543

>COG3432 Predicted transcriptional regulator [Transcription]

Probab=86.86  E-value=0.27  Score=35.54  Aligned_cols=57  Identities=18%  Similarity=0.297  Sum_probs=44.7

Q ss_pred             cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063           11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      |+....++.....-|.-.+++    +....++.++.|+..|++....    ++   .|.+|+.+.-|.
T Consensus        23 IL~~~~~~~~~~Tri~y~aNl----ny~~~~~yi~~L~~~Gli~~~~----~~~~~~y~lT~KG~~fl   82 (95)
T COG3432          23 ILKAISEGGIGITRIIYGANL----NYKRAQKYIEMLVEKGLIIKQD----NGRRKVYELTEKGKRFL   82 (95)
T ss_pred             HHHHhcCCCCCceeeeeecCc----CHHHHHHHHHHHHhCCCEEecc----CCccceEEEChhHHHHH
Confidence            333344577777788888899    8999999999999999766662    44   699999997664

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=86.75  E-value=0.46  Score=38.76  Aligned_cols=92  Identities=17%  Similarity=0.242  Sum_probs=46.3

Q ss_pred             HHhhhcCCCCC--CcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------C
Q 043063          149 TSILDGYDGFK--GVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------I  201 (301)
Q Consensus       149 ~~~~~~~~~~~--~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~  201 (301)
                      .++.+.++-++  +..++||+||+.|                +.+|+...-    ....+.++.+|++++         .
T Consensus        10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~----~~~~~~~i~~d~~~~~~~~~i~~~~   85 (181)
T PF01728_consen   10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD----PLQNVSFIQGDITNPENIKDIRKLL   85 (181)
T ss_dssp             HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG----S-TTEEBTTGGGEEEEHSHHGGGSH
T ss_pred             HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccc----cccceeeeecccchhhHHHhhhhhc
Confidence            44555553233  4589999999995                456764331    124455555665532         1


Q ss_pred             C----cccEeeHhhhhcc-----C----ChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          202 P----AADAIFMKWVLTT-----W----TDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       202 p----~~D~v~~~~vlh~-----~----~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +    ..|+|++=.....     .    +-+-+...|.-+.+.|+|||.+++--..
T Consensus        86 ~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~  141 (181)
T PF01728_consen   86 PESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK  141 (181)
T ss_dssp             GTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred             cccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence            1    1366655441111     1    1122334455555668999987765553

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=86.41  E-value=5.5  Score=35.52  Aligned_cols=93  Identities=15%  Similarity=0.250  Sum_probs=62.1

Q ss_pred             CceeEEeCCCCccCC--c----ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-CChHHhhhhhh
Q 043063          188 PGVTHIGGDMFKSIP--A----ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-NESQRTRALLE  260 (301)
Q Consensus       188 ~ri~~~~gd~~~~~p--~----~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-~~~~~~~~~~~  260 (301)
                      +..+..+|||.+-.+  +    .|+|+..+.+-  .-......|..+.+.|+|||..+-.-+..-.-. ..+ .      
T Consensus       238 ~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~GGvWiNlGPLlYHF~d~~g-~------  308 (369)
T KOG2798|consen  238 GSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKPGGVWINLGPLLYHFEDTHG-V------  308 (369)
T ss_pred             CCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccCCcEEEeccceeeeccCCCC-C------
Confidence            445668899987533  3    28877775442  234578999999999999998876665442110 000 0      


Q ss_pred             ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                       .       ...+-+.+.+++.++.+.-||++++..-
T Consensus       309 -~-------~~~siEls~edl~~v~~~~GF~~~ke~~  337 (369)
T KOG2798|consen  309 -E-------NEMSIELSLEDLKRVASHRGFEVEKERG  337 (369)
T ss_pred             -c-------ccccccccHHHHHHHHHhcCcEEEEeee
Confidence             0       1124567999999999999999988663

>COG1378 Predicted transcriptional regulators [Transcription]

Probab=86.34  E-value=1.1  Score=38.80  Aligned_cols=58  Identities=17%  Similarity=0.109  Sum_probs=46.1

Q ss_pred             cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063           11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL   74 (301)
Q Consensus        11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l   74 (301)
                      ++-.|- -|+.|+.|||+.+|+    +...+..+|+.|...|+++..+  |.+..|+.-+....+
T Consensus        21 vY~aLl~~g~~tA~eis~~sgv----P~~kvY~vl~sLe~kG~v~~~~--g~P~~y~av~p~~~i   79 (247)
T COG1378          21 VYLALLCLGEATAKEISEASGV----PRPKVYDVLRSLEKKGLVEVIE--GRPKKYRAVPPEELI   79 (247)
T ss_pred             HHHHHHHhCCccHHHHHHHcCC----CchhHHHHHHHHHHCCCEEeeC--CCCceEEeCCHHHHH
Confidence            344444 499999999999999    6779999999999999999873  246678887765543

>PRK04214 rbn ribonuclease BN/unknown domain fusion protein; Reviewed

Probab=86.27  E-value=1.1  Score=41.91  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .|.|.++|++++++    +++.++++|+.|...|++.+.    +++.|.+...
T Consensus       309 ~~~t~~~La~~l~~----~~~~v~~iL~~L~~agLI~~~----~~g~~~l~rd  353 (412)
T PRK04214        309 KALDVDEIRRLEPM----GYDELGELLCELARIGLLRRG----ERGQWVLARD  353 (412)
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHhCCCeEec----CCCceEecCC
Confidence            58899999999999    899999999999999999977    3567877653

>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional

Probab=86.08  E-value=0.41  Score=38.07  Aligned_cols=46  Identities=9%  Similarity=0.124  Sum_probs=40.6

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|.. +..|..+||+++|+    .+..+.+=++.|...|++...
T Consensus        10 ~D~~Il~~Lq~d~R~s~~eiA~~lgl----S~~tV~~Ri~rL~~~GvI~~~   56 (153)
T PRK11179         10 LDRGILEALMENARTPYAELAKQFGV----SPGTIHVRVEKMKQAGIITGT   56 (153)
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeE
Confidence            56778888975 88999999999999    688999999999999999754

>COG4189 Predicted transcriptional regulator [Transcription]

Probab=85.99  E-value=0.38  Score=40.52  Aligned_cols=48  Identities=13%  Similarity=0.137  Sum_probs=41.3

Q ss_pred             cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+++..|++.|+. ||+.+.|||+++|+    +..-+..-++.|+..|+++..
T Consensus        22 S~vRv~Il~lL~~k~plNvneiAe~lgL----pqst~s~~ik~Le~aGlirT~   70 (308)
T COG4189          22 SKVRVAILQLLHRKGPLNVNEIAEALGL----PQSTMSANIKVLEKAGLIRTE   70 (308)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHhCC----chhhhhhhHHHHHhcCceeee
Confidence            4577888999986 99999999999999    566777889999999999854

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=85.44  E-value=1.1  Score=37.69  Aligned_cols=76  Identities=21%  Similarity=0.373  Sum_probs=47.5

Q ss_pred             cceEEeecCCcee---------------eeeh-h---HHHhhCC---CCCceeEEeCCCCcc--CCc-ccEeeHhhhhcc
Q 043063          161 VKRLVDVGGSAGI---------------NFDL-P---EVVAEAP---SIPGVTHIGGDMFKS--IPA-ADAIFMKWVLTT  215 (301)
Q Consensus       161 ~~~vlDvGgG~g~---------------~~Dl-p---~v~~~a~---~~~ri~~~~gd~~~~--~p~-~D~v~~~~vlh~  215 (301)
                      ..+++|||.|.|.               .+|. .   .-++.+.   ..++++++.+-+.+-  .+. .|+|+++.+-  
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva--  145 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA--  145 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence            5899999999961               2222 0   0111111   147788888876543  234 7999988764  


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                        +  ...++.-+...+++||.++..-
T Consensus       146 --~--L~~l~e~~~pllk~~g~~~~~k  168 (215)
T COG0357         146 --S--LNVLLELCLPLLKVGGGFLAYK  168 (215)
T ss_pred             --c--hHHHHHHHHHhcccCCcchhhh
Confidence              2  2366777777888888776443

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=85.31  E-value=1.1  Score=39.09  Aligned_cols=84  Identities=14%  Similarity=0.130  Sum_probs=47.4

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeC----CCCccCC--cc--cE
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGG----DMFKSIP--AA--DA  206 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~g----d~~~~~p--~~--D~  206 (301)
                      +.....+||+|||+|               +.+|. +..+..|.+       .+||.++..    |.+.+.|  .+  |+
T Consensus       146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl  225 (328)
T KOG2904|consen  146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL  225 (328)
T ss_pred             hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence            445568999999996               45677 444444332       478888744    4444422  22  66


Q ss_pred             eeHhhh--hcc-----------C-----------ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          207 IFMKWV--LTT-----------W-----------TDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       207 v~~~~v--lh~-----------~-----------~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      ++.+--  .|+           +           .-+....++.-+.+.|.|||.+.+-
T Consensus       226 lvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le  284 (328)
T KOG2904|consen  226 LVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLE  284 (328)
T ss_pred             EecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEE
Confidence            554321  110           0           0112345666777888998866543

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=85.10  E-value=1  Score=39.99  Aligned_cols=51  Identities=24%  Similarity=0.326  Sum_probs=38.1

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC----CCceeEEeCCCCc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS----IPGVTHIGGDMFK  199 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~  199 (301)
                      ..++++.+. ..+...+||.+||.|                +++|. |++++.+++    .+|++++.+||.+
T Consensus         8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~   79 (296)
T PRK00050          8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN   79 (296)
T ss_pred             HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence            356666664 556679999999995                56897 888877754    2589999988764

>PF04182 B-block_TFIIIC: B-block binding subunit of TFIIIC; InterPro: IPR007309 Yeast transcription factor IIIC (TFIIIC) is a multisubunit protein complex that interacts with two control elements of class III promoters called the A and B blocks

Probab=85.03  E-value=0.55  Score=32.49  Aligned_cols=48  Identities=15%  Similarity=0.108  Sum_probs=40.8

Q ss_pred             cccccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            5 ECRDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         5 ~a~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |++...+++.++.   ...+..+|+..+|.    |++.+-..++.|...|++.+.
T Consensus         1 t~~~~~~Le~I~rsR~~Gi~q~~L~~~~~~----D~r~i~~~~k~L~~~gLI~k~   51 (75)
T PF04182_consen    1 TDIQYCLLERIARSRYNGITQSDLSKLLGI----DPRSIFYRLKKLEKKGLIVKQ   51 (75)
T ss_pred             CchHHHHHHHHHhcCCCCEehhHHHHHhCC----CchHHHHHHHHHHHCCCEEEE
Confidence            3455667777763   46788999999999    999999999999999999987

This family represents the subunit within TFIIIC involved in B-block binding []. Although defined as a yeast protein, it is also found in a number of other organisms.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=84.89  E-value=0.68  Score=39.79  Aligned_cols=85  Identities=14%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc--ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~  216 (301)
                      ...+|+|||||.-               +.+|+ +..++-...     ..+.++...|.+.+.|.  +|+.++--++|.+
T Consensus       105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l  184 (251)
T PF07091_consen  105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL  184 (251)
T ss_dssp             --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred             CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence            4789999999991               45676 444433322     35677777799988664  6999999999988


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .....-.. -++.++++ .-.++|..+...
T Consensus       185 e~q~~g~g-~~ll~~~~-~~~~vVSfPtrS  212 (251)
T PF07091_consen  185 ERQRRGAG-LELLDALR-SPHVVVSFPTRS  212 (251)
T ss_dssp             HHHSTTHH-HHHHHHSC-ESEEEEEEES--
T ss_pred             HHHhcchH-HHHHHHhC-CCeEEEeccccc
Confidence            76553222 22333343 246777666554

>PRK12423 LexA repressor; Provisional

Probab=84.83  E-value=0.52  Score=39.40  Aligned_cols=50  Identities=10%  Similarity=0.062  Sum_probs=39.4

Q ss_pred             ccccccccccccCC----C--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            4 NECRDGGKKGRLAN----T--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         4 ~~a~~lglf~~L~~----g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .|..+..|++.|.+    +  +-|..|||+++|+.   .+..++..|+.|...|+|+..
T Consensus         4 lt~~q~~il~~l~~~i~~~g~~Ps~~eia~~~g~~---s~~~v~~~l~~L~~~G~l~~~   59 (202)
T PRK12423          4 LTPKRAAILAFIRERIAQAGQPPSLAEIAQAFGFA---SRSVARKHVQALAEAGLIEVV   59 (202)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCC---ChHHHHHHHHHHHHCCCEEec
Confidence            35555667777753    2  56999999999962   466889999999999999987

>PF05732 RepL: Firmicute plasmid replication protein (RepL); InterPro: IPR008813 This entry consists of proteins thought to be involved in plasmid replication

Probab=84.53  E-value=1.4  Score=35.65  Aligned_cols=43  Identities=9%  Similarity=0.180  Sum_probs=38.8

Q ss_pred             CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .|..+||+.+|+    ..+-+.|.++.|...++|.+.    ..|.|.++|.
T Consensus        76 ~t~~~ia~~l~i----S~~Tv~r~ik~L~e~~iI~k~----~~G~Y~iNP~  118 (165)
T PF05732_consen   76 ATQKEIAEKLGI----SKPTVSRAIKELEEKNIIKKI----RNGAYMINPN  118 (165)
T ss_pred             eeHHHHHHHhCC----CHHHHHHHHHHHHhCCcEEEc----cCCeEEECcH
Confidence            478999999999    678999999999999999998    4789999994

; GO: 0006260 DNA replication, 0006276 plasmid maintenance

>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress

Probab=84.36  E-value=2.2  Score=29.62  Aligned_cols=48  Identities=10%  Similarity=0.139  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      .|+...+||+.++.    ++.-++.-+..|.++|+|+..+  +..+.|.-|..+
T Consensus        22 ~PVgSk~ia~~l~~----s~aTIRN~M~~Le~lGlve~~p--~~s~GriPT~~a   69 (78)
T PF03444_consen   22 EPVGSKTIAEELGR----SPATIRNEMADLEELGLVESQP--HPSGGRIPTDKA   69 (78)
T ss_pred             CCcCHHHHHHHHCC----ChHHHHHHHHHHHHCCCccCCC--CCCCCCCcCHHH
Confidence            69999999999999    7889999999999999998531  124668877766

Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=84.11  E-value=19  Score=30.19  Aligned_cols=119  Identities=16%  Similarity=0.249  Sum_probs=70.4

Q ss_pred             cCCCCCCcceEEeecCCcee-------------ee--eh-----hHHHhhCCCCCceeEEeCCCCccC------CcccEe
Q 043063          154 GYDGFKGVKRLVDVGGSAGI-------------NF--DL-----PEVVAEAPSIPGVTHIGGDMFKSI------PAADAI  207 (301)
Q Consensus       154 ~~~~~~~~~~vlDvGgG~g~-------------~~--Dl-----p~v~~~a~~~~ri~~~~gd~~~~~------p~~D~v  207 (301)
                      .++ +++..+||=+|..+|+             ++  +.     -+.+..+.++++|--+-+|...|.      +..|++
T Consensus        71 ~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~Ve~VDvi  149 (231)
T COG1889          71 NFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHLVEKVDVI  149 (231)
T ss_pred             cCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhhcccccEE
Confidence            344 7788999999988863             22  21     235556666788888888987762      224775


Q ss_pred             eHhhhhccCCh-HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          208 FMKWVLTTWTD-DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       208 ~~~~vlh~~~d-~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      +.     +... .++.-+..++..-|++||.+++.=-...-+...+|..-                    -..|. .-|+
T Consensus       150 y~-----DVAQp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~v--------------------f~~ev-~kL~  203 (231)
T COG1889         150 YQ-----DVAQPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEV--------------------FKDEV-EKLE  203 (231)
T ss_pred             EE-----ecCCchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHH--------------------HHHHH-HHHH
Confidence            43     4443 34555677788889999865544333222211122110                    12233 3457


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      +.||++.++..+.
T Consensus       204 ~~~f~i~e~~~Le  216 (231)
T COG1889         204 EGGFEILEVVDLE  216 (231)
T ss_pred             hcCceeeEEeccC
Confidence            7888888887663

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=83.98  E-value=1.6  Score=36.85  Aligned_cols=81  Identities=22%  Similarity=0.390  Sum_probs=51.8

Q ss_pred             CCCcceEEeecCCce--------------eee--eh-h----HHHhhCCCCCceeEEeCCCCcc--C----CcccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG--------------INF--DL-P----EVVAEAPSIPGVTHIGGDMFKS--I----PAADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~--Dl-p----~v~~~a~~~~ri~~~~gd~~~~--~----p~~D~v~~~  210 (301)
                      +.+..+||-+|.++|              +++  +. |    +.+..|+++.+|--+-.|...|  .    +..|+++.-
T Consensus        71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D  150 (229)
T PF01269_consen   71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD  150 (229)
T ss_dssp             --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred             CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence            778899999999884              343  22 2    4556666788999888998876  1    224776542


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       +-  .++ ++.-++.++..-|++||.++|.=
T Consensus       151 -Va--Qp~-Qa~I~~~Na~~fLk~gG~~~i~i  178 (229)
T PF01269_consen  151 -VA--QPD-QARIAALNARHFLKPGGHLIISI  178 (229)
T ss_dssp             --S--STT-HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -CC--ChH-HHHHHHHHHHhhccCCcEEEEEE
Confidence             21  244 45667788888999999877664

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus

Probab=83.83  E-value=1.1  Score=30.64  Aligned_cols=42  Identities=12%  Similarity=0.046  Sum_probs=37.2

Q ss_pred             cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |...|+.+..|.++|-+.+|+    +..-+...|..|+..|++.+.
T Consensus        10 IL~~ls~~c~TLeeL~ekTgi----~k~~LlV~LsrL~k~GiI~Rk   51 (72)
T PF05584_consen   10 ILIILSKRCCTLEELEEKTGI----SKNTLLVYLSRLAKRGIIERK   51 (72)
T ss_pred             HHHHHHhccCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeee
Confidence            455566678999999999999    899999999999999999986

>COG1510 Predicted transcriptional regulators [Transcription]

Probab=83.61  E-value=1.3  Score=35.62  Aligned_cols=39  Identities=18%  Similarity=0.266  Sum_probs=34.5

Q ss_pred             cCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           15 LANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        15 L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      |...|+|++||++++|+    ...++.--++-|...+++.+..
T Consensus        37 ls~~Pmtl~Ei~E~lg~----Sks~vS~~lkkL~~~~lV~~~~   75 (177)
T COG1510          37 LSRKPLTLDEIAEALGM----SKSNVSMGLKKLQDWNLVKKVF   75 (177)
T ss_pred             ecCCCccHHHHHHHHCC----CcchHHHHHHHHHhcchHHhhh
Confidence            44689999999999999    5779999999999999998773

>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain

Probab=83.35  E-value=0.9  Score=42.98  Aligned_cols=69  Identities=16%  Similarity=0.227  Sum_probs=55.8

Q ss_pred             cccccccccccCC-CC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCC
Q 043063            5 ECRDGGKKGRLAN-TP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAE   79 (301)
Q Consensus         5 ~a~~lglf~~L~~-g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~   79 (301)
                      ++.+..|+..|.. ++ .+.++||+.+|+    ++..+.+.+..|.+.|+++....  ....|.+|+.++..+....
T Consensus         2 ~~~e~~iL~~l~~~~~~~~~~~la~~~g~----~~~~v~~~~~~L~~kg~v~~~~~--~~~~~~LT~eG~~~l~~G~   72 (492)
T PLN02853          2 AMAEEALLGALSNNEEISDSGQFAASHGL----DHNEVVGVIKSLHGFRYVDAQDI--KRETWVLTEEGKKYAAEGS   72 (492)
T ss_pred             chHHHHHHHHHHhcCCCCCHHHHHHHcCC----CHHHHHHHHHHHHhCCCEEEEEE--EEEEEEECHHHHHHHHcCC
Confidence            4567788888885 64 799999999999    89999999999999999986632  2457999999976555543

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=83.25  E-value=0.38  Score=38.69  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=32.0

Q ss_pred             ceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-----c-ccEeeHhh
Q 043063          162 KRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-----A-ADAIFMKW  211 (301)
Q Consensus       162 ~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-----~-~D~v~~~~  211 (301)
                      ..|+|+-||.|             +.+|. |..++.++.       .+||+|+.+|+++..+     . .|+|+++=
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP   77 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP   77 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred             CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence            36899988885             45687 666665542       4799999999987522     1 48887653

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=83.18  E-value=2.3  Score=38.90  Aligned_cols=94  Identities=20%  Similarity=0.397  Sum_probs=63.3

Q ss_pred             hhhcCCCCCCcceEEeecCCce---------------eeeeh---hHHHhhC-------------CCCCceeEEeCCCCc
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL---PEVVAEA-------------PSIPGVTHIGGDMFK  199 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl---p~v~~~a-------------~~~~ri~~~~gd~~~  199 (301)
                      +++.+ .......+.|+|+|.|               +++++   |.-++..             ++..-++.+.|+|..
T Consensus       184 i~dEl-~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~  262 (419)
T KOG3924|consen  184 IVDEL-KLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLD  262 (419)
T ss_pred             HHHHh-ccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCC
Confidence            33444 2556788999999996               23322   2222211             113568889999886


Q ss_pred             c------CCcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063          200 S------IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD  248 (301)
Q Consensus       200 ~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~  248 (301)
                      +      ++.+++++..++.  ++++...++ +++..-+++|.+++-.++..+..
T Consensus       263 ~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~-~eil~~ck~gtrIiS~~~L~~r~  314 (419)
T KOG3924|consen  263 PKRVTEIQTEATVIFVNNVA--FDPELKLRS-KEILQKCKDGTRIISSKPLVPRP  314 (419)
T ss_pred             HHHHHHHhhcceEEEEeccc--CCHHHHHhh-HHHHhhCCCcceEeccccccccc
Confidence            5      3457999999987  566554444 47888899999999999988743

>PF02319 E2F_TDP: E2F/DP family winged-helix DNA-binding domain; InterPro: IPR003316 The mammalian transcription factor E2F plays an important role in regulating the expression of genes that are required for passage through the cell cycle

Probab=82.94  E-value=0.7  Score=31.63  Aligned_cols=44  Identities=14%  Similarity=0.236  Sum_probs=35.2

Q ss_pred             cccccCCCCCCHHHHHHHh---CCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLANTPLSASQILTRI---LPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~---~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      +|.....+..++.++|+.+   +..  ...+++..++.+|.++|++++.
T Consensus        16 ~~~~~~~~~i~l~~ia~~l~~~~~k--~~~RRlYDI~NVLealgli~K~   62 (71)
T PF02319_consen   16 LFESSPDKSISLNEIADKLISENVK--TQRRRLYDIINVLEALGLIEKQ   62 (71)
T ss_dssp             HHHHCCCTEEEHHHHHHHCHHHCCH--HHCHHHHHHHHHHHHCTSEEEE
T ss_pred             HHHHCCCCcccHHHHHHHHcccccc--cccchhhHHHHHHHHhCceeec
Confidence            3444455788999999999   761  0368999999999999999996

Multiple E2F family members have been identified that bind to DNA as heterodimers, interacting with proteins known as DP - the dimerisation partners [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005667 transcription factor complex; PDB: 1CF7_B.

>PF13730 HTH_36: Helix-turn-helix domain

Probab=82.84  E-value=1.5  Score=27.93  Aligned_cols=29  Identities=17%  Similarity=0.280  Sum_probs=27.3

Q ss_pred             CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcce
Q 043063           21 SASQILTRILPSGGGDAENLQRILRLLTNYGVF   53 (301)
Q Consensus        21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l   53 (301)
                      |.+.||+.+|+    ..+-+.+.++.|+..|+|
T Consensus        27 S~~~la~~~g~----s~~Tv~~~i~~L~~~G~I   55 (55)
T PF13730_consen   27 SQETLAKDLGV----SRRTVQRAIKELEEKGLI   55 (55)
T ss_pred             CHHHHHHHHCc----CHHHHHHHHHHHHHCcCC
Confidence            89999999999    799999999999999986

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=82.06  E-value=0.77  Score=34.06  Aligned_cols=15  Identities=27%  Similarity=0.601  Sum_probs=11.9

Q ss_pred             CCcceEEeecCCcee
Q 043063          159 KGVKRLVDVGGSAGI  173 (301)
Q Consensus       159 ~~~~~vlDvGgG~g~  173 (301)
                      .....++|||||+|+
T Consensus        57 ~~~~~FVDlGCGNGL   71 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGL   71 (112)
T ss_pred             CCCCceEEccCCchH
Confidence            346789999999963

; GO: 0008168 methyltransferase activity

>PRK06474 hypothetical protein; Provisional

Probab=81.77  E-value=1.2  Score=36.50  Aligned_cols=62  Identities=16%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             ccccccccccCC-C-CCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccc----cCCCeEecChhc
Q 043063            6 CRDGGKKGRLAN-T-PLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREF----GGERKYSLTEIG   71 (301)
Q Consensus         6 a~~lglf~~L~~-g-~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~~~~~y~~t~~s   71 (301)
                      ..++.|++.|.. + +.|+.+|++.+ ++    +..-+.|.|+.|...|+|......    +....|++++.+
T Consensus        11 p~R~~Il~~L~~~~~~~ta~el~~~l~~i----s~aTvYrhL~~L~e~GLI~~~~~~~~~~~~ek~y~~~~~~   79 (178)
T PRK06474         11 PVRMKICQVLMRNKEGLTPLELVKILKDV----PQATLYRHLQTMVDSGILHVVKEKKVRSVSEKYYAINEED   79 (178)
T ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecccccCceeEEEEeccce
Confidence            356778888875 3 49999999999 56    566789999999999999976421    112358888755

>COG1522 Lrp Transcriptional regulators [Transcription]

Probab=81.72  E-value=0.89  Score=35.91  Aligned_cols=47  Identities=17%  Similarity=0.156  Sum_probs=41.2

Q ss_pred             ccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            6 CRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         6 a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..+..|.+.|.. ++.|..+||+++|+    .+..+.+-++-|...|++...
T Consensus         8 ~~D~~IL~~L~~d~r~~~~eia~~lgl----S~~~v~~Ri~~L~~~GiI~~~   55 (154)
T COG1522           8 DIDRRILRLLQEDARISNAELAERVGL----SPSTVLRRIKRLEEEGVIKGY   55 (154)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCceeeE
Confidence            456677888875 88999999999999    688999999999999999876

>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors

Probab=81.06  E-value=0.47  Score=35.13  Aligned_cols=42  Identities=17%  Similarity=0.207  Sum_probs=31.9

Q ss_pred             cccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |++.|. .|.++-++||+.+|+    ++.-++++|..|...|++...
T Consensus        18 Il~~L~~~~~l~de~la~~~~l----~~~~vRkiL~~L~~~~lv~~~   60 (105)
T PF02002_consen   18 ILDALLRKGELTDEDLAKKLGL----KPKEVRKILYKLYEDGLVSYR   60 (105)
T ss_dssp             HHHHHHHH--B-HHHHHHTT-S-----HHHHHHHHHHHHHHSS-EEE
T ss_pred             HHHHHHHcCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCeEEE
Confidence            567776 388999999999999    899999999999999999765

Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	301
1kyw_A	365	Crystal Structure Analysis Of Caffeic Acid5-Hydroxy		7e-51
3reo_A	368	Monolignol O-Methyltransferase (Momt) Length = 368		3e-48
3p9c_A	364	Crystal Structure Of Perennial Ryegrass Lpomt1 Boun		3e-47
1fp1_D	372	Crystal Structure Analysis Of Chalcone O-Methyltran		2e-44
1fpq_A	372	Crystal Structure Analysis Of Selenomethionine Subs		6e-38
2qyo_A	357	Crystal Structure Of Isoflavone O-Methyltransferase		2e-26
1fp2_A	352	Crystal Structure Analysis Of Isoflavone O-Methyltr		1e-25
1fpx_A	352	Crystal Structure Analysis Of Selenomethionine Subs		6e-24
1zg3_A	358	Crystal Structure Of The Isoflavanone 4'-O-Methyltr		6e-18
1zga_A	357	Crystal Structure Of Isoflavanone 4'-o-methyltransf		6e-18
1zgj_A	354	Crystal Structure Of Isoflavanone 4'-O-Methyltransf		6e-18
3lst_A	348	Crystal Structure Of Calo1, Methyltransferase In Ca		2e-12
2ip2_A	334	Structure Of The Pyocyanin Biosynthetic Protein Phz		7e-11
1qzz_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		2e-06
4a6d_A	353	Crystal Structure Of Human N-Acetylserotonin Methyl		3e-06
1xds_A	374	Crystal Structure Of Aclacinomycin-10-Hydroxylase (		1e-05
1tw2_A	360	Crystal Structure Of Carminomycin-4-O-Methyltransfe		1e-05

>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365

Iteration: 1
 Score =  197 bits (500), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 110/287 (38%), Positives = 159/287 (55%), Gaps = 22/287 (7%)
Query: 30  LPSGGGDAE-NLQRILRLLTNYGVFS----EHREFGGERKYSLTEIGKSLVTDAEGQSYA 84
           LP+   DA   L R+LRLL  Y + +      ++   +R Y L  + K LV + +G S +
Sbjct: 66  LPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAKYLVKNEDGVSIS 125
Query: 85  PYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVS 144
              L +    LM +W  + +A+LD  I PF K +G   + Y+G  P  N +  K MS  S
Sbjct: 126 ALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHS 184
Query: 145 VPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPG 189
              M  IL+ Y GF+G+K LVDVGG  G               INFDLP V+ +APS PG
Sbjct: 185 TITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPG 244
Query: 190 VTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS 249
           V H+GGDMF SIP ADA+FMKW+   W+D+ C   ++NCY+A+P  GK+I  E +LP   
Sbjct: 245 VEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAP 304
Query: 250 NESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296
           + S  T+ ++  D+ +M  +   GK  T++EF+ L   AGF   +++
Sbjct: 305 DSSLATKGVVHIDV-IMLAHNPGGKERTQKEFEDLAKGAGFQGFKVH 350

>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368

Iteration: 1
 Score =  188 bits (478), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 106/281 (37%), Positives = 154/281 (54%), Gaps = 24/281 (8%)
Query: 40  LQRILRLLTNYGVFS-EHREFGG---ERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDAL 95
           L R+LRLL +Y V +   RE      ER Y L  + K L  + +G S AP++L      L
Sbjct: 80  LDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVL 139
Query: 96  MSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGY 155
           +  W  + +AIL+  I PF K +G   + Y+G    +N +  K MS  S   M  IL+ Y
Sbjct: 140 LEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMY 198
Query: 156 DGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKS 200
           +GF+G+  +VDVGG  G               INFDLP V+ +AP+  GV H+GGDMF  
Sbjct: 199 NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDG 258
Query: 201 IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE 260
           +P  DAIF+KW+   W+D+ C  +++NCY A+P  GK+I  E +LP   + S  T+ ++ 
Sbjct: 259 VPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIH 318
Query: 261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLDC 301
            D  +M  Y   GK  TE+EF+ L  ++GF   R ++V  C
Sbjct: 319 TDA-LMLAYNPGGKERTEKEFQALAMASGF---RGFKVASC 355

>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364

Iteration: 1
 Score =  185 bits (469), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 157/291 (53%), Gaps = 22/291 (7%)
Query: 20  LSASQILTRILPSGGGDAENL-QRILRLLTNYGVFSEHREFGGE----RKYSLTEIGKSL 74
           L+ +++  ++  +   +A ++  RILRLL +Y V +   E G +    R Y    + K L
Sbjct: 57  LTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCKFL 116
Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
             + +G S A   L +    LM +W  + +A+LD  I PF K +G   + Y+G  P  N 
Sbjct: 117 TPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRFNR 175
Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPE 179
           +  + M   S+     +L+ Y GF+G+  LVDVGG  G               +NFDLP 
Sbjct: 176 VFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPH 235
Query: 180 VVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI 239
           V++EAP  PGVTH+GGDMFK +P+ D I MKW+L  W+D  C  +++NCY A+PA GK++
Sbjct: 236 VISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGKVV 295
Query: 240 ACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
             + +LP +   +  ++ +   D+ +M  +   G+   E+EF+ L   AGF
Sbjct: 296 LVQCILPVNPEANPSSQGVFHVDM-IMLAHNPGGRERYEREFQALARGAGF 345

>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372

Iteration: 1
 Score =  175 bits (444), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 101/300 (33%), Positives = 162/300 (54%), Gaps = 29/300 (9%)
Query: 20  LSASQILTRILPSGGGDAE---NLQRILRLLTNYGVFSEH----REFGGERKYSLTEIGK 72
           +S S+I ++ LP+    ++    L R+LRLL +Y V +       + G ER Y L+ +GK
Sbjct: 63  MSPSEIASK-LPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVGK 121
Query: 73  SLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEM 132
            LV D      A +       AL+  W    EA++D  I+ F  VHG   Y + GK  +M
Sbjct: 122 YLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKM 181
Query: 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL 177
           N +  K+M  V    M  +L+ Y GF+G+  LVDVGG +G               INFDL
Sbjct: 182 NQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDL 241
Query: 178 PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK 237
           P+V+  AP + G+ H+GGDMF S+P  DA+ +K V   W+D++C   + NC+KA+   GK
Sbjct: 242 PQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK 301
Query: 238 LIACEPVLPDDSNESQRTR--ALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
           +I  E +LP++ N S+ ++  + L+  +F+       G+  TE+++++L   +GF   ++
Sbjct: 302 VIIVEFILPEEPNTSEESKLVSTLDNLMFI----TVGGRERTEKQYEKLSKLSGFSKFQV 357

>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372

Iteration: 1
 Score =  154 bits (389), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 83/251 (33%), Positives = 129/251 (51%), Gaps = 17/251 (6%)
Query: 60  GGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG 119
           G ER Y L+ +GK LV D      A +       AL+  W    EA++D  I+ F  VHG
Sbjct: 109 GAERVYGLSXVGKYLVPDESRGYLASFTTFLCYPALLQVWXNFKEAVVDEDIDLFKNVHG 168
Query: 120 EPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG------- 172
              Y + GK  + N +  K+   V        L+ Y GF+G+  LVDVGG +G       
Sbjct: 169 VTKYEFXGKDKKXNQIFNKSXVDVCATEXKRXLEIYTGFEGISTLVDVGGGSGRNLELII 228
Query: 173 --------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLI 224
                   INFDLP+V+  AP + G+ H+GGD F S+P  DA  +K V   W+D++C   
Sbjct: 229 SKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASVPQGDAXILKAVCHNWSDEKCIEF 288
Query: 225 MENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL 284
           + NC+KA+   GK+I  E +LP++ N S+ ++ +   D   +      G+  TE+++++L
Sbjct: 289 LSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLD--NLXFITVGGRERTEKQYEKL 346
Query: 285 GFSAGFPHLRL 295
              +GF   ++
Sbjct: 347 SKLSGFSKFQV 357

>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 87/298 (29%), Positives = 145/298 (48%), Gaps = 26/298 (8%)
Query: 19  PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFS--EHREFGGERK-YSLTEIGKSLV 75
           P++ S  L  IL       +N+QR++R L + G F    ++E   E + Y+LT   + LV
Sbjct: 51  PITLSN-LVSILQIPSTKVDNVQRLMRYLAHNGFFEIITNQELENEEEAYALTVASELLV 109
Query: 76  TDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGL 135
              E    AP V       L +++  + + + +  +  F    G   + +  K PE N L
Sbjct: 110 KGTE-LCLAPMVECVLDPTLSTSFHNLKKWVYEEDLTLFAVNLGCDLWEFLNKNPEYNTL 168
Query: 136 MRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEV 180
              A++  S     ++ D    F+G++ +VDVGG  G               + FD P+V
Sbjct: 169 YNDALASDSKMINLAMKDCNLVFEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKV 228
Query: 181 VAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAG---GK 237
           V        +T++GGDMF S+P ADA+ +K VL  WTD +C  I++ C +A+ +    GK
Sbjct: 229 VENLCGSNNLTYVGGDMFISVPKADAVLLKAVLHDWTDKDCIKILKKCKEAVTSDGKRGK 288
Query: 238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
           +I  + V+ +  +E+Q T+  L   +  +TI    GK   E+E+K+L   AGF   ++
Sbjct: 289 VIVIDMVINEKKDENQLTQIKL---LMNVTISCVNGKERNEEEWKKLFIEAGFQDYKI 343

>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  113 bits (283), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 138/295 (46%), Gaps = 25/295 (8%)
Query: 19  PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA 78
           P+S S +++ IL        N++R++R L + G F    +   E  Y+LT +   L+   
Sbjct: 51  PISLSNLVS-ILQVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALT-VASELLVRG 106
Query: 79  EGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRK 138
                AP V       L  ++  + + I +  +  F    G   + +  K PE N     
Sbjct: 107 SDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 139 AMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE 183
           AM+  S     ++ D    F G++ +VDVGG  G               I FD P+VV  
Sbjct: 167 AMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
Query: 184 APSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAG---GKLIA 240
                 +T++GGDMF SIP ADA+ +K++L  WTD +C  I++ C +A+      GK+  
Sbjct: 227 LSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 286
Query: 241 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
            + V+    +E+Q T+  L  D+ +  +    GK   E+E+K+L   AGF H ++
Sbjct: 287 IDMVIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLFIEAGFQHYKI 338

>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352

Iteration: 1
 Score =  107 bits (268), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/295 (27%), Positives = 134/295 (45%), Gaps = 25/295 (8%)
Query: 19  PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA 78
           P+S S +++ IL        N++R+ R L + G F    +   E  Y+LT +   L+   
Sbjct: 51  PISLSNLVS-ILQVPSSKIGNVRRLXRYLAHNGFFEIITK--EEESYALT-VASELLVRG 106
Query: 79  EGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRK 138
                AP V       L  ++  + + I +  +  F    G   + +  K PE N     
Sbjct: 107 SDLCLAPXVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFND 166
Query: 139 AMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE 183
           A +  S     ++ D    F G++ +VDVGG  G               I FD P+VV  
Sbjct: 167 AXASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVEN 226
Query: 184 APSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAG---GKLIA 240
                 +T++GGD F SIP ADA+ +K++L  WTD +C  I++ C +A+      GK+  
Sbjct: 227 LSGSNNLTYVGGDXFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTI 286
Query: 241 CEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
            + V+    +E+Q T+  L  D+    +    GK   E+E+K+L   AGF H ++
Sbjct: 287 IDXVIDKKKDENQVTQIKLLXDVNXACL---NGKERNEEEWKKLFIEAGFQHYKI 338

>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 22/197 (11%)
Query: 119 GEPTYSYYGKMPEMNGL--MRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGIN-- 174
           GE  + +  K  E + L   + AM+  S  F   + +    F+G++ LVDVGG  G    
Sbjct: 150 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 209
Query: 175 -------------FDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 221
                        FD P+VV        +  +GGDMFKSIP+ADA+ +KWVL  W D++ 
Sbjct: 210 LIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQS 269
Query: 222 KLIMENCYKAIP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE 278
             I++N  +AI      GK+I  +  + + S++   T   L+ D+ ++T++   GK  T+
Sbjct: 270 LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERTK 327
Query: 279 QEFKQLGFSAGFPHLRL 295
           QE+++L + AGF   ++
Sbjct: 328 QEWEKLIYDAGFSSYKI 344

>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357

Iteration: 1
 Score = 88.2 bits (217), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 22/197 (11%)
Query: 119 GEPTYSYYGKMPEMNGL--MRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGIN-- 174
           GE  + +  K  E + L   + AM+  S  F   + +    F+G++ LVDVGG  G    
Sbjct: 149 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 208
Query: 175 -------------FDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 221
                        FD P+VV        +  +GGDMFKSIP+ADA+ +KWVL  W D++ 
Sbjct: 209 LIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQS 268
Query: 222 KLIMENCYKAIP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE 278
             I++N  +AI      GK+I  +  + + S++   T   L+ D+ ++T++   GK  T+
Sbjct: 269 LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERTK 326
Query: 279 QEFKQLGFSAGFPHLRL 295
           QE+++L + AGF   ++
Sbjct: 327 QEWEKLIYDAGFSSYKI 343

>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 62/197 (31%), Positives = 102/197 (51%), Gaps = 22/197 (11%)
Query: 119 GEPTYSYYGKMPEMNGL--MRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGIN-- 174
           GE  + +  K  E + L   + AM+  S  F   + +    F+G++ LVDVGG  G    
Sbjct: 146 GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTK 205
Query: 175 -------------FDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDEC 221
                        FD P+VV        +  +GGDMFKSIP+ADA+ +KWVL  W D++ 
Sbjct: 206 LIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQS 265
Query: 222 KLIMENCYKAIP---AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE 278
             I++N  +AI      GK+I  +  + + S++   T   L+ D+ ++T++   GK  T+
Sbjct: 266 LKILKNSKEAISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERTK 323
Query: 279 QEFKQLGFSAGFPHLRL 295
           QE+++L + AGF   ++
Sbjct: 324 QEWEKLIYDAGFSSYKI 340

>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348

Iteration: 1
 Score = 69.7 bits (169), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 117/282 (41%), Gaps = 41/282 (14%)
Query: 40  LQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAW 99
           L+R+LRLL    V  E      + +++LT+ G +L +D+   + A  +     D     W
Sbjct: 72  LRRVLRLLAVRDVVRE-----SDGRFALTDKGAALRSDSPVPARAGILX--FTDTXF--W 122
Query: 100 PLVHE--AILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDG 157
              H   + L P    F  + G    +Y+    E+  L  +    VS      IL     
Sbjct: 123 TXSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGXETVSAAEHL-ILARAGD 181
Query: 158 FKGVKRLVDVGGS---------------AGINFDLPEVVA----EAPSIPGVTHI-GGDM 197
           F     + DVGG                 G+  D  EVVA    +AP + G   +  GD 
Sbjct: 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDF 241
Query: 198 FKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA 257
            + +P AD   +K +L  W D++   I+ NC +  PA G+++  + V+P+ ++  Q    
Sbjct: 242 LREVPHADVHVLKRILHNWGDEDSVRILTNCRRVXPAHGRVLVIDAVVPEGNDAHQSK-- 299
Query: 258 LLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299
             E D   +      G+  T  E + L  +AG   LRL RV+
Sbjct: 300 --EXDFXXLAAR--TGQERTAAELEPLFTAAG---LRLDRVV 334

>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm Length = 334

Iteration: 1
 Score = 64.7 bits (156), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 74/290 (25%), Positives = 124/290 (42%), Gaps = 50/290 (17%)
Query: 34  GGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQD 93
           G DAE + R++RLL  + +F      G  R          L+ D EG S+   VL + ++
Sbjct: 52  GSDAERIHRLMRLLVAFEIFQ-----GDTRDGYANTPTSHLLRDVEG-SFRDMVLFYGEE 105
Query: 94  ALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPF--MTSI 151
              +AW    EA+L  T   F    GE  YSY  + P+       AM   ++ F  +  +
Sbjct: 106 -FHAAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRL 163
Query: 152 LDGYDGFKGVKRLVDVGGSAGINFDLPEVVAEA-PSIPG--------------------- 189
           LD    F+G +  VDVGG +G   +L + + +A PS  G                     
Sbjct: 164 LD----FRG-RSFVDVGGGSG---ELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLA 215
Query: 190 ---VTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKL-IMENCYKAIPAGGKLIACEPVL 245
              V+ +GGDM + +P+   I++   +    D+   L ++ NC +A+   G+++  E  +
Sbjct: 216 GERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTI 275
Query: 246 PDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL 295
              ++E      L +  +F+       G+H T +E   L    GF   R+
Sbjct: 276 S--ASEPSPMSVLWDVHLFMA----CAGRHRTTEEVVDLLGRGGFAVERI 319

>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 32/163 (19%)
Query: 153 DGYDGFKGVKRLVDVGGSAGINFDLPEVVAEAPSIPG----------------------- 189
           D YD +  V+ ++DVGG  G    L  +   AP + G                       
Sbjct: 176 DAYD-WSAVRHVLDVGGGNGGM--LAAIALRAPHLRGTLVELAGPAERARRRFADAGLAD 232
Query: 190 -VTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD 247
            VT   GD FK +P  AD + + +VL  W+D++   I+  C +A+  GG+L+  +    +
Sbjct: 233 RVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVE 292
Query: 248 DSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
                +    LL  D+ ++T     G+  T  E   L  SAG 
Sbjct: 293 GDGADRFFSTLL--DLRMLTFM--GGRVRTRDEVVDLAGSAGL 331

>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin Methyltransferase (Asmt) In Complex With Sam Length = 353

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 98/256 (38%), Gaps = 33/256 (12%)
Query: 60  GGERKYSLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG 119
           GG+  Y  TE+    +T     S    +L++        W  + +A+ +     +++  G
Sbjct: 79  GGKAFYRNTELSSDYLTTVSPTSQCS-MLKYMGRTSYRCWGHLADAVREGR-NQYLETFG 136
Query: 120 EPTYSYYGKMPEMNGLMRKAMSGVSVPFMT---SILDGYDGFKGVKRLVDVGGSAG---- 172
            P    +  +    G   + M  +   +     S+L  +D       + D+GG AG    
Sbjct: 137 VPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAK 195
Query: 173 -----------INFDLPEVVAEAP---SIPGVTHIG---GDMFKS-IPAADAIFMKWVLT 214
                        FD+PEVV  A    S      I    GD FK  +P AD   +  VL 
Sbjct: 196 ECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLH 255
Query: 215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK 274
            W D +C  ++E  Y     GG ++  E +L +D     R   LL     +  + + +G+
Sbjct: 256 DWADGKCSHLLERIYHTCKPGGGILVIESLLDED-----RRGPLLTQLYSLNMLVQTEGQ 310
Query: 275 HMTEQEFKQLGFSAGF 290
             T   +  L  SAGF
Sbjct: 311 ERTPTHYHMLLSSAGF 326

>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adenosyl-L-Methionine (Sam) And 11-Deoxy- Beta-Rhodomycin (Dbra) Length = 374

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 23/111 (20%)
Query: 190 VTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248
           VT   GD FK +P  AD + + +VL  W+D++   I+  C +A+  GG+L+  +      
Sbjct: 234 VTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLD------ 287
Query: 249 SNESQRTRALLEG---DIFVMTIYRAK------GKHMTEQEFKQLGFSAGF 290
                  RA +EG   D F  T+   +      G+  T  E   L  SAG 
Sbjct: 288 -------RADVEGDGADRFFSTLLDLRXLTFXGGRVRTRDEVVDLAGSAGL 331

>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 121/302 (40%), Gaps = 38/302 (12%)
Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
           RL +  L+ ++ +  +        E L R++R L   G+  E  +  GE  +  TE+G+ 
Sbjct: 43  RLVDHILAGARTVKALAARTDTRPEALLRLIRHLVAIGLLEE--DAPGE--FVPTEVGEL 98
Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILD--PTIEPFVKVHGEPTYSYYGKMPE 131
           L  D      A + L         ++  + +AI    PT E    ++G+P Y      P+
Sbjct: 99  LADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYE---SIYGKPFYEDLAGRPD 155
Query: 132 MNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDL-----PEVVAEAPS 186
           +       ++        +    YD +  V+ ++DVGG  G          P V A    
Sbjct: 156 LRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLE 214
Query: 187 IPG-----------------VTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMENC 228
           + G                 V  + GD F+ +P  ADAI + +VL  W D +   I+  C
Sbjct: 215 MAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRC 274
Query: 229 YKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA 288
            +A+  GG+++  E    DD +E+       E D+ ++      G   T +++  L  SA
Sbjct: 275 AEALEPGGRILIHE---RDDLHENSFNEQFTELDLRMLVFL--GGALRTREKWDGLAASA 329
Query: 289 GF 290
           G 
Sbjct: 330 GL 331

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	301
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	3e-94
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	7e-94
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	6e-93
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	1e-88
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	5e-86
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	3e-85
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	8e-84
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	2e-83
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	3e-83
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	3e-82
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	1e-79
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	3e-63
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	8e-59
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	3e-56
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	8e-52
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	1e-05
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-04

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372

 Score =  282 bits (723), Expect = 3e-94
 Identities = 100/308 (32%), Positives = 156/308 (50%), Gaps = 26/308 (8%)

Query: 12  KGRLANTPLSASQILTR--ILPSGGGDAENLQRILRLLTNYGVFSEHR----EFGGERKY 65
           K       +S S+I ++             L R+LRLL +Y V +       + G ER Y
Sbjct: 55  KATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVY 114

Query: 66  SLTEIGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSY 125
            L+ +GK LV D      A +       AL+  W    EA++D  I+ F  VHG   Y +
Sbjct: 115 GLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEF 174

Query: 126 YGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG------------- 172
            GK  +MN +  K+M  V    M  +L+ Y GF+G+  LVDVGG +G             
Sbjct: 175 MGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLI 234

Query: 173 --INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYK 230
             INFDLP+V+  AP + G+ H+GGDMF S+P  DA+ +K V   W+D++C   + NC+K
Sbjct: 235 KGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHK 294

Query: 231 AIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
           A+   GK+I  E +LP++ N S+ ++ +   D  +       G+  TE+++++L   +GF
Sbjct: 295 ALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFITVG--GRERTEKQYEKLSKLSGF 352

Query: 291 PHLRLYRV 298
                ++V
Sbjct: 353 ---SKFQV 357

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368

 Score =  281 bits (720), Expect = 7e-94
 Identities = 106/304 (34%), Positives = 161/304 (52%), Gaps = 24/304 (7%)

Query: 17  NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR----EFGGERKYSLTEIGK 72
           +  +S ++I  ++  +       L R+LRLL +Y V +           ER Y L  + K
Sbjct: 57  SGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCK 116

Query: 73  SLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEM 132
            L  + +G S AP++L      L+  W  + +AIL+  I PF K +G   + Y+G    +
Sbjct: 117 FLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGI-PFNKAYGMNIFDYHGTDHRI 175

Query: 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL 177
           N +  K MS  S   M  IL+ Y+GF+G+  +VDVGG  G               INFDL
Sbjct: 176 NKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL 235

Query: 178 PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK 237
           P V+ +AP+  GV H+GGDMF  +P  DAIF+KW+   W+D+ C  +++NCY A+P  GK
Sbjct: 236 PHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCYAALPDHGK 295

Query: 238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297
           +I  E +LP   + S  T+ ++  D  +M  Y   GK  TE+EF+ L  ++GF   R ++
Sbjct: 296 VIVAEYILPPSPDPSIATKVVIHTDA-LMLAYNPGGKERTEKEFQALAMASGF---RGFK 351

Query: 298 VLDC 301
           V  C
Sbjct: 352 VASC 355

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364

 Score =  279 bits (714), Expect = 6e-93
 Identities = 98/304 (32%), Positives = 157/304 (51%), Gaps = 25/304 (8%)

Query: 18  TPLSASQILTRILPSGGGDA-ENLQRILRLLTNYGVFSEHREFGG----ERKYSLTEIGK 72
             L+ +++  ++  +   +A + + RILRLL +Y V +   E G      R Y    + K
Sbjct: 55  KSLTPTEVAAKLPSAANPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVCK 114

Query: 73  SLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEM 132
            L  + +G S A   L +    LM +W  + +A+LD  I PF K +G   + Y+G  P  
Sbjct: 115 FLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGI-PFNKAYGMSAFEYHGTDPRF 173

Query: 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL 177
           N +  + M   S+     +L+ Y GF+G+  LVDVGG  G               +NFDL
Sbjct: 174 NRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL 233

Query: 178 PEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK 237
           P V++EAP  PGVTH+GGDMFK +P+ D I MKW+L  W+D  C  +++NCY A+PA GK
Sbjct: 234 PHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCYDALPAHGK 293

Query: 238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297
           ++  + +LP +   +  ++ +   D+ ++  +   G+   E+EF+ L   AGF      +
Sbjct: 294 VVLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGF---TGVK 349

Query: 298 VLDC 301
               
Sbjct: 350 STYI 353

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352

 Score =  267 bits (685), Expect = 1e-88
 Identities = 84/304 (27%), Positives = 140/304 (46%), Gaps = 28/304 (9%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75
              P+S S +++  L        N++R++R L + G F    +   E  Y+LT   + LV
Sbjct: 48  HGKPISLSNLVSI-LQVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLV 104

Query: 76  TDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGL 135
             ++    AP V       L  ++  + + I +  +  F    G   + +  K PE N  
Sbjct: 105 RGSDL-CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTS 163

Query: 136 MRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEV 180
              AM+  S     ++ D    F G++ +VDVGG  G               I FD P+V
Sbjct: 164 FNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQV 223

Query: 181 VAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIP---AGGK 237
           V        +T++GGDMF SIP ADA+ +K++L  WTD +C  I++ C +A+      GK
Sbjct: 224 VENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGK 283

Query: 238 LIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297
           +   + V+    +E+Q T+  L  D+ +  +    GK   E+E+K+L   AGF   + Y+
Sbjct: 284 VTIIDMVIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLFIEAGF---QHYK 337

Query: 298 VLDC 301
           +   
Sbjct: 338 ISPL 341

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348

 Score =  260 bits (667), Expect = 5e-86
 Identities = 74/308 (24%), Positives = 127/308 (41%), Gaps = 41/308 (13%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            L + P + +++        G DA+ L+R+LRLL    V  E      + +++LT+ G +
Sbjct: 50  HLVDGPRTPAELAAAT----GTDADALRRVLRLLAVRDVVRES-----DGRFALTDKGAA 100

Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN 133
           L +D+        +L        +    V  A+       F  + G    +Y+    E+ 
Sbjct: 101 LRSDS-PVPARAGILMFTDTMFWTMSHRVASALGPERP-AFADIFGSSLDAYFDGDAEVE 158

Query: 134 GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP 178
            L  + M  VS      +    D F     + DVGG  G               +  D  
Sbjct: 159 ALYYEGMETVSAAEHLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA 217

Query: 179 EVVA----EAPSIPG-VTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIP 233
           EVVA    +AP + G    + GD  + +P AD   +K +L  W D++   I+ NC + +P
Sbjct: 218 EVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRILTNCRRVMP 277

Query: 234 AGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL 293
           A G+++  + V+P+ ++  Q      E D  ++      G+  T  E + L  +AG    
Sbjct: 278 AHGRVLVIDAVVPEGNDAHQSK----EMDFMMLAART--GQERTAAELEPLFTAAGL--- 328

Query: 294 RLYRVLDC 301
           RL RV+  
Sbjct: 329 RLDRVVGT 336

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369

 Score =  259 bits (664), Expect = 3e-85
 Identities = 69/310 (22%), Positives = 114/310 (36%), Gaps = 43/310 (13%)

Query: 15  LANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74
           L   P +A+ +        G   + L+R+LRLL   GVF +    G +  ++   +   L
Sbjct: 67  LQEGPRTATALAEAT----GAHEQTLRRLLRLLATVGVFDDL---GHDDLFAQNALSAVL 119

Query: 75  VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNG 134
           + D      A             AW  +  ++       F   +G   +    + P+   
Sbjct: 120 LPDP-ASPVATDARFQAAPWHWRAWEQLTHSVRTGEA-SFDVANGTSFWQLTHEDPKARE 177

Query: 135 LMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPE 179
           L  +AM  VS+     +   YD F G    VD+GG  G                  + P 
Sbjct: 178 LFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPP 236

Query: 180 VVAEAPSI-------PGVTHIGGDMFKSIP-AADAIFMKWVLTTWTDDECKLIMENCYKA 231
           V  EA  +            + GD F++IP  AD   +K VL  W DD+   I+     A
Sbjct: 237 VAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDVVRILRRIATA 296

Query: 232 IPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFP 291
           +    +L+  + ++ +    S      L  D+ ++ +    G   +E EF  L   +G  
Sbjct: 297 MKPDSRLLVIDNLIDERPAAST-----LFVDLLLLVLVG--GAERSESEFAALLEKSGL- 348

Query: 292 HLRLYRVLDC 301
             R+ R L C
Sbjct: 349 --RVERSLPC 356

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360

 Score =  255 bits (653), Expect = 8e-84
 Identities = 60/308 (19%), Positives = 115/308 (37%), Gaps = 41/308 (13%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            +     +   +  R         E L R++R L   G+  E        ++  TE+G+ 
Sbjct: 47  HILAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEED----APGEFVPTEVGEL 98

Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN 133
           L  D      A + L         ++  + +AI       +  ++G+P Y      P++ 
Sbjct: 99  LADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLR 157

Query: 134 GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP 178
                 ++        +    YD +  V+ ++DVGG  G                  ++ 
Sbjct: 158 ASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA 216

Query: 179 EVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYK 230
             V  A S          V  + GD F+ +P  ADAI + +VL  W D +   I+  C +
Sbjct: 217 GTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAE 276

Query: 231 AIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
           A+  GG+++  E     +++ +++   L   D+ ++      G   T +++  L  SAG 
Sbjct: 277 ALEPGGRILIHERDDLHENSFNEQFTEL---DLRMLVFLG--GALRTREKWDGLAASAGL 331

Query: 291 PHLRLYRV 298
               +  V
Sbjct: 332 ---VVEEV 336

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332

 Score =  253 bits (649), Expect = 2e-83
 Identities = 65/308 (21%), Positives = 107/308 (34%), Gaps = 45/308 (14%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            +A    +A++I +      G  A++L R+LR L   G+F+      G+  Y LTE G+ 
Sbjct: 33  HIAAGHRTAAEIASAA----GAHADSLDRLLRHLVAVGLFTRD----GQGVYGLTEFGEQ 84

Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN 133
           L  D          +          +  +  +I       +   +G   +   G  P ++
Sbjct: 85  LRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQP-AYPVRYGTSFWEDLGSDPVLS 143

Query: 134 GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP 178
                 MS       T I   YD +  +  +VDVGG +G                  DL 
Sbjct: 144 ASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQ 202

Query: 179 EVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYK 230
              + A               + G  F  +PA A    +  VL  W D     I+  C +
Sbjct: 203 GPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSAVAILRRCAE 262

Query: 231 AIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
           A  +GG ++  E V  D+        A    D+ ++T +   GK  +  E  +L   AG 
Sbjct: 263 AAGSGGVVLVIEAVAGDE-------HAGTGMDLRMLTYFG--GKERSLAELGELAAQAGL 313

Query: 291 PHLRLYRV 298
               +   
Sbjct: 314 ---AVRAA 318

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358

 Score =  254 bits (649), Expect = 3e-83
 Identities = 87/313 (27%), Positives = 140/313 (44%), Gaps = 34/313 (10%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG------GERKYSLTE 69
              P++ S++ +  L         L R LRLLT+ G F++    G       E  YSLT 
Sbjct: 42  HGKPMTLSELASS-LKLHPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTP 100

Query: 70  IGKSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAIL-DPTIEPFVKVHGEPTYSYYGK 128
             K L++       +  V      + +  W    +    D     F    GE  + +  K
Sbjct: 101 PSKLLISGKPT-CLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNK 159

Query: 129 MPEMNGLMR--KAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG-------------- 172
             E + L     AM+  S  F   + +    F+G++ LVDVGG  G              
Sbjct: 160 DSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLK 219

Query: 173 -INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKA 231
              FD P+VV        +  +GGDMFKSIP+ADA+ +KWVL  W D++   I++N  +A
Sbjct: 220 CTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEA 279

Query: 232 IPA---GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA 288
           I      GK+I  +  + + S++   T   L+ D+ ++T++   GK  T+QE+++L + A
Sbjct: 280 ISHKGKDGKVIIIDISIDETSDDRGLTELQLDYDLVMLTMFL--GKERTKQEWEKLIYDA 337

Query: 289 GFPHLRLYRVLDC 301
           GF     Y++   
Sbjct: 338 GF---SSYKITPI 347

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374

 Score =  251 bits (644), Expect = 3e-82
 Identities = 62/308 (20%), Positives = 103/308 (33%), Gaps = 35/308 (11%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            L     + + +  R         + L R++R LT  GV     +    R    T +G  
Sbjct: 44  HLLAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGEK--QGRPLRPTRLGML 97

Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN 133
           L      Q  A   L         A+  + + +       +   +G P +        + 
Sbjct: 98  LADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALA 156

Query: 134 GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP 178
                 MS        +  D YD +  V+ ++DVGG  G                  +L 
Sbjct: 157 DSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELA 215

Query: 179 EVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYK 230
                A            VT   GD FK +P  AD + + +VL  W+D++   I+  C +
Sbjct: 216 GPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVR 275

Query: 231 AIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
           A+  GG+L+  +    +     +    LL  D+ ++T     G+  T  E   L  SAG 
Sbjct: 276 ALEPGGRLLVLDRADVEGDGADRFFSTLL--DLRMLTFMG--GRVRTRDEVVDLAGSAGL 331

Query: 291 PHLRLYRV 298
                   
Sbjct: 332 ALASERTS 339

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334

 Score =  243 bits (623), Expect = 1e-79
 Identities = 71/311 (22%), Positives = 120/311 (38%), Gaps = 47/311 (15%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            + +   S   +   +    G DAE + R++RLL  + +F           Y+ T     
Sbjct: 36  LIESGIDSDETLAAAV----GSDAERIHRLMRLLVAFEIFQGD----TRDGYANTPTSH- 86

Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMN 133
           L+ D EG S+   VL  + +   +AW    EA+L  T   F    GE  YSY  + P+  
Sbjct: 87  LLRDVEG-SFRDMVL-FYGEEFHAAWTPACEALLSGTP-GFELAFGEDFYSYLKRCPDAG 143

Query: 134 GLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP 178
                AM   ++ F   I    D F+G +  VDVGG +G               +  D  
Sbjct: 144 RRFLLAMKASNLAFH-EIPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDRE 200

Query: 179 EVVAEAPSI-------PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYK 230
             +  A            V+ +GGDM + +P+  D   +  ++    +     ++ NC +
Sbjct: 201 GSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAASLRLLGNCRE 260

Query: 231 AIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
           A+   G+++  E  +     E      L   D+ +       G+H T +E   L    GF
Sbjct: 261 AMAGDGRVVVIERTISAS--EPSPMSVLW--DVHLFMA--CAGRHRTTEEVVDLLGRGGF 314

Query: 291 PHLRLYRVLDC 301
               + R++D 
Sbjct: 315 ---AVERIVDL 322

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359

 Score =  203 bits (517), Expect = 3e-63
 Identities = 50/312 (16%), Positives = 107/312 (34%), Gaps = 45/312 (14%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            +A  P   + +        G     L+ +L  L    V +       + K+SLTE    
Sbjct: 59  HMAEGPKDLATLAADT----GSVPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADY 109

Query: 74  LVTDAEGQS--YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE 131
           + +    +   +   V +         +  + +A+           + +    Y     E
Sbjct: 110 MFSPTPKEPNLHQTPVAKAMAFLADDFYMGLSQAVRGQK-------NFKGQVPYPPVTRE 162

Query: 132 MNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFD 176
            N    +     +   +  +L+      GVK+++DVGG  G                  +
Sbjct: 163 DNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILN 221

Query: 177 LPEVVAEAPSIPG-------VTHIGGDMFK-SIPAADAIFMKWVLTTWTDDECKLIMENC 228
           LP  +               +  I  D++K S P ADA+    +L +  +    ++ +  
Sbjct: 222 LPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLSTIMCKKA 281

Query: 229 YKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA 288
           + A+ +GG+L+  + V+ D  N +    +     I    +  +      +  +K++  S 
Sbjct: 282 FDAMRSGGRLLILDMVIDDPENPNFDYLSHY---ILGAGMPFSVLGFKEQARYKEILESL 338

Query: 289 GFPHLRLYRVLD 300
           G+  + + R  D
Sbjct: 339 GYKDVTMVRKYD 350

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335

 Score =  190 bits (485), Expect = 8e-59
 Identities = 44/314 (14%), Positives = 89/314 (28%), Gaps = 51/314 (16%)

Query: 14  RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
            ++    S+  +  +           ++ +   L   G  ++         Y LT     
Sbjct: 34  AISQGIESSQSLAQKC----QTSERGMRMLCDYLVIIGFMTKQ-----AEGYRLTSDSAM 84

Query: 74  LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKM---P 130
            +           +       + + +  +  A+L           G    S  G +    
Sbjct: 85  FLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLK----------GGTAISSEGTLSPEH 134

Query: 131 EMNGLMRKAMSGVSVPFMTSILDGYD-GFKGVKRLVDVGGSAG---------------IN 174
            +     KAMS +       I    +       +++D+  S G                 
Sbjct: 135 PVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFG 194

Query: 175 FDLPEVVAEAPSIPG-------VTHIGGDMFKS--IPAADAIFMKWVLTTWTDDECKLIM 225
            D   V+  A               I G  F+       D + +   L  +    C+ ++
Sbjct: 195 VDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQLL 254

Query: 226 ENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG 285
                A+   GK+I  + +   D        A     + VM      G   T  E++ + 
Sbjct: 255 RKIKTALAVEGKVIVFDFIPNSDRITPPDAAAF---SL-VMLATTPNGDAYTFAEYESMF 310

Query: 286 FSAGFPHLRLYRVL 299
            +AGF H +L+ + 
Sbjct: 311 SNAGFSHSQLHSLP 324

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352

 Score =  184 bits (469), Expect = 3e-56
 Identities = 43/298 (14%), Positives = 85/298 (28%), Gaps = 48/298 (16%)

Query: 19  PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA 78
             + +++        G        +L  L   G+ ++  +      +  T + +  +T  
Sbjct: 56  GRTPAEVAASF----GMVEGKAAILLHALAALGLLTKEGD-----AFRNTALTERYLTTT 106

Query: 79  EGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRK 138
                 P V   HQ      WP + E +         K       S +            
Sbjct: 107 SADYIGPIVE--HQYLQWDNWPRLGEILRSE------KPLAFQQESRFAHDTRARDAFND 158

Query: 139 AMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE 183
           AM  +S P +  + +    F   + ++D+ G  G                 +DLP     
Sbjct: 159 AMVRLSQPMVDVVSELGV-FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDA 217

Query: 184 APSIPG-------VTHIGGDMFKSIPA----ADAIFMKWVLTTWTDDECKLIMENCYKAI 232
           A            V     ++  +       AD + +   L  +   E + ++ +    +
Sbjct: 218 ARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREAREVIGHAAGLV 277

Query: 233 PAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF 290
             GG L+     + DD      + A     + V T     G+         +   AG 
Sbjct: 278 KPGGALLILTMTMNDDRVTPALS-ADFSLHMMVNT---NHGELHPTPWIAGVVRDAGL 331

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363

 Score =  173 bits (440), Expect = 8e-52
 Identities = 51/314 (16%), Positives = 98/314 (31%), Gaps = 48/314 (15%)

Query: 16  ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV 75
                +  +I  R     G      Q +L      G      +     +Y L + G  L+
Sbjct: 47  KREGYTLQEISGRT----GLTRYAAQVLLEASLTIGTILLEED-----RYVLAKAGWFLL 97

Query: 76  TDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG--EPTYSYYGKMPE-M 132
            D      A   ++ + D        + EA+L+      +KV G     Y    ++PE +
Sbjct: 98  ND----KMARVNMEFNHDVNYQGLFHLEEALLNGRP-EGLKVFGEWPTIYEGLSQLPEQV 152

Query: 133 NGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL 177
                      S       L+        KRL+D+GG+ G                  DL
Sbjct: 153 QKSWFGFDHFYSDQSFGKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL 211

Query: 178 PEVVAEAPSIPG-------VTHIGGDMFK---SIPA-ADAIFMKWVLTTWTDDECKLIME 226
           P+ +               +   G ++       P   DA++M   L  ++++E   I+ 
Sbjct: 212 PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVISILT 271

Query: 227 NCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF 286
              ++I    K+   E +      E+     L +  ++   +     K     +  +   
Sbjct: 272 RVAQSIGKDSKVYIMETLWDRQRYETASY-CLTQISLYFTAMANGNSKMFHSDDLIRCIE 330

Query: 287 SAGFPHLRLYRVLD 300
           +AG     +  + D
Sbjct: 331 NAGL---EVEEIQD 341

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 26/196 (13%), Positives = 59/196 (30%), Gaps = 29/196 (14%)

Query: 125 YYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG------------ 172
             G    ++ +   +    S  F+   L       G    +D G   G            
Sbjct: 48  MLGGYGHISSIDINS----SRKFLQRFLREGPNKTGTSCALDCGAGIGRITKRLLLPLFR 103

Query: 173 --INFDL-PEVVAEAPSIPG------VTHIGGDMFKSIPAA---DAIFMKWVLTTWTDDE 220
                D+  + + +A +  G        +    +    P     D I+++WV+   TD  
Sbjct: 104 EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQH 163

Query: 221 CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQE 280
               +  C  ++   G ++  + +  +         ++      V  I  + G  +  +E
Sbjct: 164 LAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSAGLSLLAEE 223

Query: 281 FKQLGFSAGFPHLRLY 296
            +Q        H+  +
Sbjct: 224 -RQENLPDEIYHVYSF 238

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 21/119 (17%), Positives = 41/119 (34%), Gaps = 5/119 (4%)

Query: 182 AEAPSIPGVTHIGGDMFKSIPAA---DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKL 238
            E   +P    I   M  +       D I ++W     TD +     ++C +A+   G +
Sbjct: 134 RELAGMPVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYI 193

Query: 239 IACEPVLPDDSNESQRT-RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY 296
              E     D     +   +L   DI    ++   G  + ++   Q  +      L++Y
Sbjct: 194 FFKENCSTGDRFLVDKEDSSLTRSDIHYKRLFNESGVRVVKEA-FQEEWPTDLFPLKMY 251

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	301
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	100.0
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	100.0
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	100.0
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	100.0
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	100.0
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	100.0
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	100.0
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	100.0
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	100.0
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	100.0
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	100.0
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	100.0
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	100.0
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	100.0
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	100.0
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	100.0
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.67
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.56
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.53
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.53
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.51
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.51
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.5
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.49
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.48
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.48
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.48
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.47
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.46
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.46
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.46
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.45
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.45
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.44
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.44
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.43
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.43
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.43
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.42
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.42
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.42
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.4
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.4
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.39
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.38
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.38
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.38
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.37
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.37
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.37
3ocj_A	305	Putative exported protein; structural genomics, PS	99.37
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.35
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.35
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.34
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.33
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.33
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.33
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.33
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.31
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.3
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.28
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.28
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.27
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.25
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.24
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.24
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.24
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.23
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.22
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.22
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.22
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.22
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.21
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.21
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.21
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.2
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.19
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	99.17
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.15
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.15
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.15
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.14
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.13
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.12
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.11
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.1
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.07
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.04
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.04
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.02
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.01
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.01
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.99
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.96
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.94
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.94
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.88
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.87
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.86
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.84
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.83
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.82
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.82
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.82
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.8
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.8
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.78
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.76
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	98.74
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.73
2b3t_A	276	Protein methyltransferase HEMK; translation termin	98.71
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	98.71
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	98.7
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.69
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.69
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.69
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.69
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.64
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	98.64
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.62
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.62
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	98.6
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.59
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.59
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.57
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.56
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.56
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.55
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	98.55
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.55
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.54
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.53
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.53
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.52
3lpm_A	259	Putative methyltransferase; structural genomics, p	98.51
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.5
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	98.5
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.49
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.49
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.47
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.47
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.46
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.45
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.41
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	98.41
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.4
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.39
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	98.39
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.36
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.35
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	98.35
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.34
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.33
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.33
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.32
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.32
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.32
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.31
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.3
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.3
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.28
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	98.28
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.28
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.28
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.27
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.26
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.25
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.24
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.22
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.21
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.2
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.2
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.19
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.19
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.19
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.19
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.18
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.18
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	98.18
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.18
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	98.18
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.16
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	98.16
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.16
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.15
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.14
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.14
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.14
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.13
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.09
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.09
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.08
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.08
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.08
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.08
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	98.07
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.06
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.06
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.04
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	98.03
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.02
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.01
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.0
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.0
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	97.99
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	97.99
2b25_A	336	Hypothetical protein; structural genomics, methyl	97.97
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	97.97
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	97.95
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.95
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	97.94
2pt6_A	321	Spermidine synthase; transferase, structural genom	97.94
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.92
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	97.92
2o07_A	304	Spermidine synthase; structural genomics, structur	97.92
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	97.91
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	97.9
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	97.88
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.87
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	97.86
3k6r_A	278	Putative transferase PH0793; structural genomics,	97.84
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	97.83
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	97.78
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.74
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	97.73
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	97.72
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	97.71
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	97.71
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	97.68
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	97.67
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	97.66
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	97.65
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	97.62
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	97.6
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	97.58
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	97.54
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	97.54
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	97.47
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.44
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.36
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	97.35
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	97.32
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.31
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	97.29
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	97.28
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	97.28
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	97.27
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.26
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	97.25
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	97.24
3b73_A	111	PHIH1 repressor-like protein; winged-helix-turn-he	97.12
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	97.11
1y0u_A	96	Arsenical resistance operon repressor, putative; s	97.11
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	96.9
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	96.87
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	96.85
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	96.84
2heo_A	67	Z-DNA binding protein 1; protein DLM1-Z-DNA comple	96.82
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	96.81
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	96.78
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	96.77
3pqk_A	102	Biofilm growth-associated repressor; helix-turn-he	96.76
1xmk_A	79	Double-stranded RNA-specific adenosine deaminase;	96.75
3jth_A	98	Transcription activator HLYU; transcription factor	96.72
1r7j_A	95	Conserved hypothetical protein SSO10A; winged heli	96.71
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	96.64
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	96.64
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	96.63
3df8_A	111	Possible HXLR family transcriptional factor; APC89	96.59
2hzt_A	107	Putative HTH-type transcriptional regulator YTCD;	96.58
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.57
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	96.51
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	96.46
3iei_A	334	Leucine carboxyl methyltransferase 1; LCMT-1, S-ad	96.44
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	96.4
4a5n_A	131	Uncharacterized HTH-type transcriptional regulato;	96.38
3mq0_A	275	Transcriptional repressor of the blcabc operon; he	96.38
3r4k_A	260	Transcriptional regulator, ICLR family; DNA/RNA-bi	96.35
2kko_A	108	Possible transcriptional regulatory protein (possi	96.34
1qgp_A	77	Protein (double stranded RNA adenosine deaminase);	96.27
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	96.27
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	96.25
1qbj_A	81	Protein (double-stranded RNA specific adenosine D	96.19
3f6o_A	118	Probable transcriptional regulator, ARSR family pr	96.18
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.13
2g7u_A	257	Transcriptional regulator; ICLR family, structural	96.06
2oqg_A	114	Possible transcriptional regulator, ARSR family P;	96.06
2f2e_A	146	PA1607; transcription factor, helix-TRUN-helix, AP	96.02
2o0y_A	260	Transcriptional regulator; ICLR-family, structural	96.01
2jsc_A	118	Transcriptional regulator RV1994C/MT2050; cadmium,	96.0
1oyi_A	82	Double-stranded RNA-binding protein; (alpha+beta)	95.96
1yyv_A	131	Putative transcriptional regulator; reductive meth	95.93
1r1u_A	106	CZRA, repressor protein; zinc, DNA binding, transc	95.91
1r1t_A	122	Transcriptional repressor SMTB; zinc, transcriptio	95.87
2fsw_A	107	PG_0823 protein; alpha-beta structure, helix-turn-	95.87
2ia2_A	265	Putative transcriptional regulator; SAD, PSI-2, st	95.87
3cuo_A	99	Uncharacterized HTH-type transcriptional regulato;	95.86
1u2w_A	122	CADC repressor, cadmium efflux system accessory pr	95.81
3f6v_A	151	Possible transcriptional regulator, ARSR family pr	95.8
2xrn_A	241	HTH-type transcriptional regulator TTGV; DNA-bindi	95.75
2fu4_A	83	Ferric uptake regulation protein; DNA binding doma	95.72
1z7u_A	112	Hypothetical protein EF0647; winged-helix-turn-hel	95.63
2wte_A	244	CSA3; antiviral protein, viral resistance, winged	95.5
2htj_A	81	P fimbrial regulatory protein KS71A; winged helix-	95.47
1mkm_A	249	ICLR transcriptional regulator; structural genomic	95.46
1tbx_A	99	ORF F-93, hypothetical 11.0 kDa protein; sulfolobu	95.45
1on2_A	142	Transcriptional regulator MNTR; helix-turn-helix,	95.4
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	95.39
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.37
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	95.35
2y75_A	129	HTH-type transcriptional regulator CYMR; DNA bindi	95.2
1ub9_A	100	Hypothetical protein PH1061; helix-turn-helix moti	95.14
3lwf_A	159	LIN1550 protein, putative transcriptional regulato	95.06
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	94.98
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	94.94
2x4h_A	139	Hypothetical protein SSO2273; transcription; 2.30A	94.83
1ylf_A	149	RRF2 family protein; structural genomics, transcri	94.75
3t8r_A	143	Staphylococcus aureus CYMR; transcriptional regula	94.75
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	94.75
3tgn_A	146	ADC operon repressor ADCR; helix-turn-helix, trans	94.68
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	94.68
2obp_A	96	Putative DNA-binding protein; structural genomics,	94.61
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	94.61
2gxg_A	146	146AA long hypothetical transcriptional regulator;	94.57
3cdh_A	155	Transcriptional regulator, MARR family; helix-turn	94.55
3k69_A	162	Putative transcription regulator; putative transcr	94.54
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	94.51
3ech_A	142	MEXR, multidrug resistance operon repressor; winge	94.5
3hsr_A	140	HTH-type transcriptional regulator SARZ; helix-tur	94.25
3hrs_A	214	Metalloregulator SCAR; DTXR/MNTR family member, tr	94.24
3k0l_A	162	Repressor protein; helix-turn-helix, structural ge	94.21
2fbh_A	146	Transcriptional regulator PA3341; MARR, transcript	94.19
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	94.14
2pg4_A	95	Uncharacterized protein; structural genomics, join	94.13
3g3z_A	145	NMB1585, transcriptional regulator, MARR family; t	94.08
2jt1_A	77	PEFI protein; solution structure, winged helix-tur	94.06
3bdd_A	142	Regulatory protein MARR; putative multiple antibio	94.01
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	93.99
3bj6_A	152	Transcriptional regulator, MARR family; helix-turn	93.99
3bja_A	139	Transcriptional regulator, MARR family, putative;	93.96
3kp7_A	151	Transcriptional regulator TCAR; multiple drug resi	93.95
3oop_A	143	LIN2960 protein; protein structure initiative, PSI	93.93
2a61_A	145	Transcriptional regulator TM0710; APC4350, MCSG, m	93.9
1jgs_A	138	Multiple antibiotic resistance protein MARR; trans	93.87
2nnn_A	140	Probable transcriptional regulator; structural gen	93.85
2fa5_A	162	Transcriptional regulator MARR/EMRR family; multip	93.82
2bv6_A	142	MGRA, HTH-type transcriptional regulator MGRA; mul	93.73
1sfu_A	75	34L protein; protein/Z-DNA complex, DNA binding pr	93.7
3bpv_A	138	Transcriptional regulator; MARR, DNA binding, tran	93.69
2pex_A	153	Transcriptional regulator OHRR; transcription regu	93.68
1xd7_A	145	YWNA; structural genomics, protein structure initi	93.68
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	93.66
2lkp_A	119	Transcriptional regulator, ARSR family; symmetric	93.65
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	93.65
2qvo_A	95	Uncharacterized protein AF_1382; PSI, structural g	93.65
4g6q_A	182	Putative uncharacterized protein; structural genom	93.64
3s2w_A	159	Transcriptional regulator, MARR family; structural	93.59
3boq_A	160	Transcriptional regulator, MARR family; MARR famil	93.55
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	93.51
1p6r_A	82	Penicillinase repressor; transcription regulation,	93.51
3nrv_A	148	Putative transcriptional regulator (MARR/EMRR FAM;	93.48
3ll7_A	410	Putative methyltransferase; methytransferase, stru	93.38
3bro_A	141	Transcriptional regulator; helix_TURN_helix, multi	93.37
3fm5_A	150	Transcriptional regulator; MCSG, PF04017, PSI, MAR	93.35
2rdp_A	150	Putative transcriptional regulator MARR; PFAM PF01	93.32
1lj9_A	144	Transcriptional regulator SLYA; HTH DNA binding pr	93.18
2h09_A	155	Transcriptional regulator MNTR; transcription regu	93.13
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	93.08
2eth_A	154	Transcriptional regulator, putative, MAR family; M	93.07
2zkz_A	99	Transcriptional repressor PAGR; protein-DNA, HTH m	93.06
1sfx_A	109	Conserved hypothetical protein AF2008; structural	93.06
4hbl_A	149	Transcriptional regulator, MARR family; HTH, trans	92.97
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	92.95
3e6m_A	161	MARR family transcriptional regulator; APC88769, s	92.89
3cjn_A	162	Transcriptional regulator, MARR family; silicibact	92.88
2nyx_A	168	Probable transcriptional regulatory protein, RV14;	92.87
2qww_A	154	Transcriptional regulator, MARR family; YP_013417.	92.87
3f3x_A	144	Transcriptional regulator, MARR family, putative;	92.86
2k4b_A	99	Transcriptional regulator; DNA binding protein, wi	92.73
1s3j_A	155	YUSO protein; structural genomics, MARR transcript	92.69
2hr3_A	147	Probable transcriptional regulator; MCSG, structur	92.64
2fbi_A	142	Probable transcriptional regulator; MARR, APC5816,	92.63
2p4w_A	202	Transcriptional regulatory protein ARSR family; ar	92.53
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	92.37
1z91_A	147	Organic hydroperoxide resistance transcriptional;	92.37
1bja_A	95	Transcription regulatory protein MOTA; activation	92.37
2fxa_A	207	Protease production regulatory protein HPR; protea	92.23
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	92.15
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	91.95
2pn6_A	150	ST1022, 150AA long hypothetical transcriptional re	91.95
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	91.87
3nqo_A	189	MARR-family transcriptional regulator; structural	91.74
3eco_A	139	MEPR; mutlidrug efflux pump regulator winged helix	91.62
1ku9_A	152	Hypothetical protein MJ223; putative transcription	91.57
3jw4_A	148	Transcriptional regulator, MARR/EMRR family; DNA-b	91.43
2frh_A	127	SARA, staphylococcal accessory regulator A; winged	91.31
1uly_A	192	Hypothetical protein PH1932; helix-turn-helix, str	91.25
1okr_A	123	MECI, methicillin resistance regulatory protein ME	91.23
2d1h_A	109	ST1889, 109AA long hypothetical transcriptional re	91.09
1q1h_A	110	TFE, transcription factor E, TFE; TFIIE, transcrip	91.07
3r0a_A	123	Putative transcriptional regulator; structural gen	91.05
2lnb_A	80	Z-DNA-binding protein 1; structural genomics, nort	90.87
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	90.84
2cfx_A	144	HTH-type transcriptional regulator LRPC; transcrip	90.81
4b8x_A	147	SCO5413, possible MARR-transcriptional regulator;	90.67
2w25_A	150	Probable transcriptional regulatory protein; trans	90.6
3u2r_A	168	Regulatory protein MARR; structural genomics, PSI-	90.55
3deu_A	166	Transcriptional regulator SLYA; MARR, WING-helix,	90.54
2fe3_A	145	Peroxide operon regulator; oxidative stress regula	90.49
3i4p_A	162	Transcriptional regulator, ASNC family; PSI, struc	90.36
4aik_A	151	Transcriptional regulator SLYA; transcription, tra	90.21
2p5v_A	162	Transcriptional regulator, LRP/ASNC family; NMB057	89.91
2esh_A	118	Conserved hypothetical protein TM0937; APC5794, st	89.69
2fbk_A	181	Transcriptional regulator, MARR family; winged-hel	89.58
2dbb_A	151	Putative HTH-type transcriptional regulator PH006;	89.39
4fx0_A	148	Probable transcriptional repressor protein; helix-	89.25
2cyy_A	151	Putative HTH-type transcriptional regulator PH151;	88.93
2vxz_A	165	Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Py	88.83
1mzb_A	136	Ferric uptake regulation protein; ferric uptake re	88.82
2e1c_A	171	Putative HTH-type transcriptional regulator PH151;	88.6
3u1d_A	151	Uncharacterized protein; GNTR-superfamily, structu	88.58
2cg4_A	152	Regulatory protein ASNC; DNA binding, FFRP, LRP fa	88.56
2p8t_A	200	Hypothetical protein PH0730; pyrococcus horikoshii	88.52
2ia0_A	171	Putative HTH-type transcriptional regulator PF086;	88.4
2pjp_A	121	Selenocysteine-specific elongation factor; SELB, p	88.28
3lkd_A	542	Type I restriction-modification system methyltrans	88.28
2o03_A	131	Probable zinc uptake regulation protein FURB; DNA-	88.2
1i1g_A	141	Transcriptional regulator LRPA; helix-turn-helix,	87.98
2vn2_A	128	DNAD, chromosome replication initiation protein; D	87.92
1xma_A	145	Predicted transcriptional regulator; southea colla	87.7
3mwm_A	139	ZUR, putative metal uptake regulation protein; FUR	87.64
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	87.64
3cvo_A	202	Methyltransferase-like protein of unknown functio;	87.28
3l7w_A	108	Putative uncharacterized protein SMU.1704; PADR, t	87.26
1fx7_A	230	Iron-dependent repressor IDER; DTXR, iron-dependen	87.07
1yg2_A	179	Gene activator APHA; virulence factor, winged heli	86.88
1v4r_A	102	Transcriptional repressor; helix-turn-helix, winge	86.69
3maj_A	382	DNA processing chain A; MCSG, PSI-2, structural ge	86.6
3khk_A	544	Type I restriction-modification system methylation	86.47
3i71_A	68	Ethanolamine utilization protein EUTK; helix-turn-	86.04
3hhh_A	116	Transcriptional regulator, PADR family; PF03551, s	86.03
2qq9_A	226	Diphtheria toxin repressor; regulator, DTXR, helix	86.01
3elk_A	117	Putative transcriptional regulator TA0346; structu	85.72
2w57_A	150	Ferric uptake regulation protein; gene regulation,	85.44
2dk5_A	91	DNA-directed RNA polymerase III 39 kDa polypeptide	85.33
3f8b_A	116	Transcriptional regulator, PADR-like family; winge	85.22
2g9w_A	138	Conserved hypothetical protein; DNA-binding domain	85.04
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	84.98
4esf_A	117	PADR-like transcriptional regulator; PADR family,	84.91
1j5y_A	187	Transcriptional regulator, biotin repressor famil;	84.83
3cta_A	230	Riboflavin kinase; structural genomics, transferas	84.42
3k2z_A	196	LEXA repressor; winged helix-turn-helix, SOS syste	84.42
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	84.35
2xig_A	150	Ferric uptake regulation protein; hpfur, transcrip	84.25
1jhg_A	101	Trp operon repressor; complex (regulatory protein-	84.1
4esb_A	115	Transcriptional regulator, PADR family; DNA bindin	83.43
1sd4_A	126	Penicillinase repressor; BLAI, MECI, methicillin,	83.06
2o0m_A	345	Transcriptional regulator, SORC family; structural	82.87
1p4x_A	250	Staphylococcal accessory regulator A homologue; wi	82.64
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	82.52
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	82.37
2b0l_A	102	GTP-sensing transcriptional pleiotropic repressor;	82.37
2v79_A	135	DNA replication protein DNAD; primosome, DNA-bindi	81.79
1bia_A	321	BIRA bifunctional protein; transcription regulatio	81.65
2qlz_A	232	Transcription factor PF0095; 2.50A {Pyrococcus fur	80.53

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=100.00  E-value=2.6e-51  Score=372.13  Aligned_cols=285  Identities=21%  Similarity=0.332  Sum_probs=247.2

Q ss_pred             CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCC
Q 043063            3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEG   80 (301)
Q Consensus         3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~   80 (301)
                      +++|+||||||.|.+  +|+|++|||+++|+    +++.++||||+|+++|+|.+..++ .++.|++|+.++.+....++
T Consensus        25 L~aa~eLglfd~L~~~~~p~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~~~~-~~~~y~~t~~s~~~l~~~~~   99 (353)
T 4a6d_A           25 LFAACELGVFDLLAEAPGPLDVAAVAAGVRA----SAHGTELLLDICVSLKLLKVETRG-GKAFYRNTELSSDYLTTVSP   99 (353)
T ss_dssp             HHHHHHHTHHHHHHHSSSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHSTTST
T ss_pred             HHHHHHcCHHHHHhcCCCCCCHHHHHHhhCc----CHHHHHHHHHHHHHCCCEEEeccC-ccceeeCCHHHHHHhhcCCc
Confidence            578999999999964  79999999999999    899999999999999999865311 34589999999765544444


Q ss_pred             CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccC---CCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCC
Q 043063           81 QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG---EPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDG  157 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g---~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~  157 (301)
                      .++.+++.+.. +..++.|.+|.+++++|+ ++|...+|   .++|+++.++++....|+++|...+....+.+++.++ 
T Consensus       100 ~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~-  176 (353)
T 4a6d_A          100 TSQCSMLKYMG-RTSYRCWGHLADAVREGR-NQYLETFGVPAEELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFD-  176 (353)
T ss_dssp             TCCHHHHHHHH-HTHHHHHTTHHHHHHHTS-CCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSC-
T ss_pred             hHHHHHHHHhC-HHHHHHHHHHHHHHhcCC-ChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            68888887764 457889999999999998 78888876   4688888889999999999999988888889999997 


Q ss_pred             CCCcceEEeecCCce---------------eeeehhHHHhhCCC------CCceeEEeCCCCcc-CCcccEeeHhhhhcc
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS------IPGVTHIGGDMFKS-IPAADAIFMKWVLTT  215 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~------~~ri~~~~gd~~~~-~p~~D~v~~~~vlh~  215 (301)
                      |++..+|||||||+|               +++|+|++++.+++      .+||+|++||||++ .|.+|+|+++++||+
T Consensus       177 ~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~~~D~~~~~~vlh~  256 (353)
T 4a6d_A          177 LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLPEADLYILARVLHD  256 (353)
T ss_dssp             GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCCCCCSEEEEESSGGG
T ss_pred             cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCCCCceEEEeeeeccc
Confidence            999999999999994               78999999988753      48999999999987 667899999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      |+|+++.+||++++++|+|||+|+|+|.+.+++.. .|.  ....+|+.|++  ..+|++||.+||+++|+++||+.+++
T Consensus       257 ~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~-~~~--~~~~~dl~ml~--~~~g~ert~~e~~~ll~~AGf~~v~v  331 (353)
T 4a6d_A          257 WADGKCSHLLERIYHTCKPGGGILVIESLLDEDRR-GPL--LTQLYSLNMLV--QTEGQERTPTHYHMLLSSAGFRDFQF  331 (353)
T ss_dssp             SCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSC-CCH--HHHHHHHHHHH--SSSCCCCCHHHHHHHHHHHTCEEEEE
T ss_pred             CCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCC-CCH--HHHHHHHHHHH--hCCCcCCCHHHHHHHHHHCCCceEEE
Confidence            99999999999999999999999999999987643 222  34568999997  77999999999999999999999999


Q ss_pred             EEccC
Q 043063          296 YRVLD  300 (301)
Q Consensus       296 ~~~~~  300 (301)
                      +++..
T Consensus       332 ~~~~~  336 (353)
T 4a6d_A          332 KKTGA  336 (353)
T ss_dssp             ECCSS
T ss_pred             EEcCC
Confidence            98753

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=100.00  E-value=3.3e-49  Score=359.74  Aligned_cols=293  Identities=34%  Similarity=0.669  Sum_probs=254.2

Q ss_pred             CccccccccccccCC---CCCCHHHHHHHhCC-CCCCCcc---cHHHHHHHHhcCcceeccccccC----CCeEecChhc
Q 043063            3 DNECRDGGKKGRLAN---TPLSASQILTRILP-SGGGDAE---NLQRILRLLTNYGVFSEHREFGG----ERKYSLTEIG   71 (301)
Q Consensus         3 ~~~a~~lglf~~L~~---g~~t~~ela~~~~~-~~~~~~~---~l~~lL~~L~~~g~l~~~~~~~~----~~~y~~t~~s   71 (301)
                      +++|++||||+.|.+   +|+|++|||+++|+ +   +++   .|+||||+|+++|+|++....++    +++|++|+.+
T Consensus        37 l~~a~~Lgifd~L~~~g~~~~t~~eLA~~~g~~~---~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~~~~~y~~t~~s  113 (364)
T 3p9c_A           37 LKNAIELGLLEILVAAGGKSLTPTEVAAKLPSAA---NPEAPDMVDRILRLLASYNVVTCLVEEGKDGRLSRSYGAAPVC  113 (364)
T ss_dssp             HHHHHHHTHHHHHHHTTTCCBCHHHHHHTTTCTT---CTTHHHHHHHHHHHHHHTTSEEEEEEECSSSCEEEEEEECGGG
T ss_pred             HHHHHHCChHHHHhhcCCCCCCHHHHHHhcCCCC---CccchhhHHHHHHHHHhCCCEEEeccccCCCCcCCEEecCHHH
Confidence            578999999999975   69999999999995 3   455   99999999999999998621000    3689999999


Q ss_pred             hhhhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHh
Q 043063           72 KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSI  151 (301)
Q Consensus        72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~  151 (301)
                      +.|+.+.++.++++++.+..++.+++.|.+|.+++++|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+
T Consensus       114 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~  192 (364)
T 3p9c_A          114 KFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGG-IPFNKAYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKL  192 (364)
T ss_dssp             GGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCC-ChHHHhcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHH
Confidence            988877655689999887766778999999999999998 8999999999999999999999999999998877777788


Q ss_pred             hhcCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccC
Q 043063          152 LDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTW  216 (301)
Q Consensus       152 ~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~  216 (301)
                      ++.++.+++..+|||||||+|               +++|+|.+++.+++.+||+|+.+|+++++|.+|+|+++++||+|
T Consensus       193 ~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~v~~~~vlh~~  272 (364)
T 3p9c_A          193 LELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDW  272 (364)
T ss_dssp             HHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGS
T ss_pred             HHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCEEEehHHhccC
Confidence            888855888899999999994               78999999999998899999999999888878999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      +|+++.++|++++++|+|||+|+|.|.+.++.....+.......+|+.|++ ...+|++||.+||.++|+++||+.++++
T Consensus       273 ~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~  351 (364)
T 3p9c_A          273 SDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKST  351 (364)
T ss_dssp             CHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHHTTCCEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHHCCCceEEEE
Confidence            999999999999999999999999999988764323333344568888884 3578999999999999999999999999


Q ss_pred             EccC
Q 043063          297 RVLD  300 (301)
Q Consensus       297 ~~~~  300 (301)
                      ++..
T Consensus       352 ~~~~  355 (364)
T 3p9c_A          352 YIYA  355 (364)
T ss_dssp             EEET
T ss_pred             EcCC
Confidence            8764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=100.00  E-value=4.8e-48  Score=352.62  Aligned_cols=296  Identities=34%  Similarity=0.644  Sum_probs=253.3

Q ss_pred             CccccccccccccCC--C---CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc-C---CCeEecChhchh
Q 043063            3 DNECRDGGKKGRLAN--T---PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG-G---ERKYSLTEIGKS   73 (301)
Q Consensus         3 ~~~a~~lglf~~L~~--g---~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~---~~~y~~t~~s~~   73 (301)
                      +++|++||||+.|.+  |   |+|++|||+++|..+|.+++.|+||||+|++.|+|++....+ .   +++|++|+.++.
T Consensus        38 l~~a~~Lglfd~L~~~~gp~~~~t~~eLA~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s~~  117 (368)
T 3reo_A           38 LKAAIELDVLEIMAKSVPPSGYISPAEIAAQLPTTNPEAPVMLDRVLRLLASYSVVTYTLRELPSGKVERLYGLAPVCKF  117 (368)
T ss_dssp             HHHHHHTTHHHHHHHHCCTTCCBCHHHHHTTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTHHH
T ss_pred             HHHHHHCCchhHHhhcCCCCCCcCHHHHHHhcCcCCCcchhhHHHHHHHHHhCCCeEEecccCCCCcccceeCcCHHHHH
Confidence            578999999999975  4   599999999998422212349999999999999999862100 1   368999999998


Q ss_pred             hhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhh
Q 043063           74 LVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILD  153 (301)
Q Consensus        74 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~  153 (301)
                      |+.+..+.++++++.+..++.+++.|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++
T Consensus       118 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~  196 (368)
T 3reo_A          118 LTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGG-IPFNKAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILE  196 (368)
T ss_dssp             HSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCS-CHHHHHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCC-CHHHHHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            8877655689999887766778899999999999998 899999999999999999999999999999887777788888


Q ss_pred             cCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCCh
Q 043063          154 GYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD  218 (301)
Q Consensus       154 ~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d  218 (301)
                      .++.+++..+|||||||+|               +++|+|.+++.+++.+||+|+.+|+++++|.+|+|+++++||+|+|
T Consensus       197 ~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~~  276 (368)
T 3reo_A          197 MYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSD  276 (368)
T ss_dssp             TCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSEEEEESCGGGBCH
T ss_pred             hcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCCCEEEEechhhcCCH
Confidence            8855888899999999994               6889999999999889999999999988887899999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      +++.++|++++++|+|||+|+|.|.+.++.....+.......+|+.|+. ...+|++||.+||+++|+++||+.+++.++
T Consensus       277 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~~  355 (368)
T 3reo_A          277 EHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTEKEFQALAMASGFRGFKVASC  355 (368)
T ss_dssp             HHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCHHHHHHHHHHTTCCEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCHHHHHHHHHHCCCeeeEEEEe
Confidence            9999999999999999999999999988664322333445678888885 235899999999999999999999999987


Q ss_pred             cC
Q 043063          299 LD  300 (301)
Q Consensus       299 ~~  300 (301)
                      ..
T Consensus       356 ~~  357 (368)
T 3reo_A          356 AF  357 (368)
T ss_dssp             ET
T ss_pred             CC
Confidence            64

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=100.00  E-value=9.8e-46  Score=335.09  Aligned_cols=278  Identities=24%  Similarity=0.392  Sum_probs=245.3

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS   82 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~   82 (301)
                      +++|+++|||+.|.+||+|++|||+++|+    +++.++||||+|+++|+|++.     +++|++|+.++.|..+.+ .+
T Consensus        39 l~~a~~lglf~~l~~g~~t~~elA~~~g~----~~~~l~rlLr~l~~~g~l~~~-----~~~y~~t~~s~~l~~~~~-~~  108 (348)
T 3lst_A           39 LRAAAAVGVADHLVDGPRTPAELAAATGT----DADALRRVLRLLAVRDVVRES-----DGRFALTDKGAALRSDSP-VP  108 (348)
T ss_dssp             HHHHHHHTGGGGGTTSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECTTTGGGSTTSS-SC
T ss_pred             HHHHHHcCchhHhhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCCEEec-----CCEEecCHHHHHHhcCCC-cc
Confidence            57899999999999899999999999999    899999999999999999995     789999999998866543 57


Q ss_pred             hhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcc
Q 043063           83 YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVK  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~  162 (301)
                      +.+++.+..++..+++|.+|++++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++.++ +++..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~~  186 (348)
T 3lst_A          109 ARAGILMFTDTMFWTMSHRVASALGPER-PAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGD-FPATG  186 (348)
T ss_dssp             SHHHHHHHTSHHHHHHHHTHHHHTCTTC-CCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSC-CCSSE
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHhcCC-ChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCC-ccCCc
Confidence            8888887666667899999999999998 789989998999999999999999999999888777888999996 99999


Q ss_pred             eEEeecCCce---------------eeeehhHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhhccCChHHHH
Q 043063          163 RLVDVGGSAG---------------INFDLPEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       163 ~vlDvGgG~g---------------~~~Dlp~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~  222 (301)
                      +|||||||+|               +++|+|.++...+.     .+||+++.+|+++++|.+|+|+++++||+|+|+++.
T Consensus       187 ~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v~~~~vlh~~~d~~~~  266 (348)
T 3lst_A          187 TVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSV  266 (348)
T ss_dssp             EEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             eEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEEEEehhccCCCHHHHH
Confidence            9999999995               68899988874321     368999999999778866999999999999999999


Q ss_pred             HHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          223 LIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       223 ~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ++|++++++|+|||+|+|.|.+.++....    .....+|+.|+.  ..+|+.||.+||.++|+++||+.+++.+.
T Consensus       267 ~~L~~~~~~LkpgG~l~i~e~~~~~~~~~----~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  336 (348)
T 3lst_A          267 RILTNCRRVMPAHGRVLVIDAVVPEGNDA----HQSKEMDFMMLA--ARTGQERTAAELEPLFTAAGLRLDRVVGT  336 (348)
T ss_dssp             HHHHHHHHTCCTTCEEEEEECCBCSSSSC----CHHHHHHHHHHH--TTSCCCCBHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHhcCCCCEEEEEEeccCCCCCc----chhhhcChhhhh--cCCCcCCCHHHHHHHHHHCCCceEEEEEC
Confidence            99999999999999999999988765321    123467888886  57899999999999999999999999884

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=100.00  E-value=1.1e-45  Score=337.13  Aligned_cols=278  Identities=23%  Similarity=0.381  Sum_probs=247.1

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCe-EecChhchhhhcCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERK-YSLTEIGKSLVTDAEGQ   81 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~-y~~t~~s~~l~~~~~~~   81 (301)
                      +++|+++|||+.|.+||+|++|||+++|+    +++.++|||++|++.|+|+++    ++++ |++|+.++.|..+.+ .
T Consensus        55 l~~a~~lglf~~l~~g~~t~~eLA~~~g~----~~~~l~rlLr~L~~~g~l~~~----~~~~~y~~t~~s~~L~~~~~-~  125 (369)
T 3gwz_A           55 IHVAVELGVPELLQEGPRTATALAEATGA----HEQTLRRLLRLLATVGVFDDL----GHDDLFAQNALSAVLLPDPA-S  125 (369)
T ss_dssp             HHHHHHHTTGGGGTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSSEEC----SSTTEEECCHHHHTTSCCTT-C
T ss_pred             HHHHHHCChhhhhcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCCEEEe----CCCceEecCHHHHHHhcCCc-h
Confidence            57899999999999899999999999999    899999999999999999997    3778 999999998865543 5


Q ss_pred             ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063           82 SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~  161 (301)
                      ++.+++.+..++..++.|.+|.+++++|. ++|...+|.++|+|+.++++..+.|+++|...+....+.+++.++ +++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~-~~~~  203 (369)
T 3gwz_A          126 PVATDARFQAAPWHWRAWEQLTHSVRTGE-ASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGA  203 (369)
T ss_dssp             HHHHHHHHHHSHHHHHHHHTHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSC-CTTC
T ss_pred             hHHHHHHHcCCHHHHHHHHhHHHHHhCCC-ChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCC-CccC
Confidence            78888887766557889999999999998 789888998999999999999999999999887777788888896 8889


Q ss_pred             ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCCh
Q 043063          162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTD  218 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d  218 (301)
                      .+|||||||+|               +++|+|.+++.+++       .+||+|+.+|+++++|. +|+|+++++||+|+|
T Consensus       204 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~d  283 (369)
T 3gwz_A          204 ATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDD  283 (369)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSEEEEESCGGGSCH
T ss_pred             cEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceEEEhhhhhccCCH
Confidence            99999999995               67899998888764       47999999999977884 799999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      +++.++|++++++|+|||+|+|.|.+.++...  +.   ...+|+.|+.  ..+|++||.+||.++|+++||+++++.++
T Consensus       284 ~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~--~~---~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf~~~~~~~~  356 (369)
T 3gwz_A          284 DDVVRILRRIATAMKPDSRLLVIDNLIDERPA--AS---TLFVDLLLLV--LVGGAERSESEFAALLEKSGLRVERSLPC  356 (369)
T ss_dssp             HHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCC--HH---HHHHHHHHHH--HHSCCCBCHHHHHHHHHTTTEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC--Cc---hhHhhHHHHh--hcCCccCCHHHHHHHHHHCCCeEEEEEEC
Confidence            99999999999999999999999999887632  22   4577888886  67899999999999999999999999984

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=100.00  E-value=4.5e-46  Score=335.17  Aligned_cols=277  Identities=22%  Similarity=0.297  Sum_probs=243.1

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS   82 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~   82 (301)
                      +++|+++|||+.|.+||+|++|||+++|+    +++.++|||++|++.|++.++    +++.|++|+.++.|..+.. .+
T Consensus        22 l~~a~~lglf~~l~~g~~t~~elA~~~~~----~~~~l~rlLr~l~~~gl~~~~----~~~~y~~t~~s~~l~~~~~-~~   92 (332)
T 3i53_A           22 VRVAATLRVADHIAAGHRTAAEIASAAGA----HADSLDRLLRHLVAVGLFTRD----GQGVYGLTEFGEQLRDDHA-AG   92 (332)
T ss_dssp             HHHHHHHTHHHHHHTTCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC----TTSBEEECTTGGGGSTTCT-TC
T ss_pred             HHHHHHcChHHHHhcCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEec----CCCeEEcCHhHHHHhcCCc-hh
Confidence            57899999999999899999999999999    899999999999999999997    4789999999998865543 57


Q ss_pred             hhHHHHhhcchhHH-hhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063           83 YAPYVLQHHQDALM-SAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~  161 (301)
                      +.+++.+..++..+ +.|.+|.+++++|. ++|+..+|.++|+|+.++++..+.|+++|...+....+.+++.++ +++.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~-~~~~  170 (332)
T 3i53_A           93 KRKWLDMNSAVGRGDLGFVELAHSIRTGQ-PAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAAL  170 (332)
T ss_dssp             CHHHHCTTSHHHHHGGGGGGHHHHHHHSS-CSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSC-CGGG
T ss_pred             HHHHHHHcCCHhHHHHHHHHhHHHHhcCC-CHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCC-CCCC
Confidence            88888776554456 89999999999998 789888898899999999999999999999877766778888886 8888


Q ss_pred             ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCC-cccEeeHhhhhccCCh
Q 043063          162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIP-AADAIFMKWVLTTWTD  218 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p-~~D~v~~~~vlh~~~d  218 (301)
                      .+|||||||+|               +++|+|.+++.+++       .+||+|+.+|+++++| .+|+|+++++||+|+|
T Consensus       171 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D~v~~~~vlh~~~~  250 (332)
T 3i53_A          171 GHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDD  250 (332)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCSEEEEESCGGGSCH
T ss_pred             CEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCcEEEEehhhccCCH
Confidence            99999999995               67899999888764       3799999999997788 4799999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      +++.++|++++++|+|||+|+|.|.+.++. .  +    ...+|+.|+.  ..+|+.||.+||.++|+++||+.+++.++
T Consensus       251 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~-~--~----~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~  321 (332)
T 3i53_A          251 LSAVAILRRCAEAAGSGGVVLVIEAVAGDE-H--A----GTGMDLRMLT--YFGGKERSLAELGELAAQAGLAVRAAHPI  321 (332)
T ss_dssp             HHHHHHHHHHHHHHTTTCEEEEEECCCC------C----CHHHHHHHHH--HHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEEeecCCCC-C--c----cHHHHHHHHh--hCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence            999999999999999999999999988754 2  1    2367888876  67899999999999999999999999986


Q ss_pred             c
Q 043063          299 L  299 (301)
Q Consensus       299 ~  299 (301)
                      .
T Consensus       322 ~  322 (332)
T 3i53_A          322 S  322 (332)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=100.00  E-value=2.2e-44  Score=327.41  Aligned_cols=290  Identities=29%  Similarity=0.473  Sum_probs=246.3

Q ss_pred             CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccc-----ccC-CCeEecChhchhh
Q 043063            3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHRE-----FGG-ERKYSLTEIGKSL   74 (301)
Q Consensus         3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~-----~~~-~~~y~~t~~s~~l   74 (301)
                      +++|+++|||+.|..  +|+|++|||+++|+ +|.+++.++||||+|++.|+|++..+     ++. +++|++|+.++.|
T Consensus        27 l~~a~~lgif~~L~~~~~~~t~~eLA~~~g~-~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~g~~~~~y~~t~~s~~l  105 (358)
T 1zg3_A           27 LKSAMELGIADAIHNHGKPMTLSELASSLKL-HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGDEEEEIAYSLTPPSKLL  105 (358)
T ss_dssp             HHHHHHHTHHHHHHHHTSCEEHHHHHHHTTC-CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSSCCCEEEEEECHHHHTT
T ss_pred             HHHHHHCChHhHHhhcCCCcCHHHHHHhcCC-CCcchHHHHHHHHHHhhCCcEEEecccccccCCCCCCEEeCCHHHHHH
Confidence            578999999999985  49999999999999 33357899999999999999998610     000 3689999999988


Q ss_pred             hcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCC--CCChhhhccCCCchhccccCchHHH--HHHHHHhcCCccchHH
Q 043063           75 VTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDP--TIEPFVKVHGEPTYSYYGKMPEMNG--LMRKAMSGVSVPFMTS  150 (301)
Q Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g--~~~~~~~~~g~~~~~~~~~~~~~~~--~~~~~m~~~~~~~~~~  150 (301)
                      +.+.+ .++++++.+..++.+++.|.+|++++++|  . ++|+..+|.++|+|+.++|+..+  .|+++|...+.... .
T Consensus       106 ~~~~~-~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~-~~~~~~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~-~  182 (358)
T 1zg3_A          106 ISGKP-TCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQ-TLFECATGESFWDFLNKDSESSTLSMFQDAMASDSRMFK-L  182 (358)
T ss_dssp             CTTST-TCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCC-CHHHHHHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHH-H
T ss_pred             hCCCC-ccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCC-ChHHHHhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHH-H
Confidence            87654 57899998876667789999999999998  5 78988889999999999999999  99999987766555 6


Q ss_pred             hhhcCC-CCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhc
Q 043063          151 ILDGYD-GFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLT  214 (301)
Q Consensus       151 ~~~~~~-~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh  214 (301)
                      +++.++ .+++..+|||||||+|               +++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++||
T Consensus       183 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~vlh  262 (358)
T 1zg3_A          183 VLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLH  262 (358)
T ss_dssp             HHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTTCCCCCSEEEEESCGG
T ss_pred             HHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCCCCCCceEEEEccccc
Confidence            777772 2777889999999995               678999999999887789999999998888889999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCC---CCEEEEeccccCCCCCChH-HhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          215 TWTDDECKLIMENCYKAIPA---GGKLIACEPVLPDDSNESQ-RTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~p---gg~lli~e~~~~~~~~~~~-~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      +|+|+++.++|++++++|+|   ||+|+|.|.+.++... .| .......+|+.|+.  ..+|+.||.++|.++|+++||
T Consensus       263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~-~~~~~~~~~~~d~~~~~--~~~g~~~t~~e~~~ll~~aGf  339 (358)
T 1zg3_A          263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSD-DRGLTELQLDYDLVMLT--MFLGKERTKQEWEKLIYDAGF  339 (358)
T ss_dssp             GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCS-CHHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCc-cchhhhHHHhhCHHHhc--cCCCCCCCHHHHHHHHHHcCC
Confidence            99999999999999999999   9999999999876532 21 12245567888875  668999999999999999999


Q ss_pred             CceEEEEcc
Q 043063          291 PHLRLYRVL  299 (301)
Q Consensus       291 ~~~~~~~~~  299 (301)
                      +.+++.++.
T Consensus       340 ~~~~~~~~~  348 (358)
T 1zg3_A          340 SSYKITPIS  348 (358)
T ss_dssp             CEEEEEEET
T ss_pred             CeeEEEecC
Confidence            999998864

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=100.00  E-value=9.3e-44  Score=324.89  Aligned_cols=294  Identities=34%  Similarity=0.610  Sum_probs=235.6

Q ss_pred             CccccccccccccCC-C-C---CCHHHHHHHhCC--CCCCCcccHHHHHHHHhcCcceecccccc-C---CCeEecChhc
Q 043063            3 DNECRDGGKKGRLAN-T-P---LSASQILTRILP--SGGGDAENLQRILRLLTNYGVFSEHREFG-G---ERKYSLTEIG   71 (301)
Q Consensus         3 ~~~a~~lglf~~L~~-g-~---~t~~ela~~~~~--~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~---~~~y~~t~~s   71 (301)
                      +++|+++|||+.|.. | |   +|++|||+++|+  ++|.+++.++||||+|++.|+|++....+ .   +++|++|+.+
T Consensus        41 l~~a~~lgif~~L~~~g~pg~~~t~~eLA~~~~~~~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~~g~~~~~y~~t~~s  120 (372)
T 1fp1_D           41 LNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSMVG  120 (372)
T ss_dssp             HHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECTTG
T ss_pred             HHHHHHCChHHHHHhcCCCCCCcCHHHHHHhcCCCCCCCcChHHHHHHHHHHhhCCceEecccccCCCCcCCeEecCHHH
Confidence            578999999999986 5 7   999999999998  13436789999999999999999861000 1   3589999999


Q ss_pred             hhhhcCCCCCChhHHHHhhcchhHHhhhhhHHHhhcCC-CCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHH
Q 043063           72 KSLVTDAEGQSYAPYVLQHHQDALMSAWPLVHEAILDP-TIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTS  150 (301)
Q Consensus        72 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~  150 (301)
                      +.|+.+.+..++++++.+..++.+++.|.+|++++++| . ++|+..+|.++|+|+.++|+..+.|+++|...+....+.
T Consensus       121 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~  199 (372)
T 1fp1_D          121 KYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDI-DLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKR  199 (372)
T ss_dssp             GGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC---------------CCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCC-ChhHHHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHH
Confidence            98876643247889988776666788999999999998 6 789888899999999999999999999998877766778


Q ss_pred             hhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhcc
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTT  215 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~  215 (301)
                      +++.++.+++..+|||||||+|               +++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++||+
T Consensus       200 l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~~~D~v~~~~~lh~  279 (372)
T 1fp1_D          200 MLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHN  279 (372)
T ss_dssp             HHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGG
T ss_pred             HHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCCCCCEEEEeccccc
Confidence            8888854788899999999995               6779999999998888999999999988887999999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      |+|+++.++|++++++|+|||+|+|.|.+.++.............+|+.|+.  ..+|+.||.++|.++|+++||+++++
T Consensus       280 ~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~  357 (372)
T 1fp1_D          280 WSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQV  357 (372)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCccchHHHHHHHhhHHHHh--ccCCccCCHHHHHHHHHHCCCceEEE
Confidence            9999999999999999999999999999887653211111134567887775  55789999999999999999999999


Q ss_pred             EEcc
Q 043063          296 YRVL  299 (301)
Q Consensus       296 ~~~~  299 (301)
                      .++.
T Consensus       358 ~~~~  361 (372)
T 1fp1_D          358 ACRA  361 (372)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            8854

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=100.00  E-value=8.7e-44  Score=320.44  Aligned_cols=276  Identities=24%  Similarity=0.373  Sum_probs=240.9

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS   82 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~   82 (301)
                      +++|+++|||+.|.++|.|++|||+++|+    +++.++|+|++|++.|+|++.    +++.|++|+.++.|. +.+ .+
T Consensus        25 l~~~~~lgi~~~l~~~~~t~~ela~~~~~----~~~~l~r~Lr~L~~~g~l~~~----~~~~y~~t~~s~~l~-~~~-~~   94 (334)
T 2ip2_A           25 VYVATRLGLADLIESGIDSDETLAAAVGS----DAERIHRLMRLLVAFEIFQGD----TRDGYANTPTSHLLR-DVE-GS   94 (334)
T ss_dssp             HHHHHHTTHHHHHHTTCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----TTTEEEECHHHHTTS-SST-TC
T ss_pred             HHHHHHcCcHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHhCCceEec----CCCeEecCHHHHHHh-CCC-cc
Confidence            46899999999998899999999999999    899999999999999999998    368999999998887 432 57


Q ss_pred             hhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcc
Q 043063           83 YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVK  162 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~  162 (301)
                      +.+++.+..++.. +.|.+|++++++|. ++|+..+|.++|+|+.++++..+.|+++| ..+....+.+++.++ +++ .
T Consensus        95 ~~~~~~~~~~~~~-~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~-~~~-~  169 (334)
T 2ip2_A           95 FRDMVLFYGEEFH-AAWTPACEALLSGT-PGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLD-FRG-R  169 (334)
T ss_dssp             SHHHHHHHTTHHH-HHTTTHHHHHHHCC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSC-CTT-C
T ss_pred             HHHHHHHhcCchh-hHHHHHHHHHhcCC-ChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCC-CCC-C
Confidence            8899887765444 89999999999998 89988889999999999999999999999 777777788888886 888 9


Q ss_pred             eEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCChH
Q 043063          163 RLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDD  219 (301)
Q Consensus       163 ~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d~  219 (301)
                      +|||||||+|               +++|+|.+++.+++       .+||+++.+|+++++|. +|+|++++++|+|+++
T Consensus       170 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~~  249 (334)
T 2ip2_A          170 SFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEA  249 (334)
T ss_dssp             EEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEEEEESCGGGCCHH
T ss_pred             EEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEEEEchhccCCCHH
Confidence            9999999995               67899888877764       36899999999988776 5999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      ++.++|++++++|+|||+|+|.|.+.++...  +  .....+|+.|+.  ..+|+.||.++|.++++++||+.+++.++.
T Consensus       250 ~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~--~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~~~  323 (334)
T 2ip2_A          250 ASLRLLGNCREAMAGDGRVVVIERTISASEP--S--PMSVLWDVHLFM--ACAGRHRTTEEVVDLLGRGGFAVERIVDLP  323 (334)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--C--HHHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEET
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--c--chhHHhhhHhHh--hCCCcCCCHHHHHHHHHHCCCceeEEEECC
Confidence            9999999999999999999999998876532  1  234567887875  567999999999999999999999998864

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=100.00  E-value=3.4e-43  Score=318.90  Aligned_cols=287  Identities=29%  Similarity=0.469  Sum_probs=243.7

Q ss_pred             CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCC
Q 043063            3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEG   80 (301)
Q Consensus         3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~   80 (301)
                      +++|+++|||+.|..  +|.|++|||+++|+ +|.+++.++||||+|++.|+|++.++  +++.|++|+.++.|+.+.+ 
T Consensus        33 l~~a~~lgif~~L~~~~~~~t~~ela~~~~~-~~~~~~~l~rlLr~L~~~gll~~~~~--~~~~y~~t~~s~~L~~~~~-  108 (352)
T 1fp2_A           33 LKWAVEMNIPNIIQNHGKPISLSNLVSILQV-PSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLVRGSD-  108 (352)
T ss_dssp             HHHHHHTTHHHHHHHHTSCEEHHHHHHHHTC-CGGGHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHTTSTTSS-
T ss_pred             HHHHHHCChhhhhhhcCCCccHHHHHHHhCc-CCCChHHHHHHHHHHHhCCeEEEecC--CCCeEeCCHHHHHHhCCCC-
Confidence            478999999999985  59999999999999 23247799999999999999998710  1579999999998886654 


Q ss_pred             CChhHHHHhhcchhHHhhhhhHHHhhc-CCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcC--CC
Q 043063           81 QSYAPYVLQHHQDALMSAWPLVHEAIL-DPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGY--DG  157 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~-~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~--~~  157 (301)
                      .++++++.+..++.+++.|.+|+++++ +|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+. ++.+  + 
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~-~~~~~~~-  185 (352)
T 1fp2_A          109 LCLAPMVECVLDPTLSGSYHELKKWIYEEDL-TLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLA-LRDCDFV-  185 (352)
T ss_dssp             SCCHHHHHHHTCHHHHHGGGGHHHHHTCSSC-CHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHH-HHTCHHH-
T ss_pred             ccHHHHHHHhcCchHHHHHHHHHHHHHhcCC-ChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhH-HHhcccc-
Confidence            578999887766667889999999999 787 899988899999999999999999999999887766566 6777  4 


Q ss_pred             CCCcceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCChHHHH
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~  222 (301)
                      +++..+|||||||+|               +++|+|.+++.+++.++|+++.+|+++++|.+|+|+++++||+|+|+++.
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~~lh~~~d~~~~  265 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCL  265 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHH
T ss_pred             cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeehhhccCCHHHHH
Confidence            778899999999995               68899999999988778999999999888888999999999999999999


Q ss_pred             HHHHHHHHhCCC---CCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          223 LIMENCYKAIPA---GGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       223 ~iL~~~~~aL~p---gg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      ++|++++++|+|   ||+|+|.|.+.++.............+|+.|+.   .+|+.||.++|.++|+++||+.+++.++.
T Consensus       266 ~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~~~~~~~~~~d~~~~~---~~g~~~t~~e~~~ll~~aGf~~~~~~~~~  342 (352)
T 1fp2_A          266 RILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMAC---LNGKERNEEEWKKLFIEAGFQHYKISPLT  342 (352)
T ss_dssp             HHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGGG---GTCCCEEHHHHHHHHHHTTCCEEEEEEEE
T ss_pred             HHHHHHHHhCCCCCCCcEEEEEEeecCCCCCccchhhhHhhccHHHHh---ccCCCCCHHHHHHHHHHCCCCeeEEEecC
Confidence            999999999999   999999999887653211011234567777764   34889999999999999999999998854

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=100.00  E-value=8.1e-42  Score=311.02  Aligned_cols=276  Identities=18%  Similarity=0.192  Sum_probs=221.5

Q ss_pred             CccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCC
Q 043063            3 DNECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEG   80 (301)
Q Consensus         3 ~~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~   80 (301)
                      +++|+++|||+.|.+  ||+|++|||+++|+    +++.++|||++|+++|+|++.     +++|++|+.+++|+.++. 
T Consensus        32 l~~a~~lgifd~L~~~~~~~t~~eLA~~~g~----~~~~l~rlLr~l~~~g~l~~~-----~~~y~~t~~s~~L~~~~~-  101 (363)
T 3dp7_A           32 SRLMLKFGIFQLLSGKREGYTLQEISGRTGL----TRYAAQVLLEASLTIGTILLE-----EDRYVLAKAGWFLLNDKM-  101 (363)
T ss_dssp             HHHHHHTTHHHHHHTCTTCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEE-----TTEEEECHHHHHHHHCHH-
T ss_pred             HHHHHHhCHHHHHHhcCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCeEec-----CCEEecccchHHhhCCCc-
Confidence            478999999999986  89999999999999    899999999999999999887     789999999998887642 


Q ss_pred             CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccC--CCchhccccCchHHH----HHHHHHhcCCccchHHhhhc
Q 043063           81 QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHG--EPTYSYYGKMPEMNG----LMRKAMSGVSVPFMTSILDG  154 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g--~~~~~~~~~~~~~~~----~~~~~m~~~~~~~~~~~~~~  154 (301)
                        ...++.+. .+..+++|.+|++++++|. +++...+|  .++|+++.++|+..+    .|+.+|.....   ..++..
T Consensus       102 --~~~~~~~~-~~~~~~~~~~L~~~lr~g~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~---~~~l~~  174 (363)
T 3dp7_A          102 --ARVNMEFN-HDVNYQGLFHLEEALLNGR-PEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQSF---GKALEI  174 (363)
T ss_dssp             --HHHHHHHH-HHTTHHHHTTHHHHHHHSS-CGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCCCC---HHHHHH
T ss_pred             --ccchheee-cHHhhhhHHHHHHHHhcCC-CccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhhhH---HHHHHH
Confidence              22333333 3457899999999999998 67777787  689999998988765    36666665432   234444


Q ss_pred             CCCCCCcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEee
Q 043063          155 YDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIF  208 (301)
Q Consensus       155 ~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~  208 (301)
                      +. ..+..+|||||||+|               +++|+|.+++.+++       .+||+|+.+|++++   +|. +|+|+
T Consensus       175 ~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~  253 (363)
T 3dp7_A          175 VF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVW  253 (363)
T ss_dssp             HG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEE
T ss_pred             hc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEE
Confidence            42 356789999999995               68899999888764       26899999999985   664 69999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh--hhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT--RALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~--~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      ++++||+|+|+++.++|++++++|+|||+|+|.|.+.++... .+..  ......++.|+.  ..+++.||.+||.++|+
T Consensus       254 ~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~  330 (363)
T 3dp7_A          254 MSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRY-ETASYCLTQISLYFTAMA--NGNSKMFHSDDLIRCIE  330 (363)
T ss_dssp             EESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSS-HHHHHHHHHHHHHHHHSS--CSSCCSCCHHHHHHHHH
T ss_pred             EechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccc-cchhhHHHHhhhhHHhhh--CCCCcccCHHHHHHHHH
Confidence            999999999999999999999999999999999998876532 1110  111233444443  55688999999999999


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      ++||+++++.+..
T Consensus       331 ~AGf~~v~~~~~~  343 (363)
T 3dp7_A          331 NAGLEVEEIQDNI  343 (363)
T ss_dssp             TTTEEESCCCCCB
T ss_pred             HcCCeEEEEEeCC
Confidence            9999999988654

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=100.00  E-value=5.2e-41  Score=306.77  Aligned_cols=280  Identities=21%  Similarity=0.270  Sum_probs=237.6

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC--eEecChhchhhhcCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER--KYSLTEIGKSLVTDAEG   80 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~--~y~~t~~s~~l~~~~~~   80 (301)
                      +++|+++|||+.|.+||+|++|||+++|+    +++.++|+||+|++.|+|++.    .++  .|++|+.++.|..+.+ 
T Consensus        33 l~~~~~l~i~~~l~~~~~t~~eLA~~~g~----~~~~l~r~Lr~L~~~Gll~~~----~~~~~~y~~t~~s~~l~~~~~-  103 (374)
T 1qzz_A           33 LRVAATLRLVDHLLAGADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGG----EKQGRPLRPTRLGMLLADGHP-  103 (374)
T ss_dssp             HHHHHHTTHHHHHHTTCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECC----CC-CCCCEECTTGGGGSTTCT-
T ss_pred             HHHHHHcChHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHhhCCCEEEe----CCCCeEEEEChHHHhhcCCCc-
Confidence            46899999999998899999999999999    899999999999999999986    366  8999999988876653 


Q ss_pred             CChhHHHHhhcchhHH-hhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063           81 QSYAPYVLQHHQDALM-SAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~-~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~  159 (301)
                      .++.+++.+..++..+ ..|.+|.+++++|. ++|+..+|.++|+++.++++..+.|+++|........+.+++.++ ++
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~  181 (374)
T 1qzz_A          104 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS  181 (374)
T ss_dssp             TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred             ccHHHHHHHcCChhhHHHHHHHHHHHHhcCC-ChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhHHHHHHHhCC-CC
Confidence            5788888777544456 89999999999998 788888899999998889999999999999887777788888886 88


Q ss_pred             CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~  216 (301)
                      +..+|||||||+|               +++|+|.+++.+++       .+||+++.+|+++++|. .|+|++++++|+|
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~  261 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW  261 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCCCEEEEeccccCC
Confidence            8899999999995               57899888887764       25899999999987776 6999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEecc--ccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEP--VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~--~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~  294 (301)
                      +++++.++|++++++|+|||+++|.|.  +.++...    ......+++.|+.  ..+|+.++.++|.++|+++||++++
T Consensus       262 ~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~~~~~~~~~~--~~~~~~~~~~~~~~ll~~aGf~~~~  335 (374)
T 1qzz_A          262 SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD----RFFSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALAS  335 (374)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEECCH-----------HHHHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC----cchhhhcchHHHH--hCCCcCCCHHHHHHHHHHCCCceEE
Confidence            999999999999999999999999999  7765421    1234467777775  5678999999999999999999999


Q ss_pred             EEEcc
Q 043063          295 LYRVL  299 (301)
Q Consensus       295 ~~~~~  299 (301)
                      +.++.
T Consensus       336 ~~~~~  340 (374)
T 1qzz_A          336 ERTSG  340 (374)
T ss_dssp             EEEEC
T ss_pred             EEECC
Confidence            98764

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=100.00  E-value=1.7e-40  Score=301.99  Aligned_cols=280  Identities=21%  Similarity=0.348  Sum_probs=240.1

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS   82 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~   82 (301)
                      +++++++|||+.|.++|.|++|||+++|+    +++.++++|++|++.|+|.+.    .+++|++|+.++.|..+.+ .+
T Consensus        36 l~~~~~l~i~~~l~~~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~~~~~----~~g~y~~t~~s~~l~~~~~-~~  106 (360)
T 1tw3_A           36 VRTAATLRLVDHILAGARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED----APGEFVPTEVGELLADDHP-AA  106 (360)
T ss_dssp             HHHHHHTTHHHHHHTTCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEECTTGGGGSTTST-TC
T ss_pred             HHHHHHhCHHHHHhCCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEec----CCCeEEeCHHHHHHhcCCc-hh
Confidence            46789999999998899999999999999    899999999999999999996    3789999999988887653 57


Q ss_pred             hhHHHHhhcchh-HHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063           83 YAPYVLQHHQDA-LMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV  161 (301)
Q Consensus        83 ~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~  161 (301)
                      +.+++.+...+. .+..|.+|.+.+++|. ++++..+|.++|+++.++++....|..+|........+.+++.++ +++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~-~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~~l~~~~~-~~~~  184 (360)
T 1tw3_A          107 QRAWHDLTQAVARADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNV  184 (360)
T ss_dssp             HHHHTCTTSHHHHHGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTC
T ss_pred             HHHHHHHhcCchhHHHHHHHHHHHHHcCC-CHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHHHHHHhCC-CccC
Confidence            888877665433 5689999999999998 788888899999998888999999999999887777788888886 8888


Q ss_pred             ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCCh
Q 043063          162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTD  218 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d  218 (301)
                      .+|||||||+|               +++|+|.+++.+++       .+||+++.+|+++++|. +|+|++++++|+|++
T Consensus       185 ~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~vl~~~~~  264 (360)
T 1tw3_A          185 RHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPD  264 (360)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCH
T ss_pred             cEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccEEEEcccccCCCH
Confidence            99999999995               56788888877653       24899999999987776 699999999999999


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccc-cCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPV-LPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~-~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                      +++.++|++++++|+|||+++|.|.. .++... .   .....+|+.|+.  ..+++.+|.++|.++|+++||+++++.+
T Consensus       265 ~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~-~---~~~~~~~~~~~~--~~~~~~~t~~e~~~ll~~aGf~~~~~~~  338 (360)
T 1tw3_A          265 HDAVRILTRCAEALEPGGRILIHERDDLHENSF-N---EQFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVRQ  338 (360)
T ss_dssp             HHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCC-S---HHHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCC-c---chhhhccHHHhh--hcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence            99999999999999999999999998 654422 1   123456777775  5678999999999999999999999887


Q ss_pred             cc
Q 043063          298 VL  299 (301)
Q Consensus       298 ~~  299 (301)
                      +.
T Consensus       339 ~~  340 (360)
T 1tw3_A          339 LP  340 (360)
T ss_dssp             EE
T ss_pred             CC
Confidence            64

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=100.00  E-value=1.3e-39  Score=293.13  Aligned_cols=276  Identities=14%  Similarity=0.145  Sum_probs=233.1

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc-hhhhcCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG-KSLVTDAEGQ   81 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s-~~l~~~~~~~   81 (301)
                      +++|+++|||+.|.+||.|++|||+++|+    +++.++|||++|++.|+|++.     +++|++|+.+ +.|..+.. .
T Consensus        23 l~~~~~l~i~~~l~~~~~t~~ela~~~~~----~~~~l~r~L~~L~~~g~l~~~-----~~~y~~t~~~~~~l~~~~~-~   92 (335)
T 2r3s_A           23 IKAAVELNVFTAISQGIESSQSLAQKCQT----SERGMRMLCDYLVIIGFMTKQ-----AEGYRLTSDSAMFLDRQSK-F   92 (335)
T ss_dssp             HHHHHHTTHHHHHTTSEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHTCTTST-T
T ss_pred             HHHHHHcChHHHHhcCCCCHHHHHHHhCC----CchHHHHHHHHHHhcCCeEec-----CCEEecCHHHHHHhccCCc-H
Confidence            46899999999999899999999999999    899999999999999999986     7899999999 56765543 5


Q ss_pred             ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCC--C
Q 043063           82 SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGF--K  159 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~--~  159 (301)
                      ++++++.+..++..++.|.+|.+++++|. ++|+     + |+++.++++..+.|.+.|..........+++.++ +  .
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  164 (335)
T 2r3s_A           93 YVGDAIEFLLSPMITNGFNDLTAAVLKGG-TAIS-----S-EGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVN-ENKI  164 (335)
T ss_dssp             CCGGGHHHHTCHHHHGGGTTHHHHHHHTS-CCST-----T-TGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHHT-C--C
T ss_pred             HHHHHHHHhcchhhHHHHHhHHHHHhcCC-CCCC-----C-cccccCCHHHHHHHHHHHHHHHhhhHHHHHHhcc-cccC
Confidence            78888888765567889999999999987 5554     3 7877788899999999998877766778888886 7  7


Q ss_pred             CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|               +++|++.+++.+++       .+||+++.+|+++. +|. .|+|++++++|+
T Consensus       165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l~~  244 (335)
T 2r3s_A          165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHH  244 (335)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchhcc
Confidence            8899999999995               57898888877764       25899999999975 666 699999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      |+++++.++|++++++|+|||+++|.|...++... .+  .....+++.|+. ...+++.+|.++|.++++++||+.+++
T Consensus       245 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~t~~~~~~ll~~aGf~~~~~  320 (335)
T 2r3s_A          245 FDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRI-TP--PDAAAFSLVMLA-TTPNGDAYTFAEYESMFSNAGFSHSQL  320 (335)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSS-CS--HHHHHHHHHHHH-HSSSCCCCCHHHHHHHHHHTTCSEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcC-Cc--hHHHHHHHHHHe-eCCCCCcCCHHHHHHHHHHCCCCeeeE
Confidence            99999999999999999999999999998876532 12  234456777775 233789999999999999999999999


Q ss_pred             EEccC
Q 043063          296 YRVLD  300 (301)
Q Consensus       296 ~~~~~  300 (301)
                      .++..
T Consensus       321 ~~~~~  325 (335)
T 2r3s_A          321 HSLPT  325 (335)
T ss_dssp             ECCTT
T ss_pred             EECCC
Confidence            88753

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=100.00  E-value=1.9e-39  Score=294.06  Aligned_cols=270  Identities=14%  Similarity=0.186  Sum_probs=220.7

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCC
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQS   82 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~   82 (301)
                      +++|+++|||+.|.+ |+|++|||+++|+    +++.++||||+|++.|+|++.     +++|++|+.++.++....+.+
T Consensus        41 l~~a~~lgif~~l~~-~~t~~elA~~~~~----~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~s~~~l~~~~~~~  110 (352)
T 3mcz_A           41 LHYAVADKLFDLTQT-GRTPAEVAASFGM----VEGKAAILLHALAALGLLTKE-----GDAFRNTALTERYLTTTSADY  110 (352)
T ss_dssp             HHHHHHTTHHHHTTS-CBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHSTTCTTC
T ss_pred             HHHHHHCChHHHhCC-CCCHHHHHHHhCc----ChHHHHHHHHHHHHCCCeEec-----CCeeecCHHHHhhccCCChhh
Confidence            578999999999986 9999999999999    899999999999999999998     579999999986544444467


Q ss_pred             hhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCC-c
Q 043063           83 YAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKG-V  161 (301)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~-~  161 (301)
                      ++.++.+.  ...++.|.+|++++++|.+..|+..      .++.++++..+.|.++|...... +..+++.++ +++ .
T Consensus       111 ~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~------~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~~~-~~~~~  180 (352)
T 3mcz_A          111 IGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQE------SRFAHDTRARDAFNDAMVRLSQP-MVDVVSELG-VFARA  180 (352)
T ss_dssp             CHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHH------HHTTTCHHHHHHHHHHHHHHHHH-HHHHHHTCG-GGTTC
T ss_pred             HHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccc------cccccCHHHHHHHHHHHHhhhhh-HHHHHHhCC-CcCCC
Confidence            87777654  2467899999999999874443321      12356888899999999873221 337888886 777 8


Q ss_pred             ceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEeeHhhhhcc
Q 043063          162 KRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIFMKWVLTT  215 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~~~~vlh~  215 (301)
                      .+|||||||+|               +++|+|.+++.+++       .+||+++.+|++++   .|. +|+|+++++||+
T Consensus       181 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vlh~  260 (352)
T 3mcz_A          181 RTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHY  260 (352)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCGGG
T ss_pred             CEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccccc
Confidence            99999999995               67899988877653       26899999999986   344 599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      |+|+++.++|++++++|+|||+|+|.|.+.++... .+.  ....+|+.|+. ...+|+.||.++|.++|+++||++++.
T Consensus       261 ~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~~~t~~e~~~ll~~aGf~~~~~  336 (352)
T 3mcz_A          261 FDAREAREVIGHAAGLVKPGGALLILTMTMNDDRV-TPA--LSADFSLHMMV-NTNHGELHPTPWIAGVVRDAGLAVGER  336 (352)
T ss_dssp             SCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSS-SSH--HHHHHHHHHHH-HSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred             CCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCC-CCc--hHHHhhHHHHh-hCCCCCcCCHHHHHHHHHHCCCceeee
Confidence            99999999999999999999999999999887632 222  34567888875 345789999999999999999999885


Q ss_pred             E
Q 043063          296 Y  296 (301)
Q Consensus       296 ~  296 (301)
                      .
T Consensus       337 ~  337 (352)
T 3mcz_A          337 S  337 (352)
T ss_dssp             E
T ss_pred             c
Confidence            3

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=100.00  E-value=5.3e-39  Score=292.04  Aligned_cols=267  Identities=16%  Similarity=0.237  Sum_probs=222.6

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch-hhhcCCCC-
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK-SLVTDAEG-   80 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~-~l~~~~~~-   80 (301)
                      +++|+++|||+.|.++|.|++|||+++|+    +++.++||||+|++.|+|++.     +++|++|+.+. ++..+. + 
T Consensus        48 l~~a~~lgif~~L~~~~~t~~eLA~~~g~----~~~~l~rlLr~L~~~gll~~~-----~~~y~~t~~~~~~l~~~~-~~  117 (359)
T 1x19_A           48 MKAAIELDLFSHMAEGPKDLATLAADTGS----VPPRLEMLLETLRQMRVINLE-----DGKWSLTEFADYMFSPTP-KE  117 (359)
T ss_dssp             HHHHHHHTHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHSSSSC-SB
T ss_pred             HHHHHHcCcHHHHcCCCCCHHHHHHHhCc----ChHHHHHHHHHHHhCCCeEee-----CCeEecCHHHHHHhcCCC-CC
Confidence            47899999999999899999999999999    899999999999999999998     56999999764 555443 3 


Q ss_pred             --CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCch---HHHHHHHHHhcCCc-cchHHhhhc
Q 043063           81 --QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPE---MNGLMRKAMSGVSV-PFMTSILDG  154 (301)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~m~~~~~-~~~~~~~~~  154 (301)
                        .++++++.+. .+..++.|.+|++++++|. +          |+++.++|+   ..+.|.++|..... ...+.+++.
T Consensus       118 ~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~g~-~----------~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~~  185 (359)
T 1x19_A          118 PNLHQTPVAKAM-AFLADDFYMGLSQAVRGQK-N----------FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEE  185 (359)
T ss_dssp             TTBCCHHHHHHH-HHHHHHTGGGHHHHHTTSC-C----------CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccHHHHHHHH-HHHHHHHHHHHHHHHhcCC-C----------CcccccCchhhHHHHHHHHHHHHhccchhHHHHHHh
Confidence              4688888765 3467889999999999876 2          566777888   89999999999888 777888888


Q ss_pred             CCCCCCcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhh
Q 043063          155 YDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKW  211 (301)
Q Consensus       155 ~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~  211 (301)
                      ++ +++..+|||||||+|               +++|+|.+++.+++       .+||+++.+|+++. +|.+|+|++++
T Consensus       186 ~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~~  264 (359)
T 1x19_A          186 AK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCR  264 (359)
T ss_dssp             CC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEES
T ss_pred             cC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEec
Confidence            86 888899999999995               67899888887763       35799999999975 66679999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccc----cCHHHHHHHHHh
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH----MTEQEFKQLGFS  287 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~----rt~~e~~~~l~~  287 (301)
                      +||+|+|+++.++|++++++|+|||+++|.|...++..  .+..  ...+  .|+. ...+|++    ++.++|.++|++
T Consensus       265 vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~--~~~~--~~~~--~~~~-~~~~g~~~~~~~t~~e~~~ll~~  337 (359)
T 1x19_A          265 ILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNF--DYLS--HYIL-GAGMPFSVLGFKEQARYKEILES  337 (359)
T ss_dssp             CGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCTT--SCCH--HHHH--HHGG-GGGSSCCCCCCCCGGGHHHHHHH
T ss_pred             hhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCCC--CchH--HHHH--HHHH-hcCCCCcccCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999887542  1111  1122  3332 1344777    999999999999


Q ss_pred             CCCCceEEEEcc
Q 043063          288 AGFPHLRLYRVL  299 (301)
Q Consensus       288 aGf~~~~~~~~~  299 (301)
                      +||+.+++.++.
T Consensus       338 aGf~~v~~~~~~  349 (359)
T 1x19_A          338 LGYKDVTMVRKY  349 (359)
T ss_dssp             HTCEEEEEEEET
T ss_pred             CCCceEEEEecC
Confidence            999999988753

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.67  E-value=1.3e-16  Score=138.12  Aligned_cols=136  Identities=22%  Similarity=0.317  Sum_probs=100.0

Q ss_pred             CCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~  211 (301)
                      .++..+|||||||+|                 +++|+ |.+++.|++       ..+|+++.+|+.+. ++.+|+|++..
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~  147 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNF  147 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEES
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeee
Confidence            456789999999996                 46798 888887754       36899999999764 55689999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh--ccHHHH-h-----h------hhccccccC
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE--GDIFVM-T-----I------YRAKGKHMT  277 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~--~d~~m~-~-----~------~~~~g~~rt  277 (301)
                      +||++++++...+|++++++|+|||++++.|....++..   .......  .++... +     +      ...--...|
T Consensus       148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~---~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s  224 (261)
T 4gek_A          148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK---VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDS  224 (261)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHH---HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBC
T ss_pred             eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHH---HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCC
Confidence            999999988889999999999999999999988775521   1110000  000000 0     0      000012458


Q ss_pred             HHHHHHHHHhCCCCceEEE
Q 043063          278 EQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       278 ~~e~~~~l~~aGf~~~~~~  296 (301)
                      .+++.++|+++||+.++++
T Consensus       225 ~~~~~~~L~~AGF~~ve~~  243 (261)
T 4gek_A          225 VETHKARLHKAGFEHSELW  243 (261)
T ss_dssp             HHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCeEEEE
Confidence            9999999999999998864

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.56  E-value=1.4e-14  Score=122.91  Aligned_cols=139  Identities=14%  Similarity=0.145  Sum_probs=98.8

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc-ccEeeHhhhhccC
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTW  216 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~  216 (301)
                      .+..+|||||||+|               +++|. |.+++.+++    ..+++++.+|+.+. .+. .|+|++..++|++
T Consensus        43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~  122 (234)
T 3dtn_A           43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDMVVSALSIHHL  122 (234)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEEEEEESCGGGS
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceEEEEeCccccC
Confidence            45689999999995               57788 777766543    34899999999875 443 5999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccH--------HHHh---hhhccccccCHHHHHHHH
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDI--------FVMT---IYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~--------~m~~---~~~~~g~~rt~~e~~~~l  285 (301)
                      ++.+...+|+++++.|+|||++++.+...+.... ........+...        ....   -.......+|.++|.++|
T Consensus       123 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  201 (234)
T 3dtn_A          123 EDEDKKELYKRSYSILKESGIFINADLVHGETAF-IENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWL  201 (234)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHH-HHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChh-hhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHH
Confidence            9988888999999999999999999988765421 000000000000        0000   001123446899999999


Q ss_pred             HhCCCCceEEEEc
Q 043063          286 FSAGFPHLRLYRV  298 (301)
Q Consensus       286 ~~aGf~~~~~~~~  298 (301)
                      +++||+.+++.-.
T Consensus       202 ~~aGF~~v~~~~~  214 (234)
T 3dtn_A          202 KEAGFRDVSCIYK  214 (234)
T ss_dssp             HHTTCEEEEEEEE
T ss_pred             HHcCCCceeeeee
Confidence            9999999988653

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.53  E-value=1.4e-14  Score=124.96  Aligned_cols=141  Identities=15%  Similarity=0.258  Sum_probs=101.9

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--c
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--A  204 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~  204 (301)
                      ...+++.++ .....+|||||||+|             +++|+ |.+++.+++      .++++++.+|+.+. ++.  .
T Consensus        26 ~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~f  104 (260)
T 1vl5_A           26 LAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERF  104 (260)
T ss_dssp             HHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCE
T ss_pred             HHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCE
Confidence            445555553 566789999999996             57787 778777654      26799999999764 554  4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHH-HhhhhccccccCHHHHHH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV-MTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m-~~~~~~~g~~rt~~e~~~  283 (301)
                      |+|++..++|+++|.  ..+|++++++|+|||++++.+...+..+   ....   .+.... +. .......++.++|.+
T Consensus       105 D~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~---~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~  175 (260)
T 1vl5_A          105 HIVTCRIAAHHFPNP--ASFVSEAYRVLKKGGQLLLVDNSAPEND---AFDV---FYNYVEKER-DYSHHRAWKKSDWLK  175 (260)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEBCSSH---HHHH---HHHHHHHHH-CTTCCCCCBHHHHHH
T ss_pred             EEEEEhhhhHhcCCH--HHHHHHHHHHcCCCCEEEEEEcCCCCCH---HHHH---HHHHHHHhc-CccccCCCCHHHHHH
Confidence            999999999999986  4999999999999999999988765431   1111   111111 11 011234578999999


Q ss_pred             HHHhCCCCceEEEEc
Q 043063          284 LGFSAGFPHLRLYRV  298 (301)
Q Consensus       284 ~l~~aGf~~~~~~~~  298 (301)
                      +|+++||+.+++...
T Consensus       176 ~l~~aGf~~~~~~~~  190 (260)
T 1vl5_A          176 MLEEAGFELEELHCF  190 (260)
T ss_dssp             HHHHHTCEEEEEEEE
T ss_pred             HHHHCCCeEEEEEEe
Confidence            999999998877654

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.53  E-value=2.7e-14  Score=123.10  Aligned_cols=141  Identities=17%  Similarity=0.307  Sum_probs=106.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCCC----CceeEEeCCCCcc-CCc--ccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA--ADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~----~ri~~~~gd~~~~-~p~--~D~  206 (301)
                      ..+++.++ ..+..+|||||||+|              +++|+ +.+++.+++.    ++++++.+|+.+. ++.  .|+
T Consensus        45 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  123 (266)
T 3ujc_A           45 KKILSDIE-LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNFDL  123 (266)
T ss_dssp             HHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCEEE
T ss_pred             HHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcEEE
Confidence            44555664 667789999999995              57787 7777766542    7999999999874 544  499


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |++..++|++++++...+|+++++.|+|||++++.+...+......+      .+.-...   ..+...++.++|.++++
T Consensus       124 v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------~~~~~~~---~~~~~~~~~~~~~~~l~  194 (266)
T 3ujc_A          124 IYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWDD------EFKEYVK---QRKYTLITVEEYADILT  194 (266)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCCH------HHHHHHH---HHTCCCCCHHHHHHHHH
T ss_pred             EeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccchH------HHHHHHh---cCCCCCCCHHHHHHHHH
Confidence            99999999998888889999999999999999999987664211000      1111111   12334579999999999


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      ++||+++++.++.
T Consensus       195 ~~Gf~~~~~~~~~  207 (266)
T 3ujc_A          195 ACNFKNVVSKDLS  207 (266)
T ss_dssp             HTTCEEEEEEECH
T ss_pred             HcCCeEEEEEeCC
Confidence            9999999988753

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.51  E-value=5.8e-14  Score=119.66  Aligned_cols=128  Identities=16%  Similarity=0.320  Sum_probs=96.4

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCc---cCCc--ccEeeHhhhhccCCh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFK---SIPA--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~---~~p~--~D~v~~~~vlh~~~d  218 (301)
                      +++..+|||||||+|             +++|+ +.+++.+++.  ++++.+|+.+   +++.  .|+|++..++|++++
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~--~~~~~~d~~~~~~~~~~~~fD~i~~~~~l~~~~~  116 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEGK--FNVVKSDAIEYLKSLPDKYLDGVMISHFVEHLDP  116 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHTT--SEEECSCHHHHHHTSCTTCBSEEEEESCGGGSCG
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHhh--cceeeccHHHHhhhcCCCCeeEEEECCchhhCCc
Confidence            456689999999996             57787 7777777654  9999999876   3453  499999999999998


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ++...+|+++++.|+|||++++.......     ...    ..+.. ..  .......+.++|.++++++||+++++...
T Consensus       117 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-----~~~----~~~~~-~~--~~~~~~~~~~~l~~~l~~aGf~~~~~~~~  184 (240)
T 3dli_A          117 ERLFELLSLCYSKMKYSSYIVIESPNPTS-----LYS----LINFY-ID--PTHKKPVHPETLKFILEYLGFRDVKIEFF  184 (240)
T ss_dssp             GGHHHHHHHHHHHBCTTCCEEEEEECTTS-----HHH----HHHHT-TS--TTCCSCCCHHHHHHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcEEEEEeCCcch-----hHH----HHHHh-cC--ccccccCCHHHHHHHHHHCCCeEEEEEEe
Confidence            88889999999999999999987664221     111    11111 10  12234568999999999999999888764


Q ss_pred             c
Q 043063          299 L  299 (301)
Q Consensus       299 ~  299 (301)
                      .
T Consensus       185 ~  185 (240)
T 3dli_A          185 E  185 (240)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.51  E-value=2.4e-14  Score=120.17  Aligned_cols=137  Identities=15%  Similarity=0.207  Sum_probs=96.8

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC--CceeEEeCCCCcc-CCc-ccEeeHhhhhccCChH
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI--PGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDD  219 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~--~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d~  219 (301)
                      ..+..+|||||||+|             +++|. +.+++.+++.  .+++++.+|+.+. .+. .|+|++..++|++++.
T Consensus        43 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~  122 (220)
T 3hnr_A           43 NKSFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVSTYAFHHLTDD  122 (220)
T ss_dssp             HTCCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEEESCGGGSCHH
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEECcchhcCChH
Confidence            345679999999996             57787 7777776542  4899999999875 443 5999999999999998


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhc---cHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEG---DIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~---d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      +...+|+++++.|+|||++++.+...+...   .........   ..............++.++|.++|+++||+++.+.
T Consensus       123 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~  199 (220)
T 3hnr_A          123 EKNVAIAKYSQLLNKGGKIVFADTIFADQD---AYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTR  199 (220)
T ss_dssp             HHHHHHHHHHHHSCTTCEEEEEEECBSSHH---HHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCEEEEEeccccChH---HHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEee
Confidence            877899999999999999999987654321   111100000   00000000111233489999999999999877765


Q ss_pred             E
Q 043063          297 R  297 (301)
Q Consensus       297 ~  297 (301)
                      .
T Consensus       200 ~  200 (220)
T 3hnr_A          200 L  200 (220)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.50  E-value=3.8e-14  Score=121.52  Aligned_cols=135  Identities=19%  Similarity=0.248  Sum_probs=102.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~  206 (301)
                      ..+++.++ ..+..+|||||||+|              +++|. +.+++.+++    ..+++++.+|+.+. ++.  .|+
T Consensus        83 ~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T 1xtp_A           83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCeEE
Confidence            34555554 556789999999995              46787 777776653    26899999998764 443  499


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |++.+++|++++++..++|+++++.|+|||++++.+........         ..+.      ......++.++|.++|+
T Consensus       162 v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~---------~~~~------~~~~~~~~~~~~~~~l~  226 (254)
T 1xtp_A          162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK------EDSSLTRSDIHYKRLFN  226 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET------TTTEEEBCHHHHHHHHH
T ss_pred             EEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccc---------eecc------cCCcccCCHHHHHHHHH
Confidence            99999999999888899999999999999999999975543210         1110      11234579999999999


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      ++||+++++....
T Consensus       227 ~aGf~~~~~~~~~  239 (254)
T 1xtp_A          227 ESGVRVVKEAFQE  239 (254)
T ss_dssp             HHTCCEEEEEECT
T ss_pred             HCCCEEEEeeecC
Confidence            9999999887643

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.49  E-value=2.4e-13  Score=123.56  Aligned_cols=201  Identities=14%  Similarity=0.089  Sum_probs=126.6

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCCCCCChhHHHHh
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDAEGQSYAPYVLQ   89 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~   89 (301)
                      ++|..| .+|.|+.|||+.+|+    +++.+++||+.|.+.|+++..     ++ |++|+.+..+.......+..+.+..
T Consensus        47 ~ll~~L-~~~~t~~eLa~~~g~----~~~~v~~~L~~l~~~gll~~~-----~~-~~lt~~~~~~l~~~~~~~~~~~~~~  115 (373)
T 2qm3_A           47 NVLSAV-LASDDIWRIVDLSEE----PLPLVVAILESLNELGYVTFE-----DG-VKLTEKGEELVAEYGIGKRYDFTCP  115 (373)
T ss_dssp             HHHHHH-HHCSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECS-----SS-SEECHHHHHHHHHHTCCCCCC----
T ss_pred             HHHHHh-cCCCCHHHHHHHhCC----ChHHHHHHHHHHhhCCcEEEC-----CC-EEECHHHHHHHHhcCccccccccch
Confidence            889999 689999999999999    899999999999999999886     45 9999987643322111111111100


Q ss_pred             h------cchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcce
Q 043063           90 H------HQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKR  163 (301)
Q Consensus        90 ~------~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~  163 (301)
                      .      ....+...|..+.+.++... .+. ..+...   |.  .++.  .....+.         +....  ..+..+
T Consensus       116 ~~~g~g~~~~~~~~~~~~l~~~~~~~~-~~~-~~~~~~---~~--~~~~--~~~~~l~---------~~~~~--~~~~~~  175 (373)
T 2qm3_A          116 HCQGKTVDLQAFADLLEQFREIVKDRP-EPL-HEFDQA---YV--TPET--TVARVIL---------MHTRG--DLENKD  175 (373)
T ss_dssp             --------CGGGHHHHHHHHHHHTTCC-CCC-GGGTCC---CB--CHHH--HHHHHHH---------HHHTT--CSTTCE
T ss_pred             hhcCCCcchhhhHHHHHHHHHHHhcCC-ccc-hhcCCe---ec--CHHH--HHHHHHH---------HhhcC--CCCCCE
Confidence            0      00111234556666666443 211 111110   10  1111  1111110         01111  223579


Q ss_pred             EEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-----cccEeeHhhhhccC
Q 043063          164 LVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-----AADAIFMKWVLTTW  216 (301)
Q Consensus       164 vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-----~~D~v~~~~vlh~~  216 (301)
                      ||||| |+|               +++|+ |.+++.+++      .++|+++.+|+.+.+|     ..|+|++...+|..
T Consensus       176 VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~  254 (373)
T 2qm3_A          176 IFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPPETLE  254 (373)
T ss_dssp             EEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHH
T ss_pred             EEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCCCchH
Confidence            99999 995               57798 888887764      2389999999987544     25999998766543


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      .   ...+|++++++|+|||++++.+...
T Consensus       255 ~---~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          255 A---IRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             H---HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             H---HHHHHHHHHHHcccCCeEEEEEEec
Confidence            2   4799999999999999776666543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.48  E-value=5.3e-14  Score=117.64  Aligned_cols=134  Identities=16%  Similarity=0.142  Sum_probs=94.5

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--CCceeEEeCCCCccCCc--ccEeeHhhhhccCChH
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDD  219 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~  219 (301)
                      .....+|||||||+|             +++|. +.+++.+++  ..+++++.+|+.+..+.  .|+|++..++|+++++
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~~~~~  123 (218)
T 3ou2_A           44 GNIRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFFAHWLAHVPDD  123 (218)
T ss_dssp             TTSCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEEESCGGGSCHH
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEEechhhcCCHH
Confidence            445679999999996             57897 778877765  36899999999876443  4999999999999998


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc-------ccccCHHHHHHHHHhCCCCc
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK-------GKHMTEQEFKQLGFSAGFPH  292 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~-------g~~rt~~e~~~~l~~aGf~~  292 (301)
                      +...+|+++++.|+|||++++.+...+...    ..............-....       ....+.++|.++|+++||++
T Consensus       124 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v  199 (218)
T 3ou2_A          124 RFEAFWESVRSAVAPGGVVEFVDVTDHERR----LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSC  199 (218)
T ss_dssp             HHHHHHHHHHHHEEEEEEEEEEEECCCC----------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHHHcCCCeEEEEEeCCCCccc----cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEE
Confidence            888999999999999999999998664321    0000000000000000001       12359999999999999995


Q ss_pred             eEE
Q 043063          293 LRL  295 (301)
Q Consensus       293 ~~~  295 (301)
                      ...
T Consensus       200 ~~~  202 (218)
T 3ou2_A          200 SVD  202 (218)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.48  E-value=1.5e-13  Score=120.13  Aligned_cols=147  Identities=12%  Similarity=0.088  Sum_probs=104.9

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D  205 (301)
                      ..+++.++ ..+..+|||||||+|              +++|+ +..++.+++       .++++++.+|+. ++|. .|
T Consensus        54 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~-~~~~~fD  131 (287)
T 1kpg_A           54 DLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWE-QFDEPVD  131 (287)
T ss_dssp             HHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGG-GCCCCCS
T ss_pred             HHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChh-hCCCCee
Confidence            34555554 667789999999995              56787 777766543       258999999985 4454 59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC----ChHH-hhhhhhccHHHHhhhhccccccCHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN----ESQR-TRALLEGDIFVMTIYRAKGKHMTEQE  280 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~----~~~~-~~~~~~~d~~m~~~~~~~g~~rt~~e  280 (301)
                      +|++..++|++++++...+|+++++.|+|||++++.+...+....    ..+. .......+..... ...++..++.++
T Consensus       132 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~  210 (287)
T 1kpg_A          132 RIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPSIPM  210 (287)
T ss_dssp             EEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCCHHH
T ss_pred             EEEEeCchhhcChHHHHHHHHHHHHhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe-eCCCCCCCCHHH
Confidence            999999999998767789999999999999999999987653210    0000 0000111111111 123566779999


Q ss_pred             HHHHHHhCCCCceEEEEc
Q 043063          281 FKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       281 ~~~~l~~aGf~~~~~~~~  298 (301)
                      |.++++++||+++++..+
T Consensus       211 ~~~~l~~aGf~~~~~~~~  228 (287)
T 1kpg_A          211 VQECASANGFTVTRVQSL  228 (287)
T ss_dssp             HHHHHHTTTCEEEEEEEC
T ss_pred             HHHHHHhCCcEEEEEEeC
Confidence            999999999999998875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.48  E-value=1.1e-13  Score=119.90  Aligned_cols=142  Identities=16%  Similarity=0.134  Sum_probs=104.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--  203 (301)
                      ..+++.++ ..+..+|||||||+|              +++|+ +.+++.+++       .++++++.+|+.+. ++.  
T Consensus        51 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  129 (273)
T 3bus_A           51 DEMIALLD-VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDAS  129 (273)
T ss_dssp             HHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTC
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCC
Confidence            44555664 667789999999995              56787 677666543       35899999999764 554  


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                      .|+|++..++|++++.  ..+|+++++.|+|||++++.+........ ...   ....+.....  ...+..++.++|.+
T Consensus       130 fD~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~---~~~~~~~~~~--~~~~~~~~~~~~~~  201 (273)
T 3bus_A          130 FDAVWALESLHHMPDR--GRALREMARVLRPGGTVAIADFVLLAPVE-GAK---KEAVDAFRAG--GGVLSLGGIDEYES  201 (273)
T ss_dssp             EEEEEEESCTTTSSCH--HHHHHHHHTTEEEEEEEEEEEEEESSCCC-HHH---HHHHHHHHHH--HTCCCCCCHHHHHH
T ss_pred             ccEEEEechhhhCCCH--HHHHHHHHHHcCCCeEEEEEEeeccCCCC-hhH---HHHHHHHHhh--cCccCCCCHHHHHH
Confidence            4999999999999886  59999999999999999999987654321 111   1111111111  22456789999999


Q ss_pred             HHHhCCCCceEEEEcc
Q 043063          284 LGFSAGFPHLRLYRVL  299 (301)
Q Consensus       284 ~l~~aGf~~~~~~~~~  299 (301)
                      +++++||+++++..+.
T Consensus       202 ~l~~aGf~~~~~~~~~  217 (273)
T 3bus_A          202 DVRQAELVVTSTVDIS  217 (273)
T ss_dssp             HHHHTTCEEEEEEECH
T ss_pred             HHHHcCCeEEEEEECc
Confidence            9999999999888764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.47  E-value=1.4e-14  Score=121.17  Aligned_cols=144  Identities=15%  Similarity=0.207  Sum_probs=98.2

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--  203 (301)
                      ..+++.++ .++. +|||||||+|              +++|. +.+++.+++       .++++++.+|+.+. ++.  
T Consensus        34 ~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~  111 (219)
T 3dlc_A           34 ENIINRFG-ITAG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNY  111 (219)
T ss_dssp             HHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTC
T ss_pred             HHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCccc
Confidence            34444443 4444 9999999996              56787 777776654       25899999999874 554  


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhh-hhhh-ccHHHHhhhhccccccCHHHH
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTR-ALLE-GDIFVMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~-~~~~-~d~~m~~~~~~~g~~rt~~e~  281 (301)
                      .|+|++..++|++++.  ..+|+++++.|+|||++++.+...+.... ..... .... ......  .......++.++|
T Consensus       112 ~D~v~~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  186 (219)
T 3dlc_A          112 ADLIVSRGSVFFWEDV--ATAFREIYRILKSGGKTYIGGGFGNKELR-DSISAEMIRKNPDWKEF--NRKNISQENVERF  186 (219)
T ss_dssp             EEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEECCSSHHHH-HHHHHHHHHHCTTHHHH--HHHHSSHHHHHHH
T ss_pred             ccEEEECchHhhccCH--HHHHHHHHHhCCCCCEEEEEeccCcHHHH-HHHHHHHHHhHHHHHhh--hhhccccCCHHHH
Confidence            4999999999999775  58999999999999999998765442100 00000 0000 000000  0112334588999


Q ss_pred             HHHHHhCCCCceEEEEcc
Q 043063          282 KQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       282 ~~~l~~aGf~~~~~~~~~  299 (301)
                      .++|+++||+.+++....
T Consensus       187 ~~~l~~aGf~~v~~~~~~  204 (219)
T 3dlc_A          187 QNVLDEIGISSYEIILGD  204 (219)
T ss_dssp             HHHHHHHTCSSEEEEEET
T ss_pred             HHHHHHcCCCeEEEEecC
Confidence            999999999999988654

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.46  E-value=9.9e-14  Score=118.21  Aligned_cols=140  Identities=15%  Similarity=0.238  Sum_probs=101.2

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccE
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADA  206 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~  206 (301)
                      .+++.++ .....+|||||||+|             +++|. +.+++.+++      .++++++.+|+.+. ++.  .|+
T Consensus        12 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~   90 (239)
T 1xxl_A           12 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDI   90 (239)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEE
T ss_pred             hHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEE
Confidence            3444553 677889999999996             56787 777776653      26899999998764 443  499


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |++..++|++++.  ..+|++++++|+|||++++.+...+...   ....+....  ..+. .......++.++|.++|+
T Consensus        91 v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~ll~  162 (239)
T 1xxl_A           91 ITCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VLDEFVNHL--NRLR-DPSHVRESSLSEWQAMFS  162 (239)
T ss_dssp             EEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HHHHHHHHH--HHHH-CTTCCCCCBHHHHHHHHH
T ss_pred             EEECCchhhccCH--HHHHHHHHHHcCCCcEEEEEEcCCCCCh---hHHHHHHHH--HHhc-cccccCCCCHHHHHHHHH
Confidence            9999999999875  5899999999999999999998766431   111111111  1110 011235579999999999


Q ss_pred             hCCCCceEEEEc
Q 043063          287 SAGFPHLRLYRV  298 (301)
Q Consensus       287 ~aGf~~~~~~~~  298 (301)
                      ++||+.+++...
T Consensus       163 ~aGf~~~~~~~~  174 (239)
T 1xxl_A          163 ANQLAYQDIQKW  174 (239)
T ss_dssp             HTTEEEEEEEEE
T ss_pred             HCCCcEEEEEee
Confidence            999998887654

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.46  E-value=1.2e-13  Score=122.41  Aligned_cols=141  Identities=9%  Similarity=0.049  Sum_probs=103.1

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-  203 (301)
                      ...+++.++.+.+..+|||||||+|              +++|+ +.+++.+++       .++++++.+|+.+. ++. 
T Consensus       105 ~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~  184 (312)
T 3vc1_A          105 AEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKG  184 (312)
T ss_dssp             HHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTT
T ss_pred             HHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCC
Confidence            3455565533567789999999995              56787 777776653       25899999999864 553 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                       .|+|++..++|+++   ...+|++++++|+|||++++.+..........  ......++-..      ....++.++|.
T Consensus       185 ~fD~V~~~~~l~~~~---~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~--~~~~~~~~~~~------~~~~~s~~~~~  253 (312)
T 3vc1_A          185 AVTASWNNESTMYVD---LHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP--SKWVSQINAHF------ECNIHSRREYL  253 (312)
T ss_dssp             CEEEEEEESCGGGSC---HHHHHHHHHHHEEEEEEEEEEEEEECTTTCSC--CHHHHHHHHHH------TCCCCBHHHHH
T ss_pred             CEeEEEECCchhhCC---HHHHHHHHHHHcCCCcEEEEEEccccccccch--hHHHHHHHhhh------cCCCCCHHHHH
Confidence             49999999999994   57999999999999999999998776532110  00111111111      12356899999


Q ss_pred             HHHHhCCCCceEEEEcc
Q 043063          283 QLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       283 ~~l~~aGf~~~~~~~~~  299 (301)
                      ++|+++||+++++..+.
T Consensus       254 ~~l~~aGf~~~~~~~~~  270 (312)
T 3vc1_A          254 RAMADNRLVPHTIVDLT  270 (312)
T ss_dssp             HHHHTTTEEEEEEEECH
T ss_pred             HHHHHCCCEEEEEEeCC
Confidence            99999999999988753

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.46  E-value=8e-14  Score=122.52  Aligned_cols=131  Identities=14%  Similarity=0.181  Sum_probs=98.7

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~v  212 (301)
                      +.+..+|||||||+|              +++|+ +.+++.+++       .++++++.+|+.+. ++.  .|+|++..+
T Consensus        80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  159 (297)
T 2o57_A           80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDA  159 (297)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecch
Confidence            566789999999995              56787 777766653       26899999999874 554  499999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH  292 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~  292 (301)
                      +|++++.  ..+|++++++|+|||++++.+...+.....   ......+..      .......+.++|.++++++||++
T Consensus       160 l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~l~~aGf~~  228 (297)
T 2o57_A          160 FLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDK---SSIQPILDR------IKLHDMGSLGLYRSLAKECGLVT  228 (297)
T ss_dssp             GGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCG---GGGHHHHHH------HTCSSCCCHHHHHHHHHHTTEEE
T ss_pred             hhhcCCH--HHHHHHHHHHcCCCeEEEEEEeccCCCCch---HHHHHHHHH------hcCCCCCCHHHHHHHHHHCCCeE
Confidence            9999984  699999999999999999999876644211   111111111      11123458999999999999999


Q ss_pred             eEEEEcc
Q 043063          293 LRLYRVL  299 (301)
Q Consensus       293 ~~~~~~~  299 (301)
                      +++.++.
T Consensus       229 ~~~~~~~  235 (297)
T 2o57_A          229 LRTFSRP  235 (297)
T ss_dssp             EEEEECH
T ss_pred             EEEEECc
Confidence            9988764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.45  E-value=4.6e-13  Score=118.06  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=106.4

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D  205 (301)
                      ..+++.++ ..+..+|||||||+|              +++|+ |.+++.+++       .++++++.+|+.+. +. .|
T Consensus        62 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~fD  139 (302)
T 3hem_A           62 KLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEPVD  139 (302)
T ss_dssp             HHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCCCS
T ss_pred             HHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCCcc
Confidence            34555664 677789999999995              57787 777777653       24899999998654 44 59


Q ss_pred             EeeHhhhhccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh--------hccHHHHhhhh
Q 043063          206 AIFMKWVLTTWTD-------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL--------EGDIFVMTIYR  270 (301)
Q Consensus       206 ~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~--------~~d~~m~~~~~  270 (301)
                      +|++..++|+++|       +....+|+++++.|+|||++++.+...+...   .......        ..+..... ..
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~  215 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKE---EAQELGLTSPMSLLRFIKFILTE-IF  215 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCCHH---HHHHHTCCCCHHHHHHHHHHHHH-TC
T ss_pred             EEEEcchHHhcCccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccCcc---chhhccccccccccchHHHHHHh-cC
Confidence            9999999999955       5667999999999999999999998776431   0110000        01211111 13


Q ss_pred             ccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          271 AKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       271 ~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      .++..++.+++.++++++||+++++..+.
T Consensus       216 p~~~~~s~~~~~~~l~~aGf~~~~~~~~~  244 (302)
T 3hem_A          216 PGGRLPRISQVDYYSSNAGWKVERYHRIG  244 (302)
T ss_dssp             TTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence            45678899999999999999999988754

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.45  E-value=1.7e-13  Score=117.55  Aligned_cols=137  Identities=15%  Similarity=0.083  Sum_probs=99.8

Q ss_pred             HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-cc
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-AD  205 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D  205 (301)
                      .+++.++ ..+..+|||||||+|              +++|. |.+++.+++       .++++++.+|+.+. .+. .|
T Consensus        27 ~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD  105 (256)
T 1nkv_A           27 TLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCD  105 (256)
T ss_dssp             HHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEE
T ss_pred             HHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCC
Confidence            3444453 667789999999995              56787 777776653       25899999999765 323 59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++..++|++++.  .++|++++++|+|||++++.+.........  ......+..       ......++.++|.++|
T Consensus       106 ~V~~~~~~~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~--~~~~~~~~~-------~~~~~~~~~~~~~~~l  174 (256)
T 1nkv_A          106 VAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPAT--EEIAQACGV-------SSTSDFLTLPGLVGAF  174 (256)
T ss_dssp             EEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSS--HHHHHTTTC-------SCGGGSCCHHHHHHHH
T ss_pred             EEEECCChHhcCCH--HHHHHHHHHHcCCCeEEEEecCcccCCCCh--HHHHHHHhc-------ccccccCCHHHHHHHH
Confidence            99999999999874  589999999999999999999876544221  110000110       1112456999999999


Q ss_pred             HhCCCCceEEEEc
Q 043063          286 FSAGFPHLRLYRV  298 (301)
Q Consensus       286 ~~aGf~~~~~~~~  298 (301)
                      +++||+.+++...
T Consensus       175 ~~aGf~~~~~~~~  187 (256)
T 1nkv_A          175 DDLGYDVVEMVLA  187 (256)
T ss_dssp             HTTTBCCCEEEEC
T ss_pred             HHCCCeeEEEEeC
Confidence            9999999887653

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=4.1e-13  Score=115.93  Aligned_cols=136  Identities=10%  Similarity=0.057  Sum_probs=99.4

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVL  213 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vl  213 (301)
                      +++.++ ..+..+|||||||+|             +++|+ |.+++.+++..+++|+.+|+.+. ++.  .|+|++.+++
T Consensus        26 l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  104 (261)
T 3ege_A           26 IINLLN-LPKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVISILAI  104 (261)
T ss_dssp             HHHHHC-CCTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEEEESCG
T ss_pred             HHHHhC-CCCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEEEcchH
Confidence            344443 556789999999996             57898 88899888777999999999764 553  4999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      |++++.  .++|+++++.|+ ||++++.+...+.... .+..   ..+.. +..  ......++.+++. +|+++||+.+
T Consensus       105 ~~~~~~--~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~-~~~~---~~~~~-~~~--~~~~~~~~~~~~~-~l~~aGF~~v  173 (261)
T 3ege_A          105 HHFSHL--EKSFQEMQRIIR-DGTIVLLTFDIRLAQR-IWLY---DYFPF-LWE--DALRFLPLDEQIN-LLQENTKRRV  173 (261)
T ss_dssp             GGCSSH--HHHHHHHHHHBC-SSCEEEEEECGGGCCC-CGGG---GTCHH-HHH--HHHTSCCHHHHHH-HHHHHHCSEE
T ss_pred             hhccCH--HHHHHHHHHHhC-CcEEEEEEcCCchhHH-HHHH---HHHHH-Hhh--hhhhhCCCHHHHH-HHHHcCCCce
Confidence            999775  599999999999 9999999875432211 1110   11111 111  1223445788899 9999999999


Q ss_pred             EEEEc
Q 043063          294 RLYRV  298 (301)
Q Consensus       294 ~~~~~  298 (301)
                      ++.++
T Consensus       174 ~~~~~  178 (261)
T 3ege_A          174 EAIPF  178 (261)
T ss_dssp             EEEEC
T ss_pred             eEEEe
Confidence            88775

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.44  E-value=5.7e-13  Score=118.29  Aligned_cols=147  Identities=16%  Similarity=0.180  Sum_probs=105.2

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D  205 (301)
                      ..+++.++ ..+..+|||||||+|              +++|+ +.+++.+++       .++++++.+|+.+ +|. .|
T Consensus        80 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~fD  157 (318)
T 2fk8_A           80 DLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPVD  157 (318)
T ss_dssp             HHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCCS
T ss_pred             HHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCCcC
Confidence            44556664 667789999999995              56787 777776653       2579999999854 454 59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCC---h-HHh-hhhhhccHHHHhhhhccccccCHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNE---S-QRT-RALLEGDIFVMTIYRAKGKHMTEQE  280 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~---~-~~~-~~~~~~d~~m~~~~~~~g~~rt~~e  280 (301)
                      +|++..++|++++++...+|+++++.|+|||++++.+...+.....   . +.. ......+..... ...++..++.++
T Consensus       158 ~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~  236 (318)
T 2fk8_A          158 RIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPSTEM  236 (318)
T ss_dssp             EEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCCHHH
T ss_pred             EEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHh-cCCCCcCCCHHH
Confidence            9999999999987778899999999999999999999876542100   0 000 000011111111 123567789999


Q ss_pred             HHHHHHhCCCCceEEEEc
Q 043063          281 FKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       281 ~~~~l~~aGf~~~~~~~~  298 (301)
                      |.++++++||+++++..+
T Consensus       237 ~~~~l~~aGf~~~~~~~~  254 (318)
T 2fk8_A          237 MVEHGEKAGFTVPEPLSL  254 (318)
T ss_dssp             HHHHHHHTTCBCCCCEEC
T ss_pred             HHHHHHhCCCEEEEEEec
Confidence            999999999999988765

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.43  E-value=3.5e-13  Score=117.40  Aligned_cols=125  Identities=18%  Similarity=0.229  Sum_probs=94.5

Q ss_pred             CcceEEeecCCc---e---------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc------------CC--
Q 043063          160 GVKRLVDVGGSA---G---------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS------------IP--  202 (301)
Q Consensus       160 ~~~~vlDvGgG~---g---------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~------------~p--  202 (301)
                      +..+|||||||+   |               +.+|+ |.+++.+++    .++++++.+|++++            ++  
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~  156 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS  156 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence            457999999999   6               46798 888887764    37899999999753            22  


Q ss_pred             cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          203 AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       203 ~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                      ..|+|++..+||++++++...+|++++++|+|||+|++.+...+. +  ...   ....+.....  ......||.+||.
T Consensus       157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~-~--~~~---~~~~~~~~~~--~~~~~~~s~~ei~  228 (274)
T 2qe6_A          157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG-L--PAQ---QKLARITREN--LGEGWARTPEEIE  228 (274)
T ss_dssp             SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS-C--HHH---HHHHHHHHHH--HSCCCCBCHHHHH
T ss_pred             CCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc-h--HHH---HHHHHHHHhc--CCCCccCCHHHHH
Confidence            359999999999999988889999999999999999999987642 1  111   1122222221  1235678999999


Q ss_pred             HHHHhCCCCceE
Q 043063          283 QLGFSAGFPHLR  294 (301)
Q Consensus       283 ~~l~~aGf~~~~  294 (301)
                      ++|  .||++++
T Consensus       229 ~~l--~G~~l~~  238 (274)
T 2qe6_A          229 RQF--GDFELVE  238 (274)
T ss_dssp             HTT--TTCEECT
T ss_pred             HHh--CCCeEcc
Confidence            999  5997665

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.43  E-value=2.4e-13  Score=115.37  Aligned_cols=119  Identities=17%  Similarity=0.235  Sum_probs=95.2

Q ss_pred             ceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhhccCCh
Q 043063          162 KRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       162 ~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d  218 (301)
                      .+|||||||+|             +++|. |.+++.+++       ..+++++.+|+.+..+.  .|+|++..++|++++
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~  147 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAIEP  147 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTSCG
T ss_pred             CCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcCCH
Confidence            59999999996             57787 777776653       25799999999876443  599999999999998


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ++...+|++++++|+|||++++.+........ ++                   ....+.++|.++|+++||+++++...
T Consensus       148 ~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~-------------------~~~~~~~~~~~~l~~~Gf~~~~~~~~  207 (235)
T 3lcc_A          148 EMRPAWAKSMYELLKPDGELITLMYPITDHVG-GP-------------------PYKVDVSTFEEVLVPIGFKAVSVEEN  207 (235)
T ss_dssp             GGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS-CS-------------------SCCCCHHHHHHHHGGGTEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHCCCCcEEEEEEecccccCC-CC-------------------CccCCHHHHHHHHHHcCCeEEEEEec
Confidence            88889999999999999999998875543211 11                   11248999999999999999998876


Q ss_pred             cC
Q 043063          299 LD  300 (301)
Q Consensus       299 ~~  300 (301)
                      +.
T Consensus       208 ~~  209 (235)
T 3lcc_A          208 PH  209 (235)
T ss_dssp             TT
T ss_pred             CC
Confidence            53

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.43  E-value=8.1e-14  Score=115.50  Aligned_cols=124  Identities=19%  Similarity=0.078  Sum_probs=97.3

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~  222 (301)
                      ..+|||||||+|             +++|. +.+++.+++ ..+++++.+|+.+. ++.  .|+|++..++|++++++..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~  121 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELP  121 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHH
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHH
Confidence            578999999996             57787 778877765 47899999999764 443  4999999999999977788


Q ss_pred             HHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          223 LIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       223 ~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      .+|+++++.|+|||++++.+...+...          .++-     .......++.++|.++|+++||+++++...+
T Consensus       122 ~~l~~~~~~L~pgG~l~i~~~~~~~~~----------~~~~-----~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~  183 (203)
T 3h2b_A          122 DALVALRMAVEDGGGLLMSFFSGPSLE----------PMYH-----PVATAYRWPLPELAQALETAGFQVTSSHWDP  183 (203)
T ss_dssp             HHHHHHHHTEEEEEEEEEEEECCSSCE----------EECC-----SSSCEEECCHHHHHHHHHHTTEEEEEEEECT
T ss_pred             HHHHHHHHHcCCCcEEEEEEccCCchh----------hhhc-----hhhhhccCCHHHHHHHHHHCCCcEEEEEecC
Confidence            999999999999999999886544310          0000     0112345699999999999999999987654

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.42  E-value=2.7e-13  Score=115.51  Aligned_cols=124  Identities=16%  Similarity=0.200  Sum_probs=97.1

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|              +++|. +.+++.+++      ..+++++.+|+.+. .+.  .|+|++..++|+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            4689999999995              56787 777776653      23689999998654 443  599999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      +++++...+|+++++.|+|||++++.+...+.. .         .++.      ......++.++|.++|+++||+++++
T Consensus       159 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~-~---------~~~~------~~~~~~~~~~~~~~~l~~aGf~~~~~  222 (241)
T 2ex4_A          159 LTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEG-V---------ILDD------VDSSVCRDLDVVRRIICSAGLSLLAE  222 (241)
T ss_dssp             SCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSS-E---------EEET------TTTEEEEBHHHHHHHHHHTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHHhcCCCeEEEEEEccCCCc-c---------eecc------cCCcccCCHHHHHHHHHHcCCeEEEe
Confidence            999888899999999999999999999876541 0         1110      11234469999999999999999998


Q ss_pred             EEcc
Q 043063          296 YRVL  299 (301)
Q Consensus       296 ~~~~  299 (301)
                      ....
T Consensus       223 ~~~~  226 (241)
T 2ex4_A          223 ERQE  226 (241)
T ss_dssp             EECC
T ss_pred             eecC
Confidence            7654

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.42  E-value=4.9e-13  Score=112.03  Aligned_cols=130  Identities=20%  Similarity=0.221  Sum_probs=99.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc-
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA-  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~-  203 (301)
                      ..+++.++ .....+|||||||+|                +++|. +.+++.+++      .+++++..+|+.+. ++. 
T Consensus        27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~  105 (219)
T 3dh0_A           27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN  105 (219)
T ss_dssp             HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred             HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence            34445553 667789999999995                46787 777776654      25899999999764 444 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                       .|+|++..++|++++.  ..+|+++++.|+|||++++.+........ .+                 .....++.++|.
T Consensus       106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~-----------------~~~~~~~~~~~~  165 (219)
T 3dh0_A          106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKPFAYLAIIDWKKEERDK-GP-----------------PPEEVYSEWEVG  165 (219)
T ss_dssp             CEEEEEEESCGGGCSSH--HHHHHHHHHHEEEEEEEEEEEECSSCCSS-SC-----------------CGGGSCCHHHHH
T ss_pred             CeeEEEeehhhhhcCCH--HHHHHHHHHHhCCCeEEEEEEeccccccc-CC-----------------chhcccCHHHHH
Confidence             4999999999999875  58999999999999999999876654321 10                 011234899999


Q ss_pred             HHHHhCCCCceEEEEcc
Q 043063          283 QLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       283 ~~l~~aGf~~~~~~~~~  299 (301)
                      ++++++||+++++..+.
T Consensus       166 ~~l~~~Gf~~~~~~~~~  182 (219)
T 3dh0_A          166 LILEDAGIRVGRVVEVG  182 (219)
T ss_dssp             HHHHHTTCEEEEEEEET
T ss_pred             HHHHHCCCEEEEEEeeC
Confidence            99999999999987754

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.42  E-value=5.3e-13  Score=113.48  Aligned_cols=130  Identities=17%  Similarity=0.143  Sum_probs=96.5

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCCh
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d  218 (301)
                      .+..+|||||||+|             +++|. |.+++.+++   ..+++++.+|+.+. ++.  .|+|++.+++|++++
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~  131 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEE  131 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSSC
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhccC
Confidence            35679999999996             57787 777777665   37899999999864 543  499999999999987


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      .  ..+|+++++.|+|||++++.+........   .........      ........+..+|.++++++||++++...+
T Consensus       132 ~--~~~l~~~~~~L~pgG~l~i~~~~~~~~~~---~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~  200 (242)
T 3l8d_A          132 P--LRALNEIKRVLKSDGYACIAILGPTAKPR---ENSYPRLYG------KDVVCNTMMPWEFEQLVKEQGFKVVDGIGV  200 (242)
T ss_dssp             H--HHHHHHHHHHEEEEEEEEEEEECTTCGGG---GGGGGGGGT------CCCSSCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             H--HHHHHHHHHHhCCCeEEEEEEcCCcchhh---hhhhhhhcc------ccccccCCCHHHHHHHHHHcCCEEEEeecc
Confidence            6  48999999999999999998864432210   011111110      011234468999999999999999998865


Q ss_pred             c
Q 043063          299 L  299 (301)
Q Consensus       299 ~  299 (301)
                      .
T Consensus       201 ~  201 (242)
T 3l8d_A          201 Y  201 (242)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.40  E-value=2.1e-13  Score=116.09  Aligned_cols=133  Identities=15%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCC--CceeEEeCCCCccCCc--ccEeeHhhhhccCChHHH
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI--PGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~--~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~~~  221 (301)
                      +..+|||||||+|             +++|. +.+++.+++.  .+++++.+|+.+..+.  .|+|++.++||+++|.  
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~--  119 (250)
T 2p7i_A           42 RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP--  119 (250)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH--
T ss_pred             CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcCH--
Confidence            4568999999996             57787 7777776542  2899999998766443  4999999999999886  


Q ss_pred             HHHHHHHH-HhCCCCCEEEEeccccCCCCCChHHhhh-hhh------ccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          222 KLIMENCY-KAIPAGGKLIACEPVLPDDSNESQRTRA-LLE------GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       222 ~~iL~~~~-~aL~pgg~lli~e~~~~~~~~~~~~~~~-~~~------~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      .++|++++ +.|+|||++++.++.....   ...... ...      +.-....  ......++.++|.++|+++||+++
T Consensus       120 ~~~l~~~~~~~LkpgG~l~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~Gf~~~  194 (250)
T 2p7i_A          120 VALLKRINDDWLAEGGRLFLVCPNANAV---SRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGLQVT  194 (250)
T ss_dssp             HHHHHHHHHTTEEEEEEEEEEEECTTCH---HHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHhcCCCCEEEEEcCChHHH---HHHHHHHcCccccchhccccccc--ccccccCCHHHHHHHHHHCCCeEE
Confidence            59999999 9999999999987633211   000000 000      0000000  122355799999999999999999


Q ss_pred             EEEEcc
Q 043063          294 RLYRVL  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      ++..+.
T Consensus       195 ~~~~~~  200 (250)
T 2p7i_A          195 YRSGIF  200 (250)
T ss_dssp             EEEEEE
T ss_pred             EEeeeE
Confidence            987654

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.40  E-value=8e-13  Score=111.61  Aligned_cols=137  Identities=18%  Similarity=0.117  Sum_probs=96.3

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCcc-CCc--ccEeeHh
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKS-IPA--ADAIFMK  210 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~-~p~--~D~v~~~  210 (301)
                      +...+|||||||+|             +++|. |.+++.+++           ..++++..+|+... ++.  .|+|++.
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  108 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ  108 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence            45679999999996             57787 777666543           13689999998764 443  4999999


Q ss_pred             hhhccCChH-HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh--h-----------hcccccc
Q 043063          211 WVLTTWTDD-ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI--Y-----------RAKGKHM  276 (301)
Q Consensus       211 ~vlh~~~d~-~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~--~-----------~~~g~~r  276 (301)
                      .++|++++. ...++|+++++.|+|||++++.+.......   +........++.....  .           ......+
T Consensus       109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (235)
T 3sm3_A          109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL---KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF  185 (235)
T ss_dssp             SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS---HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred             chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH---HHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence            999999864 466899999999999999999987664331   1111111111111100  0           0012357


Q ss_pred             CHHHHHHHHHhCCCCceEEEEc
Q 043063          277 TEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       277 t~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      +.++|.++|+++||+++++...
T Consensus       186 ~~~~l~~ll~~aGf~~~~~~~~  207 (235)
T 3sm3_A          186 TEKELVFLLTDCRFEIDYFRVK  207 (235)
T ss_dssp             CHHHHHHHHHTTTEEEEEEEEE
T ss_pred             CHHHHHHHHHHcCCEEEEEEec
Confidence            9999999999999999988653

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.39  E-value=2.3e-13  Score=118.28  Aligned_cols=136  Identities=18%  Similarity=0.295  Sum_probs=97.6

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~v  212 (301)
                      +.+..+|||||||+|               +++|. |.+++.+++      .+++++..+|+.+. ++.  .|+|++..+
T Consensus        35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  114 (276)
T 3mgg_A           35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV  114 (276)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence            567789999999995               56787 777776653      25899999999864 443  499999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC---CCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD---SNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~---~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      +|++++.+  .+|+++++.|+|||++++.+......   +......   .............++..++..+|.++|+++|
T Consensus       115 l~~~~~~~--~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG  189 (276)
T 3mgg_A          115 LEHLQSPE--EALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAI---EAWNCLIRVQAYMKGNSLVGRQIYPLLQESG  189 (276)
T ss_dssp             GGGCSCHH--HHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHH---HHHHHHHHHHHHTTCCTTGGGGHHHHHHHTT
T ss_pred             hhhcCCHH--HHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHH---HHHHHHHHHHHhcCCCcchHHHHHHHHHHCC
Confidence            99999864  89999999999999999988543211   1111111   1111111100133456678899999999999


Q ss_pred             CCceEEEEc
Q 043063          290 FPHLRLYRV  298 (301)
Q Consensus       290 f~~~~~~~~  298 (301)
                      |+++++.+.
T Consensus       190 f~~v~~~~~  198 (276)
T 3mgg_A          190 FEKIRVEPR  198 (276)
T ss_dssp             CEEEEEEEE
T ss_pred             CCeEEEeeE
Confidence            999988754

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.38  E-value=1e-12  Score=119.82  Aligned_cols=129  Identities=19%  Similarity=0.297  Sum_probs=96.9

Q ss_pred             CCcceEEeecCCce----------------eeeeh-hHHHhhCCCC--------------CceeEEeCCCCc-------c
Q 043063          159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPSI--------------PGVTHIGGDMFK-------S  200 (301)
Q Consensus       159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~~--------------~ri~~~~gd~~~-------~  200 (301)
                      .+..+|||||||+|                +++|+ |.+++.+++.              ++++|+.+|+.+       +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            35679999999996                46787 7777776542              699999999986       4


Q ss_pred             CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCH
Q 043063          201 IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE  278 (301)
Q Consensus       201 ~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~  278 (301)
                      ++.  .|+|++..++|+++|.  ..+|++++++|+|||+|++.+...+.... ...     ..+.....  ...+..++.
T Consensus       162 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~~~-~~~-----~~~~~~~~--~~~~~~~~~  231 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRDGGELYFSDVYADRRLS-EAA-----QQDPILYG--ECLGGALYL  231 (383)
T ss_dssp             CCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEESSCCC-HHH-----HHCHHHHH--TTCTTCCBH
T ss_pred             CCCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCCCCEEEEEEeccccccC-HhH-----hhhHHHhh--cccccCCCH
Confidence            443  4999999999999885  59999999999999999999987664321 111     11111221  223455789


Q ss_pred             HHHHHHHHhCCCCceEEEE
Q 043063          279 QEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       279 ~e~~~~l~~aGf~~~~~~~  297 (301)
                      ++|.++|+++||+.+++..
T Consensus       232 ~~~~~ll~~aGF~~v~~~~  250 (383)
T 4fsd_A          232 EDFRRLVAEAGFRDVRLVS  250 (383)
T ss_dssp             HHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHHHHCCCceEEEEe
Confidence            9999999999999887754

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.38  E-value=8.7e-13  Score=113.24  Aligned_cols=129  Identities=16%  Similarity=0.158  Sum_probs=95.6

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~v  212 (301)
                      ..+..+|||||||+|              +++|+ |.+++.+++       .+|++++.+|+.+. ++.  .|+|++..+
T Consensus        44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A           44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecCh
Confidence            556679999999995              56787 777776543       35799999999653 443  499999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH  292 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~  292 (301)
                      +|+++   ...+|+++++.|+|||++++.+.........  ..    ..+.....    ....++.++|.++|+++||++
T Consensus       124 l~~~~---~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~----~~~~~~~~----~~~~~~~~~~~~~l~~aGf~~  190 (257)
T 3f4k_A          124 IYNIG---FERGMNEWSKYLKKGGFIAVSEASWFTSERP--AE----IEDFWMDA----YPEISVIPTCIDKMERAGYTP  190 (257)
T ss_dssp             SCCCC---HHHHHHHHHTTEEEEEEEEEEEEEESSSCCC--HH----HHHHHHHH----CTTCCBHHHHHHHHHHTTEEE
T ss_pred             HhhcC---HHHHHHHHHHHcCCCcEEEEEEeeccCCCCh--HH----HHHHHHHh----CCCCCCHHHHHHHHHHCCCeE
Confidence            99993   3589999999999999999999764433211  11    11111111    123569999999999999999


Q ss_pred             eEEEEcc
Q 043063          293 LRLYRVL  299 (301)
Q Consensus       293 ~~~~~~~  299 (301)
                      +++..++
T Consensus       191 v~~~~~~  197 (257)
T 3f4k_A          191 TAHFILP  197 (257)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9988765

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.38  E-value=6.2e-13  Score=115.07  Aligned_cols=129  Identities=16%  Similarity=0.140  Sum_probs=96.8

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~v  212 (301)
                      ..+..+|||||||+|              +++|+ |.+++.+++       .++++++.+|+.+. ++.  .|+|++..+
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCC
Confidence            556789999999995              57788 777776653       26899999999764 443  499999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH  292 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~  292 (301)
                      +|++ +  ...+|+++++.|+|||++++.+...........      ..+.....    ....++.++|.++++++||++
T Consensus       124 ~~~~-~--~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~------~~~~~~~~----~~~~~~~~~~~~~l~~aGf~~  190 (267)
T 3kkz_A          124 IYNI-G--FERGLNEWRKYLKKGGYLAVSECSWFTDERPAE------INDFWMDA----YPEIDTIPNQVAKIHKAGYLP  190 (267)
T ss_dssp             GGGT-C--HHHHHHHHGGGEEEEEEEEEEEEEESSSCCCHH------HHHHHHHH----CTTCEEHHHHHHHHHHTTEEE
T ss_pred             ceec-C--HHHHHHHHHHHcCCCCEEEEEEeeecCCCChHH------HHHHHHHh----CCCCCCHHHHHHHHHHCCCEE
Confidence            9999 3  258999999999999999999987543321111      11111111    124568999999999999999


Q ss_pred             eEEEEcc
Q 043063          293 LRLYRVL  299 (301)
Q Consensus       293 ~~~~~~~  299 (301)
                      +++..++
T Consensus       191 v~~~~~~  197 (267)
T 3kkz_A          191 VATFILP  197 (267)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9998875

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.37  E-value=7.3e-13  Score=116.62  Aligned_cols=150  Identities=11%  Similarity=0.166  Sum_probs=98.7

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---------CceeEEeCCCCcc-CCc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---------PGVTHIGGDMFKS-IPA  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---------~ri~~~~gd~~~~-~p~  203 (301)
                      ...+++.++ . ...+|||||||+|             +++|+ |.+++.+++.         .+|+++.+|+.+. .+.
T Consensus        72 ~~~~~~~~~-~-~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  149 (299)
T 3g2m_A           72 AREFATRTG-P-VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDK  149 (299)
T ss_dssp             HHHHHHHHC-C-CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSC
T ss_pred             HHHHHHhhC-C-CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCC
Confidence            344445443 3 2349999999995             57898 7888777641         6899999999874 444


Q ss_pred             -ccEeeH-hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC----CCChHH-----hh-hhhh---------cc
Q 043063          204 -ADAIFM-KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD----SNESQR-----TR-ALLE---------GD  262 (301)
Q Consensus       204 -~D~v~~-~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~----~~~~~~-----~~-~~~~---------~d  262 (301)
                       .|+|++ ..++|++++++..++|++++++|+|||+|++.....+..    ......     .. ....         ..
T Consensus       150 ~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  229 (299)
T 3g2m_A          150 RFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYVLHVRHLPAEEIQE  229 (299)
T ss_dssp             CEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC-------------CCEEEEEEEEEEE
T ss_pred             CcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEEEEEEEeccccEEE
Confidence             498775 577888888888999999999999999999877644311    000000     00 0000         00


Q ss_pred             HHHHh---------hhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          263 IFVMT---------IYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       263 ~~m~~---------~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      +....         .....-+.+|.++|.++|+++||+++++.++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~  275 (299)
T 3g2m_A          230 ITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFA  275 (299)
T ss_dssp             EEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             EEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecC
Confidence            00000         00011224699999999999999999998875

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.37  E-value=3.1e-13  Score=112.71  Aligned_cols=125  Identities=18%  Similarity=0.146  Sum_probs=95.0

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCC-c-ccEeeHhhhhccCChHHH
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIP-A-ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~~~d~~~  221 (301)
                      +.+..+|||||||+|             +++|. +.+++.+++..++++..+|+....+ . .|+|++..++|++++++.
T Consensus        41 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~~~~  120 (211)
T 3e23_A           41 LPAGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRLGRPVRTMLFHQLDAIDAYDAVWAHACLLHVPRDEL  120 (211)
T ss_dssp             SCTTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCCCCSCEEEEEECSCGGGSCHHHH
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhcCCceEEeeeccCCCCCcEEEEEecCchhhcCHHHH
Confidence            345679999999996             56787 7788777655578888999865422 2 499999999999998888


Q ss_pred             HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC-CCceEEEEc
Q 043063          222 KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG-FPHLRLYRV  298 (301)
Q Consensus       222 ~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG-f~~~~~~~~  298 (301)
                      ..+|+++++.|+|||++++..........    .    ...        ..-..++.++|.++|+++| |+++++...
T Consensus       121 ~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----~----~~~--------~~~~~~~~~~~~~~l~~aG~f~~~~~~~~  182 (211)
T 3e23_A          121 ADVLKLIWRALKPGGLFYASYKSGEGEGR----D----KLA--------RYYNYPSEEWLRARYAEAGTWASVAVESS  182 (211)
T ss_dssp             HHHHHHHHHHEEEEEEEEEEEECCSSCEE----C----TTS--------CEECCCCHHHHHHHHHHHCCCSEEEEEEE
T ss_pred             HHHHHHHHHhcCCCcEEEEEEcCCCcccc----c----ccc--------hhccCCCHHHHHHHHHhCCCcEEEEEEec
Confidence            99999999999999999988553332100    0    000        0123359999999999999 999998764

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.37  E-value=3.5e-13  Score=112.09  Aligned_cols=121  Identities=10%  Similarity=0.055  Sum_probs=89.9

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------------------CCceeEEeCCCCcc-CC--
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------------------IPGVTHIGGDMFKS-IP--  202 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------------------~~ri~~~~gd~~~~-~p--  202 (301)
                      .....+|||||||+|             +++|+ +.+++.|++                  ..+|+++.+|+++. .+  
T Consensus        20 ~~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           20 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             cCCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            456689999999995             67898 788877653                  25899999999875 33  


Q ss_pred             c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHH
Q 043063          203 A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       203 ~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~  281 (301)
                      . .|+|++..++|++++++..+++++++++|+|||+++++....+.....+                   .....+.+|+
T Consensus       100 ~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~~~~-------------------~~~~~~~~el  160 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEG-------------------PPFSVPQTWL  160 (203)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSS-------------------CCCCCCHHHH
T ss_pred             CCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccccCC-------------------CCCCCCHHHH
Confidence            2 4999999999999988778899999999999999554443222110000                   0112488999


Q ss_pred             HHHHHhCCCCceEEEEc
Q 043063          282 KQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       282 ~~~l~~aGf~~~~~~~~  298 (301)
                      .+++++ ||++..+...
T Consensus       161 ~~~~~~-gf~i~~~~~~  176 (203)
T 1pjz_A          161 HRVMSG-NWEVTKVGGQ  176 (203)
T ss_dssp             HHTSCS-SEEEEEEEES
T ss_pred             HHHhcC-CcEEEEeccc
Confidence            999998 9988777654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.37  E-value=8.2e-13  Score=116.68  Aligned_cols=140  Identities=16%  Similarity=0.128  Sum_probs=96.3

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~  211 (301)
                      ..+..+|||||||+|                +++|. |.+++.+++       .+|++++.+|+.+. ++. .|+|++..
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~  195 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG  195 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence            456789999999995                46787 777776653       25699999999875 444 49999999


Q ss_pred             hhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChH--Hh-hh----hhhccHHHHhhhhcc--ccccCHHHH
Q 043063          212 VLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQ--RT-RA----LLEGDIFVMTIYRAK--GKHMTEQEF  281 (301)
Q Consensus       212 vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~--~~-~~----~~~~d~~m~~~~~~~--g~~rt~~e~  281 (301)
                      ++|++++.+ ...+|+++++.|+|||++++.+...+.......  .. ..    .......... ....  ...++.++|
T Consensus       196 ~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  274 (305)
T 3ocj_A          196 LNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTR-LIQPRWNALRTHAQT  274 (305)
T ss_dssp             SGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHH-TTCCSCCCCCCHHHH
T ss_pred             hhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHH-HHhhhhhccCCHHHH
Confidence            999997654 457999999999999999998876543321000  00 00    0000000100 0011  133699999


Q ss_pred             HHHHHhCCCCceEEEEc
Q 043063          282 KQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       282 ~~~l~~aGf~~~~~~~~  298 (301)
                      .++|+++||+++++...
T Consensus       275 ~~~l~~aGF~~v~~~~~  291 (305)
T 3ocj_A          275 RAQLEEAGFTDLRFEDD  291 (305)
T ss_dssp             HHHHHHTTCEEEEEECC
T ss_pred             HHHHHHCCCEEEEEEcc
Confidence            99999999999998754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.35  E-value=4.6e-13  Score=115.55  Aligned_cols=89  Identities=18%  Similarity=0.227  Sum_probs=72.7

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc-ccEeeHhh-hhccCCh-H
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA-ADAIFMKW-VLTTWTD-D  219 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~-~D~v~~~~-vlh~~~d-~  219 (301)
                      .+..+|||||||+|             +++|+ |.+++.+++ ..+++++.+|+.+. .+. .|+|++.. ++|++++ +
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~~  128 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQA  128 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHHH
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCHH
Confidence            35689999999996             57898 888887765 46899999999875 444 59999998 9999975 5


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      +..++|++++++|+|||++++.+...++
T Consensus       129 ~~~~~l~~~~~~L~pgG~l~i~~~~~~~  156 (263)
T 3pfg_A          129 ELDAALERFAAHVLPDGVVVVEPWWFPE  156 (263)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence            6779999999999999999997654443

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.35  E-value=7.8e-14  Score=117.44  Aligned_cols=85  Identities=16%  Similarity=0.253  Sum_probs=71.2

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCC
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~  217 (301)
                      ...+|||||||+|             +++|. |.+++.+++     ..+++++.+|+.+. ++.  .|+|++..++|.+.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~  117 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFE  117 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCC
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCC
Confidence            4679999999996             56787 777777654     27899999999874 453  59999999988888


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      .++..++|+++++.|+|||++++.++.
T Consensus       118 ~~~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          118 PLELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence            777889999999999999999998764

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.34  E-value=8.4e-13  Score=115.31  Aligned_cols=143  Identities=16%  Similarity=0.102  Sum_probs=97.8

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC-------CceeEEeCCCCcc--CCc--c
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-------PGVTHIGGDMFKS--IPA--A  204 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-------~ri~~~~gd~~~~--~p~--~  204 (301)
                      .++..++ . +..+|||||||+|             +++|. |.+++.+++.       ++++++.+|+.+.  ++.  .
T Consensus        60 ~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f  137 (285)
T 4htf_A           60 RVLAEMG-P-QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV  137 (285)
T ss_dssp             HHHHHTC-S-SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred             HHHHhcC-C-CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence            3444443 3 3579999999996             57898 7777776541       6899999998764  233  4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh------hhccccccCH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI------YRAKGKHMTE  278 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~------~~~~g~~rt~  278 (301)
                      |+|++..++|++++.  ..+|+++++.|+|||++++.+.......   ........+.......      .......++.
T Consensus       138 D~v~~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (285)
T 4htf_A          138 DLILFHAVLEWVADP--RSVLQTLWSVLRPGGVLSLMFYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLSPDYPRDP  212 (285)
T ss_dssp             EEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEEBHHHHH---HHHHHTTCHHHHHTTCCCC----CCCSCCBCH
T ss_pred             eEEEECchhhcccCH--HHHHHHHHHHcCCCeEEEEEEeCCchHH---HHHHHhcCHHHHhhhccccccccCCCCCCCCH
Confidence            999999999999886  5899999999999999999876432110   0000000001111000      0011245689


Q ss_pred             HHHHHHHHhCCCCceEEEEcc
Q 043063          279 QEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       279 ~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      ++|.++|+++||+++++..+.
T Consensus       213 ~~l~~~l~~aGf~v~~~~~~~  233 (285)
T 4htf_A          213 TQVYLWLEEAGWQIMGKTGVR  233 (285)
T ss_dssp             HHHHHHHHHTTCEEEEEEEES
T ss_pred             HHHHHHHHHCCCceeeeeeEE
Confidence            999999999999999888753

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.33  E-value=1.6e-12  Score=111.35  Aligned_cols=144  Identities=15%  Similarity=0.105  Sum_probs=95.5

Q ss_pred             HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~  208 (301)
                      .+.+.++ .....+|||||||+|              +++|. +.+++.+++   ..+++++.+|+.+. ++.  .|+|+
T Consensus        35 ~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  113 (253)
T 3g5l_A           35 ELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNVVL  113 (253)
T ss_dssp             HHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEEEE
T ss_pred             HHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEEEE
Confidence            3444443 445689999999996              56787 777777654   47899999999764 443  49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC------------CCCCChHHhhhhhhcc-----HHHHhhhhc
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP------------DDSNESQRTRALLEGD-----IFVMTIYRA  271 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~------------~~~~~~~~~~~~~~~d-----~~m~~~~~~  271 (301)
                      +..++|++++.  .++|+++++.|+|||++++......            ...... .......++     ..... ...
T Consensus       114 ~~~~l~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~  189 (253)
T 3g5l_A          114 SSLALHYIASF--DDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKL-HWPVDRYFNESMRTSHFLG-EDV  189 (253)
T ss_dssp             EESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEE-EEEECCTTCCCEEEEEETT-EEE
T ss_pred             EchhhhhhhhH--HHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceE-EEEeccccccceEEEeecc-ccC
Confidence            99999999774  5999999999999999998743211            000000 000000000     00000 011


Q ss_pred             cccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          272 KGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       272 ~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ....+|.++|.++|+++||+++++...
T Consensus       190 ~~~~~t~~~~~~~l~~aGF~~~~~~e~  216 (253)
T 3g5l_A          190 QKYHRTVTTYIQTLLKNGFQINSVIEP  216 (253)
T ss_dssp             EEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred             ccEecCHHHHHHHHHHcCCeeeeeecC
Confidence            122359999999999999999998743

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.33  E-value=1.7e-12  Score=113.42  Aligned_cols=136  Identities=17%  Similarity=0.188  Sum_probs=93.7

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~vl  213 (301)
                      ..+..+|||||||+|                +++|+ |.+++.+++     ..+++++.+|+.+. .+. .|+|++..++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l   99 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL   99 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCeeEEEECChh
Confidence            556789999999995                46787 677765543     23899999999864 444 5999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccc-----cC---CCCCChHHh-hhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPV-----LP---DDSNESQRT-RALLEGDIFVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~-----~~---~~~~~~~~~-~~~~~~d~~m~~~~~~~g~~rt~~e~~~~  284 (301)
                      |+++|.  .++|+++++.|+|||++++.++.     ..   ++.. .+.. ....+..+........+....+..++.++
T Consensus       100 ~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  176 (284)
T 3gu3_A          100 LHMTTP--ETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEK-QSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIY  176 (284)
T ss_dssp             GGCSSH--HHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSC-HHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHH
T ss_pred             hcCCCH--HHHHHHHHHHcCCCCEEEEEecchhcccccceecCcc-hhhccchHHHHHHHHHHhhhhcccccHHHHHHHH
Confidence            999886  49999999999999999999875     11   1111 1110 01111111111101223344567899999


Q ss_pred             HHhCCCCceEEE
Q 043063          285 GFSAGFPHLRLY  296 (301)
Q Consensus       285 l~~aGf~~~~~~  296 (301)
                      |+++||+.+++.
T Consensus       177 l~~aGF~~v~~~  188 (284)
T 3gu3_A          177 LSELGVKNIECR  188 (284)
T ss_dssp             HHHTTCEEEEEE
T ss_pred             HHHcCCCeEEEE
Confidence            999999988774

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.33  E-value=7.4e-13  Score=106.51  Aligned_cols=124  Identities=15%  Similarity=0.179  Sum_probs=95.4

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIFMKWVL  213 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~~~~vl  213 (301)
                      +++.++ ..+..+|||||||+|             +++|. +.+++.+++ .+++++..+|  .+++.  .|+|++..++
T Consensus         9 ~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~~~l   85 (170)
T 3i9f_A            9 YLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFANSF   85 (170)
T ss_dssp             THHHHH-SSCCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEESCS
T ss_pred             HHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEccch
Confidence            344443 567789999999996             56787 777777655 5799999999  34443  5999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      |++++.  ..+|+++++.|+|||++++.+........ .+.                 ....++.++|.++|+  ||+++
T Consensus        86 ~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~-----------------~~~~~~~~~~~~~l~--Gf~~~  143 (170)
T 3i9f_A           86 HDMDDK--QHVISEVKRILKDDGRVIIIDWRKENTGI-GPP-----------------LSIRMDEKDYMGWFS--NFVVE  143 (170)
T ss_dssp             TTCSCH--HHHHHHHHHHEEEEEEEEEEEECSSCCSS-SSC-----------------GGGCCCHHHHHHHTT--TEEEE
T ss_pred             hcccCH--HHHHHHHHHhcCCCCEEEEEEcCcccccc-Cch-----------------HhhhcCHHHHHHHHh--CcEEE
Confidence            999875  59999999999999999999887654321 110                 012258999999999  99999


Q ss_pred             EEEEcc
Q 043063          294 RLYRVL  299 (301)
Q Consensus       294 ~~~~~~  299 (301)
                      ++..+.
T Consensus       144 ~~~~~~  149 (170)
T 3i9f_A          144 KRFNPT  149 (170)
T ss_dssp             EEECSS
T ss_pred             EccCCC
Confidence            988765

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.33  E-value=2.4e-12  Score=112.14  Aligned_cols=142  Identities=14%  Similarity=0.088  Sum_probs=97.7

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc-ccEeeHhh
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA-ADAIFMKW  211 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~-~D~v~~~~  211 (301)
                      ..+++.++ ..+..+|||||||+|             +++|+ |.+++.+++ .+++++..+|+... ++. .|+|++..
T Consensus        47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~  125 (279)
T 3ccf_A           47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFSNA  125 (279)
T ss_dssp             CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEEES
T ss_pred             HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEEcc
Confidence            44555553 556789999999996             56787 777777654 36899999998764 443 59999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHH-hh----hhccccccCHHHHHHHHH
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVM-TI----YRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~-~~----~~~~g~~rt~~e~~~~l~  286 (301)
                      ++|+++|.  ..+|++++++|+|||++++........   .....  ........ ..    .......++.++|.++|+
T Consensus       126 ~l~~~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  198 (279)
T 3ccf_A          126 MLHWVKEP--EAAIASIHQALKSGGRFVAEFGGKGNI---KYILE--ALYNALETLGIHNPQALNPWYFPSIGEYVNILE  198 (279)
T ss_dssp             CGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECTTTT---HHHHH--HHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHH
T ss_pred             hhhhCcCH--HHHHHHHHHhcCCCcEEEEEecCCcch---HHHHH--HHHHHHHhcCCccccCcCceeCCCHHHHHHHHH
Confidence            99999875  489999999999999999876543221   11100  01110000 00    000113458999999999


Q ss_pred             hCCCCceEEEEc
Q 043063          287 SAGFPHLRLYRV  298 (301)
Q Consensus       287 ~aGf~~~~~~~~  298 (301)
                      ++||+++++...
T Consensus       199 ~aGf~~~~~~~~  210 (279)
T 3ccf_A          199 KQGFDVTYAALF  210 (279)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HcCCEEEEEEEe
Confidence            999999887643

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.31  E-value=5.4e-12  Score=107.15  Aligned_cols=145  Identities=19%  Similarity=0.193  Sum_probs=95.5

Q ss_pred             HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~  208 (301)
                      .+...++ .....+|||||||+|              +++|. +.+++.+++   ..+++++.+|+.+. ++.  .|+|+
T Consensus        34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~  112 (243)
T 3bkw_A           34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLAY  112 (243)
T ss_dssp             HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEEE
T ss_pred             HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEEE
Confidence            3444443 445689999999995              46787 777776653   25799999998764 443  49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC--CCCCCh-----------HHhhhhh--hccHHHHhhhhccc
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP--DDSNES-----------QRTRALL--EGDIFVMTIYRAKG  273 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~--~~~~~~-----------~~~~~~~--~~d~~m~~~~~~~g  273 (301)
                      +..++|++++.  ..+|+++++.|+|||++++......  ......           +......  ......+. .....
T Consensus       113 ~~~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  189 (243)
T 3bkw_A          113 SSLALHYVEDV--ARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA-KGVVK  189 (243)
T ss_dssp             EESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH-HSCCE
T ss_pred             EeccccccchH--HHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc-CceEE
Confidence            99999999864  5999999999999999998764211  000000           0000000  00000010 01122


Q ss_pred             cccCHHHHHHHHHhCCCCceEEEEc
Q 043063          274 KHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       274 ~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ..+|.++|.++|+++||+++++...
T Consensus       190 ~~~t~~~~~~~l~~aGF~~~~~~~~  214 (243)
T 3bkw_A          190 HHRTVGTTLNALIRSGFAIEHVEEF  214 (243)
T ss_dssp             EECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred             EeccHHHHHHHHHHcCCEeeeeccC
Confidence            3469999999999999999998764

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.30  E-value=3.1e-12  Score=107.38  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=93.7

Q ss_pred             cceEEeecCCce---------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHH
Q 043063          161 VKRLVDVGGSAG---------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMEN  227 (301)
Q Consensus       161 ~~~vlDvGgG~g---------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~  227 (301)
                      ..+|||||||+|         +++|. +.+++.+++. +++++.+|+.+. ++.  .|+|++..++|++++.  ..+|++
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~~~vD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~  124 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARKR-GVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALKE  124 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHHT-TCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHHH
T ss_pred             CCcEEEeCCCCCHHHHHHHHHhccCCCHHHHHHHHhc-CCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--HHHHHH
Confidence            679999999997         67887 7777776655 899999998764 443  4999999999999875  589999


Q ss_pred             HHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          228 CYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       228 ~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      ++++|+|||++++.+.....     +......... .... .......++.++|.++|+++||+++++....
T Consensus       125 ~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~-~~~~-~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~~  189 (219)
T 1vlm_A          125 AYRILKKGGYLIVGIVDRES-----FLGREYEKNK-EKSV-FYKNARFFSTEELMDLMRKAGFEEFKVVQTL  189 (219)
T ss_dssp             HHHHEEEEEEEEEEEECSSS-----HHHHHHHHTT-TC-C-CSTTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             HHHHcCCCcEEEEEEeCCcc-----HHHHHHHHHh-cCcc-hhcccccCCHHHHHHHHHHCCCeEEEEeccc
Confidence            99999999999998764321     1111111100 0000 0112345699999999999999999887654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.28  E-value=4.7e-12  Score=107.98  Aligned_cols=134  Identities=13%  Similarity=0.047  Sum_probs=94.8

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc-------ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA-------ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~-------~D~v~~~~v  212 (301)
                      .....+|||||||+|             +++|. |.+++.+++   ..+++++.+|+.+. .+.       .|+|++..+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~  133 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMRTG  133 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESS
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEcch
Confidence            345678999999996             57787 777777653   35899999999874 221       489999999


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhh-------ccHHHHhhhhccccccCHHHHHHHH
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLE-------GDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~-------~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++++++..++|++++++|+|||+++|.+...++..   ........       ....+-.  .......+.+++.++|
T Consensus       134 ~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  208 (245)
T 3ggd_A          134 FHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCID---FFNSLLEKYGQLPYELLLVMEH--GIRPGIFTAEDIELYF  208 (245)
T ss_dssp             STTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHHH---HHHHHHHHHSSCCHHHHHHHTT--TCCCCCCCHHHHHHHC
T ss_pred             hhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCccccH---HHHHHHhCCCCCchhhhhcccc--CCCCCccCHHHHHHHh
Confidence            9999988888999999999999999999998654210   00000000       0000000  0111235899999999


Q ss_pred             HhCCCCceEEEEc
Q 043063          286 FSAGFPHLRLYRV  298 (301)
Q Consensus       286 ~~aGf~~~~~~~~  298 (301)
                        +||++++...+
T Consensus       209 --aGf~~~~~~~~  219 (245)
T 3ggd_A          209 --PDFEILSQGEG  219 (245)
T ss_dssp             --TTEEEEEEECC
T ss_pred             --CCCEEEecccc
Confidence              99999887654

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.28  E-value=9.3e-12  Score=106.97  Aligned_cols=134  Identities=11%  Similarity=0.041  Sum_probs=90.5

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      ..+..+|||||||+|             +++|. +.+++.+++     ..+++++.+|+.+. ++.  .|+|++..++|+
T Consensus        37 ~~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  116 (263)
T 2yqz_A           37 KGEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHL  116 (263)
T ss_dssp             SSSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCchhh
Confidence            456789999999996             46787 777766543     36899999999654 444  499999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhc---cccccCHHHHHHHHHhCCCCc
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA---KGKHMTEQEFKQLGFSAGFPH  292 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~---~g~~rt~~e~~~~l~~aGf~~  292 (301)
                      ++|.  ..+|+++++.|+|||++++. . ...+ . .+.......+.-.+......   .....+.++|.++|+++||++
T Consensus       117 ~~~~--~~~l~~~~~~L~pgG~l~~~-~-~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~  190 (263)
T 2yqz_A          117 VPDW--PKVLAEAIRVLKPGGALLEG-W-DQAE-A-SPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP  190 (263)
T ss_dssp             CTTH--HHHHHHHHHHEEEEEEEEEE-E-EEEC-C-CHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             cCCH--HHHHHHHHHHCCCCcEEEEE-e-cCCC-c-cHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCc
Confidence            9874  58999999999999999988 2 2111 1 11100111111111100000   113458999999999999998


Q ss_pred             eEEEE
Q 043063          293 LRLYR  297 (301)
Q Consensus       293 ~~~~~  297 (301)
                      +.+..
T Consensus       191 ~~~~~  195 (263)
T 2yqz_A          191 RTREV  195 (263)
T ss_dssp             EEEEE
T ss_pred             ceEEE
Confidence            76543

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.27  E-value=3.9e-12  Score=107.81  Aligned_cols=89  Identities=18%  Similarity=0.259  Sum_probs=71.4

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc-ccEeeH-hhhhccCCh-H
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA-ADAIFM-KWVLTTWTD-D  219 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~-~D~v~~-~~vlh~~~d-~  219 (301)
                      .+..+|||||||+|             +++|. |.+++.+++ .++++++.+|+.+. .+. .|+|++ ..++|++++ +
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~~~  118 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKTTE  118 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCSHH
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCCHH
Confidence            35679999999996             56788 788877764 36899999999764 433 599994 559998864 6


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          220 ECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      +..++|+++++.|+|||++++.+...++
T Consensus       119 ~~~~~l~~~~~~L~pgG~l~~~~~~~~~  146 (239)
T 3bxo_A          119 ELGAAVASFAEHLEPGGVVVVEPWWFPE  146 (239)
T ss_dssp             HHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred             HHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence            6789999999999999999998766554

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.25  E-value=5.6e-12  Score=105.93  Aligned_cols=142  Identities=20%  Similarity=0.212  Sum_probs=95.5

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc---CCc--ccEee
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS---IPA--ADAIF  208 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~---~p~--~D~v~  208 (301)
                      ...+++.++  .+..+|||||||+|             +++|. +.+++.+++.. .++..+|+.+.   ++.  .|+|+
T Consensus        22 ~~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~fD~v~   98 (230)
T 3cc8_A           22 NPNLLKHIK--KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL-DHVVLGDIETMDMPYEEEQFDCVI   98 (230)
T ss_dssp             CHHHHTTCC--TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS-SEEEESCTTTCCCCSCTTCEEEEE
T ss_pred             HHHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC-CcEEEcchhhcCCCCCCCccCEEE
Confidence            344555552  45689999999996             56787 77777665432 37888998752   443  49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhh-hhhccH---HHHhhhhccccccCHHHHHHH
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA-LLEGDI---FVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~-~~~~d~---~m~~~~~~~g~~rt~~e~~~~  284 (301)
                      +..++|++++.  ..+|+++++.|+|||++++..+.....   ...... ...+..   ....  ......++.++|.++
T Consensus        99 ~~~~l~~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  171 (230)
T 3cc8_A           99 FGDVLEHLFDP--WAVIEKVKPYIKQNGVILASIPNVSHI---SVLAPLLAGNWTYTEYGLLD--KTHIRFFTFNEMLRM  171 (230)
T ss_dssp             EESCGGGSSCH--HHHHHHTGGGEEEEEEEEEEEECTTSH---HHHHHHHTTCCCCBSSSTTB--TTCCCCCCHHHHHHH
T ss_pred             ECChhhhcCCH--HHHHHHHHHHcCCCCEEEEEeCCcchH---HHHHHHhcCCceeccCCCCC--cceEEEecHHHHHHH
Confidence            99999999886  499999999999999999987543211   000000 000000   0000  011244699999999


Q ss_pred             HHhCCCCceEEEEcc
Q 043063          285 GFSAGFPHLRLYRVL  299 (301)
Q Consensus       285 l~~aGf~~~~~~~~~  299 (301)
                      |+++||+++++..+.
T Consensus       172 l~~~Gf~~~~~~~~~  186 (230)
T 3cc8_A          172 FLKAGYSISKVDRVY  186 (230)
T ss_dssp             HHHTTEEEEEEEEEE
T ss_pred             HHHcCCeEEEEEecc
Confidence            999999999988754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.24  E-value=1.5e-12  Score=109.16  Aligned_cols=133  Identities=14%  Similarity=0.016  Sum_probs=92.7

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-----CC-c-ccEeeHhhhhccCC
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-----IP-A-ADAIFMKWVLTTWT  217 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-----~p-~-~D~v~~~~vlh~~~  217 (301)
                      ....+|||||||+|             +++|. +.+++.+++..++++..+|+...     .+ . .|+|++..++| ++
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l~-~~  129 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDLICANFALL-HQ  129 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEEEEEESCCC-SS
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccEEEECchhh-hh
Confidence            34589999999996             57798 78888887778889998887643     22 2 59999999999 66


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhh----hhccccccCHHHHHHHHHhCCCCce
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTI----YRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~----~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      +.  ..+|+++++.|+|||++++.+........ .+.  ...+........    .......+|.++|.++|+++||+++
T Consensus       130 ~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~  204 (227)
T 3e8s_A          130 DI--IELLSAMRTLLVPGGALVIQTLHPWSVAD-GDY--QDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLV  204 (227)
T ss_dssp             CC--HHHHHHHHHTEEEEEEEEEEECCTTTTCT-TCC--SCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEEEE
T ss_pred             hH--HHHHHHHHHHhCCCeEEEEEecCccccCc-ccc--ccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCeEE
Confidence            54  59999999999999999998875543211 000  000000000000    0011234699999999999999999


Q ss_pred             EEEE
Q 043063          294 RLYR  297 (301)
Q Consensus       294 ~~~~  297 (301)
                      ++..
T Consensus       205 ~~~~  208 (227)
T 3e8s_A          205 SLQE  208 (227)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8875

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.24  E-value=3.3e-12  Score=112.20  Aligned_cols=102  Identities=15%  Similarity=0.160  Sum_probs=67.6

Q ss_pred             CceeEEeCCCCccC------Cc--ccEeeHhhhhccC----ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh
Q 043063          188 PGVTHIGGDMFKSI------PA--ADAIFMKWVLTTW----TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT  255 (301)
Q Consensus       188 ~ri~~~~gd~~~~~------p~--~D~v~~~~vlh~~----~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~  255 (301)
                      .+|+|..+|+..+.      +.  .|+|++..++|++    +++...++|+++++.|+|||+|++...-..     .+. 
T Consensus       154 ~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~~~~~LkpGG~lil~~~~~~-----~y~-  227 (292)
T 3g07_A          154 NNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWS-----SYG-  227 (292)
T ss_dssp             TTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEECCCHH-----HHH-
T ss_pred             ccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHHHHHHhCCCcEEEEecCCch-----hhh-
Confidence            48999999998542      22  4999999999554    777889999999999999999988532111     000 


Q ss_pred             hhhhhccHHHHhhhhccccccCHHHHHHHHHh--CCCCceEEEEc
Q 043063          256 RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS--AGFPHLRLYRV  298 (301)
Q Consensus       256 ~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~--aGf~~~~~~~~  298 (301)
                      . ...+.-....  .........+++.++|.+  +||+.++++..
T Consensus       228 ~-~~~~~~~~~~--~~~~~~~~p~~~~~~L~~~~~GF~~~~~~~~  269 (292)
T 3g07_A          228 K-RKTLTETIYK--NYYRIQLKPEQFSSYLTSPDVGFSSYELVAT  269 (292)
T ss_dssp             T-TTTSCHHHHH--HHHHCCCCGGGHHHHHTSTTTCCCEEEEC--
T ss_pred             h-hhcccHHHHh--hhhcEEEcHHHHHHHHHhcCCCceEEEEecc
Confidence            0 0000000000  112233457899999999  99998887654

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.24  E-value=8.2e-12  Score=104.51  Aligned_cols=126  Identities=10%  Similarity=0.046  Sum_probs=85.6

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----------CceeEEeCCCCcc-CC--cccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IP--AADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----------~ri~~~~gd~~~~-~p--~~D~v~  208 (301)
                      .+..+|||||||+|               +++|. +.+++.+++.           .+++++.+|+... .+  ..|+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            34579999999995               56787 7777766531           2899999998543 33  259999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH----HH
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK----QL  284 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~----~~  284 (301)
                      +..++|++++++..++|+++++.|+|||.+++......       ...+.........  ........+.+++.    ++
T Consensus       108 ~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~-------~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~  178 (217)
T 3jwh_A          108 VIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEY-------NVKFANLPAGKLR--HKDHRFEWTRSQFQNWANKI  178 (217)
T ss_dssp             EESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHH-------HHHTC-------------CCSCBCHHHHHHHHHHH
T ss_pred             eHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCccc-------chhhccccccccc--ccccccccCHHHHHHHHHHH
Confidence            99999999998888999999999999997766544210       0000000000000  01123346899999    88


Q ss_pred             HHhCCCCce
Q 043063          285 GFSAGFPHL  293 (301)
Q Consensus       285 l~~aGf~~~  293 (301)
                      ++++||++.
T Consensus       179 ~~~~Gf~v~  187 (217)
T 3jwh_A          179 TERFAYNVQ  187 (217)
T ss_dssp             HHHSSEEEE
T ss_pred             HHHcCceEE
Confidence            889999764

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.23  E-value=1e-11  Score=108.89  Aligned_cols=127  Identities=13%  Similarity=0.065  Sum_probs=82.8

Q ss_pred             CCcceEEeecCCce---------------------eeeeh-hHHHhhCCC-------CCceeE--EeCCCCcc-------
Q 043063          159 KGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS-------IPGVTH--IGGDMFKS-------  200 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~-------~~ri~~--~~gd~~~~-------  200 (301)
                      .+..+|||||||+|                     +++|. +.+++.+++       ..++++  ..++..+.       
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            34679999999998                     45676 667765542       134444  45554321       


Q ss_pred             CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhh-ccccccC
Q 043063          201 IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYR-AKGKHMT  277 (301)
Q Consensus       201 ~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~-~~g~~rt  277 (301)
                      ++.  .|+|+++++||+++|.  .+.|+++++.|+|||++++.+...+ .   . ....   +.-....... .....++
T Consensus       131 ~~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~-~---~-~~~~---~~~~~~~~~~~~~~~~~~  200 (292)
T 2aot_A          131 KELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS-S---G-WDKL---WKKYGSRFPQDDLCQYIT  200 (292)
T ss_dssp             TCCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT-S---H-HHHH---HHHHGGGSCCCTTCCCCC
T ss_pred             cCCCceeEEEEeeeeeecCCH--HHHHHHHHHHcCCCcEEEEEEecCC-c---c-HHHH---HHHHHHhccCCCcccCCC
Confidence            123  4999999999999986  4899999999999999999864321 1   1 1111   1000000000 0123468


Q ss_pred             HHHHHHHHHhCCCCceEE
Q 043063          278 EQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       278 ~~e~~~~l~~aGf~~~~~  295 (301)
                      .++|.++|+++||+.+..
T Consensus       201 ~~~~~~~l~~aGf~~~~~  218 (292)
T 2aot_A          201 SDDLTQMLDNLGLKYECY  218 (292)
T ss_dssp             HHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHCCCceEEE
Confidence            999999999999998774

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.22  E-value=3.1e-12  Score=110.59  Aligned_cols=125  Identities=17%  Similarity=0.173  Sum_probs=87.4

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----C-------------------------------C
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----I-------------------------------P  188 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~-------------------------------~  188 (301)
                      .+..+|||||||+|              +++|. |.+++.+++    .                               .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            35679999999996              35687 666665432    0                               1


Q ss_pred             cee-EEeCCCCcc--C-----CcccEeeHhhhhccC-Ch-HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh
Q 043063          189 GVT-HIGGDMFKS--I-----PAADAIFMKWVLTTW-TD-DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL  258 (301)
Q Consensus       189 ri~-~~~gd~~~~--~-----p~~D~v~~~~vlh~~-~d-~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~  258 (301)
                      +|+ ++.+|+.+.  +     +..|+|+++.+||+. ++ ++..++|++++++|+|||+|++.+...+..    +     
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG~li~~~~~~~~~----~-----  204 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPS----Y-----  204 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE----E-----
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEeecCcc----c-----
Confidence            244 889999874  2     235999999999985 32 556789999999999999999987543211    0     


Q ss_pred             hhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          259 LEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       259 ~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                       ...   -  ........+.++|.++|+++||+++++...
T Consensus       205 -~~g---~--~~~~~~~~~~~~l~~~l~~aGF~i~~~~~~  238 (263)
T 2a14_A          205 -MVG---K--REFSCVALEKGEVEQAVLDAGFDIEQLLHS  238 (263)
T ss_dssp             -EET---T--EEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred             -eeC---C--eEeeccccCHHHHHHHHHHCCCEEEEEeec
Confidence             000   0  011123458999999999999999888653

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.22  E-value=3.5e-11  Score=103.69  Aligned_cols=126  Identities=15%  Similarity=0.204  Sum_probs=90.7

Q ss_pred             CcceEEeecCCc------------------eeeeeh-hHHHhhCCC------CCceeEEeCCCCcc---C--C---c-cc
Q 043063          160 GVKRLVDVGGSA------------------GINFDL-PEVVAEAPS------IPGVTHIGGDMFKS---I--P---A-AD  205 (301)
Q Consensus       160 ~~~~vlDvGgG~------------------g~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~--p---~-~D  205 (301)
                      +..+|||||||.                  .+.+|. |.|++.+++      ..+++|+.+|+.+.   +  |   . .|
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            568999999996                  145787 999998874      24799999999864   1  2   1 14


Q ss_pred             -----EeeHhhhhccCChHH-HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHH
Q 043063          206 -----AIFMKWVLTTWTDDE-CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQ  279 (301)
Q Consensus       206 -----~v~~~~vlh~~~d~~-~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~  279 (301)
                           ++++..+||+++|++ ...+|++++++|+|||+|++.+...+..+    . ......+.+...  ......||.+
T Consensus       158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p----~-~~~~~~~~~~~~--g~p~~~rs~~  230 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAP----Q-EVGRVAREYAAR--NMPMRLRTHA  230 (277)
T ss_dssp             TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSH----H-HHHHHHHHHHHT--TCCCCCCCHH
T ss_pred             cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCH----H-HHHHHHHHHHhc--CCCCccCCHH
Confidence                 688999999999976 57999999999999999999998766331    1 111122222111  1224568999


Q ss_pred             HHHHHHHhCCCCceE
Q 043063          280 EFKQLGFSAGFPHLR  294 (301)
Q Consensus       280 e~~~~l~~aGf~~~~  294 (301)
                      |+.++|.  ||..++
T Consensus       231 ei~~~f~--Glelve  243 (277)
T 3giw_A          231 EAEEFFE--GLELVE  243 (277)
T ss_dssp             HHHHTTT--TSEECT
T ss_pred             HHHHHhC--CCcccC
Confidence            9999994  998654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.22  E-value=1.1e-11  Score=106.36  Aligned_cols=139  Identities=15%  Similarity=0.141  Sum_probs=91.9

Q ss_pred             HhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCc--ccEeeHh
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPA--ADAIFMK  210 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~--~D~v~~~  210 (301)
                      .+++.++ .....+|||||||+|               +++|+ |.+++.+++ .++++++.+|+.+..+.  .|+|++.
T Consensus        24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~  102 (259)
T 2p35_A           24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWKPAQKADLLYAN  102 (259)
T ss_dssp             HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCCCSSCEEEEEEE
T ss_pred             HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcCccCCcCEEEEe
Confidence            3445553 556789999999995               56787 777777654 47899999998764333  4999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh---hccHHHHhhhhccccccCHHHHHHHHHh
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL---EGDIFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~---~~d~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                      .++|++++.  ..+|+++++.|+|||++++..+................   +....... .......++.++|.++|++
T Consensus       103 ~~l~~~~~~--~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~  179 (259)
T 2p35_A          103 AVFQWVPDH--LAVLSQLMDQLESGGVLAVQMPDNLQEPTHIAMHETADGGPWKDAFSGG-GLRRKPLPPPSDYFNALSP  179 (259)
T ss_dssp             SCGGGSTTH--HHHHHHHGGGEEEEEEEEEEEECCTTSHHHHHHHHHHHHSTTGGGC--------CCCCCHHHHHHHHGG
T ss_pred             CchhhCCCH--HHHHHHHHHhcCCCeEEEEEeCCCCCcHHHHHHHHHhcCcchHHHhccc-cccccCCCCHHHHHHHHHh
Confidence            999999874  58999999999999999998853321100000000000   00000000 0012345699999999999


Q ss_pred             CCCCc
Q 043063          288 AGFPH  292 (301)
Q Consensus       288 aGf~~  292 (301)
                      +||++
T Consensus       180 aGf~v  184 (259)
T 2p35_A          180 KSSRV  184 (259)
T ss_dssp             GEEEE
T ss_pred             cCCce
Confidence            99964

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.22  E-value=1.7e-11  Score=100.80  Aligned_cols=128  Identities=13%  Similarity=0.132  Sum_probs=95.3

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc-ccEe
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA-ADAI  207 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~-~D~v  207 (301)
                      .+++.++ ..+..+|||||||+|             +++|. +.+++.+++      .++++++.+|+.+. .+. .|+|
T Consensus        23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v  101 (199)
T 2xvm_A           23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFI  101 (199)
T ss_dssp             HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEE
T ss_pred             HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEE
Confidence            3444443 445679999999995             56787 777776653      24799999998764 433 5999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                      ++..++|++++++..++|+++++.|+|||++++.+........ .+                ......++.+++.++|++
T Consensus       102 ~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~-~~----------------~~~~~~~~~~~l~~~~~~  164 (199)
T 2xvm_A          102 LSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYP-CT----------------VGFPFAFKEGELRRYYEG  164 (199)
T ss_dssp             EEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-CC----------------SCCSCCBCTTHHHHHTTT
T ss_pred             EEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcC-CC----------------CCCCCccCHHHHHHHhcC
Confidence            9999999999877889999999999999999998876654311 00                001233588999999986


Q ss_pred             CCCCceEEEE
Q 043063          288 AGFPHLRLYR  297 (301)
Q Consensus       288 aGf~~~~~~~  297 (301)
                        |++++...
T Consensus       165 --f~~~~~~~  172 (199)
T 2xvm_A          165 --WERVKYNE  172 (199)
T ss_dssp             --SEEEEEEC
T ss_pred             --CeEEEecc
Confidence              88887654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.21  E-value=1.7e-11  Score=102.67  Aligned_cols=125  Identities=12%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----------CceeEEeCCCCcc-CCc--ccEeeH
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----------PGVTHIGGDMFKS-IPA--ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----------~ri~~~~gd~~~~-~p~--~D~v~~  209 (301)
                      +..+|||||||+|               +++|. +.+++.+++.           .+++++.+|+... .+.  .|+|++
T Consensus        29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  108 (219)
T 3jwg_A           29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATV  108 (219)
T ss_dssp             TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEE
Confidence            4579999999995               56787 7777776541           2899999998543 322  599999


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH----HHH
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK----QLG  285 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~----~~l  285 (301)
                      ..++|++++++..++|+++++.|+|||.+++...... ...      +.........  ........+.+++.    +++
T Consensus       109 ~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~-~~~------~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~l~  179 (219)
T 3jwg_A          109 IEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEY-NFH------YGNLFEGNLR--HRDHRFEWTRKEFQTWAVKVA  179 (219)
T ss_dssp             ESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGG-GGC------CCCT-----G--GGCCTTSBCHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhh-hhh------hcccCccccc--ccCceeeecHHHHHHHHHHHH
Confidence            9999999998888999999999999996655443211 100      0000000000  01123345888998    788


Q ss_pred             HhCCCCce
Q 043063          286 FSAGFPHL  293 (301)
Q Consensus       286 ~~aGf~~~  293 (301)
                      +++||++.
T Consensus       180 ~~~Gf~v~  187 (219)
T 3jwg_A          180 EKYGYSVR  187 (219)
T ss_dssp             HHHTEEEE
T ss_pred             HHCCcEEE
Confidence            89999554

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.21  E-value=2.2e-11  Score=105.46  Aligned_cols=144  Identities=10%  Similarity=0.070  Sum_probs=95.3

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hH------HHhhCCC-------CCceeEEeCC-CC
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PE------VVAEAPS-------IPGVTHIGGD-MF  198 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~------v~~~a~~-------~~ri~~~~gd-~~  198 (301)
                      .+++.++ ..+..+|||||||+|                +++|+ +.      +++.+++       .++|+++.+| +.
T Consensus        34 ~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  112 (275)
T 3bkx_A           34 AIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLS  112 (275)
T ss_dssp             HHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTT
T ss_pred             HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            4445554 667789999999995                45676 33      5555543       1689999998 54


Q ss_pred             cc---CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhh-hccHHHHhhhh--
Q 043063          199 KS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALL-EGDIFVMTIYR--  270 (301)
Q Consensus       199 ~~---~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~-~~d~~m~~~~~--  270 (301)
                      ..   ++.  .|+|++..++|++++.+  .+++.++..++|||++++.+...+.... ........ .....+.. ..  
T Consensus       113 ~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~gG~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~  188 (275)
T 3bkx_A          113 DDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAVCDHVDVAEWSMQPTAL-DQIGHLQAAMIQGLLYA-IAPS  188 (275)
T ss_dssp             TCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTTCSEEEEEEECSSCSSG-GGHHHHHHHHHHHHHHH-HSCC
T ss_pred             hccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCCCCEEEEEEecCCCCch-hhhhHHHHHHHHHHHhh-cccc
Confidence            33   333  49999999999999875  4778788878889999999987765421 11111100 00000000 00  


Q ss_pred             -cc--ccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          271 -AK--GKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       271 -~~--g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                       ..  ...++.++|.++++++||+++++.++
T Consensus       189 ~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~  219 (275)
T 3bkx_A          189 DVANIRTLITPDTLAQIAHDNTWTYTAGTIV  219 (275)
T ss_dssp             TTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred             ccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence             01  13579999999999999999987765

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.21  E-value=1.7e-11  Score=105.63  Aligned_cols=84  Identities=17%  Similarity=0.150  Sum_probs=71.4

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~  222 (301)
                      ...+|||||||+|             +++|. +.+++.+++.++|+++.+|+.+. +|.  .|+|++..++|.++.+   
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~---  115 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD---  115 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH---
T ss_pred             CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH---
Confidence            4568999999996             57898 88999999999999999998764 665  4999999999887643   


Q ss_pred             HHHHHHHHhCCCCCEEEEeccccC
Q 043063          223 LIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       223 ~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +++++++++|+|||+|+++....+
T Consensus       116 ~~~~e~~rvLkpgG~l~~~~~~~~  139 (257)
T 4hg2_A          116 RFWAELRRVARPGAVFAAVTYGLT  139 (257)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEECCC
T ss_pred             HHHHHHHHHcCCCCEEEEEECCCC
Confidence            789999999999999998876443

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.20  E-value=2.4e-11  Score=103.12  Aligned_cols=81  Identities=28%  Similarity=0.390  Sum_probs=65.9

Q ss_pred             CcceEEeecCCce------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhh-hhccC-C
Q 043063          160 GVKRLVDVGGSAG------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKW-VLTTW-T  217 (301)
Q Consensus       160 ~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~-vlh~~-~  217 (301)
                      ...+|||||||+|            +++|. |.+++.+++     ..+++++.+|+.+. .+. .|+|++.. ++|++ +
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~~~~~  112 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADHYEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDAITILCDSLNYLQT  112 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTTSEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEEEEECTTGGGGCCS
T ss_pred             CCCeEEEecCCCCHHHHHHhhCCeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCEEEEeCCchhhcCC
Confidence            4579999999996            46787 777777654     25799999998764 444 59999986 99988 5


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      .++...+|+++++.|+|||++++
T Consensus       113 ~~~~~~~l~~~~~~L~pgG~l~~  135 (243)
T 3d2l_A          113 EADVKQTFDSAARLLTDGGKLLF  135 (243)
T ss_dssp             HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhcCCCeEEEE
Confidence            56778999999999999999887

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.19  E-value=2e-11  Score=104.85  Aligned_cols=118  Identities=8%  Similarity=-0.028  Sum_probs=88.5

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----------------------CCceeEEeCCCCcc-C
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----------------------IPGVTHIGGDMFKS-I  201 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~~~~-~  201 (301)
                      ...+|||||||+|             +++|+ |.+++.|++                       ..+|+|+.+|+++. .
T Consensus        68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~~  147 (252)
T 2gb4_A           68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPR  147 (252)
T ss_dssp             CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGGG
T ss_pred             CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCCc
Confidence            5679999999995             67898 777776532                       25899999999875 3


Q ss_pred             C--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCH
Q 043063          202 P--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTE  278 (301)
Q Consensus       202 p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~  278 (301)
                      +  . .|+|+...+||++++++..++++++++.|+|||+++++....+.....+|                   ....+.
T Consensus       148 ~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~~~g~-------------------~~~~~~  208 (252)
T 2gb4_A          148 ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTKHAGP-------------------PFYVPS  208 (252)
T ss_dssp             GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTSCCCS-------------------SCCCCH
T ss_pred             ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCccCCCC-------------------CCCCCH
Confidence            2  2 49999999999999888889999999999999999766544332100000                   112489


Q ss_pred             HHHHHHHHhCCCCceEEEE
Q 043063          279 QEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       279 ~e~~~~l~~aGf~~~~~~~  297 (301)
                      +|+.++|+. +|+++.+..
T Consensus       209 ~el~~~l~~-~f~v~~~~~  226 (252)
T 2gb4_A          209 AELKRLFGT-KCSMQCLEE  226 (252)
T ss_dssp             HHHHHHHTT-TEEEEEEEE
T ss_pred             HHHHHHhhC-CeEEEEEec
Confidence            999999987 588877654

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=99.17  E-value=2.5e-11  Score=98.15  Aligned_cols=109  Identities=15%  Similarity=0.053  Sum_probs=85.2

Q ss_pred             CCCcceEEeecCCceeeeeh-hHHHhhCCC--CCceeEEeCCCCcc-C---Cc--ccEeeHhhhhccC-ChHHHHHHHHH
Q 043063          158 FKGVKRLVDVGGSAGINFDL-PEVVAEAPS--IPGVTHIGGDMFKS-I---PA--ADAIFMKWVLTTW-TDDECKLIMEN  227 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~---p~--~D~v~~~~vlh~~-~d~~~~~iL~~  227 (301)
                      .....+|||||||... +|. +.+++.+++  ..+++++.+|+.+. .   +.  .|+|++..++|++ ++.  .++|++
T Consensus        10 ~~~g~~vL~~~~g~v~-vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~~l~~   86 (176)
T 2ld4_A           10 ISAGQFVAVVWDKSSP-VEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHS--AEILAE   86 (176)
T ss_dssp             CCTTSEEEEEECTTSC-HHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCC--HHHHHH
T ss_pred             CCCCCEEEEecCCcee-eeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCH--HHHHHH
Confidence            5677899999999855 897 788887764  24699999998764 4   43  4999999999998 664  589999


Q ss_pred             HHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          228 CYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       228 ~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      +++.|+|||++++.++.......                     ....++.++|.++|+++||
T Consensus        87 ~~r~LkpgG~l~~~~~~~~~~~~---------------------~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           87 IARILRPGGCLFLKEPVETAVDN---------------------NSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             HHHHEEEEEEEEEEEEEESSSCS---------------------SSSSCCHHHHHHHHHHTTC
T ss_pred             HHHHCCCCEEEEEEccccccccc---------------------ccccCCHHHHHHHHHHCCC
Confidence            99999999999997664432100                     1123588999999999999

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.15  E-value=4.9e-11  Score=99.52  Aligned_cols=101  Identities=18%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             CCCcceEEeecCCcee----------eeehhHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHH
Q 043063          158 FKGVKRLVDVGGSAGI----------NFDLPEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLI  224 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g~----------~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~i  224 (301)
                      ..+..+|||||||+|.          ++|..+.        ++++..+|+.+. ++.  .|+|++..++| +++  ...+
T Consensus        65 ~~~~~~vLDiG~G~G~~~~~l~~~v~~~D~s~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~-~~~--~~~~  133 (215)
T 2zfu_A           65 RPASLVVADFGCGDCRLASSIRNPVHCFDLASL--------DPRVTVCDMAQVPLEDESVDVAVFCLSLM-GTN--IRDF  133 (215)
T ss_dssp             SCTTSCEEEETCTTCHHHHHCCSCEEEEESSCS--------STTEEESCTTSCSCCTTCEEEEEEESCCC-SSC--HHHH
T ss_pred             cCCCCeEEEECCcCCHHHHHhhccEEEEeCCCC--------CceEEEeccccCCCCCCCEeEEEEehhcc-ccC--HHHH
Confidence            3456799999999973          3444221        688899998764 443  49999999998 444  4699


Q ss_pred             HHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          225 MENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       225 L~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                      |+++++.|+|||++++.+....                            ..+.++|.++++++||++++...
T Consensus       134 l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~~~~  178 (215)
T 2zfu_A          134 LEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGFKIVSKDL  178 (215)
T ss_dssp             HHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTEEEEEEEC
T ss_pred             HHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCCEEEEEec
Confidence            9999999999999999875211                            01789999999999999887543

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.15  E-value=5.7e-11  Score=97.01  Aligned_cols=119  Identities=18%  Similarity=0.259  Sum_probs=92.6

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHh-
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMK-  210 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~-  210 (301)
                      .++..+  ..+..+|||||||+|             +++|. |.+++.+++ ..+++++.+|+.+. ++.  .|+|++. 
T Consensus        38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~~~  115 (195)
T 3cgg_A           38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVSAG  115 (195)
T ss_dssp             HHHHHH--SCTTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEECC
T ss_pred             HHHHHh--ccCCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEECC
Confidence            344444  346679999999995             56787 777776654 36799999999874 543  5999998 


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      .++|++++++...+|+++++.|+|||++++.....                            ..++.++|.++++++||
T Consensus       116 ~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~----------------------------~~~~~~~~~~~l~~~Gf  167 (195)
T 3cgg_A          116 NVMGFLAEDGREPALANIHRALGADGRAVIGFGAG----------------------------RGWVFGDFLEVAERVGL  167 (195)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEETT----------------------------SSCCHHHHHHHHHHHTE
T ss_pred             cHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCCC----------------------------CCcCHHHHHHHHHHcCC
Confidence            89999988888899999999999999998864311                            11378899999999999


Q ss_pred             CceEEEEc
Q 043063          291 PHLRLYRV  298 (301)
Q Consensus       291 ~~~~~~~~  298 (301)
                      ++.++...
T Consensus       168 ~~~~~~~~  175 (195)
T 3cgg_A          168 ELENAFES  175 (195)
T ss_dssp             EEEEEESS
T ss_pred             EEeeeecc
Confidence            98887543

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.15  E-value=9.1e-12  Score=103.35  Aligned_cols=134  Identities=10%  Similarity=0.014  Sum_probs=93.4

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~  216 (301)
                      +..+|||||||+|              +++|. +.+++.+++     ..+++++.+|+.+. ++.  .|+|++..++|++
T Consensus        23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  102 (209)
T 2p8j_A           23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIFHM  102 (209)
T ss_dssp             SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGGGS
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHHhC
Confidence            4579999999996              45687 777776653     26799999999764 543  4999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC-C-hHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN-E-SQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~-~-~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~  294 (301)
                      +.++..++|+++++.|+|||++++.+...++..- . .+....  .+...... ........+.+++.++|+++||...+
T Consensus       103 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~e~~~~~~~~g~~~~~  179 (209)
T 2p8j_A          103 RKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEG--EFLQLERG-EKVIHSYVSLEEADKYFKDMKVLFKE  179 (209)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETT--EEEECC-C-CCEEEEEECHHHHHHTTTTSEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccc--cceeccCC-CceeEEecCHHHHHHHHhhcCceeee
Confidence            8778889999999999999999999886654321 0 000000  00000000 00113456999999999999987665


Q ss_pred             EE
Q 043063          295 LY  296 (301)
Q Consensus       295 ~~  296 (301)
                      ..
T Consensus       180 ~~  181 (209)
T 2p8j_A          180 DR  181 (209)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.14  E-value=3.5e-11  Score=105.25  Aligned_cols=140  Identities=14%  Similarity=0.115  Sum_probs=94.1

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-C-Cc--ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I-PA--ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~-p~--~D~v~~~~  211 (301)
                      ..+..+|||||||+|              +++|. +.+++.+++       ..+++++.+|+.+. + +.  .|+|++..
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~  141 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF  141 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence            345679999999995              46787 777776653       15799999999874 4 33  49999999


Q ss_pred             hhcc--CChHHHHHHHHHHHHhCCCCCEEEEeccccCCC---------CC-----------ChHHhhhhhhccHHHHh-h
Q 043063          212 VLTT--WTDDECKLIMENCYKAIPAGGKLIACEPVLPDD---------SN-----------ESQRTRALLEGDIFVMT-I  268 (301)
Q Consensus       212 vlh~--~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~---------~~-----------~~~~~~~~~~~d~~m~~-~  268 (301)
                      ++|+  .+.++...+|+++++.|+|||++++..+..+.-         .+           .-|. .....+.+.... +
T Consensus       142 ~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~l~~~~  220 (298)
T 1ri5_A          142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPM-ESVREYRFTLLDSV  220 (298)
T ss_dssp             CGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCT-TTCCEEEEEETTSC
T ss_pred             hhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccc-cccceEEEEEchhh
Confidence            9998  566778899999999999999999887532100         00           0000 000000000000 0


Q ss_pred             hhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          269 YRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       269 ~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      .......++.++|.++++++||+++++.++
T Consensus       221 ~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~  250 (298)
T 1ri5_A          221 NNCIEYFVDFTRMVDGFKRLGLSLVERKGF  250 (298)
T ss_dssp             SSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred             cCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence            001124568999999999999999998765

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.13  E-value=4.2e-11  Score=101.66  Aligned_cols=82  Identities=21%  Similarity=0.177  Sum_probs=66.9

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCcc-CCc-ccEeeHhh-hhccCC
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA-ADAIFMKW-VLTTWT  217 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~-~p~-~D~v~~~~-vlh~~~  217 (301)
                      +..+|||||||+|             +++|. +.+++.+++.     .+++++.+|+.+. .+. .|+|++.. ++|+++
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~  116 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccccC
Confidence            4579999999996             56787 7777776542     2899999998764 444 59999998 999995


Q ss_pred             h-HHHHHHHHHHHHhCCCCCEEEEe
Q 043063          218 D-DECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       218 d-~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      + ++..++|+++++.|+|||++++.
T Consensus       117 ~~~~~~~~l~~~~~~L~pgG~l~~~  141 (246)
T 1y8c_A          117 DSDDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhcCCCcEEEEE
Confidence            4 66789999999999999999873

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.12  E-value=1.8e-11  Score=107.08  Aligned_cols=125  Identities=16%  Similarity=0.186  Sum_probs=86.4

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCCC--------------C----------------------
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI--------------P----------------------  188 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~--------------~----------------------  188 (301)
                      ...+|||||||+|              +++|+ +.+++.+++.              .                      
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            4579999999996              46687 6777654320              0                      


Q ss_pred             ceeEEeCCCCcc-------CCc--ccEeeHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhh
Q 043063          189 GVTHIGGDMFKS-------IPA--ADAIFMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA  257 (301)
Q Consensus       189 ri~~~~gd~~~~-------~p~--~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~  257 (301)
                      .++++.+|+.+.       ++.  .|+|++..+||+++++  +..++|++++++|+|||+|++.+.....-     . . 
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~-----~-~-  223 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESW-----Y-L-  223 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCE-----E-E-
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcce-----E-E-
Confidence            145666788762       222  5999999999985543  56799999999999999999986432110     0 0 


Q ss_pred             hhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          258 LLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       258 ~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                        ..+      .......++.++|.++|+++||+++++....
T Consensus       224 --~~~------~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~  257 (289)
T 2g72_A          224 --AGE------ARLTVVPVSEEEVREALVRSGYKVRDLRTYI  257 (289)
T ss_dssp             --ETT------EEEECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --cCC------eeeeeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence              000      0111234589999999999999999887654

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.11  E-value=2e-10  Score=105.73  Aligned_cols=137  Identities=16%  Similarity=0.163  Sum_probs=93.2

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCc----cCC---c-cc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFK----SIP---A-AD  205 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~----~~p---~-~D  205 (301)
                      ...+++.+. .....+|||||||+|             +++|. +.+++.+++. .+......+..    .+|   . .|
T Consensus        96 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-~~~~~~~~~~~~~~~~l~~~~~~fD  173 (416)
T 4e2x_A           96 ARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-GIRVRTDFFEKATADDVRRTEGPAN  173 (416)
T ss_dssp             HHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-TCCEECSCCSHHHHHHHHHHHCCEE
T ss_pred             HHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-CCCcceeeechhhHhhcccCCCCEE
Confidence            345666664 667789999999996             57787 7778777654 33333322211    122   2 59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++.++||+++|.  ..+|+++++.|+|||++++..+....-     . .. ..++...    ......++.++|.+++
T Consensus       174 ~I~~~~vl~h~~d~--~~~l~~~~r~LkpgG~l~i~~~~~~~~-----~-~~-~~~~~~~----~~~~~~~s~~~l~~ll  240 (416)
T 4e2x_A          174 VIYAANTLCHIPYV--QSVLEGVDALLAPDGVFVFEDPYLGDI-----V-AK-TSFDQIF----DEHFFLFSATSVQGMA  240 (416)
T ss_dssp             EEEEESCGGGCTTH--HHHHHHHHHHEEEEEEEEEEEECHHHH-----H-HH-TCGGGCS----TTCCEECCHHHHHHHH
T ss_pred             EEEECChHHhcCCH--HHHHHHHHHHcCCCeEEEEEeCChHHh-----h-hh-cchhhhh----hhhhhcCCHHHHHHHH
Confidence            99999999999875  599999999999999999875532210     0 00 0111100    1123456999999999


Q ss_pred             HhCCCCceEEEEcc
Q 043063          286 FSAGFPHLRLYRVL  299 (301)
Q Consensus       286 ~~aGf~~~~~~~~~  299 (301)
                      +++||+++++..++
T Consensus       241 ~~aGf~~~~~~~~~  254 (416)
T 4e2x_A          241 QRCGFELVDVQRLP  254 (416)
T ss_dssp             HHTTEEEEEEEEEC
T ss_pred             HHcCCEEEEEEEcc
Confidence            99999999988754

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.10  E-value=5.6e-11  Score=102.16  Aligned_cols=126  Identities=16%  Similarity=0.200  Sum_probs=89.3

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CC-------------------------------
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IP-------------------------------  188 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~-------------------------------  188 (301)
                      ....+|||||||+|              +++|. +.+++.+++    ..                               
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            35679999999995              45687 667766542    11                               


Q ss_pred             ce-eEEeCCCCcc--CC----c-ccEeeHhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhh
Q 043063          189 GV-THIGGDMFKS--IP----A-ADAIFMKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRAL  258 (301)
Q Consensus       189 ri-~~~~gd~~~~--~p----~-~D~v~~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~  258 (301)
                      ++ +++.+|+.+.  .+    . .|+|++..+||++++.  +...+|+++++.|+|||+|++.+......     .    
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~-----~----  205 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY-----Y----  205 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE-----E----
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce-----E----
Confidence            28 9999999864  22    2 4999999999955432  56799999999999999999988533210     0    


Q ss_pred             hhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          259 LEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       259 ~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      ...+      ........+.++|.++|+++||+++++....
T Consensus       206 ~~~~------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~  240 (265)
T 2i62_A          206 MIGE------QKFSSLPLGWETVRDAVEEAGYTIEQFEVIS  240 (265)
T ss_dssp             EETT------EEEECCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             EcCC------ccccccccCHHHHHHHHHHCCCEEEEEEEec
Confidence            0000      0111234589999999999999999887643

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.07  E-value=1.6e-10  Score=95.41  Aligned_cols=118  Identities=12%  Similarity=0.094  Sum_probs=86.3

Q ss_pred             eEEeecCCce-------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHH
Q 043063          163 RLVDVGGSAG-------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDE  220 (301)
Q Consensus       163 ~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~  220 (301)
                      +|||||||+|             +++|. +.+++.+++.     .+++++.+|+.+. ++.  .|+|++.  +++++.++
T Consensus        32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~~~  109 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPSSL  109 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCHHH
T ss_pred             CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCHHH
Confidence            9999999995             56787 7777776542     3899999999765 443  4999984  34567777


Q ss_pred             HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          221 CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       221 ~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ...+|+++++.|+|||++++.+......     .  ......       ......++.+++.++|+  ||+++++...
T Consensus       110 ~~~~l~~~~~~L~pgG~l~~~~~~~~~~-----~--~~~~~~-------~~~~~~~~~~~l~~~l~--Gf~v~~~~~~  171 (202)
T 2kw5_A          110 RQQLYPKVYQGLKPGGVFILEGFAPEQL-----Q--YNTGGP-------KDLDLLPKLETLQSELP--SLNWLIANNL  171 (202)
T ss_dssp             HHHHHHHHHTTCCSSEEEEEEEECTTTG-----G--GTSCCS-------SSGGGCCCHHHHHHHCS--SSCEEEEEEE
T ss_pred             HHHHHHHHHHhcCCCcEEEEEEeccccc-----c--CCCCCC-------CcceeecCHHHHHHHhc--CceEEEEEEE
Confidence            8899999999999999999988754321     0  000000       01123569999999999  9999987764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.04  E-value=1.9e-10  Score=95.94  Aligned_cols=86  Identities=22%  Similarity=0.327  Sum_probs=70.6

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~  217 (301)
                      ..+..+|||||||+|             +++|. +.+++.+++    .++++++.+|+.+..+.  .|+|++..++|+++
T Consensus        49 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~~~  128 (216)
T 3ofk_A           49 SGAVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYYLE  128 (216)
T ss_dssp             TSSEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGGSS
T ss_pred             cCCCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHhCC
Confidence            445789999999996             56787 777766543    46899999999875433  59999999999999


Q ss_pred             h-HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          218 D-DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       218 d-~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      + +...++|+++++.|+|||++++...
T Consensus       129 ~~~~~~~~l~~~~~~L~pgG~l~~~~~  155 (216)
T 3ofk_A          129 DMTQMRTAIDNMVKMLAPGGHLVFGSA  155 (216)
T ss_dssp             SHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence            7 5566899999999999999998765

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.04  E-value=4.7e-11  Score=104.44  Aligned_cols=85  Identities=19%  Similarity=0.247  Sum_probs=69.0

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc----CCc--ccEee
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS----IPA--ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~----~p~--~D~v~  208 (301)
                      .+..+|||||||+|             +++|+ |.+++.+++          ..++.+..+|+...    ++.  .|+|+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~  135 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  135 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence            35679999999996             57898 777777642          25788999998752    233  49999


Q ss_pred             Hh-hhhccCCh-----HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MK-WVLTTWTD-----DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~-~vlh~~~d-----~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +. +++|++++     ++..++|+++++.|+|||++++..+
T Consensus       136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  176 (293)
T 3thr_A          136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR  176 (293)
T ss_dssp             ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            98 89999998     7778999999999999999998764

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.02  E-value=3.8e-10  Score=93.72  Aligned_cols=120  Identities=14%  Similarity=0.120  Sum_probs=83.6

Q ss_pred             CcceEEeecCCce-----------eeeeh-hHHHhhCCCC-CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHH
Q 043063          160 GVKRLVDVGGSAG-----------INFDL-PEVVAEAPSI-PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKL  223 (301)
Q Consensus       160 ~~~~vlDvGgG~g-----------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~  223 (301)
                      +..+|||||||+|           +++|. +.+++.+++. .+++++.+|+.+. ++.  .|+|++..++|++++.  .+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~~  113 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRLPYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVLLFTTLEFVEDV--ER  113 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHCCCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEEEESCTTTCSCH--HH
T ss_pred             CCCeEEEECCCCCHhHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEEEcChhhhcCCH--HH
Confidence            5679999999996           45677 7777766543 6899999998764 444  4999999999999875  58


Q ss_pred             HHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          224 IMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       224 iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      +|+++++.|+|||++++.+.....     +.............. .......+|.+++.++|+  |
T Consensus       114 ~l~~~~~~L~pgG~l~i~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~~~~s~~~l~~~l~--G  171 (211)
T 2gs9_A          114 VLLEARRVLRPGGALVVGVLEALS-----PWAALYRRLGEKGVL-PWAQARFLAREDLKALLG--P  171 (211)
T ss_dssp             HHHHHHHHEEEEEEEEEEEECTTS-----HHHHHHHHHHHTTCT-TGGGCCCCCHHHHHHHHC--S
T ss_pred             HHHHHHHHcCCCCEEEEEecCCcC-----cHHHHHHHHhhccCc-cccccccCCHHHHHHHhc--C
Confidence            999999999999999998864321     111110000000000 011244579999999998  7

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.01  E-value=2.7e-10  Score=103.11  Aligned_cols=97  Identities=16%  Similarity=0.279  Sum_probs=73.3

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC---------------CCceeEEeCCC
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------------IPGVTHIGGDM  197 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------------~~ri~~~~gd~  197 (301)
                      ..+++.+. .....+|||||||+|               +++|+ |.+++.|++               .++|+|+.||+
T Consensus       163 ~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~  241 (438)
T 3uwp_A          163 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  241 (438)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCT
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcc
Confidence            44555554 677889999999995               56787 555544432               37899999999


Q ss_pred             Ccc-CC----cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC
Q 043063          198 FKS-IP----AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS  249 (301)
Q Consensus       198 ~~~-~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~  249 (301)
                      ++. ++    .+|+|++..+++ ++  +....|+++++.|+|||+|++.|.+.+++.
T Consensus       242 ~~lp~~d~~~~aDVVf~Nn~~F-~p--dl~~aL~Ei~RvLKPGGrIVssE~f~p~d~  295 (438)
T 3uwp_A          242 LSEEWRERIANTSVIFVNNFAF-GP--EVDHQLKERFANMKEGGRIVSSKPFAPLNF  295 (438)
T ss_dssp             TSHHHHHHHHTCSEEEECCTTC-CH--HHHHHHHHHHTTSCTTCEEEESSCSSCTTC
T ss_pred             cCCccccccCCccEEEEccccc-Cc--hHHHHHHHHHHcCCCCcEEEEeecccCCCC
Confidence            875 42    469999877763 33  346778999999999999999999888653

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.01  E-value=2.4e-10  Score=100.40  Aligned_cols=83  Identities=20%  Similarity=0.174  Sum_probs=67.7

Q ss_pred             CCcceEEeecCCce----------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCcc-CCc--------c
Q 043063          159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKS-IPA--------A  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~-~p~--------~  204 (301)
                      .+..+|||||||+|                +++|+ |.+++.+++        ..+++|+.+|+.+. ++.        .
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            46789999999995                46787 777777653        46999999999863 332        4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      |+|++..++|++ +  ..++|+++++.|+|||+|++.+..
T Consensus       115 D~V~~~~~l~~~-~--~~~~l~~~~~~LkpgG~l~i~~~~  151 (299)
T 3g5t_A          115 DMITAVECAHWF-D--FEKFQRSAYANLRKDGTIAIWGYA  151 (299)
T ss_dssp             EEEEEESCGGGS-C--HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             eEEeHhhHHHHh-C--HHHHHHHHHHhcCCCcEEEEEecC
Confidence            999999999999 4  469999999999999999995543

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.99  E-value=7.3e-11  Score=100.35  Aligned_cols=118  Identities=17%  Similarity=0.160  Sum_probs=79.0

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCc---cCCc--ccEee-----
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFK---SIPA--ADAIF-----  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~---~~p~--~D~v~-----  208 (301)
                      ....+|||||||+|              +++|+ |.+++.|++     ..+++++.+|...   +++.  .|.|+     
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~~  138 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeeee
Confidence            35689999999996              57787 888888764     3578888888643   2443  25554     


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhcc-HHHHhhhhccccccCHHHHHHHHHh
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGD-IFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d-~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                      ....++++++.  ..+++++++.|||||+|++++.....       ......++ ...          ...+.+...|.+
T Consensus       139 ~~~~~~~~~~~--~~~~~e~~rvLkPGG~l~f~~~~~~~-------~~~~~~~~~~~~----------~~~~~~~~~L~e  199 (236)
T 3orh_A          139 LSEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSKYSDITI----------MFEETQVPALLE  199 (236)
T ss_dssp             CBGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTTCSCHHH----------HHHHHTHHHHHH
T ss_pred             cccchhhhcch--hhhhhhhhheeCCCCEEEEEecCCch-------hhhhhhhhhhhh----------hhHHHHHHHHHH
Confidence            56667667664  58999999999999999887643210       00011111 111          134567778889


Q ss_pred             CCCCceEE
Q 043063          288 AGFPHLRL  295 (301)
Q Consensus       288 aGf~~~~~  295 (301)
                      +||++..+
T Consensus       200 aGF~~~~i  207 (236)
T 3orh_A          200 AGFRRENI  207 (236)
T ss_dssp             HTCCGGGE
T ss_pred             cCCeEEEE
Confidence            99997654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.96  E-value=3.1e-09  Score=85.51  Aligned_cols=106  Identities=20%  Similarity=0.172  Sum_probs=82.9

Q ss_pred             CcceEEeecCCce------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCCc--ccEeeHhhhhccCChH-----
Q 043063          160 GVKRLVDVGGSAG------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDD-----  219 (301)
Q Consensus       160 ~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~-----  219 (301)
                      ...+|||||||+|            +++|. |.+++.   .++++++.+|+.++++.  .|+|+++..+|..++.     
T Consensus        23 ~~~~vLD~GcG~G~~~~~l~~~~~v~gvD~s~~~~~~---~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~   99 (170)
T 3q87_B           23 EMKIVLDLGTSTGVITEQLRKRNTVVSTDLNIRALES---HRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG   99 (170)
T ss_dssp             CSCEEEEETCTTCHHHHHHTTTSEEEEEESCHHHHHT---CSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred             CCCeEEEeccCccHHHHHHHhcCcEEEEECCHHHHhc---ccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence            3469999999996            46787 777776   57899999999887553  4999999888865554     


Q ss_pred             --HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          220 --ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       220 --~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                        +...+++++.+.+ |||++++.+...                              .+.+++.++++++||+...+..
T Consensus       100 ~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~gf~~~~~~~  148 (170)
T 3q87_B          100 GYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEERGYGTRILKV  148 (170)
T ss_dssp             CGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHCCCcEEEEEe
Confidence              4467899999999 999999877411                              0467788899999999888765


Q ss_pred             cc
Q 043063          298 VL  299 (301)
Q Consensus       298 ~~  299 (301)
                      ..
T Consensus       149 ~~  150 (170)
T 3q87_B          149 RK  150 (170)
T ss_dssp             EE
T ss_pred             ec
Confidence            43

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.94  E-value=4.7e-10  Score=97.79  Aligned_cols=127  Identities=17%  Similarity=0.181  Sum_probs=91.7

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~  208 (301)
                      .+++.++ .....+|||||||+|             +++|. +.+++.+++     ..+++++.+|+.+. .+. .|+|+
T Consensus       111 ~~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~  189 (286)
T 3m70_A          111 DVVDAAK-IISPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFIV  189 (286)
T ss_dssp             HHHHHHH-HSCSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEEE
T ss_pred             HHHHHhh-ccCCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEEE
Confidence            3444443 335789999999996             57787 777776653     12899999999875 333 59999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhC
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA  288 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~a  288 (301)
                      +..++|+++++....+|+++++.|+|||++++......++.. .+                .......+.+++.++++. 
T Consensus       190 ~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~----------------~~~~~~~~~~~l~~~~~~-  251 (286)
T 3m70_A          190 STVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVP-CP----------------LPFSFTFAENELKEYYKD-  251 (286)
T ss_dssp             ECSSGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSC-CS----------------SCCSCCBCTTHHHHHTTT-
T ss_pred             EccchhhCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCC-CC----------------CCccccCCHHHHHHHhcC-
Confidence            999999999988899999999999999998887765544311 10                001223477888888854 


Q ss_pred             CCCceEEE
Q 043063          289 GFPHLRLY  296 (301)
Q Consensus       289 Gf~~~~~~  296 (301)
                       |.++...
T Consensus       252 -~~~~~~~  258 (286)
T 3m70_A          252 -WEFLEYN  258 (286)
T ss_dssp             -SEEEEEE
T ss_pred             -CEEEEEE
Confidence             7776653

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.94  E-value=2.9e-09  Score=87.99  Aligned_cols=110  Identities=12%  Similarity=0.144  Sum_probs=81.2

Q ss_pred             hhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC---ccc
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP---AAD  205 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p---~~D  205 (301)
                      ++..++ ..+..+|||||||+|               +++|. |.+++.+++      .++++++.+|+.+..+   ..|
T Consensus        32 ~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D  110 (204)
T 3e05_A           32 TLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPD  110 (204)
T ss_dssp             HHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCS
T ss_pred             HHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCC
Confidence            344453 667789999999996               56787 777777654      2789999999976533   369


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++...++     ...++|+++.+.|+|||++++......                              +.+++.+++
T Consensus       111 ~i~~~~~~~-----~~~~~l~~~~~~LkpgG~l~~~~~~~~------------------------------~~~~~~~~l  155 (204)
T 3e05_A          111 RVFIGGSGG-----MLEEIIDAVDRRLKSEGVIVLNAVTLD------------------------------TLTKAVEFL  155 (204)
T ss_dssp             EEEESCCTT-----CHHHHHHHHHHHCCTTCEEEEEECBHH------------------------------HHHHHHHHH
T ss_pred             EEEECCCCc-----CHHHHHHHHHHhcCCCeEEEEEecccc------------------------------cHHHHHHHH
Confidence            999888775     345899999999999999998654211                              355677788


Q ss_pred             HhCCCCceEEEE
Q 043063          286 FSAGFPHLRLYR  297 (301)
Q Consensus       286 ~~aGf~~~~~~~  297 (301)
                      +++|| .+++..
T Consensus       156 ~~~g~-~~~~~~  166 (204)
T 3e05_A          156 EDHGY-MVEVAC  166 (204)
T ss_dssp             HHTTC-EEEEEE
T ss_pred             HHCCC-ceeEEE
Confidence            88888 544443

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.88  E-value=2e-09  Score=89.86  Aligned_cols=127  Identities=9%  Similarity=0.032  Sum_probs=78.2

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhh----CCC------CCceeEEeCCCCcc-CCc-ccEee-
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAE----APS------IPGVTHIGGDMFKS-IPA-ADAIF-  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~----a~~------~~ri~~~~gd~~~~-~p~-~D~v~-  208 (301)
                      ..+..+|||||||+|               +++|. +.+++.    +++      .++++++.+|+.+. ++. .|.|+ 
T Consensus        25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~  104 (218)
T 3mq2_A           25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV  104 (218)
T ss_dssp             TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred             ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence            446689999999996               56788 664543    222      35899999999764 432 14444 


Q ss_pred             --Hhhhhc--cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063          209 --MKWVLT--TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       209 --~~~vlh--~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~  284 (301)
                        ....+|  +++|.  ..+|++++++|+|||++++.-........ .+  ...   +..      .-......+++..+
T Consensus       105 ~~~~~~~~~~~~~~~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~-~~--~~~---~~~------~~~~~~~~~~l~~~  170 (218)
T 3mq2_A          105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRPGASFLVALNLHAWRPS-VP--EVG---EHP------EPTPDSADEWLAPR  170 (218)
T ss_dssp             ESCCHHHHHHHHTSS--SHHHHHHHHTEEEEEEEEEEEEGGGBTTB-CG--GGT---TCC------CCCHHHHHHHHHHH
T ss_pred             EccchhhhhhhhccH--HHHHHHHHHHcCCCcEEEEEecccccccc-cc--ccc---cCC------ccchHHHHHHHHHH
Confidence              333332  44544  48999999999999999984332211100 00  000   000      00111235568889


Q ss_pred             HHhCCCCceEEEEc
Q 043063          285 GFSAGFPHLRLYRV  298 (301)
Q Consensus       285 l~~aGf~~~~~~~~  298 (301)
                      ++++||++.++..+
T Consensus       171 l~~aGf~i~~~~~~  184 (218)
T 3mq2_A          171 YAEAGWKLADCRYL  184 (218)
T ss_dssp             HHHTTEEEEEEEEE
T ss_pred             HHHcCCCceeeecc
Confidence            99999999887754

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.87  E-value=8.8e-09  Score=86.90  Aligned_cols=116  Identities=16%  Similarity=0.230  Sum_probs=78.7

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhh----CCCCCceeEEeCCCCc----c-CCc-ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAE----APSIPGVTHIGGDMFK----S-IPA-ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~----a~~~~ri~~~~gd~~~----~-~p~-~D~v~~~~  211 (301)
                      +.+..+|||||||+|               +++|. |.+++.    ++..+++.++.+|+..    . ++. .|+|+   
T Consensus        72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~---  148 (230)
T 1fbn_A           72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDVIY---  148 (230)
T ss_dssp             CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEEEEE---
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEEEEE---
Confidence            566789999999996               35676 666644    3345789999999986    2 333 49988   


Q ss_pred             hhccCChH-HHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          212 VLTTWTDD-ECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       212 vlh~~~d~-~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                        |++++. ....+|+++++.|+|||++++. ..........+.         ...          ..+++. +|+++||
T Consensus       149 --~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~~~~---------~~~----------~~~~l~-~l~~~Gf  205 (230)
T 1fbn_A          149 --EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVTKDP---------KEI----------FKEQKE-ILEAGGF  205 (230)
T ss_dssp             --ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSSSCH---------HHH----------HHHHHH-HHHHHTE
T ss_pred             --EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCCCCH---------HHh----------hHHHHH-HHHHCCC
Confidence              666554 3457799999999999999986 211111000000         011          246777 8999999


Q ss_pred             CceEEEEcc
Q 043063          291 PHLRLYRVL  299 (301)
Q Consensus       291 ~~~~~~~~~  299 (301)
                      +.+++.++.
T Consensus       206 ~~~~~~~~~  214 (230)
T 1fbn_A          206 KIVDEVDIE  214 (230)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEccC
Confidence            999888753

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.86  E-value=9.5e-10  Score=93.19  Aligned_cols=86  Identities=19%  Similarity=0.321  Sum_probs=65.2

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc---CCc--ccEeeH-hhh
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS---IPA--ADAIFM-KWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~p~--~D~v~~-~~v  212 (301)
                      ....+|||||||+|              +++|. +.+++.+++     ..+++++.+|+.+.   ++.  .|+|++ .+.
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~  138 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP  138 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence            35679999999996              56787 778777654     26899999998653   443  499988 444


Q ss_pred             --hccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          213 --LTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       213 --lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                        .+++.......+|+++++.|+|||++++++..
T Consensus       139 ~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~  172 (236)
T 1zx0_A          139 LSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT  172 (236)
T ss_dssp             CBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred             cchhhhhhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence              44455555568899999999999999988764

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.84  E-value=1.6e-09  Score=93.21  Aligned_cols=93  Identities=13%  Similarity=0.105  Sum_probs=67.3

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---CceeEEeCCCCc----cCC-cccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---PGVTHIGGDMFK----SIP-AADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~ri~~~~gd~~~----~~p-~~D~  206 (301)
                      ..++..++ ..+..+|||||||+|             +++|. +.+++.+++.   ..+.....++..    ..+ ..|+
T Consensus        35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~fD~  113 (261)
T 3iv6_A           35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHFDF  113 (261)
T ss_dssp             HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCCSE
T ss_pred             HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCccE
Confidence            44555554 667789999999996             57897 7788776542   122222222221    122 2599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      |++..++|++++++...+|++++++| |||++++.-.
T Consensus       114 Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~  149 (261)
T 3iv6_A          114 VLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK  149 (261)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred             EEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence            99999999999988899999999999 9999988744

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=98.83  E-value=3.4e-09  Score=89.45  Aligned_cols=120  Identities=13%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             cCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhC----CCCCceeEEeCCCCcc--CC---c-ccE
Q 043063          154 GYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEA----PSIPGVTHIGGDMFKS--IP---A-ADA  206 (301)
Q Consensus       154 ~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a----~~~~ri~~~~gd~~~~--~p---~-~D~  206 (301)
                      .++ +++..+|||+|||+|                +.+|. |.+++.+    ++..++..+.+|...+  .+   . .|+
T Consensus        72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv  150 (233)
T 4df3_A           72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG  150 (233)
T ss_dssp             CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred             hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence            343 788899999999995                35687 6666553    4467899999988764  22   1 488


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |++.  +++ ++ +...+++++++.|||||+++|.......+.. .+                   .. ...++-.+.|+
T Consensus       151 Vf~d--~~~-~~-~~~~~l~~~~r~LKpGG~lvI~ik~r~~d~~-~p-------------------~~-~~~~~ev~~L~  205 (233)
T 4df3_A          151 LYAD--VAQ-PE-QAAIVVRNARFFLRDGGYMLMAIKARSIDVT-TE-------------------PS-EVYKREIKTLM  205 (233)
T ss_dssp             EEEC--CCC-TT-HHHHHHHHHHHHEEEEEEEEEEEECCHHHHH-TC-------------------CC-HHHHHHHHHHH
T ss_pred             EEEe--ccC-Ch-hHHHHHHHHHHhccCCCEEEEEEecccCCCC-CC-------------------hH-HHHHHHHHHHH
Confidence            7643  322 22 3458899999999999999987542221100 00                   00 01223345678


Q ss_pred             hCCCCceEEEEcc
Q 043063          287 SAGFPHLRLYRVL  299 (301)
Q Consensus       287 ~aGf~~~~~~~~~  299 (301)
                      ++||+..+...+.
T Consensus       206 ~~GF~l~e~i~L~  218 (233)
T 4df3_A          206 DGGLEIKDVVHLD  218 (233)
T ss_dssp             HTTCCEEEEEECT
T ss_pred             HCCCEEEEEEccC
Confidence            9999999988763

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.82  E-value=4e-09  Score=89.92  Aligned_cols=92  Identities=20%  Similarity=0.348  Sum_probs=70.0

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~  208 (301)
                      .+++... ..+..+|||||||+|             +++|. |.+++.+++     ..+++++.+|+.+. .+. .|+|+
T Consensus        32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~  110 (252)
T 1wzn_A           32 EIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVT  110 (252)
T ss_dssp             HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEEE
T ss_pred             HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccEEE
Confidence            3444442 345679999999996             57788 777777653     24799999999864 444 59998


Q ss_pred             Hh-hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          209 MK-WVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       209 ~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +. ..+|++++++..++|+++++.|+|||++++.-
T Consensus       111 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~  145 (252)
T 1wzn_A          111 MFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (252)
T ss_dssp             ECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence            76 45677787788999999999999999988643

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.82  E-value=2.1e-09  Score=93.17  Aligned_cols=55  Identities=18%  Similarity=0.216  Sum_probs=48.6

Q ss_pred             ceeEEeCCCCcc-CC--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          189 GVTHIGGDMFKS-IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       189 ri~~~~gd~~~~-~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +|+|..+|+.++ +|  . .|+|+|.++|++++++...+++++++++|+|||.|++-..
T Consensus       195 ~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg~s  253 (274)
T 1af7_A          195 YVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  253 (274)
T ss_dssp             TEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             cCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            699999999985 55  2 4999999999999998889999999999999999988543

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.82  E-value=1.8e-09  Score=95.12  Aligned_cols=139  Identities=10%  Similarity=0.074  Sum_probs=87.6

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCCC-----C-------ceeEEeCCCCc---------cCCc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-----P-------GVTHIGGDMFK---------SIPA  203 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-----~-------ri~~~~gd~~~---------~~p~  203 (301)
                      ...+|||||||+|              +++|+ +.+++.|++.     .       +++|...|+..         +++.
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            3579999999995              57898 8888887642     1       26787877722         1233


Q ss_pred             --ccEeeHhhhhcc-CChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC---C--------ChH-Hhhhhhh----ccH-
Q 043063          204 --ADAIFMKWVLTT-WTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS---N--------ESQ-RTRALLE----GDI-  263 (301)
Q Consensus       204 --~D~v~~~~vlh~-~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~---~--------~~~-~~~~~~~----~d~-  263 (301)
                        .|+|++..++|+ +++++..++|++++++|+|||++++..+-.+.-.   .        ..+ ...+...    .+. 
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  207 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI  207 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred             CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence              499999999997 4555567999999999999999988765211000   0        000 0000000    000 


Q ss_pred             -HH---HhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          264 -FV---MTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       264 -~m---~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                       .+   .+.....-...+.+++.++++++||+.+.....
T Consensus       208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f  246 (302)
T 2vdw_A          208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDF  246 (302)
T ss_dssp             EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEH
T ss_pred             ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecCh
Confidence             00   000000012467899999999999999988654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.80  E-value=2.7e-09  Score=88.45  Aligned_cols=87  Identities=18%  Similarity=0.298  Sum_probs=68.7

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEeeHhhhhccC
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTW  216 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~  216 (301)
                      ....+|||||||+|              +++|. |.+++.+++    .+++++..+|+.+. ++.  .|+|++..++|++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~~  120 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDAL  120 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhhh
Confidence            45679999999995              46787 677766543    36899999999774 543  4999998888765


Q ss_pred             C-------------hHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          217 T-------------DDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       217 ~-------------d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      .             .++..++|+++++.|+|||++++.+...
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~  162 (215)
T 2pxx_A          121 LAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAA  162 (215)
T ss_dssp             TTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             ccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeCCC
Confidence            5             3456799999999999999999988743

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.80  E-value=8.7e-09  Score=100.18  Aligned_cols=84  Identities=23%  Similarity=0.277  Sum_probs=69.0

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC------------CCceeEEeCCCCcc-CCc--ccEe
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------------IPGVTHIGGDMFKS-IPA--ADAI  207 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------------~~ri~~~~gd~~~~-~p~--~D~v  207 (301)
                      +..+|||||||+|                +++|+ +.+++.|++            ..+|+|+.+|+.+. .+.  .|+|
T Consensus       721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDlV  800 (950)
T 3htx_A          721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDIG  800 (950)
T ss_dssp             CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCEE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeEE
Confidence            5679999999995                46787 777776643            25899999999864 432  5999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      ++..++|+++++....+++++++.|+|| .++|..+-
T Consensus       801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN  836 (950)
T 3htx_A          801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN  836 (950)
T ss_dssp             EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred             EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence            9999999999988889999999999999 77776653

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.78  E-value=2.2e-09  Score=88.75  Aligned_cols=104  Identities=14%  Similarity=0.116  Sum_probs=79.8

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW  216 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~  216 (301)
                      .+..+|||||||+|              +++|. +.+++.+++      ..+++++.+|+.+..+. .|+|++...+|+ 
T Consensus        59 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~-  137 (205)
T 3grz_A           59 VKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI-  137 (205)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH-
T ss_pred             cCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH-
Confidence            35679999999995              56787 777776654      23499999999876544 599999877764 


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                          ...+++++++.|+|||++++.+....                              +.+++.++++++||+.+++.
T Consensus       138 ----~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~~~~~  183 (205)
T 3grz_A          138 ----LLDLIPQLDSHLNEDGQVIFSGIDYL------------------------------QLPKIEQALAENSFQIDLKM  183 (205)
T ss_dssp             ----HHHHGGGSGGGEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred             ----HHHHHHHHHHhcCCCCEEEEEecCcc------------------------------cHHHHHHHHHHcCCceEEee
Confidence                36889999999999999998654221                              35677888899999888776


Q ss_pred             E
Q 043063          297 R  297 (301)
Q Consensus       297 ~  297 (301)
                      .
T Consensus       184 ~  184 (205)
T 3grz_A          184 R  184 (205)
T ss_dssp             E
T ss_pred             c
Confidence            5

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.76  E-value=8.1e-09  Score=87.00  Aligned_cols=129  Identities=12%  Similarity=0.093  Sum_probs=74.6

Q ss_pred             CCcceEEeecCCce---------------eeeeh--hHHHhhC---CC------CCceeEEeCCCCccCCc--ccEeeHh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL--PEVVAEA---PS------IPGVTHIGGDMFKSIPA--ADAIFMK  210 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl--p~v~~~a---~~------~~ri~~~~gd~~~~~p~--~D~v~~~  210 (301)
                      ....+|||||||+|               +++|+  +.+++.|   ++      ..+++|..+|+... |.  .|+|.+.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i  101 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSI  101 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEE
Confidence            35679999999995               57887  3454443   43      25799999998653 43  2554444


Q ss_pred             hhhccCChHH------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063          211 WVLTTWTDDE------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       211 ~vlh~~~d~~------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~  284 (301)
                      .+.+.|+...      ...+|++++++|+|||++++...+.+.. ...+.  .  ..+....     .......+++.++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~-~~~~~--~--~~~~~~~-----~~~~~~~~el~~~  171 (225)
T 3p2e_A          102 SILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY-EEAEI--K--KRGLPLL-----SKAYFLSEQYKAE  171 (225)
T ss_dssp             EEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC-------------------C-----CHHHHHSHHHHHH
T ss_pred             EEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc-hhchh--h--hcCCCCC-----ChhhcchHHHHHH
Confidence            4433333311      1368999999999999999854433321 10000  0  0010000     0000122369999


Q ss_pred             HHhCCCCceEEEEc
Q 043063          285 GFSAGFPHLRLYRV  298 (301)
Q Consensus       285 l~~aGf~~~~~~~~  298 (301)
                      ++++||++..+.-+
T Consensus       172 l~~aGf~v~~~~~~  185 (225)
T 3p2e_A          172 LSNSGFRIDDVKEL  185 (225)
T ss_dssp             HHHHTCEEEEEEEE
T ss_pred             HHHcCCCeeeeeec
Confidence            99999998877643

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=98.74  E-value=2.7e-09  Score=92.61  Aligned_cols=86  Identities=16%  Similarity=0.162  Sum_probs=63.4

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--  203 (301)
                      .++..++ +.+..+|||+|||+|                +++|. |.+++.+++       .++++++.+|+.+.++.  
T Consensus       101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  179 (275)
T 1yb2_A          101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  179 (275)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence            4555554 667789999999995                45687 777665542       25899999999876554  


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .|+|++     ++++.  .++|+++.+.|+|||++++...
T Consensus       180 fD~Vi~-----~~~~~--~~~l~~~~~~LkpgG~l~i~~~  212 (275)
T 1yb2_A          180 YDAVIA-----DIPDP--WNHVQKIASMMKPGSVATFYLP  212 (275)
T ss_dssp             EEEEEE-----CCSCG--GGSHHHHHHTEEEEEEEEEEES
T ss_pred             ccEEEE-----cCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence            599987     45554  3899999999999999998874

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.73  E-value=9.7e-09  Score=90.70  Aligned_cols=138  Identities=15%  Similarity=0.161  Sum_probs=89.4

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------------CCceeEEeCCCCcc-----C--C--
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------------IPGVTHIGGDMFKS-----I--P--  202 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------------~~ri~~~~gd~~~~-----~--p--  202 (301)
                      ...+|||||||+|              +++|+ +.+++.+++             ..+++++.+|+.+.     +  +  
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~  113 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM  113 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred             CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence            5679999999995              56787 777766543             23799999999764     2  2  


Q ss_pred             cccEeeHhhhhccC--ChHHHHHHHHHHHHhCCCCCEEEEeccccCC-------CCCChHHhh-----hhhhccH-----
Q 043063          203 AADAIFMKWVLTTW--TDDECKLIMENCYKAIPAGGKLIACEPVLPD-------DSNESQRTR-----ALLEGDI-----  263 (301)
Q Consensus       203 ~~D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~-------~~~~~~~~~-----~~~~~d~-----  263 (301)
                      ..|+|++..++|+.  +.++...+|++++++|+|||++++..+..++       .........     +...-++     
T Consensus       114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  193 (313)
T 3bgv_A          114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGC  193 (313)
T ss_dssp             CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCC
T ss_pred             CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccc
Confidence            24999999999987  3456779999999999999999987653210       000000000     0000000     


Q ss_pred             ----HH-HhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          264 ----FV-MTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       264 ----~m-~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                          .+ .+ ........+.+++.+++++.||+.+...+.
T Consensus       194 ~~~f~l~~~-~~~~~~~~~~~~~~~l~~~~G~~~v~~~~f  232 (313)
T 3bgv_A          194 KYDFNLEGV-VDVPEFLVYFPLLNEMAKKYNMKLVYKKTF  232 (313)
T ss_dssp             EEEEEEC----CCEEECCCHHHHHHHGGGGTEEEEEEEEH
T ss_pred             eEEEEECCc-ccCcceEEcHHHHHHHHHHcCcEEEEecCH
Confidence                00 00 000123358899999999999999987653

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=98.71  E-value=3.2e-08  Score=85.83  Aligned_cols=107  Identities=21%  Similarity=0.271  Sum_probs=79.7

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHh-----
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMK-----  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~-----  210 (301)
                      +..+|||||||+|               +.+|. +.+++.+++      .++++++.+|+++..+.  .|+|++.     
T Consensus       109 ~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~~  188 (276)
T 2b3t_A          109 QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYID  188 (276)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCBC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCCC
Confidence            4579999999996               46687 777766653      25899999999887543  5999987     


Q ss_pred             --------hhhccCCh----------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcc
Q 043063          211 --------WVLTTWTD----------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAK  272 (301)
Q Consensus       211 --------~vlh~~~d----------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~  272 (301)
                              .++++.|.          +...++++++.+.|+|||++++...      .                      
T Consensus       189 ~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~------~----------------------  240 (276)
T 2b3t_A          189 EQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG------W----------------------  240 (276)
T ss_dssp             TTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC------S----------------------
T ss_pred             ccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC------c----------------------
Confidence                    34444442          3457899999999999999887521      0                      


Q ss_pred             ccccCHHHHHHHHHhCCCCceEEEE
Q 043063          273 GKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       273 g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                         .+.+++.++++++||+.+++.+
T Consensus       241 ---~~~~~~~~~l~~~Gf~~v~~~~  262 (276)
T 2b3t_A          241 ---QQGEAVRQAFILAGYHDVETCR  262 (276)
T ss_dssp             ---SCHHHHHHHHHHTTCTTCCEEE
T ss_pred             ---hHHHHHHHHHHHCCCcEEEEEe
Confidence               1467788899999999887765

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=98.71  E-value=4.1e-09  Score=90.13  Aligned_cols=112  Identities=18%  Similarity=0.229  Sum_probs=82.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-  203 (301)
                      ..++..++ ..+..+|||+|||+|                +.+|. |.+++.+++       .+++++..+|+.+.++. 
T Consensus        83 ~~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (255)
T 3mb5_A           83 ALIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEE  161 (255)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCC
T ss_pred             HHHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCC
Confidence            34555554 667889999999995                46787 777777654       35699999999877665 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                       .|+|++     +.++.  ..+|+++.++|+|||++++..+..+                              ...++.
T Consensus       162 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~  204 (255)
T 3mb5_A          162 NVDHVIL-----DLPQP--ERVVEHAAKALKPGGFFVAYTPCSN------------------------------QVMRLH  204 (255)
T ss_dssp             SEEEEEE-----CSSCG--GGGHHHHHHHEEEEEEEEEEESSHH------------------------------HHHHHH
T ss_pred             CcCEEEE-----CCCCH--HHHHHHHHHHcCCCCEEEEEECCHH------------------------------HHHHHH
Confidence             599886     45554  4789999999999999998754211                              234566


Q ss_pred             HHHHhCC--CCceEEEEc
Q 043063          283 QLGFSAG--FPHLRLYRV  298 (301)
Q Consensus       283 ~~l~~aG--f~~~~~~~~  298 (301)
                      +++++.|  |..+++..+
T Consensus       205 ~~l~~~g~~f~~~~~~e~  222 (255)
T 3mb5_A          205 EKLREFKDYFMKPRTINV  222 (255)
T ss_dssp             HHHHHTGGGBSCCEEECC
T ss_pred             HHHHHcCCCccccEEEEE
Confidence            7778888  877776543

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=98.70  E-value=2.9e-09  Score=88.16  Aligned_cols=85  Identities=18%  Similarity=0.106  Sum_probs=49.1

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCccCC------c-ccEeeHh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKSIP------A-ADAIFMK  210 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~~p------~-~D~v~~~  210 (301)
                      .+..+|||+|||+|               +++|. |.+++.+++.     .+++++.+|+.++++      . .|+|++.
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHTTCCBSEEEEC
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhccCcccEEEEC
Confidence            56789999999996               56788 7888877652     178999999887643      2 5999984


Q ss_pred             ------hhhccCChHHH------------------HHHHHHHHHhCCCCCEEEEecc
Q 043063          211 ------WVLTTWTDDEC------------------KLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       211 ------~vlh~~~d~~~------------------~~iL~~~~~aL~pgg~lli~e~  243 (301)
                            ..+++++++..                  ..+++++++.|+|||++++++.
T Consensus       109 pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  165 (215)
T 4dzr_A          109 PPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV  165 (215)
T ss_dssp             CCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred             CCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence                  33444433322                  6889999999999999666654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.69  E-value=3.5e-09  Score=89.09  Aligned_cols=100  Identities=12%  Similarity=0.141  Sum_probs=73.4

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc--CC-c--ccEeeHhhhhccCCh
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS--IP-A--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~--~p-~--~D~v~~~~vlh~~~d  218 (301)
                      ....+|||||||+|             +++|. |.+++.+++ .++++++.+|+.+.  ++ .  .|+|++.      .+
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~------~~  120 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSR------RG  120 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEE------SC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeC------CC
Confidence            35679999999996             56798 778877764 47899999999764  33 3  4999886      22


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                        ...+|+++++.|+|||+++..                               +...+..++.++++++||....+..
T Consensus       121 --~~~~l~~~~~~LkpgG~l~~~-------------------------------~~~~~~~~~~~~l~~~Gf~~~~~~~  166 (226)
T 3m33_A          121 --PTSVILRLPELAAPDAHFLYV-------------------------------GPRLNVPEVPERLAAVGWDIVAEDH  166 (226)
T ss_dssp             --CSGGGGGHHHHEEEEEEEEEE-------------------------------ESSSCCTHHHHHHHHTTCEEEEEEE
T ss_pred             --HHHHHHHHHHHcCCCcEEEEe-------------------------------CCcCCHHHHHHHHHHCCCeEEEEEe
Confidence              348899999999999999810                               0111455677888888888776654

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.69  E-value=1.4e-08  Score=81.66  Aligned_cols=80  Identities=25%  Similarity=0.418  Sum_probs=62.3

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------C-CceeEEeCCCCccCCc----ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------I-PGVTHIGGDMFKSIPA----ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~-~ri~~~~gd~~~~~p~----~D~v~~~  210 (301)
                      ..+..+|||||||+|               +++|. |.+++.+++      . +++ ++.+|..+.+|.    .|+|++.
T Consensus        23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~  101 (178)
T 3hm2_A           23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG  101 (178)
T ss_dssp             CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence            556789999999995               56787 667776653      2 378 888998766442    5999999


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      ..+|+      ..+++++++.|+|||++++.+..
T Consensus       102 ~~~~~------~~~l~~~~~~L~~gG~l~~~~~~  129 (178)
T 3hm2_A          102 GGLTA------PGVFAAAWKRLPVGGRLVANAVT  129 (178)
T ss_dssp             C-TTC------TTHHHHHHHTCCTTCEEEEEECS
T ss_pred             CcccH------HHHHHHHHHhcCCCCEEEEEeec
Confidence            99976      47899999999999999987753

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.69  E-value=2.7e-08  Score=82.43  Aligned_cols=79  Identities=15%  Similarity=0.322  Sum_probs=61.1

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CC-ceeEEeCCCCccC---CcccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IP-GVTHIGGDMFKSI---PAADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~-ri~~~~gd~~~~~---p~~D~v~~~~vl  213 (301)
                      .....+|||||||+|             +++|. |.+++.+++      .+ +++++.+|+.+.+   +..|+|++...+
T Consensus        53 ~~~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           53 PRRGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            556789999999996             56798 777777654      23 8999999998743   346999976633


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                          +  .. +++++.+.|+|||++++...
T Consensus       133 ----~--~~-~l~~~~~~LkpgG~lv~~~~  155 (204)
T 3njr_A          133 ----S--QA-LYDRLWEWLAPGTRIVANAV  155 (204)
T ss_dssp             ----C--HH-HHHHHHHHSCTTCEEEEEEC
T ss_pred             ----c--HH-HHHHHHHhcCCCcEEEEEec
Confidence                2  23 99999999999999988654

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.69  E-value=1.9e-08  Score=81.75  Aligned_cols=92  Identities=11%  Similarity=0.221  Sum_probs=70.3

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CC--ceeEEeCCCCccCCc--ccE
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IP--GVTHIGGDMFKSIPA--ADA  206 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~--ri~~~~gd~~~~~p~--~D~  206 (301)
                      +++.+. ..+..+|||||||+|             +++|. |.+++.+++      ..  |++++.+|+.+..+.  .|+
T Consensus        44 l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  122 (194)
T 1dus_A           44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNK  122 (194)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEE
T ss_pred             HHHHcc-cCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCCceE
Confidence            444443 556789999999996             46787 777766553      13  599999999876543  599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      |++...+|+ ..+....+++++++.|+|||++++....
T Consensus       123 v~~~~~~~~-~~~~~~~~l~~~~~~L~~gG~l~~~~~~  159 (194)
T 1dus_A          123 IITNPPIRA-GKEVLHRIIEEGKELLKDNGEIWVVIQT  159 (194)
T ss_dssp             EEECCCSTT-CHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred             EEECCCccc-chhHHHHHHHHHHHHcCCCCEEEEEECC
Confidence            999888764 4455679999999999999999998763

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.64  E-value=4.7e-08  Score=85.14  Aligned_cols=80  Identities=19%  Similarity=0.286  Sum_probs=64.2

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~vl  213 (301)
                      ..+..+|||||||+|               +++|. |++++.|++      .++|+|+.+|+.+ +|.  .|+|++... 
T Consensus       120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~-  197 (298)
T 3fpf_A          120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL-  197 (298)
T ss_dssp             CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT-
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC-
Confidence            667899999999973               56798 888888764      2799999999875 343  599987654 


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        .++.  .++++++++.|+|||+|++.+.
T Consensus       198 --~~d~--~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          198 --AEPK--RRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             --CSCH--HHHHHHHHHHCCTTCEEEEEEC
T ss_pred             --ccCH--HHHHHHHHHHcCCCcEEEEEcC
Confidence              3443  5999999999999999999874

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=98.64  E-value=2.6e-08  Score=80.76  Aligned_cols=88  Identities=15%  Similarity=0.117  Sum_probs=61.7

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc--CC-c-ccEeeHh-hh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS--IP-A-ADAIFMK-WV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~--~p-~-~D~v~~~-~v  212 (301)
                      ..+..+|||||||+|             +.+|. |.+++.+++      .++++++.+|+...  .+ . .|+|++. ..
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~   99 (185)
T 3mti_A           20 LDDESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNLGY   99 (185)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence            456789999999996             57897 888877764      27899999776541  22 3 5999876 33


Q ss_pred             hccC------ChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          213 LTTW------TDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       213 lh~~------~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      ++..      ..+....+|+++++.|+|||++++.....
T Consensus       100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~  138 (185)
T 3mti_A          100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYYG  138 (185)
T ss_dssp             ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC--
T ss_pred             CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeCC
Confidence            3220      22456788999999999999999887643

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.62  E-value=1.1e-09  Score=93.85  Aligned_cols=131  Identities=11%  Similarity=0.061  Sum_probs=81.2

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCc----cCC----c-ccEe
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFK----SIP----A-ADAI  207 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~----~~p----~-~D~v  207 (301)
                      ...+|||||||+|               +++|. |.+++.|++       .++++++.+|+.+    +++    . .|+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            4579999999995               46787 777776653       2579999999543    444    2 5999


Q ss_pred             eHhhhhccCCh-------------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccc
Q 043063          208 FMKWVLTTWTD-------------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGK  274 (301)
Q Consensus       208 ~~~~vlh~~~d-------------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~  274 (301)
                      ++.-.+|...+             +....++++++++|+|||.+.+++.+....      ........  +..  ...+.
T Consensus       145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~~~~~------~~~l~~~g--~~~--~~~~~  214 (254)
T 2h00_A          145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRIIHDS------LQLKKRLR--WYS--CMLGK  214 (254)
T ss_dssp             EECCCCC-------------------------CTTTTHHHHTHHHHHHHHHHHH------HHHGGGBS--CEE--EEESS
T ss_pred             EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHHHHHH------HhcccceE--EEE--ECCCC
Confidence            99855554331             112356788999999999988887654321      01110011  010  11244


Q ss_pred             ccCHHHHHHHHHhCCCCceEEEEccC
Q 043063          275 HMTEQEFKQLGFSAGFPHLRLYRVLD  300 (301)
Q Consensus       275 ~rt~~e~~~~l~~aGf~~~~~~~~~~  300 (301)
                      ..+.+++.++++++||+.+++.++..
T Consensus       215 ~~~~~~~~~~l~~~Gf~~v~~~~~~~  240 (254)
T 2h00_A          215 KCSLAPLKEELRIQGVPKVTYTEFCQ  240 (254)
T ss_dssp             TTSHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred             hhHHHHHHHHHHHcCCCceEEEEEec
Confidence            45668999999999999998887653

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.62  E-value=1.3e-08  Score=82.64  Aligned_cols=81  Identities=21%  Similarity=0.215  Sum_probs=63.3

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC---cccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP---AADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p---~~D~v~~~~vl  213 (301)
                      ..+..+|||+|||+|             +++|. +.+++.+++       .+++++..+|+.+.++   ..|+|++..++
T Consensus        31 ~~~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~  110 (192)
T 1l3i_A           31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (192)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCCCEEEECCch
Confidence            556689999999996             46787 777766553       2689999999876443   35999998776


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      |+     ...+|+++++.|+|||++++...
T Consensus       111 ~~-----~~~~l~~~~~~l~~gG~l~~~~~  135 (192)
T 1l3i_A          111 GE-----LQEILRIIKDKLKPGGRIIVTAI  135 (192)
T ss_dssp             TC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             HH-----HHHHHHHHHHhcCCCcEEEEEec
Confidence            53     36899999999999999988654

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=98.60  E-value=1.2e-08  Score=87.62  Aligned_cols=83  Identities=17%  Similarity=0.229  Sum_probs=62.5

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHH
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECK  222 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~  222 (301)
                      +..+|||||||+|             +++|. +.+++.+++...-.++.+|+.+. ++.  .|+|++..+++++.++ ..
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~-~~  132 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN-KD  132 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-HH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-HH
Confidence            5679999999996             56787 77777765422123888888764 443  4999998866665332 57


Q ss_pred             HHHHHHHHhCCCCCEEEEecc
Q 043063          223 LIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       223 ~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .+|+++++.|+|||++++...
T Consensus       133 ~~l~~~~~~LkpgG~l~~~~~  153 (260)
T 2avn_A          133 KAFSEIRRVLVPDGLLIATVD  153 (260)
T ss_dssp             HHHHHHHHHEEEEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCeEEEEEeC
Confidence            999999999999999998765

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.59  E-value=2.1e-08  Score=88.28  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=77.7

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc--ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA--ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~--~D~v  207 (301)
                      .+..+|||||||+|               +++|+ |.+++.+++          .+|++++.+|+.+..   +.  .|+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            35679999999996               46787 777766543          368999999987641   33  4999


Q ss_pred             eHhhhhccCChHHH--HHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          208 FMKWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       208 ~~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      ++....+.+++...  ..++++++++|+|||++++.....              +.+            ..+..++.+.+
T Consensus       174 i~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~--------------~~~------------~~~~~~~~~~l  227 (304)
T 3bwc_A          174 IIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI--------------WLD------------LELIEKMSRFI  227 (304)
T ss_dssp             EEECC---------CCHHHHHHHHHHEEEEEEEEEEECCT--------------TTC------------HHHHHHHHHHH
T ss_pred             EECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc--------------ccc------------hHHHHHHHHHH
Confidence            99776665554332  589999999999999998873210              000            01467788899


Q ss_pred             HhCCCCceEEEEc
Q 043063          286 FSAGFPHLRLYRV  298 (301)
Q Consensus       286 ~~aGf~~~~~~~~  298 (301)
                      +++||..+++...
T Consensus       228 ~~~GF~~v~~~~~  240 (304)
T 3bwc_A          228 RETGFASVQYALM  240 (304)
T ss_dssp             HHHTCSEEEEEEC
T ss_pred             HhCCCCcEEEEEe
Confidence            9999998877643

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.59  E-value=9.6e-08  Score=87.71  Aligned_cols=96  Identities=15%  Similarity=0.276  Sum_probs=68.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhC-------CC--------CCceeEEeCCC
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEA-------PS--------IPGVTHIGGDM  197 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a-------~~--------~~ri~~~~gd~  197 (301)
                      ..++..++ .....+|||||||+|               +++|+ +..++.|       ++        ..+|+++.+|.
T Consensus       232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~  310 (433)
T 1u2z_A          232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS  310 (433)
T ss_dssp             HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence            34555554 667789999999996               46687 5555544       32        26899998755


Q ss_pred             Cc-c--C----CcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063          198 FK-S--I----PAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD  248 (301)
Q Consensus       198 ~~-~--~----p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~  248 (301)
                      +. .  +    ...|+|++..+++  . ++....|+++.+.|+|||+|++.+...+.+
T Consensus       311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKpGG~lVi~d~f~p~~  365 (433)
T 1u2z_A          311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKVGCKIISLKSLRSLT  365 (433)
T ss_dssp             STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCTTCEEEESSCSSCTT
T ss_pred             cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCCCeEEEEeeccCCcc
Confidence            43 2  2    2259999877763  2 345678999999999999999999877654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.57  E-value=3.4e-08  Score=84.70  Aligned_cols=105  Identities=16%  Similarity=0.250  Sum_probs=77.9

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCCC---C--ceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI---P--GVTHIGGDMFKSIPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~---~--ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~  217 (301)
                      .+..+|||+|||+|             +++|. |..++.+++.   .  .+++..+|+.+.++.  .|+|++....|   
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~---  195 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE---  195 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH---
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH---
Confidence            35679999999996             46787 7776665531   1  189999998765543  59999865443   


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                        ....+++++++.|+|||++++.+...+                              +.+++.++++++||+++++..
T Consensus       196 --~~~~~l~~~~~~LkpgG~lils~~~~~------------------------------~~~~v~~~l~~~Gf~~~~~~~  243 (254)
T 2nxc_A          196 --LHAALAPRYREALVPGGRALLTGILKD------------------------------RAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             --HHHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTCEEEEEEE
T ss_pred             --HHHHHHHHHHHHcCCCCEEEEEeeccC------------------------------CHHHHHHHHHHCCCEEEEEec
Confidence              356899999999999999998654211                              367788999999999988765


Q ss_pred             c
Q 043063          298 V  298 (301)
Q Consensus       298 ~  298 (301)
                      .
T Consensus       244 ~  244 (254)
T 2nxc_A          244 E  244 (254)
T ss_dssp             E
T ss_pred             c
Confidence            3

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.56  E-value=4.9e-08  Score=83.34  Aligned_cols=86  Identities=17%  Similarity=0.300  Sum_probs=66.6

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-  203 (301)
                      .++..++ +.+..+|||+|||+|                +.+|. |.+++.+++       .+++++..+|+.+. ++. 
T Consensus        87 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~  165 (258)
T 2pwy_A           87 AMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEA  165 (258)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTT
T ss_pred             HHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCC
Confidence            4556664 777889999999995                45686 777666543       36899999999876 664 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                       .|+|++     ++++.  ..+|+++.++|+|||++++..+
T Consensus       166 ~~D~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          166 AYDGVAL-----DLMEP--WKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             CEEEEEE-----ESSCG--GGGHHHHHHHEEEEEEEEEEES
T ss_pred             CcCEEEE-----CCcCH--HHHHHHHHHhCCCCCEEEEEeC
Confidence             599987     45554  3889999999999999999775

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.56  E-value=6.6e-08  Score=84.19  Aligned_cols=134  Identities=13%  Similarity=0.134  Sum_probs=81.2

Q ss_pred             HhhhcCCCCC-CcceEEeecCCce--------------eeeeh-hHHHhh-CCCCCceeEEe-CCCCc----cCCc--cc
Q 043063          150 SILDGYDGFK-GVKRLVDVGGSAG--------------INFDL-PEVVAE-APSIPGVTHIG-GDMFK----SIPA--AD  205 (301)
Q Consensus       150 ~~~~~~~~~~-~~~~vlDvGgG~g--------------~~~Dl-p~v~~~-a~~~~ri~~~~-gd~~~----~~p~--~D  205 (301)
                      .++..+. .. ...++||||||+|              +.+|+ +.+++. .+...|+..+. .|+..    .+|.  .|
T Consensus        75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~fD  153 (291)
T 3hp7_A           75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLPS  153 (291)
T ss_dssp             HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred             HHHHhcC-CCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCCC
Confidence            3444453 33 3569999999996              45787 666655 33346665543 34321    1443  48


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe-ccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC-EPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQL  284 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~-e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~  284 (301)
                      ++++...+|++     ..+|+.+++.|+|||+++++ .+-.+..+  .......-..|..        -..+..+++.++
T Consensus       154 ~v~~d~sf~sl-----~~vL~e~~rvLkpGG~lv~lvkPqfe~~~--~~~~~~G~vrd~~--------~~~~~~~~v~~~  218 (291)
T 3hp7_A          154 FASIDVSFISL-----NLILPALAKILVDGGQVVALVKPQFEAGR--EQIGKNGIVRESS--------IHEKVLETVTAF  218 (291)
T ss_dssp             EEEECCSSSCG-----GGTHHHHHHHSCTTCEEEEEECGGGTSCG--GGCC-CCCCCCHH--------HHHHHHHHHHHH
T ss_pred             EEEEEeeHhhH-----HHHHHHHHHHcCcCCEEEEEECcccccCh--hhcCCCCccCCHH--------HHHHHHHHHHHH
Confidence            88887777654     47999999999999999886 11111110  0000000111111        112368899999


Q ss_pred             HHhCCCCceEEEEcc
Q 043063          285 GFSAGFPHLRLYRVL  299 (301)
Q Consensus       285 l~~aGf~~~~~~~~~  299 (301)
                      ++++||.+..+...+
T Consensus       219 ~~~~Gf~v~~~~~sp  233 (291)
T 3hp7_A          219 AVDYGFSVKGLDFSP  233 (291)
T ss_dssp             HHHTTEEEEEEEECS
T ss_pred             HHHCCCEEEEEEECC
Confidence            999999988877654

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.55  E-value=2.3e-07  Score=77.72  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=75.0

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHh----hCCCCCceeEEeCCCCcc-----CCc-ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVA----EAPSIPGVTHIGGDMFKS-----IPA-ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~----~a~~~~ri~~~~gd~~~~-----~p~-~D~v~~~  210 (301)
                      +.+..+|||+|||+|                +++|. +.+++    .++..++++++.+|+.+.     .+. .|+|++.
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~  150 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence            556789999999995                35676 54443    334457999999999873     233 4999854


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      ..    .......+++++++.|+|||++++. ...... ...+        ...          ..+.+++.++ +++ |
T Consensus       151 ~~----~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~-~~~~--------~~~----------~~~~~~l~~l-~~~-f  204 (227)
T 1g8a_A          151 VA----QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSI-DVTK--------EPE----------QVFREVEREL-SEY-F  204 (227)
T ss_dssp             CC----STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGT-CTTS--------CHH----------HHHHHHHHHH-HTT-S
T ss_pred             CC----CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCC-CCCC--------Chh----------hhhHHHHHHH-Hhh-c
Confidence            32    2223345599999999999999988 221111 1010        000          1146777777 777 9


Q ss_pred             CceEEEEcc
Q 043063          291 PHLRLYRVL  299 (301)
Q Consensus       291 ~~~~~~~~~  299 (301)
                      +.++...+.
T Consensus       205 ~~~~~~~~~  213 (227)
T 1g8a_A          205 EVIERLNLE  213 (227)
T ss_dssp             EEEEEEECT
T ss_pred             eeeeEeccC
Confidence            998887653

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=98.55  E-value=6.8e-08  Score=81.13  Aligned_cols=110  Identities=15%  Similarity=0.212  Sum_probs=75.6

Q ss_pred             CCCcceEEeecCC-ce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCC--CccCCc--ccEeeHhhh
Q 043063          158 FKGVKRLVDVGGS-AG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDM--FKSIPA--ADAIFMKWV  212 (301)
Q Consensus       158 ~~~~~~vlDvGgG-~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~--~~~~p~--~D~v~~~~v  212 (301)
                      .++..+||||||| +|              +++|. |.+++.+++     ..+++++.+|+  +.+++.  .|+|++.-.
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECCC
Confidence            4567899999999 85              46787 777777653     12799999996  334543  599998766


Q ss_pred             hccCChHH-----------------HHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccc
Q 043063          213 LTTWTDDE-----------------CKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKH  275 (301)
Q Consensus       213 lh~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~  275 (301)
                      +|..++..                 ...+|+++.+.|+|||++++.-+..       +                      
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-------~----------------------  183 (230)
T 3evz_A          133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDK-------E----------------------  183 (230)
T ss_dssp             CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESC-------H----------------------
T ss_pred             CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEeccc-------H----------------------
Confidence            65544322                 3689999999999999999863210       0                      


Q ss_pred             cCHHHHHHHHHhCCCCceEEE
Q 043063          276 MTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       276 rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      .+..++.+++++.||....+.
T Consensus       184 ~~~~~~~~~l~~~g~~~~~~~  204 (230)
T 3evz_A          184 KLLNVIKERGIKLGYSVKDIK  204 (230)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEE
T ss_pred             hHHHHHHHHHHHcCCceEEEE
Confidence            035677788888998665553

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.55  E-value=5.8e-08  Score=78.08  Aligned_cols=78  Identities=17%  Similarity=0.159  Sum_probs=60.9

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC------CceeEEeCCCCccCCc--ccEeeHhhhhcc
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI------PGVTHIGGDMFKSIPA--ADAIFMKWVLTT  215 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~------~ri~~~~gd~~~~~p~--~D~v~~~~vlh~  215 (301)
                      .....+|||||||+|             +++|. |.+++.+++.      ++++++.+|+.++++.  .|+|++..+   
T Consensus        33 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~i~~~~~---  109 (183)
T 2yxd_A           33 LNKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFNKAFIGGT---  109 (183)
T ss_dssp             CCTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCSEEEECSC---
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCcEEEECCc---
Confidence            455679999999996             46787 7777766542      6899999999876554  599999887   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                         .....+++++++.  |||++++...
T Consensus       110 ---~~~~~~l~~~~~~--~gG~l~~~~~  132 (183)
T 2yxd_A          110 ---KNIEKIIEILDKK--KINHIVANTI  132 (183)
T ss_dssp             ---SCHHHHHHHHHHT--TCCEEEEEES
T ss_pred             ---ccHHHHHHHHhhC--CCCEEEEEec
Confidence               2345889998887  9999998774

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.54  E-value=2.2e-08  Score=93.54  Aligned_cols=92  Identities=16%  Similarity=0.170  Sum_probs=71.5

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D  205 (301)
                      ..+++.++ .....+|||||||+|              +++|...+++.|++       .++|+++.+|+.+. +|. .|
T Consensus       148 ~~il~~l~-~~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD  226 (480)
T 3b3j_A          148 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVD  226 (480)
T ss_dssp             HHHHHTGG-GTTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEE
T ss_pred             HHHHHhhh-hcCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeE
Confidence            34555543 445679999999995              56788656665543       27899999999873 555 59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      +|++..++|++.+++....+.++++.|+|||++++.
T Consensus       227 ~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~  262 (480)
T 3b3j_A          227 IIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT  262 (480)
T ss_dssp             EEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence            999988888888777788899999999999998853

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.53  E-value=2.4e-08  Score=89.42  Aligned_cols=94  Identities=16%  Similarity=0.217  Sum_probs=70.5

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc-ccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA-ADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~-~D~  206 (301)
                      ..+++.++ .....+|||||||+|               +++|. +.+++.+++     ...++++.+|+++..+. .|+
T Consensus       186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~  264 (343)
T 2pjd_A          186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM  264 (343)
T ss_dssp             HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred             HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence            34455553 334568999999996               56787 667766653     23467889998865443 599


Q ss_pred             eeHhhhhcc---CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          207 IFMKWVLTT---WTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       207 v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      |++..++|+   ++.+...++|+++++.|+|||++++...
T Consensus       265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  304 (343)
T 2pjd_A          265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN  304 (343)
T ss_dssp             EEECCCCCSSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEECCCcccCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence            999999986   3455678999999999999999999765

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.53  E-value=1.8e-08  Score=90.40  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=66.7

Q ss_pred             CCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh  214 (301)
                      ..+..+|||||||+|              +++|..++++.+++       .++|+++.+|+.+. .|. .|+|++..++|
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            345679999999996              45677555555442       27899999999864 554 59999999988


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          215 TWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ++..+.....+.++++.|+|||++++.-
T Consensus       128 ~~~~~~~~~~l~~~~~~LkpgG~li~~~  155 (348)
T 2y1w_A          128 MLFNERMLESYLHAKKYLKPSGNMFPTI  155 (348)
T ss_dssp             TBTTTSHHHHHHHGGGGEEEEEEEESCE
T ss_pred             cCChHHHHHHHHHHHhhcCCCeEEEEec
Confidence            8887777788999999999999988543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.52  E-value=5.7e-08  Score=80.39  Aligned_cols=84  Identities=15%  Similarity=0.205  Sum_probs=65.4

Q ss_pred             hhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c--ccEee
Q 043063          152 LDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A--ADAIF  208 (301)
Q Consensus       152 ~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~--~D~v~  208 (301)
                      +..++ ..+..+|||||||+|             +.+|. |.+++.+++      .+++++..+|..+..+ .  .|+|+
T Consensus        70 ~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~  148 (210)
T 3lbf_A           70 TELLE-LTPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAII  148 (210)
T ss_dssp             HHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHhcC-CCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEE
Confidence            34443 567789999999996             56787 777776653      3579999999987633 2  49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +..++|++++        .+++.|+|||++++.-..
T Consensus       149 ~~~~~~~~~~--------~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          149 VTAAPPEIPT--------ALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             ESSBCSSCCT--------HHHHTEEEEEEEEEEECS
T ss_pred             EccchhhhhH--------HHHHhcccCcEEEEEEcC
Confidence            9999999886        367899999999887654

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=98.51  E-value=1.6e-07  Score=80.52  Aligned_cols=84  Identities=15%  Similarity=0.139  Sum_probs=60.7

Q ss_pred             CC-CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc--ccEeeH
Q 043063          158 FK-GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA--ADAIFM  209 (301)
Q Consensus       158 ~~-~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~--~D~v~~  209 (301)
                      .. +..+|||+|||+|              +++|+ |.+++.+++       .+|++++.+|+.+.   ++.  .|+|++
T Consensus        46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~  125 (259)
T 3lpm_A           46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTC  125 (259)
T ss_dssp             CCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEE
T ss_pred             CCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEE
Confidence            55 6789999999996              46787 777776653       25899999999865   222  499998


Q ss_pred             hhhhccC------------------ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          210 KWVLTTW------------------TDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       210 ~~vlh~~------------------~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .-.++..                  .......+++.+.+.|+|||+++++
T Consensus       126 npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~  175 (259)
T 3lpm_A          126 NPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFV  175 (259)
T ss_dssp             CCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEE
Confidence            5333211                  1133467999999999999999984

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.50  E-value=2.1e-08  Score=84.84  Aligned_cols=119  Identities=21%  Similarity=0.239  Sum_probs=68.3

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-CCce--------eEEe-CCCCccCCc---ccEeeHhh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-IPGV--------THIG-GDMFKSIPA---ADAIFMKW  211 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-~~ri--------~~~~-gd~~~~~p~---~D~v~~~~  211 (301)
                      ...+|||||||+|              +.+|+ +.+++.+++ ..++        .+.. .|+....+.   .|+++++.
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~~l  116 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFISL  116 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSSCG
T ss_pred             CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhhhH
Confidence            3569999999996              46787 666655432 2333        2322 232221122   36655442


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHh--hhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRT--RALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~--~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                                .++|+++++.|+|||++++.-  .+.- ...+..  ......|...        ...+.++|.++++++|
T Consensus       117 ----------~~~l~~i~rvLkpgG~lv~~~--~p~~-e~~~~~~~~~G~~~d~~~--------~~~~~~~l~~~l~~aG  175 (232)
T 3opn_A          117 ----------DLILPPLYEILEKNGEVAALI--KPQF-EAGREQVGKNGIIRDPKV--------HQMTIEKVLKTATQLG  175 (232)
T ss_dssp             ----------GGTHHHHHHHSCTTCEEEEEE--CHHH-HSCHHHHC-CCCCCCHHH--------HHHHHHHHHHHHHHHT
T ss_pred             ----------HHHHHHHHHhccCCCEEEEEE--Cccc-ccCHHHhCcCCeecCcch--------hHHHHHHHHHHHHHCC
Confidence                      479999999999999998852  1100 000000  0000011111        1237899999999999


Q ss_pred             CCceEEEEcc
Q 043063          290 FPHLRLYRVL  299 (301)
Q Consensus       290 f~~~~~~~~~  299 (301)
                      |++..+...+
T Consensus       176 f~v~~~~~~p  185 (232)
T 3opn_A          176 FSVKGLTFSP  185 (232)
T ss_dssp             EEEEEEEECS
T ss_pred             CEEEEEEEcc
Confidence            9998877543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=98.50  E-value=1.6e-07  Score=79.29  Aligned_cols=116  Identities=12%  Similarity=0.202  Sum_probs=72.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHH----HhhCCCCCceeEEeCCCCcc-----CCc-ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEV----VAEAPSIPGVTHIGGDMFKS-----IPA-ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v----~~~a~~~~ri~~~~gd~~~~-----~p~-~D~v~~~  210 (301)
                      +++..+|||+|||+|                +.+|. |.+    ++.+++..+|.++.+|...+     ++. .|+|++.
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d  153 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD  153 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence            667899999999995                35687 544    34444457899999998764     122 5998865


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      ...   ++ ....+++.+++.|+|||+|++.-.....+..                    ..-.+ ..++....|+++||
T Consensus       154 ~a~---~~-~~~il~~~~~~~LkpGG~lvisik~~~~d~t--------------------~~~~e-~~~~~~~~L~~~gf  208 (232)
T 3id6_C          154 IAQ---PD-QTDIAIYNAKFFLKVNGDMLLVIKARSIDVT--------------------KDPKE-IYKTEVEKLENSNF  208 (232)
T ss_dssp             CCC---TT-HHHHHHHHHHHHEEEEEEEEEEEC---------------------------CCSSS-STTHHHHHHHHTTE
T ss_pred             CCC---hh-HHHHHHHHHHHhCCCCeEEEEEEccCCcccC--------------------CCHHH-HHHHHHHHHHHCCC
Confidence            332   33 2233455666699999999987321111100                    00011 22334456778899


Q ss_pred             CceEEEEc
Q 043063          291 PHLRLYRV  298 (301)
Q Consensus       291 ~~~~~~~~  298 (301)
                      +..+...+
T Consensus       209 ~~~~~~~l  216 (232)
T 3id6_C          209 ETIQIINL  216 (232)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEecc
Confidence            99998876

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.49  E-value=3.3e-08  Score=83.89  Aligned_cols=106  Identities=16%  Similarity=0.137  Sum_probs=75.3

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-C----Cc-ccEeeH
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-I----PA-ADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~----p~-~D~v~~  209 (301)
                      +.+..+|||||||+|               +++|. +.+++.+++      ..+|+++.+|+.+. .    +. .|+|++
T Consensus        68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~  147 (240)
T 1xdz_A           68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA  147 (240)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred             cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence            445679999999996               46787 767766653      24799999998653 2    22 499998


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      ..+    .+  ...+++.+++.|+|||++++.+....       ..                     ...++.+.+++.|
T Consensus       148 ~~~----~~--~~~~l~~~~~~LkpgG~l~~~~g~~~-------~~---------------------~~~~~~~~l~~~g  193 (240)
T 1xdz_A          148 RAV----AR--LSVLSELCLPLVKKNGLFVALKAASA-------EE---------------------ELNAGKKAITTLG  193 (240)
T ss_dssp             ECC----SC--HHHHHHHHGGGEEEEEEEEEEECC-C-------HH---------------------HHHHHHHHHHHTT
T ss_pred             ecc----CC--HHHHHHHHHHhcCCCCEEEEEeCCCc-------hH---------------------HHHHHHHHHHHcC
Confidence            663    33  46899999999999999988632110       00                     1345667888899


Q ss_pred             CCceEEEE
Q 043063          290 FPHLRLYR  297 (301)
Q Consensus       290 f~~~~~~~  297 (301)
                      |...++.+
T Consensus       194 ~~~~~~~~  201 (240)
T 1xdz_A          194 GELENIHS  201 (240)
T ss_dssp             EEEEEEEE
T ss_pred             CeEeEEEE
Confidence            98877765

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.49  E-value=7.9e-08  Score=87.11  Aligned_cols=92  Identities=14%  Similarity=0.179  Sum_probs=68.6

Q ss_pred             HhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCCC---------CceeEEeCCCCccCCc-
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPSI---------PGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~~---------~ri~~~~gd~~~~~p~-  203 (301)
                      .+++.++ .....+|||+|||+|               +.+|. +.+++.+++.         .+++|..+|++++++. 
T Consensus       213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~  291 (375)
T 4dcm_A          213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF  291 (375)
T ss_dssp             HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred             HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence            3455554 444589999999996               46787 7777776541         2688999999987664 


Q ss_pred             -ccEeeHhhhhcc---CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          204 -ADAIFMKWVLTT---WTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       204 -~D~v~~~~vlh~---~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       .|+|++.-.+|.   .++....++++++++.|+|||+++++.
T Consensus       292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~  334 (375)
T 4dcm_A          292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKINGELYIVA  334 (375)
T ss_dssp             CEEEEEECCCC-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence             599999988884   445556689999999999999999864

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.47  E-value=1.7e-07  Score=76.33  Aligned_cols=86  Identities=10%  Similarity=0.039  Sum_probs=66.5

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-c-ccEeeHhhhh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-A-ADAIFMKWVL  213 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~-~D~v~~~~vl  213 (301)
                      ...+|||+|||+|              +.+|. |.+++.+++      .++++++.+|+.+.   ++ . .|+|++...+
T Consensus        44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p~  123 (189)
T 3p9n_A           44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPPY  123 (189)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCCT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCCC
Confidence            4578999999996              56787 778777664      25899999998764   22 2 5999998776


Q ss_pred             ccCChHHHHHHHHHHHH--hCCCCCEEEEeccccC
Q 043063          214 TTWTDDECKLIMENCYK--AIPAGGKLIACEPVLP  246 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~--aL~pgg~lli~e~~~~  246 (301)
                      |.. .++..++++.+.+  .|+|||++++......
T Consensus       124 ~~~-~~~~~~~l~~~~~~~~L~pgG~l~~~~~~~~  157 (189)
T 3p9n_A          124 NVD-SADVDAILAALGTNGWTREGTVAVVERATTC  157 (189)
T ss_dssp             TSC-HHHHHHHHHHHHHSSSCCTTCEEEEEEETTS
T ss_pred             Ccc-hhhHHHHHHHHHhcCccCCCeEEEEEecCCC
Confidence            543 3456799999999  9999999998776443

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.47  E-value=7.7e-08  Score=83.39  Aligned_cols=87  Identities=26%  Similarity=0.412  Sum_probs=66.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-  203 (301)
                      ..++..++ +.+..+|||+|||+|                +.+|. |..++.+++       .+++++..+|+.+.++. 
T Consensus       102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~  180 (277)
T 1o54_A          102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK  180 (277)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred             HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence            34555564 667789999999995                45676 777666553       15899999999876654 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                       .|+|++     +.++.  ..+|+++.++|+|||++++...
T Consensus       181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~pgG~l~~~~~  214 (277)
T 1o54_A          181 DVDALFL-----DVPDP--WNYIDKCWEALKGGGRFATVCP  214 (277)
T ss_dssp             SEEEEEE-----CCSCG--GGTHHHHHHHEEEEEEEEEEES
T ss_pred             ccCEEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeC
Confidence             599987     34544  3889999999999999998775

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.46  E-value=1.3e-07  Score=78.58  Aligned_cols=81  Identities=14%  Similarity=0.250  Sum_probs=58.1

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHH----HhhCCCCCceeEEeCCCCcc-----CCc-ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEV----VAEAPSIPGVTHIGGDMFKS-----IPA-ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v----~~~a~~~~ri~~~~gd~~~~-----~p~-~D~v~~~~  211 (301)
                      ..+..+|||||||+|               +++|. |.+    .+.+++..++.++.+|+..+     ++. .|+|++. 
T Consensus        55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~-  133 (210)
T 1nt2_A           55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD-  133 (210)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence            556789999999996               45687 543    44444456899999998763     233 4999876 


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +.+   .++...+|+++++.|+|||++++.-
T Consensus       134 ~~~---~~~~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          134 IAQ---KNQIEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             CCS---TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccC---hhHHHHHHHHHHHHhCCCCEEEEEE
Confidence            222   2334466999999999999999883

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.45  E-value=2.3e-07  Score=78.73  Aligned_cols=115  Identities=11%  Similarity=0.024  Sum_probs=82.0

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCC-c-ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIP-A-ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~~  216 (301)
                      ...+|||||||.|               +.+|+ +.+++.+++     ..+.++...|+....| . +|++++.-++|++
T Consensus       132 ~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~L  211 (281)
T 3lcv_B          132 RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPCL  211 (281)
T ss_dssp             CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHHH
T ss_pred             CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHHh
Confidence            4689999999996               46787 666666553     2458889999987744 3 6999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                      .++.....+ ++.++|+|+|.++..+.-.=.++.  +      .++            ......|.+.+.+.|+.+.++
T Consensus       212 e~q~kg~g~-~ll~aL~~~~vvVSfp~ksl~Grs--~------gm~------------~~Y~~~~e~~~~~~g~~~~~~  269 (281)
T 3lcv_B          212 ETQQRGSGW-EVIDIVNSPNIVVTFPTKSLGQRS--K------GMF------------QNYSQSFESQARERSCRIQRL  269 (281)
T ss_dssp             HHHSTTHHH-HHHHHSSCSEEEEEEECC---------------CHH------------HHHHHHHHHHHHHHTCCEEEE
T ss_pred             hhhhhHHHH-HHHHHhCCCCEEEeccchhhcCCC--c------chh------------hHHHHHHHHHHHhcCCceeee
Confidence            988766677 899999999988888762211111  1      111            113678888898888855443

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.41  E-value=1.5e-07  Score=78.96  Aligned_cols=86  Identities=19%  Similarity=0.258  Sum_probs=65.3

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCC-c--ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIP-A--ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p-~--~D~v~  208 (301)
                      .+++.+. ..+..+|||||||+|             +++|. +.+++.+++    ..+++++.+|+.+..+ .  .|+|+
T Consensus        61 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  139 (231)
T 1vbf_A           61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVV  139 (231)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCccEEE
Confidence            3444443 556789999999996             56787 777766653    2389999999987543 2  49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +..++|++++        ++.+.|+|||++++....
T Consensus       140 ~~~~~~~~~~--------~~~~~L~pgG~l~~~~~~  167 (231)
T 1vbf_A          140 VWATAPTLLC--------KPYEQLKEGGIMILPIGV  167 (231)
T ss_dssp             ESSBBSSCCH--------HHHHTEEEEEEEEEEECS
T ss_pred             ECCcHHHHHH--------HHHHHcCCCcEEEEEEcC
Confidence            9999998875        477899999999988653

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.41  E-value=8.1e-07  Score=74.41  Aligned_cols=79  Identities=14%  Similarity=0.064  Sum_probs=61.1

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---ccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA---ADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~---~D~v~~~~v  212 (301)
                      ++..+|+|||||+|               +.+|. |..++.|++       .++|++..+|.++.++.   .|+|++..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~   93 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGM   93 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCC
Confidence            35679999999995               45687 777766653       36899999999987652   598887654


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                          ..+-...||..+.+.|+|+|++++.
T Consensus        94 ----Gg~~i~~Il~~~~~~L~~~~~lVlq  118 (225)
T 3kr9_A           94 ----GGRLIARILEEGLGKLANVERLILQ  118 (225)
T ss_dssp             ----CHHHHHHHHHHTGGGCTTCCEEEEE
T ss_pred             ----ChHHHHHHHHHHHHHhCCCCEEEEE
Confidence                3444679999999999999987763

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=98.41  E-value=2e-07  Score=79.48  Aligned_cols=83  Identities=19%  Similarity=0.227  Sum_probs=62.5

Q ss_pred             CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CC---cccEee
Q 043063          159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IP---AADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p---~~D~v~  208 (301)
                      .+..+|||||||+|                +.+|. |..++.+++       .++|+++.+|+.+.   .+   ..|+|+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~  141 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF  141 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence            35689999999995                46787 777766653       25899999998653   22   259998


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +..     +......+|+++.+.|+|||+|++.+....
T Consensus       142 ~d~-----~~~~~~~~l~~~~~~LkpGG~lv~~~~~~~  174 (248)
T 3tfw_A          142 IDA-----DKPNNPHYLRWALRYSRPGTLIIGDNVVRD  174 (248)
T ss_dssp             ECS-----CGGGHHHHHHHHHHTCCTTCEEEEECCSGG
T ss_pred             ECC-----chHHHHHHHHHHHHhcCCCeEEEEeCCCcC
Confidence            743     344456899999999999999988776554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.40  E-value=9.1e-08  Score=86.79  Aligned_cols=87  Identities=16%  Similarity=0.209  Sum_probs=65.7

Q ss_pred             CCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh  214 (301)
                      .....+|||||||+|              +++|...+++.+++       .++|+++.+|+.+. +|. .|+|++..+.|
T Consensus        61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            445689999999996              46677666555543       36799999999765 554 59999977666


Q ss_pred             cCCh-HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          215 TWTD-DECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       215 ~~~d-~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      .... .....+|+.+++.|+|||.+++.+..
T Consensus       141 ~l~~e~~~~~~l~~~~~~LkpgG~li~~~~~  171 (376)
T 3r0q_C          141 FLLRESMFDSVISARDRWLKPTGVMYPSHAR  171 (376)
T ss_dssp             TBTTTCTHHHHHHHHHHHEEEEEEEESSEEE
T ss_pred             cccchHHHHHHHHHHHhhCCCCeEEEEecCe
Confidence            5543 33567999999999999999877654

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.39  E-value=2.6e-08  Score=80.79  Aligned_cols=80  Identities=14%  Similarity=0.149  Sum_probs=60.9

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-Cc-ccEeeHhhhh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-PA-ADAIFMKWVL  213 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p~-~D~v~~~~vl  213 (301)
                      ....+|||+|||+|               +.+|. +.+++.+++       ..++++  .|..... |. +|+|++..+|
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~L  125 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKML  125 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhHH
Confidence            35689999999995               45687 777777654       136666  6665543 33 5999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      |.+ ++ ....+.+++++|+|||.++..+
T Consensus       126 HlL-~~-~~~al~~v~~~L~pggvfISfp  152 (200)
T 3fzg_A          126 PVL-KQ-QDVNILDFLQLFHTQNFVISFP  152 (200)
T ss_dssp             HHH-HH-TTCCHHHHHHTCEEEEEEEEEE
T ss_pred             Hhh-hh-hHHHHHHHHHHhCCCCEEEEeC
Confidence            999 43 3466669999999999999888

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=98.39  E-value=1.6e-07  Score=76.86  Aligned_cols=89  Identities=16%  Similarity=0.171  Sum_probs=64.8

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--C-Cc-ccEeeH
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--I-PA-ADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~-p~-~D~v~~  209 (301)
                      .+...+|||+|||+|                +++|. +.+++.+++       .++++++.+|+.+.  . +. .|+|++
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~   99 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF   99 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence            445679999999995                46787 777776654       26899999998653  2 23 599998


Q ss_pred             hhhhcc-------CChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          210 KWVLTT-------WTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 ~~vlh~-------~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      ...+..       ...+...++++++.+.|+|||++++......
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~  143 (197)
T 3eey_A          100 NLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGG  143 (197)
T ss_dssp             EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECCBT
T ss_pred             cCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEccCC
Confidence            765511       1223456799999999999999998876443

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.36  E-value=1.8e-07  Score=77.59  Aligned_cols=84  Identities=20%  Similarity=0.289  Sum_probs=63.7

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c--c
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A--A  204 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~--~  204 (301)
                      +++.+. ..+..+|||||||+|                +++|. |.+++.+++      .+++++..+|+...++ .  .
T Consensus        69 ~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  147 (215)
T 2yxe_A           69 MCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPY  147 (215)
T ss_dssp             HHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCE
T ss_pred             HHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCe
Confidence            334443 556789999999995                35676 677766653      2579999999876554 2  4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      |+|++..++|++++        ++++.|+|||++++...
T Consensus       148 D~v~~~~~~~~~~~--------~~~~~L~pgG~lv~~~~  178 (215)
T 2yxe_A          148 DRIYTTAAGPKIPE--------PLIRQLKDGGKLLMPVG  178 (215)
T ss_dssp             EEEEESSBBSSCCH--------HHHHTEEEEEEEEEEES
T ss_pred             eEEEECCchHHHHH--------HHHHHcCCCcEEEEEEC
Confidence            99999999998874        67889999999988764

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.35  E-value=5.9e-07  Score=76.50  Aligned_cols=53  Identities=13%  Similarity=0.184  Sum_probs=41.7

Q ss_pred             EEeCCCCccC------Cc--ccEeeHhhhhccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          192 HIGGDMFKSI------PA--ADAIFMKWVLTTWTD-------DECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       192 ~~~gd~~~~~------p~--~D~v~~~~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      |..+|+++..      +.  .|+|++...++...+       +....+++++++.|+|||++++....
T Consensus       149 ~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  216 (250)
T 1o9g_A          149 IRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIAVTDRS  216 (250)
T ss_dssp             EEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEEEEESS
T ss_pred             eeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEEEEeCcc
Confidence            9999998864      33  499999876665443       55679999999999999999985543

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=98.35  E-value=1.3e-07  Score=79.02  Aligned_cols=84  Identities=20%  Similarity=0.430  Sum_probs=63.6

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CC------cccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IP------AADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p------~~D~  206 (301)
                      +..+|||||||+|                +.+|. |.+++.+++       .++|+++.+|+.+.   .+      ..|+
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~  137 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  137 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence            4679999999995                46787 777777654       25899999998542   33      2599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++....|++.+.  .++++.+ +.|+|||+|++.+...+
T Consensus       138 V~~d~~~~~~~~~--~~~~~~~-~~LkpgG~lv~~~~~~~  174 (221)
T 3u81_A          138 VFLDHWKDRYLPD--TLLLEKC-GLLRKGTVLLADNVIVP  174 (221)
T ss_dssp             EEECSCGGGHHHH--HHHHHHT-TCCCTTCEEEESCCCCC
T ss_pred             EEEcCCcccchHH--HHHHHhc-cccCCCeEEEEeCCCCc
Confidence            9998877766543  4678877 99999999988877654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.34  E-value=3.1e-07  Score=83.28  Aligned_cols=83  Identities=12%  Similarity=0.134  Sum_probs=66.1

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CC--cccEeeHhhhhcc--
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IP--AADAIFMKWVLTT--  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p--~~D~v~~~~vlh~--  215 (301)
                      ...+|||+|||+|             +.+|. +.+++.+++     .-+++++.+|+.+. .+  ..|+|++...+|.  
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~~~  312 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGG  312 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCTTC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhhcc
Confidence            4579999999996             46787 777777654     12589999999876 33  2599999999887  


Q ss_pred             -CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          216 -WTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       216 -~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                       ...+....+++++++.|+|||++++..
T Consensus       313 ~~~~~~~~~~l~~~~~~LkpGG~l~iv~  340 (381)
T 3dmg_A          313 AVILDVAQAFVNVAAARLRPGGVFFLVS  340 (381)
T ss_dssp             SSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence             345667899999999999999998864

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.33  E-value=1.2e-07  Score=81.09  Aligned_cols=80  Identities=20%  Similarity=0.232  Sum_probs=59.7

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-----c-ccEeeH
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-----A-ADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-----~-~D~v~~  209 (301)
                      .....+|||||||+|               +.+|. +..++.+++      ..+|+++.+|+.+..+     . .|+|++
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s  157 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVA  157 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEE
Confidence            446789999999996               46786 666666553      2569999999865321     2 599998


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..+    .+  ...+++.+.+.|+|||++++...
T Consensus       158 ~a~----~~--~~~ll~~~~~~LkpgG~l~~~~g  185 (249)
T 3g89_A          158 RAV----AP--LCVLSELLLPFLEVGGAAVAMKG  185 (249)
T ss_dssp             ESS----CC--HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             CCc----CC--HHHHHHHHHHHcCCCeEEEEEeC
Confidence            653    33  35899999999999999998664

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.33  E-value=1.2e-07  Score=79.41  Aligned_cols=82  Identities=12%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc----CCc--ccEeeHhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS----IPA--ADAIFMKW  211 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~----~p~--~D~v~~~~  211 (301)
                      ...+|||||||+|               +++|. +.+++.+++      ..+|+++.+|+.+.    ++.  .|.|++..
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            4578999999996               56787 777766543      36799999998653    444  38887764


Q ss_pred             hhccCChHHH-------HHHHHHHHHhCCCCCEEEEec
Q 043063          212 VLTTWTDDEC-------KLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       212 vlh~~~d~~~-------~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ... |+....       ..+++.+++.|+|||++++..
T Consensus       114 ~~p-~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t  150 (218)
T 3dxy_A          114 PDP-WHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT  150 (218)
T ss_dssp             CCC-CCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCC-ccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence            332 332211       259999999999999988764

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.32  E-value=1.8e-07  Score=83.96  Aligned_cols=81  Identities=21%  Similarity=0.296  Sum_probs=61.1

Q ss_pred             CcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      ...+|||||||+|              +++|..++++.|++       .++|+++.+|+.+. +|.  .|+|++..+.|.
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~~  145 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  145 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CCCEEEEEeccchHHHHHHHHCCCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccccc
Confidence            4579999999996              46787656666543       36799999999875 663  599998766544


Q ss_pred             C-ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          216 W-TDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       216 ~-~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      + .......+|+.+.+.|+|||+++.
T Consensus       146 l~~~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          146 LFYESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             ccCchhHHHHHHHHHHhCCCCCEEcc
Confidence            3 223356899999999999999873

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.32  E-value=4.6e-07  Score=78.65  Aligned_cols=106  Identities=15%  Similarity=0.093  Sum_probs=76.8

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhhc
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVLT  214 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vlh  214 (301)
                      ++..+|||+|||+|              +.+|. |.+++.+++       .++++++.+|+++..+.  .|+|++..   
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~---  200 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY---  200 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC---
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECC---
Confidence            45689999999995              46787 777776653       25799999999876433  59998742   


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceE
Q 043063          215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~  294 (301)
                        +. ....+++++.+.|+|||++++.+.......                        .....+++.+.++++||+...
T Consensus       201 --p~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~------------------------~~~~~~~i~~~~~~~G~~~~~  253 (278)
T 2frn_A          201 --VV-RTHEFIPKALSIAKDGAIIHYHNTVPEKLM------------------------PREPFETFKRITKEYGYDVEK  253 (278)
T ss_dssp             --CS-SGGGGHHHHHHHEEEEEEEEEEEEEEGGGT------------------------TTTTHHHHHHHHHHTTCEEEE
T ss_pred             --ch-hHHHHHHHHHHHCCCCeEEEEEEeeccccc------------------------cccHHHHHHHHHHHcCCeeEE
Confidence              22 235789999999999999999887532110                        011467788889999988766

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.32  E-value=2.6e-07  Score=82.63  Aligned_cols=82  Identities=22%  Similarity=0.333  Sum_probs=60.5

Q ss_pred             CCCcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CC-c-ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IP-A-ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p-~-~D~v~~~~vl  213 (301)
                      ..+..+|||||||+|              +++|..++++.+++       .++|+++.+|+.+. +| . .|+|++..+.
T Consensus        62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  141 (340)
T 2fyt_A           62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  141 (340)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCch
Confidence            445679999999995              46687556666553       27899999999874 66 3 5999976633


Q ss_pred             ccC-ChHHHHHHHHHHHHhCCCCCEEE
Q 043063          214 TTW-TDDECKLIMENCYKAIPAGGKLI  239 (301)
Q Consensus       214 h~~-~d~~~~~iL~~~~~aL~pgg~ll  239 (301)
                      +.+ .......+|+++++.|+|||+++
T Consensus       142 ~~l~~~~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          142 YFLLFESMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             TTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred             hhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence            222 22335689999999999999987

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.31  E-value=5.7e-07  Score=71.56  Aligned_cols=84  Identities=23%  Similarity=0.346  Sum_probs=62.3

Q ss_pred             CCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc---------CCc--ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS---------IPA--ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~---------~p~--~D~v~~~  210 (301)
                      .....+|||+|||+|                +++|...++    ...++++..+|+.+.         ++.  .|+|++.
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~   95 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMD----PIVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSD   95 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCC----CCTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcccc----ccCcEEEEEcccccchhhhhhhccCCCCceeEEEEC
Confidence            445679999999996                344553322    237899999999764         443  4999999


Q ss_pred             hhhccCChHH---------HHHHHHHHHHhCCCCCEEEEecccc
Q 043063          211 WVLTTWTDDE---------CKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       211 ~vlh~~~d~~---------~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      ..+|..++..         ...+|+++.+.|+|||++++.....
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~  139 (180)
T 1ej0_A           96 MAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQG  139 (180)
T ss_dssp             CCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESS
T ss_pred             CCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            8888765531         1588999999999999999877643

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.30  E-value=4.2e-07  Score=76.55  Aligned_cols=116  Identities=14%  Similarity=0.158  Sum_probs=74.9

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hH----HHhhCCCCCceeEEeCCCCcc--CC---c-ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PE----VVAEAPSIPGVTHIGGDMFKS--IP---A-ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~----v~~~a~~~~ri~~~~gd~~~~--~p---~-~D~v~~~  210 (301)
                      +.+..+|||||||+|                +++|. |.    +++.++...+++++.+|+.+.  +|   . .|+|++.
T Consensus        75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~  154 (233)
T 2ipx_A           75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD  154 (233)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence            566789999999995                35676 44    344444458899999999873  22   2 4999974


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                      ..    ..+....+++++++.|+|||++++.-.........          .....          ...+ .++|+++||
T Consensus       155 ~~----~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~~~~----------~~~~~----------~~~~-~~~l~~~Gf  209 (233)
T 2ipx_A          155 VA----QPDQTRIVALNAHTFLRNGGHFVISIKANCIDSTA----------SAEAV----------FASE-VKKMQQENM  209 (233)
T ss_dssp             CC----CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHCSSS----------CHHHH----------HHHH-HHTTGGGTE
T ss_pred             CC----CccHHHHHHHHHHHHcCCCeEEEEEEcccccccCC----------CHHHH----------HHHH-HHHHHHCCC
Confidence            32    33344677999999999999998832110000000          00000          1123 588899999


Q ss_pred             CceEEEEc
Q 043063          291 PHLRLYRV  298 (301)
Q Consensus       291 ~~~~~~~~  298 (301)
                      +++++.++
T Consensus       210 ~~~~~~~~  217 (233)
T 2ipx_A          210 KPQEQLTL  217 (233)
T ss_dssp             EEEEEEEC
T ss_pred             ceEEEEec
Confidence            99987765

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.30  E-value=2.1e-06  Score=72.08  Aligned_cols=103  Identities=15%  Similarity=0.066  Sum_probs=76.5

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-Cc--ccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-PA--ADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p~--~D~v~~~~v  212 (301)
                      ++..+|+|||||+|               +..|. |..++.|++       .+||++..+|.++.+ |.  .|+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGm   99 (230)
T 3lec_A           20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGM   99 (230)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCC
Confidence            45689999999995               45687 777776654       368999999999874 32  599887654


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCc
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPH  292 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~  292 (301)
                          .-+-..+||....+.|+++|+|++.-. .                               ...++++||.+.||.+
T Consensus       100 ----Gg~lI~~IL~~~~~~l~~~~~lIlqp~-~-------------------------------~~~~lr~~L~~~Gf~i  143 (230)
T 3lec_A          100 ----GGRLIADILNNDIDKLQHVKTLVLQPN-N-------------------------------REDDLRKWLAANDFEI  143 (230)
T ss_dssp             ----CHHHHHHHHHHTGGGGTTCCEEEEEES-S-------------------------------CHHHHHHHHHHTTEEE
T ss_pred             ----chHHHHHHHHHHHHHhCcCCEEEEECC-C-------------------------------ChHHHHHHHHHCCCEE
Confidence                334567899999999999998776542 0                               2456778888888887


Q ss_pred             eEEEE
Q 043063          293 LRLYR  297 (301)
Q Consensus       293 ~~~~~  297 (301)
                      .+..-
T Consensus       144 ~~E~l  148 (230)
T 3lec_A          144 VAEDI  148 (230)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77653

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.28  E-value=5.5e-07  Score=75.18  Aligned_cols=83  Identities=19%  Similarity=0.229  Sum_probs=61.7

Q ss_pred             CCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC--------cccE
Q 043063          159 KGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP--------AADA  206 (301)
Q Consensus       159 ~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--------~~D~  206 (301)
                      .+..+|||||||+|                +.+|. |.+++.+++       .++|+++.+|+.+.++        ..|+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~  136 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF  136 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence            35679999999995                46787 777766543       3579999999875422        2599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++...     ......+++++.+.|+|||.+++.+...+
T Consensus       137 v~~d~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  171 (223)
T 3duw_A          137 IFIDAD-----KQNNPAYFEWALKLSRPGTVIIGDNVVRE  171 (223)
T ss_dssp             EEECSC-----GGGHHHHHHHHHHTCCTTCEEEEESCSGG
T ss_pred             EEEcCC-----cHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            986543     33456899999999999998888776554

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=98.28  E-value=3.1e-07  Score=77.46  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=62.8

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC----c-ccEeeHh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP----A-ADAIFMK  210 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p----~-~D~v~~~  210 (301)
                      .+..+|||||||+|               +.+|. |.+++.+++       .++|+++.+|+.+..|    . .|+|++.
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~  149 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID  149 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence            35679999999996               46787 777776654       2589999999987544    2 4999854


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .     +......+++++.+.|+|||+|++.+....
T Consensus       150 ~-----~~~~~~~~l~~~~~~LkpgG~lv~d~~~~~  180 (232)
T 3ntv_A          150 A-----AKAQSKKFFEIYTPLLKHQGLVITDNVLYH  180 (232)
T ss_dssp             T-----TSSSHHHHHHHHGGGEEEEEEEEEECTTGG
T ss_pred             C-----cHHHHHHHHHHHHHhcCCCeEEEEeeCCcC
Confidence            3     233356899999999999999988665543

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.28  E-value=3.6e-07  Score=77.10  Aligned_cols=86  Identities=26%  Similarity=0.320  Sum_probs=64.9

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---c
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---A  204 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~  204 (301)
                      ..+++.++ ..+..+|||||||+|              +++|. |.+++.+++      .+++++..+|+..+++.   .
T Consensus        81 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f  159 (235)
T 1jg1_A           81 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPY  159 (235)
T ss_dssp             HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCc
Confidence            44455554 667789999999995              46786 777776653      24699999998555553   4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      |+|++..++|++++        ++.+.|+|||++++.-.
T Consensus       160 D~Ii~~~~~~~~~~--------~~~~~L~pgG~lvi~~~  190 (235)
T 1jg1_A          160 DVIIVTAGAPKIPE--------PLIEQLKIGGKLIIPVG  190 (235)
T ss_dssp             EEEEECSBBSSCCH--------HHHHTEEEEEEEEEEEC
T ss_pred             cEEEECCcHHHHHH--------HHHHhcCCCcEEEEEEe
Confidence            99999999998875        56789999999988654

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.28  E-value=6.3e-07  Score=74.55  Aligned_cols=82  Identities=15%  Similarity=0.279  Sum_probs=57.8

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc--ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA--ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~--~D~v~~~~v  212 (301)
                      ...+|||||||+|               +++|. +.+++.+++      .++|+++.+|+.+.   ++.  .|.|++...
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~  117 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  117 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence            3568999999996               56787 777766543      36899999998752   443  387765432


Q ss_pred             hccCChHH-------HHHHHHHHHHhCCCCCEEEEec
Q 043063          213 LTTWTDDE-------CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       213 lh~~~d~~-------~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      . .|+...       ...+|+++++.|+|||+|++..
T Consensus       118 ~-p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t  153 (213)
T 2fca_A          118 D-PWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  153 (213)
T ss_dssp             C-CCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             C-CCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence            2 122110       2578999999999999998764

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.27  E-value=9.6e-07  Score=73.30  Aligned_cols=82  Identities=18%  Similarity=0.358  Sum_probs=59.6

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc--ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA--ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~--~D~v~~~~v  212 (301)
                      ...+|||||||+|               +++|. +.+++.+++      .++++++.+|+.+.   ++.  .|+|++...
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            3568999999996               56787 777776653      26899999999762   333  499987754


Q ss_pred             hccCChH-------HHHHHHHHHHHhCCCCCEEEEec
Q 043063          213 LTTWTDD-------ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       213 lh~~~d~-------~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      .+ |...       ....+|+++++.|+|||++++..
T Consensus       121 ~~-~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  156 (214)
T 1yzh_A          121 DP-WPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT  156 (214)
T ss_dssp             CC-CCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred             CC-ccccchhhhccCCHHHHHHHHHHcCCCcEEEEEe
Confidence            32 2211       12479999999999999988753

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.26  E-value=6.2e-07  Score=73.37  Aligned_cols=90  Identities=24%  Similarity=0.392  Sum_probs=60.8

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeehhHHHhhCCCCCceeEEeCCCCccC--------------C
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDLPEVVAEAPSIPGVTHIGGDMFKSI--------------P  202 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~--------------p  202 (301)
                      ++.+.+..+++..+|||+|||+|             +.+|+.+.    ....+++++.+|+.+..              .
T Consensus        15 ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~----~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~   90 (191)
T 3dou_A           15 FLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEM----EEIAGVRFIRCDIFKETIFDDIDRALREEGIE   90 (191)
T ss_dssp             HHHHHHCCSCTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCC----CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred             HHHHHcCCCCCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccc----ccCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence            34444433566789999999997             46787432    22468999999998641              2


Q ss_pred             cccEeeHhhhhc---------cCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          203 AADAIFMKWVLT---------TWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       203 ~~D~v~~~~vlh---------~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..|+|++.....         ...-+.+..+|+.+.+.|+|||++++...
T Consensus        91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~  140 (191)
T 3dou_A           91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF  140 (191)
T ss_dssp             SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            359988743211         11112245789999999999999987665

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.25  E-value=1.4e-07  Score=77.86  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=60.9

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCC------C--CceeEEeCCCCccC-----Cc-ccEeeHhh
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I--PGVTHIGGDMFKSI-----PA-ADAIFMKW  211 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~~-----p~-~D~v~~~~  211 (301)
                      ..+|||+|||+|              +.+|. |.+++.+++      .  ++++++.+|+.+..     .. .|+|++..
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~  133 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP  133 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred             CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence            468999999996              46787 777777654      2  58999999987532     24 69999887


Q ss_pred             hhccCChHHHHHHHHHH--HHhCCCCCEEEEecccc
Q 043063          212 VLTTWTDDECKLIMENC--YKAIPAGGKLIACEPVL  245 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~--~~aL~pgg~lli~e~~~  245 (301)
                      .+| ..  ....+++.+  .+.|+|||++++.....
T Consensus       134 ~~~-~~--~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          134 PFH-FN--LAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             CSS-SC--HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCC-Cc--cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            755 33  345788888  55799999988876543

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.24  E-value=6.3e-07  Score=79.27  Aligned_cols=84  Identities=20%  Similarity=0.412  Sum_probs=63.2

Q ss_pred             hhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c--c
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A--A  204 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~--~  204 (301)
                      +++.++ ..+..+|||||||+|                +++|+ +.+++.+++      .++++++.+|+.+..+ .  .
T Consensus        67 l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~f  145 (317)
T 1dl5_A           67 FMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPY  145 (317)
T ss_dssp             HHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCE
T ss_pred             HHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCe
Confidence            344443 566789999999995                35676 677766653      2569999999987533 2  4


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      |+|++..++|+++        +++++.|+|||++++...
T Consensus       146 D~Iv~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  176 (317)
T 1dl5_A          146 DVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPIN  176 (317)
T ss_dssp             EEEEECSBBSCCC--------HHHHHHEEEEEEEEEEBC
T ss_pred             EEEEEcCCHHHHH--------HHHHHhcCCCcEEEEEEC
Confidence            9999999999887        356779999999998754

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.22  E-value=8e-07  Score=75.20  Aligned_cols=83  Identities=10%  Similarity=0.223  Sum_probs=55.6

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCC------------CCCceeEEeCCCCcc----CCc--c
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAP------------SIPGVTHIGGDMFKS----IPA--A  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~------------~~~ri~~~~gd~~~~----~p~--~  204 (301)
                      ....+|||||||+|               +++|. +.+++.|+            ...+|+++.+|+.+.    ++.  .
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            34578999999996               57787 66665432            246899999999763    344  3


Q ss_pred             cEeeHhhhhccCChH-H------HHHHHHHHHHhCCCCCEEEEec
Q 043063          205 DAIFMKWVLTTWTDD-E------CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       205 D~v~~~~vlh~~~d~-~------~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      |.|++...- .|... .      ...+|+++++.|+|||+|++..
T Consensus       125 D~v~~~~~d-p~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t  168 (235)
T 3ckk_A          125 TKMFFLFPD-PHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT  168 (235)
T ss_dssp             EEEEEESCC------------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEeCCC-chhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence            887753221 11110 0      1379999999999999998764

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.21  E-value=5.1e-07  Score=76.81  Aligned_cols=78  Identities=14%  Similarity=0.357  Sum_probs=55.2

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCC--------------CCCceeEEeCCCCccCC----c-
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAP--------------SIPGVTHIGGDMFKSIP----A-  203 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~--------------~~~ri~~~~gd~~~~~p----~-  203 (301)
                      +...+|||||||+|               +++|. +.+++.++              ..++++++.+|+++.++    . 
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            45679999999996               56786 66665442              23689999999986433    2 


Q ss_pred             -ccEeeHhhhhccCChHHH-----------HHHHHHHHHhCCCCCEEEEe
Q 043063          204 -ADAIFMKWVLTTWTDDEC-----------KLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~-----------~~iL~~~~~aL~pgg~lli~  241 (301)
                       .|.|++     +++|...           ..+|+++.+.|+|||+|++.
T Consensus       128 ~~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          128 QLSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             CEEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEE
Confidence             265552     3344321           37999999999999999885

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.20  E-value=3.1e-07  Score=81.69  Aligned_cols=81  Identities=20%  Similarity=0.346  Sum_probs=60.0

Q ss_pred             CcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CC-c-ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IP-A-ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p-~-~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|              +++|..++++.+++       .++|+++.+|+.+. +| . .|+|++..+.|.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~  117 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CCCEEEEecCccHHHHHHHHHCCCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence            4579999999996              45677556665543       36899999999875 56 3 599998765444


Q ss_pred             CC-hHHHHHHHHHHHHhCCCCCEEEE
Q 043063          216 WT-DDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       216 ~~-d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      +. ......+|+.+.+.|+|||+++.
T Consensus       118 l~~~~~~~~~l~~~~~~LkpgG~li~  143 (328)
T 1g6q_1          118 LLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence            32 23345899999999999999874

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.20  E-value=1.8e-06  Score=73.03  Aligned_cols=78  Identities=19%  Similarity=0.207  Sum_probs=58.0

Q ss_pred             cceEEeecCCce-------------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc--C---Cc--ccEeeHhhh
Q 043063          161 VKRLVDVGGSAG-------------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS--I---PA--ADAIFMKWV  212 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~--~---p~--~D~v~~~~v  212 (301)
                      ..+|||||||+|                   +.+|. |.+++.++. .++|+++.+|..+.  +   +.  .|+|++...
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~  161 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA  161 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence            469999999995                   23465 666665543 36899999999873  2   22  499887554


Q ss_pred             hccCChHHHHHHHHHHHH-hCCCCCEEEEecc
Q 043063          213 LTTWTDDECKLIMENCYK-AIPAGGKLIACEP  243 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~-aL~pgg~lli~e~  243 (301)
                       |.    +...+|+++++ .|+|||+|++.+.
T Consensus       162 -~~----~~~~~l~~~~r~~LkpGG~lv~~d~  188 (236)
T 2bm8_A          162 -HA----NTFNIMKWAVDHLLEEGDYFIIEDM  188 (236)
T ss_dssp             -CS----SHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred             -hH----hHHHHHHHHHHhhCCCCCEEEEEeC
Confidence             42    34689999997 9999999999876

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.19  E-value=3.2e-07  Score=74.13  Aligned_cols=85  Identities=7%  Similarity=-0.051  Sum_probs=61.5

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC------Cc-ccEeeH
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI------PA-ADAIFM  209 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~------p~-~D~v~~  209 (301)
                      ....+|||+|||+|              +++|. |.+++.+++       .++++++.+|+.+..      +. .|+|++
T Consensus        43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~  122 (187)
T 2fhp_A           43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL  122 (187)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred             cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence            35679999999996              56787 777777654       258999999987642      23 499999


Q ss_pred             hhhhccCChHHHHHHHHHH--HHhCCCCCEEEEeccccC
Q 043063          210 KWVLTTWTDDECKLIMENC--YKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~--~~aL~pgg~lli~e~~~~  246 (301)
                      ...+|....+   .+++.+  .+.|+|||++++......
T Consensus       123 ~~~~~~~~~~---~~~~~l~~~~~L~~gG~l~~~~~~~~  158 (187)
T 2fhp_A          123 DPPYAKQEIV---SQLEKMLERQLLTNEAVIVCETDKTV  158 (187)
T ss_dssp             CCCGGGCCHH---HHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCCCCchhHH---HHHHHHHHhcccCCCCEEEEEeCCcc
Confidence            8776643333   455555  778999999988765443

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.19  E-value=6.1e-07  Score=73.87  Aligned_cols=77  Identities=14%  Similarity=0.196  Sum_probs=58.2

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhhhhccC
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTW  216 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~  216 (301)
                      ..+|||||||+|               +++|. |.+++.+++      ..++++..+|+.+..+.  .|+|++..    +
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~----~  141 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA----F  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC----S
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec----c
Confidence            579999999996               46787 677666543      24599999999875432  59999753    2


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .+  ...+++++++.|+|||++++...
T Consensus       142 ~~--~~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          142 AS--LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             SS--HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             CC--HHHHHHHHHHhcCCCcEEEEEeC
Confidence            33  35899999999999999998743

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.19  E-value=3.5e-07  Score=72.73  Aligned_cols=82  Identities=17%  Similarity=0.151  Sum_probs=59.1

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCC----C-ceeEEeCCCCccCC-------cccEeeHhhhh
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI----P-GVTHIGGDMFKSIP-------AADAIFMKWVL  213 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~----~-ri~~~~gd~~~~~p-------~~D~v~~~~vl  213 (301)
                      ...+|||+|||+|             +++|. |.+++.+++.    . +++++.+|+.+..+       ..|+|++...+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~  120 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPY  120 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCT
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCC
Confidence            4578999999996             56787 7777776541    1 89999999876422       35999998877


Q ss_pred             ccCChHHHHHHHHHHH--HhCCCCCEEEEecccc
Q 043063          214 TTWTDDECKLIMENCY--KAIPAGGKLIACEPVL  245 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~--~aL~pgg~lli~e~~~  245 (301)
                      | -..+   .+++.+.  +.|+|||++++.....
T Consensus       121 ~-~~~~---~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          121 A-MDLA---ALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             T-SCTT---HHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             c-hhHH---HHHHHHHhhcccCCCcEEEEEeCCc
Confidence            6 2222   4445554  9999999988866543

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.19  E-value=2.1e-06  Score=72.62  Aligned_cols=87  Identities=20%  Similarity=0.228  Sum_probs=65.1

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-Cc--cc
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-PA--AD  205 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-p~--~D  205 (301)
                      .++...+ .....+|||+|||+|             +++|. +..++.+++       .+++++..+|+.+.. +.  .|
T Consensus        82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  160 (248)
T 2yvl_A           82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFH  160 (248)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBS
T ss_pred             HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCccc
Confidence            3444553 666789999999996             46786 677666553       268999999998765 54  59


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +|++     +.++.  ..+|+++.+.|+|||++++....
T Consensus       161 ~v~~-----~~~~~--~~~l~~~~~~L~~gG~l~~~~~~  192 (248)
T 2yvl_A          161 AAFV-----DVREP--WHYLEKVHKSLMEGAPVGFLLPT  192 (248)
T ss_dssp             EEEE-----CSSCG--GGGHHHHHHHBCTTCEEEEEESS
T ss_pred             EEEE-----CCcCH--HHHHHHHHHHcCCCCEEEEEeCC
Confidence            9986     33443  37899999999999999998764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.18  E-value=6.2e-07  Score=80.99  Aligned_cols=80  Identities=13%  Similarity=0.153  Sum_probs=60.6

Q ss_pred             CcceEEeecCC------ce----------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CC-------c-ccEe
Q 043063          160 GVKRLVDVGGS------AG----------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IP-------A-ADAI  207 (301)
Q Consensus       160 ~~~~vlDvGgG------~g----------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p-------~-~D~v  207 (301)
                      +..+|||||||      +|                +++|+ |.+.   ...++|+|+.+|+.+. ++       . .|+|
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlV  292 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---VDELRIRTIQGDQNDAEFLDRIARRYGPFDIV  292 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---GCBTTEEEEECCTTCHHHHHHHHHHHCCEEEE
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---hcCCCcEEEEecccccchhhhhhcccCCccEE
Confidence            45799999999      42                56787 5543   2357999999999864 33       2 4999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      ++. ..|++++  ..+.|+++++.|+|||++++.|...
T Consensus       293 isd-gsH~~~d--~~~aL~el~rvLKPGGvlVi~Dl~t  327 (419)
T 3sso_A          293 IDD-GSHINAH--VRTSFAALFPHVRPGGLYVIEDMWT  327 (419)
T ss_dssp             EEC-SCCCHHH--HHHHHHHHGGGEEEEEEEEEECGGG
T ss_pred             EEC-Ccccchh--HHHHHHHHHHhcCCCeEEEEEeccc
Confidence            875 4566544  4689999999999999999988763

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.18  E-value=1.1e-06  Score=75.48  Aligned_cols=85  Identities=16%  Similarity=0.216  Sum_probs=59.0

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc--------CCc
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS--------IPA  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~--------~p~  203 (301)
                      .....+|||+|||+|               +++|+ |.+++.+++          .+|++++.+|+.+.        ++.
T Consensus        34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            445679999999996               46787 666655432          13799999999865        222


Q ss_pred             --ccEeeHhhhhc----------------cCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          204 --ADAIFMKWVLT----------------TWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       204 --~D~v~~~~vlh----------------~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                        .|+|++.-.++                +........+++.+.+.|+|||+++++-
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~  170 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS  170 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence              49999862221                1222235689999999999999988754

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.18  E-value=5.8e-07  Score=75.07  Aligned_cols=82  Identities=18%  Similarity=0.223  Sum_probs=61.3

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC---------CcccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI---------PAADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~---------p~~D~  206 (301)
                      +..+|||||||+|                +.+|. +.+++.+++       .++|+++.+|+.+.+         ...|+
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~  143 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL  143 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence            4579999999995                45787 677666543       367999999986542         22599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++..     +......+++++.+.|+|||+|++.+...+
T Consensus       144 v~~~~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  178 (225)
T 3tr6_A          144 IYIDA-----DKANTDLYYEESLKLLREGGLIAVDNVLRR  178 (225)
T ss_dssp             EEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             EEECC-----CHHHHHHHHHHHHHhcCCCcEEEEeCCCcC
Confidence            98433     334456899999999999999998887654

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.18  E-value=2.6e-07  Score=74.21  Aligned_cols=85  Identities=9%  Similarity=0.049  Sum_probs=60.9

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CCc-ccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IPA-ADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p~-~D~v~~~~v  212 (301)
                      ....+|||+|||+|              +++|. +.+++.+++       .++++++.+|+.+.   .+. .|+|++...
T Consensus        30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~  109 (177)
T 2esr_A           30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP  109 (177)
T ss_dssp             CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence            35679999999996              56787 777776653       15799999998763   223 599998765


Q ss_pred             hccCChHHHHHHHHHHH--HhCCCCCEEEEeccccC
Q 043063          213 LTTWTDDECKLIMENCY--KAIPAGGKLIACEPVLP  246 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~--~aL~pgg~lli~e~~~~  246 (301)
                      +|.   .....+++.+.  +.|+|||++++......
T Consensus       110 ~~~---~~~~~~~~~l~~~~~L~~gG~l~~~~~~~~  142 (177)
T 2esr_A          110 YAK---ETIVATIEALAAKNLLSEQVMVVCETDKTV  142 (177)
T ss_dssp             SHH---HHHHHHHHHHHHTTCEEEEEEEEEEEETTC
T ss_pred             CCc---chHHHHHHHHHhCCCcCCCcEEEEEECCcc
Confidence            542   22346666666  89999999988765443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=98.18  E-value=5e-07  Score=76.03  Aligned_cols=82  Identities=13%  Similarity=0.283  Sum_probs=62.2

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C--Cc-ccEeeHh
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I--PA-ADAIFMK  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~--p~-~D~v~~~  210 (301)
                      +..+|||||||+|               +.+|. |..++.+++       .++|+++.+|+.+.   .  +. .|+|++.
T Consensus        54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~  133 (233)
T 2gpy_A           54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFID  133 (233)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEEC
Confidence            4579999999996               45687 777766653       25899999999864   2  23 5999987


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      ...+     ....+|+++.+.|+|||++++.+....
T Consensus       134 ~~~~-----~~~~~l~~~~~~L~pgG~lv~~~~~~~  164 (233)
T 2gpy_A          134 AAKG-----QYRRFFDMYSPMVRPGGLILSDNVLFR  164 (233)
T ss_dssp             GGGS-----CHHHHHHHHGGGEEEEEEEEEETTTC-
T ss_pred             CCHH-----HHHHHHHHHHHHcCCCeEEEEEcCCcC
Confidence            7653     346899999999999999998765443

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.16  E-value=3.2e-06  Score=69.15  Aligned_cols=89  Identities=24%  Similarity=0.211  Sum_probs=58.9

Q ss_pred             hhhcCCCCCCcceEEeecCCcee-----------------eeehhHHHhhCCCCCceeEEeCCCCccC------------
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAGI-----------------NFDLPEVVAEAPSIPGVTHIGGDMFKSI------------  201 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g~-----------------~~Dlp~v~~~a~~~~ri~~~~gd~~~~~------------  201 (301)
                      +.+.+..+.+..+|||||||+|.                 ++|+.++    ...++++++.+|+.+..            
T Consensus        13 ~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~----~~~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           13 LDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIM----DPIPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             HHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCC----CCCTTCEEEECCTTTTSSCCC--------
T ss_pred             HHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCcc----CCCCCceEEEccccchhhhhhcccccccc
Confidence            33444324566899999999962                 2344221    12367999999987642            


Q ss_pred             --------------Cc--ccEeeHhhhhccCC----hHH-----HHHHHHHHHHhCCCCCEEEEecc
Q 043063          202 --------------PA--ADAIFMKWVLTTWT----DDE-----CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       202 --------------p~--~D~v~~~~vlh~~~----d~~-----~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                                    +.  .|+|++...+|...    |..     ...+|+.+++.|+|||++++...
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  155 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY  155 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence                          42  49999887776532    211     12489999999999999987443

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=98.16  E-value=1.7e-06  Score=76.51  Aligned_cols=88  Identities=18%  Similarity=0.247  Sum_probs=62.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc--CCc-ccEeeHh-
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS--IPA-ADAIFMK-  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~--~p~-~D~v~~~-  210 (301)
                      .....+|||+|||+|                +.+|. +..++.+++      ..+++++.+|+.+.  .+. .|+|++. 
T Consensus       116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~Il~d~  195 (315)
T 1ixk_A          116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA  195 (315)
T ss_dssp             CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCEEEEeC
Confidence            556789999999995                45687 666666543      25799999998764  232 5999872 


Q ss_pred             -----hhhcc-------CChHH-------HHHHHHHHHHhCCCCCEEEEecccc
Q 043063          211 -----WVLTT-------WTDDE-------CKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       211 -----~vlh~-------~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                           .+++.       |+.++       ..++|+++.+.|+|||+|++..+..
T Consensus       196 Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~  249 (315)
T 1ixk_A          196 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSL  249 (315)
T ss_dssp             CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCC
T ss_pred             CCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence                 33433       23222       1589999999999999999877644

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.16  E-value=2.1e-06  Score=75.46  Aligned_cols=84  Identities=14%  Similarity=0.148  Sum_probs=56.9

Q ss_pred             CCCcceEEeecCCce------------eeeeh-----hHHHhhCC--CC--CceeEEeC-CCCccCC-cccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSAG------------INFDL-----PEVVAEAP--SI--PGVTHIGG-DMFKSIP-AADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g------------~~~Dl-----p~v~~~a~--~~--~ri~~~~g-d~~~~~p-~~D~v~~~~vlh  214 (301)
                      +.+..+|||||||+|            +.+|.     +..++..+  ..  ++|+++.+ |+...-+ ..|+|++...++
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~~~~  159 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDIGES  159 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhcCCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECCccc
Confidence            556789999999996            35676     43333222  12  67999999 8875422 359999866543


Q ss_pred             ---cCChHH-HHHHHHHHHHhCCCCCEEEEe
Q 043063          215 ---TWTDDE-CKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       215 ---~~~d~~-~~~iL~~~~~aL~pgg~lli~  241 (301)
                         ...|.. ...+|+.+++.|+|||.+++.
T Consensus       160 ~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~k  190 (305)
T 2p41_A          160 SPNPTVEAGRTLRVLNLVENWLSNNTQFCVK  190 (305)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred             cCcchhhHHHHHHHHHHHHHHhCCCCEEEEE
Confidence               222322 236899999999999988773

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.15  E-value=1e-06  Score=76.12  Aligned_cols=88  Identities=17%  Similarity=0.279  Sum_probs=65.5

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC---------CCceeEEeCCCCcc-C
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS---------IPGVTHIGGDMFKS-I  201 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~---------~~ri~~~~gd~~~~-~  201 (301)
                      ..++..++ ..+..+|||+|||+|                +.+|. |.+++.+++         .++++++.+|+.+. +
T Consensus        89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~  167 (280)
T 1i9g_A           89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL  167 (280)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred             HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence            34555664 677789999999995                45687 776665542         35899999999775 4


Q ss_pred             Cc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          202 PA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       202 p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +.  .|+|++     +.++..  .+|+++.++|+|||++++..+.
T Consensus       168 ~~~~~D~v~~-----~~~~~~--~~l~~~~~~L~pgG~l~~~~~~  205 (280)
T 1i9g_A          168 PDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVAT  205 (280)
T ss_dssp             CTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESS
T ss_pred             CCCceeEEEE-----CCcCHH--HHHHHHHHhCCCCCEEEEEeCC
Confidence            43  499987     344432  7899999999999999998763

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.14  E-value=1.8e-06  Score=74.99  Aligned_cols=81  Identities=12%  Similarity=0.167  Sum_probs=58.5

Q ss_pred             CCcceEEeecCCce--------------eeeeh--hHHHhhCCC---------C-------CceeEEeCCCCc---cC--
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL--PEVVAEAPS---------I-------PGVTHIGGDMFK---SI--  201 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl--p~v~~~a~~---------~-------~ri~~~~gd~~~---~~--  201 (301)
                      ....+|||||||+|              +.+|.  |.+++.+++         .       ++|++...|..+   ++  
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            34579999999995              46788  566655432         1       378888655433   22  


Q ss_pred             --C-c-ccEeeHhhhhccCChHHHHHHHHHHHHhCC---C--CCEEEEe
Q 043063          202 --P-A-ADAIFMKWVLTTWTDDECKLIMENCYKAIP---A--GGKLIAC  241 (301)
Q Consensus       202 --p-~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~---p--gg~lli~  241 (301)
                        + . .|+|+++.++|+.++  ...+++.+.+.|+   |  ||+++++
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~~--~~~ll~~l~~~Lk~~~p~~gG~l~v~  204 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQA--HDALLRSVKMLLALPANDPTAVALVT  204 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGGG--HHHHHHHHHHHBCCTTTCTTCEEEEE
T ss_pred             hccCCCCCEEEEeCcccChHH--HHHHHHHHHHHhcccCCCCCCEEEEE
Confidence              2 2 599999999987655  4689999999999   9  9987764

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.14  E-value=1e-06  Score=74.06  Aligned_cols=83  Identities=10%  Similarity=0.075  Sum_probs=66.3

Q ss_pred             CCcceEEeecCCce------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCCh
Q 043063          159 KGVKRLVDVGGSAG------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTD  218 (301)
Q Consensus       159 ~~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d  218 (301)
                      ....+|||||||+|            +.+|+ +.+++.+++     ..+.++...|+... .|. +|++++.-++|++.+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh~LE~  183 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYERGIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLPLLER  183 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHTTCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHHHHHH
T ss_pred             CCCCeEEEecCCccHHHHHhccCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHHHhhh
Confidence            45789999999995            56788 777776654     36788999999876 444 599999999999888


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEec
Q 043063          219 DECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ++-...+ ++.++|++++.++..+
T Consensus       184 q~~~~~~-~ll~aL~~~~vvVsfP  206 (253)
T 3frh_A          184 EQAGSAM-ALLQSLNTPRMAVSFP  206 (253)
T ss_dssp             HSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred             hchhhHH-HHHHHhcCCCEEEEcC
Confidence            7655556 8888999998888777

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.14  E-value=6.7e-07  Score=75.99  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=61.0

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C-----Cc-ccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I-----PA-ADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~-----p~-~D~  206 (301)
                      +..+|||||||+|                +.+|. |.+++.+++       .++|+++.+|..+.   .     +. .|+
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~  139 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF  139 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence            4579999999996                45676 666655543       36999999998764   2     23 599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++...     ......+|+++.+.|+|||.|++.+....
T Consensus       140 V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~~  174 (242)
T 3r3h_A          140 IFIDAD-----KTNYLNYYELALKLVTPKGLIAIDNIFWD  174 (242)
T ss_dssp             EEEESC-----GGGHHHHHHHHHHHEEEEEEEEEECSSSS
T ss_pred             EEEcCC-----hHHhHHHHHHHHHhcCCCeEEEEECCccC
Confidence            987542     33456889999999999999999877654

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.13  E-value=6.5e-07  Score=78.01  Aligned_cols=89  Identities=21%  Similarity=0.327  Sum_probs=59.6

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~  206 (301)
                      ..+++.++ ..+..+|||||||+|             +++|. +.+++.+++       .++++++.+|+.+. +|..|+
T Consensus        18 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~fD~   96 (285)
T 1zq9_A           18 NSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFDT   96 (285)
T ss_dssp             HHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCSE
T ss_pred             HHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchhhcE
Confidence            34445554 666789999999996             56787 777666543       15899999999874 666798


Q ss_pred             eeHhhhhccCChHHHHHHHH--------------HH--HHhCCCCCEEE
Q 043063          207 IFMKWVLTTWTDDECKLIME--------------NC--YKAIPAGGKLI  239 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~--------------~~--~~aL~pgg~ll  239 (301)
                      |++. ..++|+.+...++|.              ++  +.+++|||+++
T Consensus        97 vv~n-lpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkPGg~~y  144 (285)
T 1zq9_A           97 CVAN-LPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKPGDKLY  144 (285)
T ss_dssp             EEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCTTCTTC
T ss_pred             EEEe-cCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCCCCccc
Confidence            8874 333444444444543              22  35899998653

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.09  E-value=3.8e-06  Score=72.71  Aligned_cols=86  Identities=10%  Similarity=0.018  Sum_probs=58.8

Q ss_pred             CCCcceEEeecCCce------------eeeehhHHHhhCCC--CC------ceeEE--eCCCCccCCc-ccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSAG------------INFDLPEVVAEAPS--IP------GVTHI--GGDMFKSIPA-ADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g------------~~~Dlp~v~~~a~~--~~------ri~~~--~gd~~~~~p~-~D~v~~~~vlh  214 (301)
                      +.+..+|||||||+|            +.+|+.+++..+++  ..      +|+++  .+|+.+.-+. .|+|++... +
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~~-~  158 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQPNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDIG-E  158 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECCC-C
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHcCCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECCC-c
Confidence            556789999999996            56788445433322  12      78999  9998753223 599998766 4


Q ss_pred             cCChH----H-HHHHHHHHHHhCCCCC--EEEEeccc
Q 043063          215 TWTDD----E-CKLIMENCYKAIPAGG--KLIACEPV  244 (301)
Q Consensus       215 ~~~d~----~-~~~iL~~~~~aL~pgg--~lli~e~~  244 (301)
                      ..+..    . ..++|+.+.+.|+|||  .+++....
T Consensus       159 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          159 SNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             CCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            33221    1 2248999999999999  88875443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.09  E-value=3.1e-06  Score=72.83  Aligned_cols=86  Identities=14%  Similarity=0.042  Sum_probs=59.1

Q ss_pred             CCCcceEEeecCCce------------eeeehhHHHhhCCC--CC------ceeEE--eCCCCccCCc-ccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSAG------------INFDLPEVVAEAPS--IP------GVTHI--GGDMFKSIPA-ADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g------------~~~Dlp~v~~~a~~--~~------ri~~~--~gd~~~~~p~-~D~v~~~~vlh  214 (301)
                      +.+..+|||||||+|            +.+|+.+++..+++  ..      +|.++  .+|+.+.-+. .|+|++... |
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~V~sd~~-~  150 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASRPHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVERTDVIMCDVG-E  150 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCC-C
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHcCcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCCCcEEEEeCc-c
Confidence            556789999999996            56788445433322  12      78999  8998753223 599998766 4


Q ss_pred             cCChH----H-HHHHHHHHHHhCCCCC--EEEEeccc
Q 043063          215 TWTDD----E-CKLIMENCYKAIPAGG--KLIACEPV  244 (301)
Q Consensus       215 ~~~d~----~-~~~iL~~~~~aL~pgg--~lli~e~~  244 (301)
                      ..++.    . ...+|+.+++.|+|||  .+++....
T Consensus       151 ~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          151 SSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             cCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            33221    1 2248999999999999  88885544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.08  E-value=1.2e-06  Score=78.94  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=57.7

Q ss_pred             cceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCC
Q 043063          161 VKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWT  217 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~  217 (301)
                      ..+|||||||+|              +.+|..++++.|++       .++|+++.+|+.+. +|. .|+|+.-.+-+.+.
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l~  163 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGLL  163 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTBT
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeeccccccc
Confidence            468999999996              34676555555442       47999999999775 776 69998744433322


Q ss_pred             -hHHHHHHHHHHHHhCCCCCEEEE
Q 043063          218 -DDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       218 -d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                       ......++....+.|+|||+++-
T Consensus       164 ~e~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          164 HESMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             TTCSHHHHHHHHHHHEEEEEEEES
T ss_pred             ccchhhhHHHHHHhhCCCCceECC
Confidence             23456888888899999998763

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.08  E-value=8.5e-07  Score=74.29  Aligned_cols=81  Identities=15%  Similarity=0.240  Sum_probs=59.9

Q ss_pred             cceEEeecCCce----------------eeeeh-hHHHhhCCC-------C-CceeEEeCCCCcc---C-Cc-ccEeeHh
Q 043063          161 VKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------I-PGVTHIGGDMFKS---I-PA-ADAIFMK  210 (301)
Q Consensus       161 ~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~---~-p~-~D~v~~~  210 (301)
                      ..+|||||||+|                +.+|. |.+++.+++       . +||+++.+|..+.   + +. .|+|++.
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d  136 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQ  136 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEc
Confidence            349999999995                46787 777766643       2 5899999998764   3 22 4999875


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .     +......+++++.+.|+|||.|++.+....
T Consensus       137 ~-----~~~~~~~~l~~~~~~LkpGG~lv~dn~~~~  167 (221)
T 3dr5_A          137 V-----SPMDLKALVDAAWPLLRRGGALVLADALLD  167 (221)
T ss_dssp             C-----CTTTHHHHHHHHHHHEEEEEEEEETTTTGG
T ss_pred             C-----cHHHHHHHHHHHHHHcCCCcEEEEeCCCCC
Confidence            3     223345789999999999999998776653

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.08  E-value=8.1e-07  Score=73.49  Aligned_cols=82  Identities=21%  Similarity=0.206  Sum_probs=60.6

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC--c-ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP--A-ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p--~-~D~v~~~~v  212 (301)
                      +..+|||||||+|                +.+|. +.+++.+++       .++++++.+|..+..|  . .|+|++.. 
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~-  134 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDC-  134 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEET-
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcC-
Confidence            4579999999995                45687 777776653       2589999999875322  2 69888752 


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                          +......+++++++.|+|||++++.+....
T Consensus       135 ----~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  164 (210)
T 3c3p_A          135 ----DVFNGADVLERMNRCLAKNALLIAVNALRR  164 (210)
T ss_dssp             ----TTSCHHHHHHHHGGGEEEEEEEEEESSSSC
T ss_pred             ----ChhhhHHHHHHHHHhcCCCeEEEEECcccc
Confidence                223346899999999999999988776543

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.08  E-value=1.3e-06  Score=76.94  Aligned_cols=82  Identities=22%  Similarity=0.270  Sum_probs=61.3

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-c-ccEeeHhhhhc
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-A-ADAIFMKWVLT  214 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~-~D~v~~~~vlh  214 (301)
                      .+|||||||.|               +++|+ |.+++.+++      .+|++++.+|..+.   .+ . .|+|++....|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~  170 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG  170 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence            49999999996               46787 888887754      36999999998764   33 2 59999865444


Q ss_pred             cCChHH--HHHHHHHHHHhCCCCCEEEEecc
Q 043063          215 TWTDDE--CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       215 ~~~d~~--~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ......  ...+++.++++|+|||.+++.-.
T Consensus       171 ~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          171 AITPQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             SCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             cccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            332222  25899999999999999887764

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=98.07  E-value=2.1e-06  Score=73.73  Aligned_cols=78  Identities=21%  Similarity=0.316  Sum_probs=59.1

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCCh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d  218 (301)
                      .+..+|||||||+|               +++|. +.+++.+++ ..++.+..+|+... ++.  .|+|++..+.     
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~-----  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP-----  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence            35679999999995               46787 777776654 36789999998653 443  4999975442     


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                          ..++++++.|+|||++++..+..
T Consensus       159 ----~~l~~~~~~L~pgG~l~~~~~~~  181 (269)
T 1p91_A          159 ----CKAEELARVVKPGGWVITATPGP  181 (269)
T ss_dssp             ----CCHHHHHHHEEEEEEEEEEEECT
T ss_pred             ----hhHHHHHHhcCCCcEEEEEEcCH
Confidence                35899999999999999987643

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.06  E-value=4.1e-06  Score=72.88  Aligned_cols=80  Identities=16%  Similarity=0.241  Sum_probs=58.4

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-cc---cEeeHh---
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-AA---DAIFMK---  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-~~---D~v~~~---  210 (301)
                      ...+|||||||+|              +.+|. +.+++.+++       .+|++|+.+|+++.++ ..   |+|++.   
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPPy  202 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY  202 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCCC
Confidence            3468999999996              46787 777776653       2479999999998654 46   999885   


Q ss_pred             ---------hhhccCCh------HHHHHHHHHHH-HhCCCCCEEEE
Q 043063          211 ---------WVLTTWTD------DECKLIMENCY-KAIPAGGKLIA  240 (301)
Q Consensus       211 ---------~vlh~~~d------~~~~~iL~~~~-~aL~pgg~lli  240 (301)
                               .+. +.+.      .+...+++++. +.|+|||++++
T Consensus       203 i~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          203 VKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLM  247 (284)
T ss_dssp             BCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEE
T ss_pred             CCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEE
Confidence                     222 1221      11237899999 99999999886

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.06  E-value=9.1e-07  Score=74.80  Aligned_cols=82  Identities=21%  Similarity=0.285  Sum_probs=60.5

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-------------
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-------------  202 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-------------  202 (301)
                      +..+|||||||+|                +.+|. |.+++.+++       .++|+++.+|+.+..+             
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~  139 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWAS  139 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGT
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccc
Confidence            4679999999995                45676 777666553       2579999999865321             


Q ss_pred             ------c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          203 ------A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       203 ------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                            . .|+|++...     .+....+++++.+.|+|||++++.+...+
T Consensus       140 ~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  185 (239)
T 2hnk_A          140 DFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKPGGLLIADNVLWD  185 (239)
T ss_dssp             TTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEEEEEEEEECSSGG
T ss_pred             cccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCCCeEEEEEccccC
Confidence                  3 599987643     33456889999999999999998775543

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.04  E-value=1.4e-06  Score=75.80  Aligned_cols=84  Identities=20%  Similarity=0.171  Sum_probs=61.2

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~  208 (301)
                      ....+|||||||+|               +++|+ |.+++.+++          .+|++++.+|..+..   +. .|+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            35689999999995               46787 777776542          368999999987642   33 59999


Q ss_pred             HhhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063          209 MKWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       209 ~~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +....+..+....  ..++++++++|+|||++++..
T Consensus       157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  192 (283)
T 2i7c_A          157 VDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  192 (283)
T ss_dssp             EECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence            8544333233222  589999999999999998874

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=98.03  E-value=4.7e-08  Score=82.75  Aligned_cols=79  Identities=20%  Similarity=0.150  Sum_probs=61.6

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCC-------CceeEEeCCCCccCCc--ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-------PGVTHIGGDMFKSIPA--ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-------~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~  216 (301)
                      ...+|||+|||+|             +++|+ |.+++.+++.       ++++++.+|+.+..+.  .|+|++...+|+.
T Consensus        78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~  157 (241)
T 3gdh_A           78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWGGP  157 (241)
T ss_dssp             CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCSSG
T ss_pred             CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcCCc
Confidence            4679999999996             56798 7777776541       5899999999765333  5999999999887


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      ++..  ..+.+++++|+|||.+++
T Consensus       158 ~~~~--~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          158 DYAT--AETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             GGGG--SSSBCTTTSCSSCHHHHH
T ss_pred             chhh--hHHHHHHhhcCCcceeHH
Confidence            7653  367788999999998544

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.02  E-value=2e-06  Score=73.21  Aligned_cols=81  Identities=15%  Similarity=0.167  Sum_probs=59.8

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------Cc-cc
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PA-AD  205 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~-~D  205 (301)
                      +..+|||||||+|                +.+|. +.+++.+++       .++|+++.+|..+.   +      +. .|
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  158 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  158 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBS
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEE
Confidence            4579999999996                45677 666666543       26899999998653   2      22 49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +|++...     ......+++++.+.|+|||.|++.+...
T Consensus       159 ~V~~d~~-----~~~~~~~l~~~~~~LkpGG~lv~d~~~~  193 (247)
T 1sui_A          159 FIFVDAD-----KDNYLNYHKRLIDLVKVGGVIGYDNTLW  193 (247)
T ss_dssp             EEEECSC-----STTHHHHHHHHHHHBCTTCCEEEECTTG
T ss_pred             EEEEcCc-----hHHHHHHHHHHHHhCCCCeEEEEecCCc
Confidence            9987532     2335689999999999999998876544

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.01  E-value=9.4e-07  Score=76.58  Aligned_cols=83  Identities=22%  Similarity=0.215  Sum_probs=60.2

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~  209 (301)
                      +..+|||||||+|               +++|+ |.+++.+++          .+|++++.+|.++.+   +. .|+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            4679999999996               46787 777776542          369999999987642   22 599998


Q ss_pred             hhhhccCChHH--HHHHHHHHHHhCCCCCEEEEec
Q 043063          210 KWVLTTWTDDE--CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       210 ~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ....+..+...  ...++++++++|+|||.+++..
T Consensus       155 d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~  189 (275)
T 1iy9_A          155 DSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (275)
T ss_dssp             SCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            54433222111  2479999999999999998863

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.00  E-value=1.3e-06  Score=73.03  Aligned_cols=82  Identities=13%  Similarity=0.253  Sum_probs=60.9

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------CcccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PAADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~~D~  206 (301)
                      +..+|||||||+|                +.+|. |.+++.+++       .++++++.+|+.+.   +      ...|+
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~  148 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  148 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccE
Confidence            4679999999995                45677 666666543       26899999998653   2      23599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++..     +......+++++.+.|+|||.+++.+....
T Consensus       149 v~~d~-----~~~~~~~~l~~~~~~L~pgG~lv~~~~~~~  183 (229)
T 2avd_A          149 AVVDA-----DKENCSAYYERCLQLLRPGGILAVLRVLWR  183 (229)
T ss_dssp             EEECS-----CSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             EEECC-----CHHHHHHHHHHHHHHcCCCeEEEEECCCcC
Confidence            88743     233456899999999999999998776543

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.00  E-value=2.2e-06  Score=74.41  Aligned_cols=83  Identities=19%  Similarity=0.231  Sum_probs=58.2

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCC----------------CCCceeEEeCCCCccC--Cc-cc
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAP----------------SIPGVTHIGGDMFKSI--PA-AD  205 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~----------------~~~ri~~~~gd~~~~~--p~-~D  205 (301)
                      ...+|||||||+|              +++|+ |.+++.++                ..+|++++.+|..+.+  +. .|
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~fD  154 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD  154 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCee
Confidence            4579999999996              46687 77766543                2468999999986532  33 59


Q ss_pred             EeeHhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEec
Q 043063          206 AIFMKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +|++....|..+...  ...+++++++.|+|||++++..
T Consensus       155 ~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~  193 (281)
T 1mjf_A          155 VIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  193 (281)
T ss_dssp             EEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            999755433222222  2588999999999999998864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=97.99  E-value=1.4e-06  Score=71.75  Aligned_cols=82  Identities=6%  Similarity=0.025  Sum_probs=59.6

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC--C-c-ccEeeHhhhhcc
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI--P-A-ADAIFMKWVLTT  215 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~--p-~-~D~v~~~~vlh~  215 (301)
                      ..+|||+|||+|              +.+|. |.+++.+++      .++++++.+|+.+..  + . .|+|++...+| 
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~-  133 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR-  133 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS-
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC-
Confidence            468999999996              46787 777777654      258999999987632  2 2 59999877655 


Q ss_pred             CChHHHHHHHHHHHHh--CCCCCEEEEecccc
Q 043063          216 WTDDECKLIMENCYKA--IPAGGKLIACEPVL  245 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~a--L~pgg~lli~e~~~  245 (301)
                      ..+  ...+++.+.+.  |+|||++++.....
T Consensus       134 ~~~--~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          134 RGL--LEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             TTT--HHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             CCc--HHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            332  34677777664  99999988766543

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=97.99  E-value=2.1e-06  Score=75.84  Aligned_cols=83  Identities=18%  Similarity=0.169  Sum_probs=61.2

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSI---PA-ADAIF  208 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~---p~-~D~v~  208 (301)
                      +..+|||||||+|               +++|+ |.+++.+++           .+|++++.+|..+.+   +. .|+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            4579999999995               46787 777766542           368999999987642   23 59999


Q ss_pred             Hhhhhcc---CChHH--HHHHHHHHHHhCCCCCEEEEec
Q 043063          209 MKWVLTT---WTDDE--CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       209 ~~~vlh~---~~d~~--~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +....|.   -+...  ...++++++++|+|||++++..
T Consensus       157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  195 (314)
T 1uir_A          157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (314)
T ss_dssp             EECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             ECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence            9766544   11111  3589999999999999998874

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=97.97  E-value=2.4e-06  Score=76.08  Aligned_cols=87  Identities=20%  Similarity=0.273  Sum_probs=61.8

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----------------CCceeEEeC
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----------------IPGVTHIGG  195 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----------------~~ri~~~~g  195 (301)
                      .++..++ .....+|||||||+|                +.+|. |..++.+++                 .+++++..+
T Consensus        96 ~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~  174 (336)
T 2b25_A           96 MILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHK  174 (336)
T ss_dssp             HHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEES
T ss_pred             HHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEEC
Confidence            3445554 667789999999995                45687 666666543                 258999999


Q ss_pred             CCCcc---CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          196 DMFKS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       196 d~~~~---~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      |+.+.   ++.  .|+|++.     .++.  ..+++.+++.|+|||++++....
T Consensus       175 d~~~~~~~~~~~~fD~V~~~-----~~~~--~~~l~~~~~~LkpgG~lv~~~~~  221 (336)
T 2b25_A          175 DISGATEDIKSLTFDAVALD-----MLNP--HVTLPVFYPHLKHGGVCAVYVVN  221 (336)
T ss_dssp             CTTCCC-------EEEEEEC-----SSST--TTTHHHHGGGEEEEEEEEEEESS
T ss_pred             ChHHcccccCCCCeeEEEEC-----CCCH--HHHHHHHHHhcCCCcEEEEEeCC
Confidence            99874   343  4999873     2332  24899999999999999987763

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=97.97  E-value=9.3e-06  Score=68.71  Aligned_cols=80  Identities=18%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC-c--ccEeeHhhh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP-A--ADAIFMKWV  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p-~--~D~v~~~~v  212 (301)
                      ++..+|+|||||+|               +.+|. |..++.|++       .+||++..+|.++.++ .  .|+|++..+
T Consensus        20 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Iviagm   99 (244)
T 3gnl_A           20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGM   99 (244)
T ss_dssp             CSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEE
T ss_pred             CCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCC
Confidence            45689999999995               45687 777766654       3689999999998743 2  599887543


Q ss_pred             hccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          213 LTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       213 lh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                          .-+-...||....+.|+++++|++.-
T Consensus       100 ----Gg~lI~~IL~~~~~~L~~~~~lIlq~  125 (244)
T 3gnl_A          100 ----GGTLIRTILEEGAAKLAGVTKLILQP  125 (244)
T ss_dssp             ----CHHHHHHHHHHTGGGGTTCCEEEEEE
T ss_pred             ----chHHHHHHHHHHHHHhCCCCEEEEEc
Confidence                34456789999999999988888764

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=97.95  E-value=3.8e-06  Score=68.80  Aligned_cols=73  Identities=19%  Similarity=0.375  Sum_probs=52.7

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC-CceeEEeCCCCccCCc-ccEeeHhhhhccCChHHH
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI-PGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~-~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d~~~  221 (301)
                      ....+|||+|||+|              +++|. |.+++.+++. .+++++.+|+.+ +|. .|+|++...+|.+++...
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~~~  128 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKHSD  128 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC-------C
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCchh
Confidence            34579999999996              46787 7777776542 389999999876 454 599999999998877555


Q ss_pred             HHHHHHHHHhC
Q 043063          222 KLIMENCYKAI  232 (301)
Q Consensus       222 ~~iL~~~~~aL  232 (301)
                      .++++++.+.+
T Consensus       129 ~~~l~~~~~~~  139 (200)
T 1ne2_A          129 RAFIDKAFETS  139 (200)
T ss_dssp             HHHHHHHHHHE
T ss_pred             HHHHHHHHHhc
Confidence            68899999988

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.95  E-value=1.1e-06  Score=84.04  Aligned_cols=87  Identities=10%  Similarity=0.049  Sum_probs=66.6

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC----C--CceeEEeCCCCcc---CC-c-ccEeeHhhhhc
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----I--PGVTHIGGDMFKS---IP-A-ADAIFMKWVLT  214 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~--~ri~~~~gd~~~~---~p-~-~D~v~~~~vlh  214 (301)
                      +..+|||||||.|             +++|. +..++.|+.    .  -.|+|..++..+.   .+ . .|+|++..+||
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~e  145 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSVFH  145 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESCHH
T ss_pred             CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcchh
Confidence            4579999999996             68898 777776653    2  3699999988642   23 2 59999999999


Q ss_pred             cCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          215 TWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       215 ~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++|.+...-+.++.+.|+++++.++...+..
T Consensus       146 hv~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~  177 (569)
T 4azs_A          146 HIVHLHGIDEVKRLLSRLADVTQAVILELAVK  177 (569)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHSSEEEEECCCT
T ss_pred             cCCCHHHHHHHHHHHHHhccccceeeEEeccc
Confidence            99988766666778888998887777665443

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=97.94  E-value=1.1e-05  Score=72.44  Aligned_cols=95  Identities=15%  Similarity=0.092  Sum_probs=66.5

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~  203 (301)
                      +..++.... +.+..+|||+|||+|                +++|. |.+++.|++      .++|+|..+|+.+. .+.
T Consensus       192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~  270 (354)
T 3tma_A          192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF  270 (354)
T ss_dssp             HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence            344455554 778889999999996                45687 777777654      13899999999864 332


Q ss_pred             --ccEeeHhhhhccC-Ch-HH----HHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 --ADAIFMKWVLTTW-TD-DE----CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 --~D~v~~~~vlh~~-~d-~~----~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        .|+|++.--.+.. .+ .+    -..+++.+++.|+|||++++...
T Consensus       271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~  318 (354)
T 3tma_A          271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTL  318 (354)
T ss_dssp             CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEES
T ss_pred             CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence              4999985443321 11 11    25899999999999999998754

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=97.94  E-value=2.8e-06  Score=75.27  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=59.1

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~  209 (301)
                      ...+|||||||+|               +++|+ |.+++.+++          .+|++++.+|.++..   +. .|+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            4579999999996               46787 777766542          368999999987642   23 599997


Q ss_pred             hhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063          210 KWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       210 ~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ...-+..+....  ..++++++++|+|||++++..
T Consensus       196 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  230 (321)
T 2pt6_A          196 DSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC  230 (321)
T ss_dssp             ECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            542221111211  689999999999999998864

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.92  E-value=2.7e-06  Score=75.09  Aligned_cols=83  Identities=20%  Similarity=0.222  Sum_probs=56.2

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~  209 (301)
                      +..+|||||||+|               +++|+ |.+++.|++          .+|++++.+|..+.+   +. .|+|++
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~  187 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT  187 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence            4579999999996               46687 777766542          368999999987642   22 599997


Q ss_pred             hhhhccCChHHH--HHHHHHHHHhCCCCCEEEEec
Q 043063          210 KWVLTTWTDDEC--KLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       210 ~~vlh~~~d~~~--~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ...-|.-++...  ..++++++++|+|||++++..
T Consensus       188 d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~  222 (314)
T 2b2c_A          188 DSSDPVGPAESLFGQSYYELLRDALKEDGILSSQG  222 (314)
T ss_dssp             CCC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence            543322222221  689999999999999998865

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=97.92  E-value=2.8e-06  Score=71.85  Aligned_cols=81  Identities=17%  Similarity=0.194  Sum_probs=60.0

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------Cc-cc
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PA-AD  205 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~-~D  205 (301)
                      +..+|||||||+|                +.+|. |.+++.+++       .++|+++.+|..+.   +      +. .|
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD  149 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYD  149 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcC
Confidence            4679999999995                45687 777666543       25899999998753   2      23 49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +|++..     +......+++++.+.|+|||.+++.+...
T Consensus       150 ~I~~d~-----~~~~~~~~l~~~~~~L~pGG~lv~d~~~~  184 (237)
T 3c3y_A          150 FGFVDA-----DKPNYIKYHERLMKLVKVGGIVAYDNTLW  184 (237)
T ss_dssp             EEEECS-----CGGGHHHHHHHHHHHEEEEEEEEEECTTG
T ss_pred             EEEECC-----chHHHHHHHHHHHHhcCCCeEEEEecCCc
Confidence            998642     33445789999999999999988766544

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=97.92  E-value=1.7e-06  Score=76.05  Aligned_cols=84  Identities=15%  Similarity=0.183  Sum_probs=58.3

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~  208 (301)
                      .+..+|||||||+|               +.+|+ |.+++.+++          .+|++++.+|.++.+   +. .|+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            45689999999995               46787 777766543          468999999987532   22 59999


Q ss_pred             HhhhhccCChH--HHHHHHHHHHHhCCCCCEEEEec
Q 043063          209 MKWVLTTWTDD--ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       209 ~~~vlh~~~d~--~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +....|..+..  ....++++++++|+|||++++..
T Consensus       174 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          174 TDSSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EECC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             ECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence            85443322211  12478999999999999998865

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=97.91  E-value=2.9e-06  Score=75.53  Aligned_cols=83  Identities=20%  Similarity=0.232  Sum_probs=59.8

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v  207 (301)
                      ....+|||||||+|               +.+|+ |.+++.+++          .+|++++.+|.++.   .+.  .|+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            45689999999996               46787 777776653          36899999998753   332  5999


Q ss_pred             eHhhhhccCChHH--HHHHHHHHHHhCCCCCEEEEe
Q 043063          208 FMKWVLTTWTDDE--CKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       208 ~~~~vlh~~~d~~--~~~iL~~~~~aL~pgg~lli~  241 (301)
                      ++....+..+.+.  ...+++.++++|+|||++++.
T Consensus       199 i~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~  234 (334)
T 1xj5_A          199 IVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ  234 (334)
T ss_dssp             EECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred             EECCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence            9754321111111  368999999999999999886

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=97.90  E-value=7e-06  Score=68.49  Aligned_cols=79  Identities=23%  Similarity=0.264  Sum_probs=58.9

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC-c--ccE
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP-A--ADA  206 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p-~--~D~  206 (301)
                      ..+..+|||||||+|                +.+|. +.+++.+++           .++++++.+|+....+ .  .|+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            445679999999995                45676 666666542           2489999999875532 2  599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      |++...++++.        +++++.|+|||++++....
T Consensus       155 i~~~~~~~~~~--------~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          155 IHVGAAAPVVP--------QALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEECSBBSSCC--------HHHHHTEEEEEEEEEEESC
T ss_pred             EEECCchHHHH--------HHHHHhcCCCcEEEEEEec
Confidence            99888886654        5678899999999987653

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=97.88  E-value=2.6e-06  Score=71.72  Aligned_cols=82  Identities=21%  Similarity=0.299  Sum_probs=60.7

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---C------CcccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---I------PAADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~------p~~D~  206 (301)
                      +..+|||||||+|                +.+|. |..++.+++       .++|+++.+|..+.   +      ...|+
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~  151 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL  151 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence            4579999999995                45677 667666653       25899999997642   2      22599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++...     ......+++++.+.|+|||+|++.+...+
T Consensus       152 V~~d~~-----~~~~~~~l~~~~~~LkpgG~lv~~~~~~~  186 (232)
T 3cbg_A          152 IFIDAD-----KRNYPRYYEIGLNLLRRGGLMVIDNVLWH  186 (232)
T ss_dssp             EEECSC-----GGGHHHHHHHHHHTEEEEEEEEEECTTGG
T ss_pred             EEECCC-----HHHHHHHHHHHHHHcCCCeEEEEeCCCcC
Confidence            986532     33456899999999999999998776654

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.87  E-value=1.3e-05  Score=68.76  Aligned_cols=76  Identities=17%  Similarity=0.103  Sum_probs=58.9

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccCCcccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSIPAADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|             +.+|+ |.+++.+++          .+|++++.+|..+.....|+|++.     
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~~~fD~Ii~d-----  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDIKKYDLIFCL-----  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCCCCEEEEEES-----
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHHhhCCEEEEC-----
Confidence            4579999999995             45687 888888765          258999999987644235999875     


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      .+|..  .+++.++++|+|||.+++..
T Consensus       147 ~~dp~--~~~~~~~~~L~pgG~lv~~~  171 (262)
T 2cmg_A          147 QEPDI--HRIDGLKRMLKEDGVFISVA  171 (262)
T ss_dssp             SCCCH--HHHHHHHTTEEEEEEEEEEE
T ss_pred             CCChH--HHHHHHHHhcCCCcEEEEEc
Confidence            34443  48999999999999998863

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=97.86  E-value=3.8e-06  Score=73.54  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEeeH
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~~  209 (301)
                      ...+|||||||+|               +++|+ |.+++.+++          .+|++++.+|..+.+   +. .|+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            3579999999996               46787 777766543          368999999986532   22 599996


Q ss_pred             hhhhccCChH---HHHHHHHHHHHhCCCCCEEEEec
Q 043063          210 KWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       210 ~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ...-+.....   ...++++++++.|+|||++++..
T Consensus       170 d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~  205 (296)
T 1inl_A          170 DSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET  205 (296)
T ss_dssp             EC----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred             cCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence            4322101110   12589999999999999998863

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=97.84  E-value=1.2e-05  Score=69.63  Aligned_cols=83  Identities=16%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vl  213 (301)
                      +++..+|||+|||+|              +.+|+ |..++.+++       .++|+++.+|.++-.+.  +|.|++..  
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~--  200 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY--  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC--
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC--
Confidence            456789999999995              45687 776666543       47899999999865443  69887642  


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                         |. .+..+|..+.+.|+|||.|.+.+.+..
T Consensus       201 ---p~-~~~~~l~~a~~~lk~gG~ih~~~~~~e  229 (278)
T 3k6r_A          201 ---VV-RTHEFIPKALSIAKDGAIIHYHNTVPE  229 (278)
T ss_dssp             ---CS-SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             ---CC-cHHHHHHHHHHHcCCCCEEEEEeeecc
Confidence               21 234788889999999999988776543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=97.83  E-value=8.7e-06  Score=68.09  Aligned_cols=78  Identities=23%  Similarity=0.341  Sum_probs=58.7

Q ss_pred             CCCcceEEeecCCce---------------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCCc-
Q 043063          158 FKGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p~-  203 (301)
                      ..+..+|||||||+|                     +.+|. +.+++.+++           .++++++.+|....++. 
T Consensus        82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~  161 (227)
T 1r18_A           82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  161 (227)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence            445679999999984                     22465 666665543           25899999999876553 


Q ss_pred             --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        .|+|++...+|+++        +++.+.|+|||++++.-.
T Consensus       162 ~~fD~I~~~~~~~~~~--------~~~~~~LkpgG~lvi~~~  195 (227)
T 1r18_A          162 APYNAIHVGAAAPDTP--------TELINQLASGGRLIVPVG  195 (227)
T ss_dssp             CSEEEEEECSCBSSCC--------HHHHHTEEEEEEEEEEES
T ss_pred             CCccEEEECCchHHHH--------HHHHHHhcCCCEEEEEEe
Confidence              49999999998766        567889999999988654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=97.78  E-value=4.1e-06  Score=71.13  Aligned_cols=94  Identities=13%  Similarity=0.169  Sum_probs=59.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCCC----CceeEEeCCCCcc-CCc-ccEee
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI----PGVTHIGGDMFKS-IPA-ADAIF  208 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~----~ri~~~~gd~~~~-~p~-~D~v~  208 (301)
                      ..+++.++ .....+|||||||+|             +++|. +.+++.+++.    ++++++.+|+.+. ++. ...++
T Consensus        19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f~v   97 (245)
T 1yub_A           19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYKI   97 (245)
T ss_dssp             HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEEE
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCcEE
Confidence            34445553 566789999999996             46787 6777776652    6899999999864 442 22233


Q ss_pred             HhhhhccCChHHHH----------HHH----HHHHHhCCCCCEEEEecc
Q 043063          209 MKWVLTTWTDDECK----------LIM----ENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vlh~~~d~~~~----------~iL----~~~~~aL~pgg~lli~e~  243 (301)
                      +++.-++.+.....          .++    +.+.+.|+|||++.+...
T Consensus        98 v~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~~  146 (245)
T 1yub_A           98 VGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLLH  146 (245)
T ss_dssp             EEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHTT
T ss_pred             EEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhhe
Confidence            33322222222222          233    668889999998766554

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.74  E-value=0.00011  Score=66.16  Aligned_cols=107  Identities=12%  Similarity=0.122  Sum_probs=65.4

Q ss_pred             eEEeCCCCcc-CCcc--cEeeHhhhhccCChH------------------------------------HHHHHHHHHHHh
Q 043063          191 THIGGDMFKS-IPAA--DAIFMKWVLTTWTDD------------------------------------ECKLIMENCYKA  231 (301)
Q Consensus       191 ~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d~------------------------------------~~~~iL~~~~~a  231 (301)
                      .-++|.|+.. +|..  |+++.+.+||-+++.                                    +-..+|+..++.
T Consensus       135 ~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra~e  214 (374)
T 3b5i_A          135 AGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARAAE  214 (374)
T ss_dssp             EEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4467888876 7863  999999999977621                                    234579999999


Q ss_pred             CCCCCEEEEeccccCCCC-CC-hHHhh-h-hh----hccHHHHhh--------hhccccccCHHHHHHHHH-hCCCCceE
Q 043063          232 IPAGGKLIACEPVLPDDS-NE-SQRTR-A-LL----EGDIFVMTI--------YRAKGKHMTEQEFKQLGF-SAGFPHLR  294 (301)
Q Consensus       232 L~pgg~lli~e~~~~~~~-~~-~~~~~-~-~~----~~d~~m~~~--------~~~~g~~rt~~e~~~~l~-~aGf~~~~  294 (301)
                      |+|||++++.-...++.. .. ..... + ..    +.|+...++        ...--.-++.+|++++++ +.||++..
T Consensus       215 L~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F~I~~  294 (374)
T 3b5i_A          215 VKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSFAIDK  294 (374)
T ss_dssp             EEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred             hCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCcEEEE
Confidence            999999888776554321 00 00000 0 00    111100000        000122379999999998 59999877


Q ss_pred             EEE
Q 043063          295 LYR  297 (301)
Q Consensus       295 ~~~  297 (301)
                      +.-
T Consensus       295 le~  297 (374)
T 3b5i_A          295 LVV  297 (374)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=97.73  E-value=3e-05  Score=71.81  Aligned_cols=89  Identities=19%  Similarity=0.252  Sum_probs=64.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC-c-ccEeeH
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP-A-ADAIFM  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p-~-~D~v~~  209 (301)
                      ..+..+|||+|||+|                +.+|. +..++.+++      ..+++++.+|+...   ++ . .|+|++
T Consensus       257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~  336 (450)
T 2yxl_A          257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL  336 (450)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence            556689999999995                45676 555555432      25799999998764   33 3 599985


Q ss_pred             ------hhhhccCChH-------HH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063          210 ------KWVLTTWTDD-------EC-------KLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 ------~~vlh~~~d~-------~~-------~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                            ..+++..++.       +.       .++|+++.+.|+|||+|++.++...
T Consensus       337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~  393 (450)
T 2yxl_A          337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIF  393 (450)
T ss_dssp             ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence                  4556554442       11       5789999999999999998887654

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=97.72  E-value=1.4e-05  Score=66.69  Aligned_cols=78  Identities=23%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             CCCcceEEeecCCce--------------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccC----
Q 043063          158 FKGVKRLVDVGGSAG--------------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSI----  201 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~----  201 (301)
                      ..+..+|||||||+|                    +.+|. +.+++.+++           .++++++.+|+.+..    
T Consensus        78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~  157 (227)
T 2pbf_A           78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK  157 (227)
T ss_dssp             SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence            445689999999985                    13465 666655543           258999999987654    


Q ss_pred             Cc---ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          202 PA---ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       202 p~---~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +.   .|+|++...+|++        ++++.+.|+|||++++.-.
T Consensus       158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~LkpgG~lv~~~~  194 (227)
T 2pbf_A          158 KELGLFDAIHVGASASEL--------PEILVDLLAENGKLIIPIE  194 (227)
T ss_dssp             HHHCCEEEEEECSBBSSC--------CHHHHHHEEEEEEEEEEEE
T ss_pred             ccCCCcCEEEECCchHHH--------HHHHHHhcCCCcEEEEEEc
Confidence            22   4999999888765        4667889999999888755

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=97.71  E-value=2.1e-05  Score=75.22  Aligned_cols=112  Identities=19%  Similarity=0.173  Sum_probs=74.6

Q ss_pred             CchhccccCchHHHHHHHHHhcCCccchHHhhhcCC---CCCCcceEEeecCCceeee-------------------ehh
Q 043063          121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYD---GFKGVKRLVDVGGSAGINF-------------------DLP  178 (301)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~---~~~~~~~vlDvGgG~g~~~-------------------Dlp  178 (301)
                      ..|+.+++++-....|.+|+..       ++.+...   .-.+...|+|||||+|++.                   +-.
T Consensus       322 ~tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEkn  394 (637)
T 4gqb_A          322 QTYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKN  394 (637)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESC
T ss_pred             hhhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            3578788999888899998852       2222111   1224568999999998432                   222


Q ss_pred             HHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEE
Q 043063          179 EVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLI  239 (301)
Q Consensus       179 ~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~ll  239 (301)
                      +++..+++       .++|+++.||+.+- .|+ +|+|+.-.+=...-.+-...+|....+.|+|||.++
T Consensus       395 p~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKPgGimi  464 (637)
T 4gqb_A          395 PNAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKDDGVSI  464 (637)
T ss_dssp             HHHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred             HHHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence            22222221       38999999999875 887 699887655444444445677888888999998754

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=97.71  E-value=1.7e-05  Score=68.47  Aligned_cols=89  Identities=13%  Similarity=0.185  Sum_probs=60.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-C-----Cc-ccEe
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-I-----PA-ADAI  207 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~-----p~-~D~v  207 (301)
                      .....+|||+|||+|                +.+|. +..++.+++      ..+++++.+|+.+. .     +. .|+|
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V  160 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI  160 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence            456689999999995                45687 666665443      25899999998754 2     22 4998


Q ss_pred             eHh------hhhcc---CChH-------HHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          208 FMK------WVLTT---WTDD-------ECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       208 ~~~------~vlh~---~~d~-------~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      ++.      .+++.   |+.+       ...++|+++.+.|+|||++++..+...
T Consensus       161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs~~  215 (274)
T 3ajd_A          161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSME  215 (274)
T ss_dssp             EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESCCC
T ss_pred             EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCC
Confidence            875      33321   2221       236899999999999999998776554

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=97.68  E-value=1e-05  Score=69.80  Aligned_cols=83  Identities=17%  Similarity=0.201  Sum_probs=62.4

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CC-cccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IP-AADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p-~~D~v~~~~vl  213 (301)
                      +.+..+|||+|||+|               +.+|. |.+++.+++      .++++++.+|+.+. .+ ..|+|++....
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~  196 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH  196 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence            456689999999995               46787 777776653      25789999999876 21 25999876432


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                            ...++++++.+.|+|||++++......
T Consensus       197 ------~~~~~l~~~~~~LkpgG~l~~s~~~~~  223 (272)
T 3a27_A          197 ------KTHKFLDKTFEFLKDRGVIHYHETVAE  223 (272)
T ss_dssp             ------SGGGGHHHHHHHEEEEEEEEEEEEEEG
T ss_pred             ------cHHHHHHHHHHHcCCCCEEEEEEcCcc
Confidence                  345789999999999999998877553

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=97.67  E-value=2.7e-05  Score=67.70  Aligned_cols=80  Identities=14%  Similarity=0.164  Sum_probs=54.1

Q ss_pred             CCCcceEEeecCCc------e--------------eeeehhHHHhhCCCCCceeE-EeCCCCcc-CCc-ccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSA------G--------------INFDLPEVVAEAPSIPGVTH-IGGDMFKS-IPA-ADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~------g--------------~~~Dlp~v~~~a~~~~ri~~-~~gd~~~~-~p~-~D~v~~~~vlh  214 (301)
                      +.+..+|||||||+      |              +.+|+.+.      .+++++ +.+|+.+. ++. .|+|++....+
T Consensus        61 l~~g~~VLDLGcGsg~~~GpGs~~~a~~~~~~~~V~gvDis~~------v~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~  134 (290)
T 2xyq_A           61 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDF------VSDADSTLIGDCATVHTANKWDLIISDMYDP  134 (290)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCC------BCSSSEEEESCGGGCCCSSCEEEEEECCCCC
T ss_pred             CCCCCEEEEeCCCCCCCCCcHHHHHHHHcCCCCEEEEEECCCC------CCCCEEEEECccccCCccCcccEEEEcCCcc
Confidence            56678999999944      3              23344221      247899 99999875 444 59999753211


Q ss_pred             c-----CC----hHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          215 T-----WT----DDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       215 ~-----~~----d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .     .+    .+....+|+.+++.|+|||++++...
T Consensus       135 ~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~  172 (290)
T 2xyq_A          135 RTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  172 (290)
T ss_dssp             C---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             ccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            1     01    12345899999999999999998654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=97.66  E-value=3.8e-05  Score=62.99  Aligned_cols=73  Identities=15%  Similarity=0.177  Sum_probs=56.3

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCCC----C-ceeEEeCCCCccCCc-ccEeeHhhhhccCC
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPSI----P-GVTHIGGDMFKSIPA-ADAIFMKWVLTTWT  217 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~~----~-ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~  217 (301)
                      ....+|||+|||+|              +++|. |.+++.+++.    . +++++.+|+.+ +|. .|+|++.-.+|.+.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCcccc
Confidence            34579999999996              46787 7777666531    2 79999999876 344 69999998888877


Q ss_pred             hHHHHHHHHHHHHhC
Q 043063          218 DDECKLIMENCYKAI  232 (301)
Q Consensus       218 d~~~~~iL~~~~~aL  232 (301)
                      .....++|+++.+.+
T Consensus       127 ~~~~~~~l~~~~~~l  141 (207)
T 1wy7_A          127 KHADRPFLLKAFEIS  141 (207)
T ss_dssp             TTTTHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHhc
Confidence            555568899999988

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=97.65  E-value=3.7e-05  Score=69.42  Aligned_cols=82  Identities=11%  Similarity=0.018  Sum_probs=55.7

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~  211 (301)
                      +.+..+|||+|||+|               +++|. |.+++.|++       .++|++..+|+.+. .+.  .|+|++.-
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np  294 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL  294 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence            456789999999996               46787 777777664       15899999999875 442  59999864


Q ss_pred             hhccCC-----hHH-HHHHHHHHHHhCCCCCEEEEe
Q 043063          212 VLTTWT-----DDE-CKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       212 vlh~~~-----d~~-~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .++...     -.+ -.++++.+++.|  +|+++++
T Consensus       295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i  328 (373)
T 3tm4_A          295 PYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFI  328 (373)
T ss_dssp             CCC------CCHHHHHHHHHHHHHHHE--EEEEEEE
T ss_pred             CCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEE
Confidence            433211     111 257888888888  5555444

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=97.62  E-value=2.3e-05  Score=63.65  Aligned_cols=82  Identities=21%  Similarity=0.367  Sum_probs=54.7

Q ss_pred             CCCcceEEeecCCceee------------------------eehhHHHhhCCCCCceeEE-eCCCCcc---------CCc
Q 043063          158 FKGVKRLVDVGGSAGIN------------------------FDLPEVVAEAPSIPGVTHI-GGDMFKS---------IPA  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g~~------------------------~Dlp~v~~~a~~~~ri~~~-~gd~~~~---------~p~  203 (301)
                      +.+..+|||||||+|..                        +|+.+.    ....+++++ .+|+...         ++.
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~   95 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHI----FPLEGATFLCPADVTDPRTSQRILEVLPG   95 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCC----CCCTTCEEECSCCTTSHHHHHHHHHHSGG
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhc----ccCCCCeEEEeccCCCHHHHHHHHHhcCC
Confidence            45678999999999732                        222111    113678999 9998753         222


Q ss_pred             --ccEeeHhhhhcc----CChHH-----HHHHHHHHHHhCCCCCEEEEecc
Q 043063          204 --ADAIFMKWVLTT----WTDDE-----CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       204 --~D~v~~~~vlh~----~~d~~-----~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                        .|+|++...+|.    ..|..     ...+|+++++.|+|||++++...
T Consensus        96 ~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           96 RRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             GCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence              599998654432    12221     14789999999999999998765

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=97.60  E-value=3e-05  Score=68.94  Aligned_cols=85  Identities=15%  Similarity=0.148  Sum_probs=59.9

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CC-ceeEEeCCCCccC------C-cccEeeHh
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IP-GVTHIGGDMFKSI------P-AADAIFMK  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~-ri~~~~gd~~~~~------p-~~D~v~~~  210 (301)
                      ...+|||+|||+|             +.+|. +.+++.+++       .+ +++++.+|+++..      . ..|+|++.
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d  232 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD  232 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence            3569999999995             56787 777776654       12 5999999998642      2 25999883


Q ss_pred             hh---------hccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          211 WV---------LTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       211 ~v---------lh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      --         ++++ .+...++++++.+.|+|||.+++.....
T Consensus       233 PP~~~~~~~~~~~~~-~~~~~~ll~~~~~~LkpgG~lli~~~~~  275 (332)
T 2igt_A          233 PPKFGRGTHGEVWQL-FDHLPLMLDICREILSPKALGLVLTAYS  275 (332)
T ss_dssp             CCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             CccccCCchHHHHHH-HHHHHHHHHHHHHhcCcCcEEEEEECCC
Confidence            21         1111 1235689999999999999977766543

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=97.58  E-value=4e-05  Score=65.03  Aligned_cols=54  Identities=9%  Similarity=0.318  Sum_probs=39.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA  203 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~  203 (301)
                      ..+++.++ ..+..+|||||||+|             +++|. +.+++.+++    .++++++.+|+.+. ++.
T Consensus        20 ~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~   92 (244)
T 1qam_A           20 DKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPK   92 (244)
T ss_dssp             HHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCS
T ss_pred             HHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCccc
Confidence            44555554 566789999999996             56787 666665543    36899999999874 553

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=97.54  E-value=5.8e-05  Score=66.03  Aligned_cols=85  Identities=16%  Similarity=0.260  Sum_probs=54.8

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCcccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPAADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~~D~v~  208 (301)
                      .+++..+ ..+..+|||||||+|             +++|. +.+++.+++      .++++++.+|+.+. .+..|+|+
T Consensus        33 ~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~D~Vv  111 (299)
T 2h1r_A           33 KIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKFDVCT  111 (299)
T ss_dssp             HHHHHHC-CCTTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCCSEEE
T ss_pred             HHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccCCEEE
Confidence            3444443 556789999999996             56787 777666543      26899999999765 55569988


Q ss_pred             HhhhhccCChHHHHHHH---------------HHHHHhCCCCC
Q 043063          209 MKWVLTTWTDDECKLIM---------------ENCYKAIPAGG  236 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL---------------~~~~~aL~pgg  236 (301)
                      +.- .++++.+...++|               ..+.+.+.|+|
T Consensus       112 ~n~-py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G  153 (299)
T 2h1r_A          112 ANI-PYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG  153 (299)
T ss_dssp             EEC-CGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred             EcC-CcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence            754 4456666666666               33567777765

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=97.54  E-value=8e-05  Score=68.05  Aligned_cols=81  Identities=19%  Similarity=0.246  Sum_probs=55.8

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCCCCceeEEeCCCCccCC--cccEeeHhhhhc------
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPSIPGVTHIGGDMFKSIP--AADAIFMKWVLT------  214 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p--~~D~v~~~~vlh------  214 (301)
                      ...+|||+|||+|                +++|+ |.+++.+   .+++++.+|+++..+  ..|+|++.--..      
T Consensus        39 ~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---~~~~~~~~D~~~~~~~~~fD~Ii~NPPy~~~~~~~  115 (421)
T 2ih2_A           39 RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---PWAEGILADFLLWEPGEAFDLILGNPPYGIVGEAS  115 (421)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---TTEEEEESCGGGCCCSSCEEEEEECCCCCCBSCTT
T ss_pred             CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---CCCcEEeCChhhcCccCCCCEEEECcCccCccccc
Confidence            4469999999996                24465 5555444   689999999987643  259999841111      


Q ss_pred             ----cCChHH-----------------HHHHHHHHHHhCCCCCEEEEecc
Q 043063          215 ----TWTDDE-----------------CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       215 ----~~~d~~-----------------~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                          +++++.                 ...+++++.+.|+|||+++++-+
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p  165 (421)
T 2ih2_A          116 KYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP  165 (421)
T ss_dssp             TCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence                122222                 12679999999999999887765

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=97.47  E-value=3.7e-05  Score=71.17  Aligned_cols=88  Identities=13%  Similarity=0.221  Sum_probs=61.1

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeH-
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFM-  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~-  209 (301)
                      .....+|||+|||+|                +.+|+ +..++.+++      .. |.++.+|..+.   .+. .|+|++ 
T Consensus        99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A           99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred             cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence            456789999999995                45687 666666543      24 89999997653   233 599984 


Q ss_pred             -----hhhh-------ccCChHHH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063          210 -----KWVL-------TTWTDDEC-------KLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 -----~~vl-------h~~~d~~~-------~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                           ..++       ..|+.++.       .++|+.+.+.|+|||+|+...+...
T Consensus       178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs~~  233 (464)
T 3m6w_A          178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFA  233 (464)
T ss_dssp             CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCC
T ss_pred             CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeccCc
Confidence                 1222       23443332       6899999999999999998766543

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.44  E-value=0.00013  Score=68.02  Aligned_cols=87  Identities=22%  Similarity=0.390  Sum_probs=61.2

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeH---
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFM---  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~---  209 (301)
                      ...+|||+|||+|                +.+|. +..++.+++      ..+|+++.+|....   .+. .|+|++   
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P  196 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP  196 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence            5689999999995                45687 666665543      25799999998753   233 599986   


Q ss_pred             ---hhhhc-------cCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          210 ---KWVLT-------TWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 ---~~vlh-------~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                         ..+++       .|+.++       ..++|+++.+.|+|||+|+...+...
T Consensus       197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs~~  250 (479)
T 2frx_A          197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLN  250 (479)
T ss_dssp             CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCS
T ss_pred             cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEecccCC
Confidence               12332       344332       24789999999999999998776553

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.36  E-value=0.00037  Score=62.79  Aligned_cols=105  Identities=11%  Similarity=0.149  Sum_probs=62.6

Q ss_pred             EEeCCCCcc-CCcc--cEeeHhhhhccCChHH-------------------------HH------------HHHHHHHHh
Q 043063          192 HIGGDMFKS-IPAA--DAIFMKWVLTTWTDDE-------------------------CK------------LIMENCYKA  231 (301)
Q Consensus       192 ~~~gd~~~~-~p~~--D~v~~~~vlh~~~d~~-------------------------~~------------~iL~~~~~a  231 (301)
                      -++|.|+.. +|..  |+++.+..||-+++..                         +.            .+|+..++.
T Consensus       135 gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra~e  214 (384)
T 2efj_A          135 AMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHSEE  214 (384)
T ss_dssp             ECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            366778776 7863  9999999998655421                         22            237888999


Q ss_pred             CCCCCEEEEeccccCCCC-CChHH-hhhhhhccHHHHhh--------hhccccccCHHHHHHHHHhCC-CCceEEE
Q 043063          232 IPAGGKLIACEPVLPDDS-NESQR-TRALLEGDIFVMTI--------YRAKGKHMTEQEFKQLGFSAG-FPHLRLY  296 (301)
Q Consensus       232 L~pgg~lli~e~~~~~~~-~~~~~-~~~~~~~d~~m~~~--------~~~~g~~rt~~e~~~~l~~aG-f~~~~~~  296 (301)
                      |+|||++++.-...+... .+... .-...+.++...++        ...--.-++.+|++++++++| |++.++.
T Consensus       215 L~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~le  290 (384)
T 2efj_A          215 LISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYLE  290 (384)
T ss_dssp             EEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEEE
T ss_pred             hccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEEE
Confidence            999999988776554320 10000 11111222211110        000123369999999999984 7776654

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=97.35  E-value=9.8e-05  Score=65.81  Aligned_cols=84  Identities=18%  Similarity=0.211  Sum_probs=61.5

Q ss_pred             CcceEEeecCCce--------------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCC-c-ccEeeHhh
Q 043063          160 GVKRLVDVGGSAG--------------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIP-A-ADAIFMKW  211 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p-~-~D~v~~~~  211 (301)
                      ...+|||+|||+|                    +++|+ |.+++.|+.     ..++.+..+|.+.+.+ . .|+|++.-
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP  209 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL  209 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence            4679999999996                    23465 555555543     1268999999987643 2 59999987


Q ss_pred             hhccCChHHH----------------HHHHHHHHHhCCCCCEEEEecc
Q 043063          212 VLTTWTDDEC----------------KLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       212 vlh~~~d~~~----------------~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .++.++.++.                ..+++++.+.|+|||+++++-+
T Consensus       210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            7776655432                2689999999999998877764

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=97.32  E-value=0.00018  Score=66.20  Aligned_cols=89  Identities=16%  Similarity=0.201  Sum_probs=61.8

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc---CC-c-ccEeeH--
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS---IP-A-ADAIFM--  209 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~p-~-~D~v~~--  209 (301)
                      ..+..+|||+|||+|               +.+|. +..++.+++     .-+++++.+|+...   ++ . .|+|++  
T Consensus       244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~  323 (429)
T 1sqg_A          244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA  323 (429)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred             CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence            456679999999996               45676 555544432     12588999998764   33 2 599985  


Q ss_pred             ----hhhhccCChH-------HH-------HHHHHHHHHhCCCCCEEEEeccccC
Q 043063          210 ----KWVLTTWTDD-------EC-------KLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       210 ----~~vlh~~~d~-------~~-------~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                          ..+++..++.       +.       .++|+++.+.|+|||+|++.++...
T Consensus       324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~  378 (429)
T 1sqg_A          324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVL  378 (429)
T ss_dssp             CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCC
T ss_pred             CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence                3455544442       21       4889999999999999999886554

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.31  E-value=0.0013  Score=58.71  Aligned_cols=106  Identities=9%  Similarity=0.120  Sum_probs=64.1

Q ss_pred             eEEeCCCCcc-CCcc--cEeeHhhhhccCChH-------------------------------HHHHHHHHHHHhCCCCC
Q 043063          191 THIGGDMFKS-IPAA--DAIFMKWVLTTWTDD-------------------------------ECKLIMENCYKAIPAGG  236 (301)
Q Consensus       191 ~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d~-------------------------------~~~~iL~~~~~aL~pgg  236 (301)
                      .-++|.|+.. +|..  |+++.+..||-+++.                               +-..+|+..++.|+|||
T Consensus       124 ~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG  203 (359)
T 1m6e_X          124 NGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGG  203 (359)
T ss_dssp             EEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTC
T ss_pred             EecchhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            3467888876 8873  999999999865541                               22356999999999999


Q ss_pred             EEEEeccccCCCCC-Ch-----HHhhhhhhccHHHHhh--------hhccccccCHHHHHHHHHhCCC-CceEEE
Q 043063          237 KLIACEPVLPDDSN-ES-----QRTRALLEGDIFVMTI--------YRAKGKHMTEQEFKQLGFSAGF-PHLRLY  296 (301)
Q Consensus       237 ~lli~e~~~~~~~~-~~-----~~~~~~~~~d~~m~~~--------~~~~g~~rt~~e~~~~l~~aGf-~~~~~~  296 (301)
                      ++++.-...+.... ..     ...-...+.|+...++        ...--.-++.+|++++++++|+ ++..+.
T Consensus       204 ~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          204 RMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             eEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence            99887765543210 00     0000111122211110        0011234689999999999955 665543

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=97.29  E-value=5.1e-05  Score=69.01  Aligned_cols=85  Identities=19%  Similarity=0.255  Sum_probs=60.3

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC------C-CceeEEeCCCCccC------C-cccEeeHh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I-PGVTHIGGDMFKSI------P-AADAIFMK  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~-~ri~~~~gd~~~~~------p-~~D~v~~~  210 (301)
                      +..+|||+|||+|              +.+|. |..++.+++      . ++++++.+|+++..      + ..|+|++.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d  296 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD  296 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence            5679999999995              46787 777766653      1 28999999987642      2 24999873


Q ss_pred             hhhccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          211 WVLTTWTD-------DECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       211 ~vlh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      --.+..+.       .....+++++.+.|+|||.+++....
T Consensus       297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  337 (396)
T 2as0_A          297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCS  337 (396)
T ss_dssp             CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            21111111       34568999999999999998887763

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=97.28  E-value=8.3e-05  Score=67.41  Aligned_cols=85  Identities=13%  Similarity=0.128  Sum_probs=59.2

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC------C-C-ceeEEeCCCCccCC-------cccEee
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I-P-GVTHIGGDMFKSIP-------AADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~-~-ri~~~~gd~~~~~p-------~~D~v~  208 (301)
                      .+..+|||+|||+|              +.+|. |.+++.|++      . + +++|+.+|+++.++       ..|+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            45679999999995              46787 777776653      1 2 89999999976422       249998


Q ss_pred             Hhhhh-----ccCCh--HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MKWVL-----TTWTD--DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vl-----h~~~d--~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +.--.     +...+  +...++++.+.+.|+|||.|++...
T Consensus       291 ~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~  332 (385)
T 2b78_A          291 IDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN  332 (385)
T ss_dssp             ECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            73211     12222  2345688899999999999887654

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=97.28  E-value=7.3e-05  Score=67.68  Aligned_cols=85  Identities=19%  Similarity=0.185  Sum_probs=60.4

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC------Cc-ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI------PA-ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~------p~-~D~v~~~~v  212 (301)
                      +..+|||+|||+|             +.+|. |..++.+++      .++++++.+|+++..      +. .|+|++.--
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP  288 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  288 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECCC
Confidence            5679999999996             46787 777776653      245999999987642      22 499987321


Q ss_pred             hccCCh-------HHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          213 LTTWTD-------DECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       213 lh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      .+..+.       +....+++++.+.|+|||.+++....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          289 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            111111       33568999999999999999887753

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=97.27  E-value=0.00011  Score=65.24  Aligned_cols=82  Identities=12%  Similarity=0.127  Sum_probs=61.0

Q ss_pred             CCcceEEeecCCce------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCcccEeeHhhhhccCCh
Q 043063          159 KGVKRLVDVGGSAG------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPAADAIFMKWVLTTWTD  218 (301)
Q Consensus       159 ~~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d  218 (301)
                      .+..+|||+|||+|            +.+|. |..++.+++       .++++++.+|+++.....|+|++.-     | 
T Consensus       194 ~~~~~VLDlg~G~G~~~l~a~~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dp-----P-  267 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNL-----P-  267 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHHTTTSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECC-----T-
T ss_pred             CCCCEEEEccCccCHHHHhccCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECC-----c-
Confidence            35679999999996            45687 777766553       2589999999986553469998732     1 


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      .....+++.+.+.|+|||.+++.+....
T Consensus       268 ~~~~~~l~~~~~~L~~gG~l~~~~~~~~  295 (336)
T 2yx1_A          268 KFAHKFIDKALDIVEEGGVIHYYTIGKD  295 (336)
T ss_dssp             TTGGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred             HhHHHHHHHHHHHcCCCCEEEEEEeecC
Confidence            1223889999999999999998887554

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.26  E-value=0.00011  Score=70.66  Aligned_cols=112  Identities=13%  Similarity=0.008  Sum_probs=72.4

Q ss_pred             CchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCceeeeehh-HHHh-----------------
Q 043063          121 PTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAGINFDLP-EVVA-----------------  182 (301)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g~~~Dlp-~v~~-----------------  182 (301)
                      ..|+.+++++-..+.|.+|+...       +.+....-.+...|+|||||+|++.+.. ...+                 
T Consensus       377 ~tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kV  449 (745)
T 3ua3_A          377 GVYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKL  449 (745)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEE
T ss_pred             HHHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEE
Confidence            35777888888888998888542       2111111123568999999998664320 0000                 


Q ss_pred             -----------hCC-----C-CCceeEEeCCCCcc-C------Cc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCE
Q 043063          183 -----------EAP-----S-IPGVTHIGGDMFKS-I------PA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGK  237 (301)
Q Consensus       183 -----------~a~-----~-~~ri~~~~gd~~~~-~------p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~  237 (301)
                                 ..+     . .++|+++.+|+.+- .      |+ +|+|+.-..=.....+-....|..+.+.|+|||.
T Consensus       450 yAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp~Gi  529 (745)
T 3ua3_A          450 YIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKPTTI  529 (745)
T ss_dssp             EEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCTTCE
T ss_pred             EEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCCCcE
Confidence                       000     0 37899999999875 6      44 6998876653333444466788888899999996


Q ss_pred             EE
Q 043063          238 LI  239 (301)
Q Consensus       238 ll  239 (301)
                      ++
T Consensus       530 ~i  531 (745)
T 3ua3_A          530 SI  531 (745)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=97.25  E-value=0.00066  Score=60.18  Aligned_cols=129  Identities=12%  Similarity=0.119  Sum_probs=86.5

Q ss_pred             CcceEEeecCCce-------------ee--eehhHHHhhCCC---------------------------CCceeEEeCCC
Q 043063          160 GVKRLVDVGGSAG-------------IN--FDLPEVVAEAPS---------------------------IPGVTHIGGDM  197 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~--~Dlp~v~~~a~~---------------------------~~ri~~~~gd~  197 (301)
                      +...||.+|||..             .+  +|.|++++.-++                           .++..+++.|+
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            4689999999982             23  477987754221                           26899999999


Q ss_pred             Ccc-C--------C--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHH
Q 043063          198 FKS-I--------P--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFV  265 (301)
Q Consensus       198 ~~~-~--------p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m  265 (301)
                      .+. +        +  . ..++++--+|++++.+++..+|+.+.+.+ |+|.+++.|.+.+..+... ..... ...+.-
T Consensus       177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~-fg~~m-~~~l~~  253 (334)
T 1rjd_A          177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQPNDR-FGAIM-QSNLKE  253 (334)
T ss_dssp             TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCC-HHHHH-HHHHHH
T ss_pred             CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCCCcch-HHHHH-HHHhhc
Confidence            873 2        1  1 26899999999999999999999999877 7888889998887332211 11100 000000


Q ss_pred             -Hhhhhcc-ccccCHHHHHHHHHhCCCC
Q 043063          266 -MTIYRAK-GKHMTEQEFKQLGFSAGFP  291 (301)
Q Consensus       266 -~~~~~~~-g~~rt~~e~~~~l~~aGf~  291 (301)
                       .++...+ ..-.|.++..+.|.++||+
T Consensus       254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~  281 (334)
T 1rjd_A          254 SRNLEMPTLMTYNSKEKYASRWSAAPNV  281 (334)
T ss_dssp             HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred             ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence             1101111 1235899999999999997

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=97.24  E-value=0.00013  Score=67.44  Aligned_cols=89  Identities=15%  Similarity=0.271  Sum_probs=60.5

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc-ccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA-ADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~-~D~v~~~  210 (301)
                      .....+|||+|||+|                +.+|+ +..++.+++      ..+|.+..+|....   .+. .|+|++-
T Consensus       103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D  182 (456)
T 3m4x_A          103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD  182 (456)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence            456789999999995                35687 666655543      35799999997653   333 5998862


Q ss_pred             ------hhh-------ccCChHH-------HHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          211 ------WVL-------TTWTDDE-------CKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       211 ------~vl-------h~~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                            .++       ..|+.++       ..++|+++.+.|+|||+|+...+...
T Consensus       183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~  238 (456)
T 3m4x_A          183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFA  238 (456)
T ss_dssp             CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESCCC
T ss_pred             CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEeecc
Confidence                  122       2233222       13889999999999999998776553

>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}

Probab=97.12  E-value=0.00019  Score=52.93  Aligned_cols=63  Identities=16%  Similarity=0.161  Sum_probs=54.1

Q ss_pred             cccccccccCC-CCCCHHHHHHHh--CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcC
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRI--LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTD   77 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~--~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~   77 (301)
                      .+..|++.|.. |+.|+.+||+.+  ++    .+..+++-|+.|...|+|+..+    .+.|++|+.+..+...
T Consensus        14 ~d~~IL~~L~~~g~~s~~eLA~~l~~gi----S~~aVs~rL~~Le~~GLV~~~~----rg~Y~LT~~G~~~l~~   79 (111)
T 3b73_A           14 WDDRILEIIHEEGNGSPKELEDRDEIRI----SKSSVSRRLKKLADHDLLQPLA----NGVYVITEEGEAYLNG   79 (111)
T ss_dssp             HHHHHHHHHHHHSCBCHHHHHTSTTCCS----CHHHHHHHHHHHHHTTSEEECS----TTCEEECHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEecC----CceEEECchHHHHHHH
Confidence            45678889976 999999999999  99    6889999999999999999872    5689999999765544

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=97.11  E-value=0.00013  Score=66.25  Aligned_cols=84  Identities=20%  Similarity=0.186  Sum_probs=59.8

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC------C-C-ceeEEeCCCCccCC-------cccEee
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------I-P-GVTHIGGDMFKSIP-------AADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~-~-ri~~~~gd~~~~~p-------~~D~v~  208 (301)
                      .+..+|||+|||+|              +.+|. +..++.+++      . + +++++.+|+++..+       ..|+|+
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii  298 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV  298 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence            35679999999995              46787 777766543      2 3 89999999876422       259988


Q ss_pred             Hhhhh--------ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MKWVL--------TTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vl--------h~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +.--.        +... .....++.++.+.|+|||.+++...
T Consensus       299 ~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~LkpgG~l~~~~~  340 (396)
T 3c0k_A          299 MDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNEGGILLTFSC  340 (396)
T ss_dssp             ECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            74211        1111 3456899999999999999887654

>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5

Probab=97.11  E-value=0.0002  Score=51.35  Aligned_cols=55  Identities=18%  Similarity=0.223  Sum_probs=48.6

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      ++.|++.| .++.|+.+||+.+|+    .+..+.+.|+.|...|++.+.    . +.|++++.++
T Consensus        33 r~~Il~~L-~~~~~~~eLa~~l~i----s~~tv~~~L~~L~~~Glv~~~----~-g~y~l~~~g~   87 (96)
T 1y0u_A           33 RRKILRML-DKGRSEEEIMQTLSL----SKKQLDYHLKVLEAGFCIERV----G-ERWVVTDAGK   87 (96)
T ss_dssp             HHHHHHHH-HTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----T-TEEEECTTTC
T ss_pred             HHHHHHHH-cCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE----C-CEEEECCCch
Confidence            45678888 789999999999999    788999999999999999988    3 6999998654

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=96.90  E-value=0.00075  Score=58.76  Aligned_cols=61  Identities=11%  Similarity=0.223  Sum_probs=44.6

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccEe
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADAI  207 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~v  207 (301)
                      ..+++..+ .....+|||||||+|             +.+|. +.+++.+++    .++++++.+|+.+. ++.  .|+|
T Consensus        40 ~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~fD~I  118 (295)
T 3gru_A           40 NKAVESAN-LTKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDFNKV  118 (295)
T ss_dssp             HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCCSEE
T ss_pred             HHHHHhcC-CCCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCccEE
Confidence            34555554 666789999999996             56787 666666554    37999999999874 665  4888


Q ss_pred             eHh
Q 043063          208 FMK  210 (301)
Q Consensus       208 ~~~  210 (301)
                      +.+
T Consensus       119 v~N  121 (295)
T 3gru_A          119 VAN  121 (295)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            855

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=96.87  E-value=0.00018  Score=70.20  Aligned_cols=85  Identities=15%  Similarity=0.203  Sum_probs=60.0

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------C-CceeEEeCCCCccC---Cc-ccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------I-PGVTHIGGDMFKSI---PA-ADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~-~ri~~~~gd~~~~~---p~-~D~v~~~~v  212 (301)
                      ...+|||+|||+|              +.+|+ +..++.+++       . ++++++.+|+++.+   .. .|+|++.--
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP  618 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPP  618 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCC
T ss_pred             CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCc
Confidence            4579999999995              46787 777766653       1 48999999998742   22 599987321


Q ss_pred             h--------ccCC-hHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          213 L--------TTWT-DDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       213 l--------h~~~-d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      .        +.+. ...-.++++++.+.|+|||.|++....
T Consensus       619 ~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          619 TFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             SBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            1        1111 134568899999999999999866543

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=96.85  E-value=0.00061  Score=61.83  Aligned_cols=87  Identities=11%  Similarity=0.083  Sum_probs=58.2

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCCC-----CceeEEeCCCCccC---Cc-ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI-----PGVTHIGGDMFKSI---PA-ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~-----~ri~~~~gd~~~~~---p~-~D~v~~~~vlh~~  216 (301)
                      +..+|||+|||+|             +.+|+ |..++.+++.     -..++..+|+++.+   +. .|+|++.--....
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f~~  293 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTLVK  293 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCCCS
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcCCC
Confidence            4689999999995             56798 7777766541     11346688988642   22 5999874221111


Q ss_pred             Ch-------HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          217 TD-------DECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       217 ~d-------~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +.       ..-.++++.+.+.|+|||+|+++.+...
T Consensus       294 ~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~  330 (393)
T 4dmg_A          294 RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH  330 (393)
T ss_dssp             SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence            11       1235889999999999999987776443

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=96.84  E-value=0.0013  Score=60.44  Aligned_cols=77  Identities=13%  Similarity=0.214  Sum_probs=51.7

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-------cccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-------AADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-------~~D~v~~~  210 (301)
                      ..+..+|||+|||+|             +++|. +.+++.|++      .++++|+.+|+.+.++       ..|+|++.
T Consensus       284 ~~~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d  363 (433)
T 1uwv_A          284 VQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  363 (433)
T ss_dssp             CCTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             CCCCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence            445679999999996             56787 777777653      2589999999987422       24998862


Q ss_pred             hhhccCChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          211 WVLTTWTDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                           -|...+..+++.+.+ ++|++.+++
T Consensus       364 -----PPr~g~~~~~~~l~~-~~p~~ivyv  387 (433)
T 1uwv_A          364 -----PARAGAAGVMQQIIK-LEPIRIVYV  387 (433)
T ss_dssp             -----CCTTCCHHHHHHHHH-HCCSEEEEE
T ss_pred             -----CCCccHHHHHHHHHh-cCCCeEEEE
Confidence                 232223355665553 678766654

>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A

Probab=96.82  E-value=0.00026  Score=47.19  Aligned_cols=53  Identities=15%  Similarity=0.204  Sum_probs=45.3

Q ss_pred             ccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            8 DGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         8 ~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      +..|++.|..  .|+|..+||+.+|+    +...+.+.|..|...|+|...    ..++|+++
T Consensus        12 ~~~IL~~L~~~~~~~s~~eLA~~lgl----sr~tv~~~l~~L~~~G~I~~~----~~G~y~lg   66 (67)
T 2heo_A           12 EQKILQVLSDDGGPVAIFQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----SPKYWSIG   66 (67)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----ETTEEEEC
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEecC----CCceEeeC
Confidence            4568888864  58999999999999    789999999999999999876    36789875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=96.81  E-value=0.0013  Score=55.77  Aligned_cols=70  Identities=19%  Similarity=0.187  Sum_probs=46.4

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc-CCc--ccEee
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS-IPA--ADAIF  208 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~p~--~D~v~  208 (301)
                      ..+++..+ .....+|||||||+|              +++|+ +.+++.+++  ..+++++.+|+.+. ++.  .+.++
T Consensus        21 ~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~v   99 (249)
T 3ftd_A           21 KKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKELKV   99 (249)
T ss_dssp             HHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSEEE
T ss_pred             HHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCcEE
Confidence            34445553 556789999999995              46787 677776654  36899999999874 554  14555


Q ss_pred             HhhhhccCChH
Q 043063          209 MKWVLTTWTDD  219 (301)
Q Consensus       209 ~~~vlh~~~d~  219 (301)
                      +.+.-++.+.+
T Consensus       100 v~NlPy~i~~~  110 (249)
T 3ftd_A          100 VGNLPYNVASL  110 (249)
T ss_dssp             EEECCTTTHHH
T ss_pred             EEECchhccHH
Confidence            55554444443

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=96.78  E-value=0.0011  Score=60.76  Aligned_cols=76  Identities=9%  Similarity=0.026  Sum_probs=52.2

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc-ccEeeHhhhhccCCh
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTD  218 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d  218 (301)
                      +..+|||+|||+|             +.+|. +.+++.|++      .+ ++|+.+|+++..+. .|+|++.---.... 
T Consensus       290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~-  367 (425)
T 2jjq_A          290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSVKGFDTVIVDPPRAGLH-  367 (425)
T ss_dssp             CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCCTTCSEEEECCCTTCSC-
T ss_pred             CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCccCCCEEEEcCCccchH-
Confidence            4579999999996             56787 777777654      23 99999999876543 69988732211111 


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEe
Q 043063          219 DECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                         ..+++.+. .|+|+|.+++.
T Consensus       368 ---~~~~~~l~-~l~p~givyvs  386 (425)
T 2jjq_A          368 ---PRLVKRLN-REKPGVIVYVS  386 (425)
T ss_dssp             ---HHHHHHHH-HHCCSEEEEEE
T ss_pred             ---HHHHHHHH-hcCCCcEEEEE
Confidence               13555554 48999988775

>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A

Probab=96.76  E-value=0.00079  Score=48.67  Aligned_cols=59  Identities=20%  Similarity=0.184  Sum_probs=47.5

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .++.|+..|.+|+.|+.+||+.+|+    .+..+.+.|+.|...|++...+.+ ..-.|++|+.
T Consensus        24 ~r~~Il~~L~~~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~   82 (102)
T 3pqk_A           24 VRLMLVCTLVEGEFSVGELEQQIGI----GQPTLSQQLGVLRESGIVETRRNI-KQIFYRLTEA   82 (102)
T ss_dssp             HHHHHHHHHHTCCBCHHHHHHHHTC----CTTHHHHHHHHHHHTTSEEEECSS-SCCEEEECSS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECcH
Confidence            4566788887799999999999999    688999999999999999876411 2235777763

>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19

Probab=96.75  E-value=0.00043  Score=47.57  Aligned_cols=59  Identities=15%  Similarity=0.080  Sum_probs=47.7

Q ss_pred             cccccccCC-CCCCHHHHHHHhCCCCCCCcc-cHHHHHHHHhcCcceeccccccCCCeEecChhchh
Q 043063            9 GGKKGRLAN-TPLSASQILTRILPSGGGDAE-NLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS   73 (301)
Q Consensus         9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~-~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~   73 (301)
                      -.|.+.|.. ||.|+.+||+.+|+    .+. .+++.|..|...|+|++.+.+ .+ .|++|+.++.
T Consensus        14 ~~IL~~Lk~~g~~ta~eiA~~Lgi----t~~~aVr~hL~~Le~eGlV~~~~~g-RP-~w~LT~~g~~   74 (79)
T 1xmk_A           14 EKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQGTT-PP-IWHLTDKKRE   74 (79)
T ss_dssp             HHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEECSS-SC-EEEECHHHHT
T ss_pred             HHHHHHHHHcCCcCHHHHHHHcCC----CcHHHHHHHHHHHHHCCCEEecCCC-CC-CeEeCHhHHh
Confidence            346677764 89999999999999    677 999999999999999865321 23 8999998753

>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}

Probab=96.72  E-value=0.00079  Score=48.25  Aligned_cols=59  Identities=20%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .++.|+..|.+++.|+.+||+.+|+    .+..+.+.|+.|...|++.+.+.+ ..-.|++++.
T Consensus        24 ~r~~Il~~L~~~~~~~~ela~~l~i----s~~tvs~~L~~L~~~Glv~~~~~g-~~~~y~l~~~   82 (98)
T 3jth_A           24 RRLQILCMLHNQELSVGELCAKLQL----SQSALSQHLAWLRRDGLVTTRKEA-QTVYYTLKSE   82 (98)
T ss_dssp             HHHHHHHHTTTSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCT-TCCEEEECCH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEECHH
Confidence            3567888898899999999999999    788999999999999999877421 2235777764

>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A

Probab=96.71  E-value=0.0012  Score=47.14  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=48.9

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      .|+..|..+ .+..+||..+|+    +++.++..++.|...|++++.     .+.|.+|+.++.+..
T Consensus        12 ~IL~~i~~~-~~~t~La~~~~l----s~~~~~~~l~~L~~~GLI~~~-----~~~~~LT~kG~~~l~   68 (95)
T 1r7j_A           12 AILEACKSG-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE-----GKQYMLTKKGEELLE   68 (95)
T ss_dssp             HHHHHHTTC-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHH
T ss_pred             HHHHHHHcC-CCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEE-----CCeeEEChhHHHHHH
Confidence            344555556 899999999999    899999999999999999998     567999999986653

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=96.64  E-value=0.0027  Score=55.63  Aligned_cols=134  Identities=13%  Similarity=0.072  Sum_probs=84.8

Q ss_pred             CcceEEeecCCc-----------e-ee--eehhHHHhhCC---------CCCceeEEeCCCCccCC----------c-cc
Q 043063          160 GVKRLVDVGGSA-----------G-IN--FDLPEVVAEAP---------SIPGVTHIGGDMFKSIP----------A-AD  205 (301)
Q Consensus       160 ~~~~vlDvGgG~-----------g-~~--~Dlp~v~~~a~---------~~~ri~~~~gd~~~~~p----------~-~D  205 (301)
                      +...||+||||.           + .+  +|.|.|++..+         ..++..+++.|+.+.+.          . .-
T Consensus       102 g~~QvV~LGaGlDTra~Rl~~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt  181 (310)
T 2uyo_A          102 GIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART  181 (310)
T ss_dssp             TCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred             CCCeEEEeCCCCCchhhhccCCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCE
Confidence            457899999998           1 23  47798877643         24789999999986421          1 14


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHh------hhhccccc-cC-
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMT------IYRAKGKH-MT-  277 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~------~~~~~g~~-rt-  277 (301)
                      ++++-.+||+++++++..+|+.+.+.+.||+.|++ |.+.++.. .+ .........-++-.      |....-.. ++ 
T Consensus       182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~-d~~~~~~~-~~-~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~  258 (310)
T 2uyo_A          182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAV-ETSPLHGD-EW-REQMQLRFRRVSDALGFEQAVDVQELIYHDEN  258 (310)
T ss_dssp             EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEE-ECCCTTCS-HH-HHHHHHHHHHHHC-----------CCTTCCTT
T ss_pred             EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEE-EecCCCCc-ch-hHHHHHHHHHHHHHcCCcCCCCccccccCCCC
Confidence            88888999999999999999999998888886654 55544321 11 00000000000000      00001112 25 


Q ss_pred             HHHHHHHHHhCCCCceEEEE
Q 043063          278 EQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       278 ~~e~~~~l~~aGf~~~~~~~  297 (301)
                      .++..++|.+.||+.+ .+.
T Consensus       259 ~~~~~~~f~~~G~~~~-~~~  277 (310)
T 2uyo_A          259 RAVVADWLNRHGWRAT-AQS  277 (310)
T ss_dssp             CCCHHHHHTTTTEEEE-EEE
T ss_pred             hHHHHHHHHHCcCccc-cCC
Confidence            7899999999999887 443

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=96.64  E-value=0.00083  Score=58.22  Aligned_cols=84  Identities=18%  Similarity=0.237  Sum_probs=59.4

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCC---c-ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIP---A-ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p---~-~D~v  207 (301)
                      .++++||-||||.|               +++|+ |.|++.+++           .+|++++.+|.+.-+.   . .|+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            35789999999996               45677 788876643           4799999999987632   2 4988


Q ss_pred             eHhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          208 FMKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       208 ~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +.=..= .....   -...+++.++++|+|||.+++.-.
T Consensus       162 i~D~~d-p~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          162 ISDCTD-PIGPGESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EESCCC-CCCTTCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeCCC-cCCCchhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            753221 11111   124789999999999999887643

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=96.63  E-value=0.0014  Score=56.39  Aligned_cols=75  Identities=8%  Similarity=-0.001  Sum_probs=49.2

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC---CCceeEEeCCCCcc-CCc--ccEeeHh
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS---IPGVTHIGGDMFKS-IPA--ADAIFMK  210 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~---~~ri~~~~gd~~~~-~p~--~D~v~~~  210 (301)
                      +++..+ .... +|||||||+|             +.+|+ +.+++.+++   ..+++++.+|+.+. ++.  ....+++
T Consensus        39 Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~~iv~  116 (271)
T 3fut_A           39 IVEAAR-PFTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGSLLVA  116 (271)
T ss_dssp             HHHHHC-CCCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTEEEEE
T ss_pred             HHHhcC-CCCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCccEEEe
Confidence            444443 5556 9999999996             56787 666665543   36899999999874 553  2234455


Q ss_pred             hhhccCChHHHHHHHHH
Q 043063          211 WVLTTWTDDECKLIMEN  227 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~  227 (301)
                      +.-++.+.+-..++|..
T Consensus       117 NlPy~iss~il~~ll~~  133 (271)
T 3fut_A          117 NLPYHIATPLVTRLLKT  133 (271)
T ss_dssp             EECSSCCHHHHHHHHHH
T ss_pred             cCcccccHHHHHHHhcC
Confidence            56666776555555554

>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0

Probab=96.59  E-value=0.0011  Score=48.82  Aligned_cols=62  Identities=21%  Similarity=0.164  Sum_probs=51.3

Q ss_pred             ccccccccCCCCCC--HHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063            8 DGGKKGRLANTPLS--ASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~g~~t--~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      ++-|+..|..|+.+  +.||++.+ |+    .+..+.+.|+.|...|+|++...  ..-.|++|+.++.+.
T Consensus        29 rl~IL~~L~~g~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~--r~~~y~LT~~G~~l~   93 (111)
T 3df8_A           29 TMLIISVLGNGSTRQNFNDIRSSIPGI----SSTILSRRIKDLIDSGLVERRSG--QITTYALTEKGMNVR   93 (111)
T ss_dssp             HHHHHHHHTSSSSCBCHHHHHHTSTTC----CHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHHHH
T ss_pred             HHHHHHHHhcCCCCCCHHHHHHHccCC----CHHHHHHHHHHHHHCCCEEEeec--CcEEEEECccHHHHH
Confidence            44567777778888  99999999 99    78999999999999999998731  134699999987665

>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69

Probab=96.58  E-value=0.0012  Score=48.30  Aligned_cols=63  Identities=22%  Similarity=0.172  Sum_probs=49.6

Q ss_pred             cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      +.|+..|..|+.+..||++.+ |+    ++..+.+.|+.|...|+|++.....  ..-.|.+|+.++.+.
T Consensus        17 ~~IL~~L~~~~~~~~eLa~~l~~i----s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~   82 (107)
T 2hzt_A           17 XVILXHLTHGKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   82 (107)
T ss_dssp             HHHHHHHTTCCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             HHHHHHHHhCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence            446667777899999999999 99    7999999999999999999874210  112599998876544

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.57  E-value=0.0015  Score=59.18  Aligned_cols=69  Identities=4%  Similarity=-0.089  Sum_probs=43.3

Q ss_pred             eeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCC--CCEEEE
Q 043063          175 FDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT-WT-DDECKLIMENCYKAIPA--GGKLIA  240 (301)
Q Consensus       175 ~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gg~lli  240 (301)
                      +|. |.+++.|++       .++|+++.+|+++. .+. .|+|++.--.+. .. +++...+.+.+.+.|++  |++++|
T Consensus       269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  348 (393)
T 3k0b_A          269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWSVYV  348 (393)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCCCCEEEE
Confidence            355 556655543       25799999999875 333 599998733321 12 24455666666666655  888887


Q ss_pred             ecc
Q 043063          241 CEP  243 (301)
Q Consensus       241 ~e~  243 (301)
                      +..
T Consensus       349 it~  351 (393)
T 3k0b_A          349 LTS  351 (393)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            755

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=96.51  E-value=0.0049  Score=55.64  Aligned_cols=95  Identities=12%  Similarity=0.027  Sum_probs=64.6

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCcee-----------------------------------------------------e
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAGI-----------------------------------------------------N  174 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g~-----------------------------------------------------~  174 (301)
                      +..++.... |.+...++|.+||+|+                                                     +
T Consensus       183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G  261 (384)
T 3ldg_A          183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG  261 (384)
T ss_dssp             HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred             HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence            344555553 8888999999999962                                                     2


Q ss_pred             eeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCC--CCEEEE
Q 043063          175 FDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT-WT-DDECKLIMENCYKAIPA--GGKLIA  240 (301)
Q Consensus       175 ~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gg~lli  240 (301)
                      +|. +.+++.|++       .++|++..+|+++. .+. .|+|++.--.+. +. .++...+.+.+.+.|++  |+++.|
T Consensus       262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  341 (384)
T 3ldg_A          262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLKTWSQFI  341 (384)
T ss_dssp             EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCTTSEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCCCcEEEE
Confidence            354 555555543       25799999999875 333 599998743332 33 35567788888888876  888887


Q ss_pred             ecc
Q 043063          241 CEP  243 (301)
Q Consensus       241 ~e~  243 (301)
                      +..
T Consensus       342 it~  344 (384)
T 3ldg_A          342 LTN  344 (384)
T ss_dssp             EES
T ss_pred             EEC
Confidence            765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=96.46  E-value=0.0025  Score=57.59  Aligned_cols=69  Identities=13%  Similarity=0.009  Sum_probs=45.3

Q ss_pred             eeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-ccEeeHhhhhcc-CC-hHHHHHHHHHHHHhCCC--CCEEEE
Q 043063          175 FDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTT-WT-DDECKLIMENCYKAIPA--GGKLIA  240 (301)
Q Consensus       175 ~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~-~~-d~~~~~iL~~~~~aL~p--gg~lli  240 (301)
                      +|. |.+++.|++       .++|+|..+|+++. .+. .|+|++.--.+. +. .++...+.+.+.+.|++  |+++.|
T Consensus       263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~g~~~~i  342 (385)
T 3ldu_A          263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLKNWSYYL  342 (385)
T ss_dssp             EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSBSCEEEE
T ss_pred             EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCCCCEEEE
Confidence            465 666666553       24799999999875 333 599998544332 22 34566777777777766  888777


Q ss_pred             ecc
Q 043063          241 CEP  243 (301)
Q Consensus       241 ~e~  243 (301)
                      +..
T Consensus       343 it~  345 (385)
T 3ldu_A          343 ITS  345 (385)
T ss_dssp             EES
T ss_pred             EEC
Confidence            754

>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A*

Probab=96.44  E-value=0.015  Score=51.40  Aligned_cols=133  Identities=15%  Similarity=0.135  Sum_probs=87.2

Q ss_pred             CcceEEeecCCc---------e-----ee--eehhHHHhhCC-----------------------------CCCceeEEe
Q 043063          160 GVKRLVDVGGSA---------G-----IN--FDLPEVVAEAP-----------------------------SIPGVTHIG  194 (301)
Q Consensus       160 ~~~~vlDvGgG~---------g-----~~--~Dlp~v~~~a~-----------------------------~~~ri~~~~  194 (301)
                      +...||-+|||.         +     ..  +|.|++++.=+                             ..++..+++
T Consensus        90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~  169 (334)
T 3iei_A           90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG  169 (334)
T ss_dssp             TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred             CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence            467899999998         1     23  36798765310                             146889999


Q ss_pred             CCCCcc--CC----------c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHH-hhhhhh
Q 043063          195 GDMFKS--IP----------A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQR-TRALLE  260 (301)
Q Consensus       195 gd~~~~--~p----------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~-~~~~~~  260 (301)
                      .|+.+.  ++          . .-++++--+|.+++.+++..+|+.+.+.. |+|.+++.|.+.+.++ .+.. ......
T Consensus       170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~d~-fg~~M~~~l~~  247 (334)
T 3iei_A          170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMGDR-FGQIMIENLRR  247 (334)
T ss_dssp             CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTTSH-HHHHHHHHHHT
T ss_pred             cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCCCH-HHHHHHHHHHH
Confidence            999762  21          1 14888888899999999999999999876 4567777898865431 0100 000001


Q ss_pred             ccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          261 GDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       261 ~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ....+.+  .  ....|.++..+.|.++||+.+++.++
T Consensus       248 ~g~pl~s--l--~~y~t~~~~~~r~~~~Gw~~~~~~d~  281 (334)
T 3iei_A          248 RQCDLAG--V--ETCKSLESQKERLLSNGWETASAVDM  281 (334)
T ss_dssp             TTCCCTT--G--GGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred             hCCCCcc--c--ccCCCHHHHHHHHHHcCCCcceeecH
Confidence            1111111  0  12247899999999999999887765

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=96.40  E-value=0.0011  Score=61.22  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=61.1

Q ss_pred             HhhhcCCCCCCcceEEeecCCcee----------------------------eeeh-hHHHhhCCC------CC--ceeE
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAGI----------------------------NFDL-PEVVAEAPS------IP--GVTH  192 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g~----------------------------~~Dl-p~v~~~a~~------~~--ri~~  192 (301)
                      .+++... .....+|+|.|||+|.                            ++|+ |.+++.|+.      ..  ++.+
T Consensus       162 ~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~i  240 (445)
T 2okc_A          162 AMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSPI  240 (445)
T ss_dssp             HHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCSE
T ss_pred             HHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCCE
Confidence            4444443 4456799999999962                            3354 445444432      12  6889


Q ss_pred             EeCCCCcc-CC-cccEeeHhhhhccCChH---------------HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          193 IGGDMFKS-IP-AADAIFMKWVLTTWTDD---------------ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       193 ~~gd~~~~-~p-~~D~v~~~~vlh~~~d~---------------~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..+|.+.. .. ..|+|++.--++.....               .-..+++++.+.|+|||++.++-+
T Consensus       241 ~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p  308 (445)
T 2okc_A          241 VCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP  308 (445)
T ss_dssp             EECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence            99999875 32 35999987655542211               124789999999999999877664

>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A

Probab=96.38  E-value=0.0029  Score=48.04  Aligned_cols=64  Identities=20%  Similarity=0.130  Sum_probs=50.9

Q ss_pred             cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccC--CCeEecChhchhhhc
Q 043063            9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGG--ERKYSLTEIGKSLVT   76 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~--~~~y~~t~~s~~l~~   76 (301)
                      +-|+..|..|+.+..||++.+ |+    .+..|.+.|+.|...|+|++......  .-.|++|+.++.|..
T Consensus        29 l~IL~~L~~g~~rf~eL~~~l~gI----s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~   95 (131)
T 4a5n_A           29 GILFYHMIDGKKRFNEFRRICPSI----TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEP   95 (131)
T ss_dssp             HHHHHHHTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHH
T ss_pred             HHHHHHHhcCCcCHHHHHHHhccc----CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHH
Confidence            345566667999999999999 99    79999999999999999998742100  125999999987653

>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}

Probab=96.38  E-value=0.001  Score=57.32  Aligned_cols=55  Identities=9%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++.-+.|+|+.|+..|+|.++    .+++|++++..
T Consensus        33 l~IL~~l~~~~~~ltl~eia~~lgl----~ksTv~RlL~tL~~~G~v~~~----~~~~Y~LG~~~   89 (275)
T 3mq0_A           33 VRILDLVAGSPRDLTAAELTRFLDL----PKSSAHGLLAVMTELDLLARS----ADGTLRIGPHS   89 (275)
T ss_dssp             HHHHHHHHHCSSCEEHHHHHHHHTC----C--CHHHHHHHHHHTTSEEEC----TTSEEEECTHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----CCCcEEehHHH
Confidence            456777763  57999999999999    788999999999999999998    35789999854

>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}

Probab=96.35  E-value=0.0016  Score=55.55  Aligned_cols=57  Identities=14%  Similarity=0.106  Sum_probs=48.4

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++.-+.|+|+.|+..|++.+++   ..++|++++..-
T Consensus         9 l~IL~~l~~~~~~lsl~eia~~lgl----~ksT~~RlL~tL~~~G~v~~~~---~~~~Y~lG~~~~   67 (260)
T 3r4k_A            9 LTLLTYFNHGRLEIGLSDLTRLSGM----NKATVYRLMSELQEAGFVEQVE---GARSYRLGPQVL   67 (260)
T ss_dssp             HHHHTTCBTTBSEEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEECS---SSSEEEECTTHH
T ss_pred             HHHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEcC---CCCcEEcCHHHH
Confidence            457788874  67999999999999    7999999999999999999983   237999998543

>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A

Probab=96.34  E-value=0.0011  Score=48.53  Aligned_cols=59  Identities=19%  Similarity=0.089  Sum_probs=47.3

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .++.|+..|..++.|+.+||+.+|+    ++..+.+.|+.|...|+|...+.+ ....|++++.
T Consensus        26 ~r~~IL~~L~~~~~s~~eLa~~lgi----s~stvs~~L~~L~~~GlV~~~~~g-r~~~y~l~~~   84 (108)
T 2kko_A           26 RRLQILDLLAQGERAVEAIATATGM----NLTTASANLQALKSGGLVEARREG-TRQYYRIAGE   84 (108)
T ss_dssp             TTHHHHHHHTTCCEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEEET-TEEEEEESCH
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence            4567888888889999999999999    789999999999999999876411 1224777654

>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19

Probab=96.27  E-value=0.00088  Score=45.90  Aligned_cols=56  Identities=13%  Similarity=0.192  Sum_probs=45.1

Q ss_pred             ccccccccCC-C---CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            8 DGGKKGRLAN-T---PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         8 ~lglf~~L~~-g---~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      +..|++.|.. +   +.|+.|||+++|+    +...+++.|+.|...|+|...+  +.++.|..++
T Consensus        16 ~~~IL~~L~~~~~~~~~t~~eLA~~Lgv----s~~tV~~~L~~L~~~G~I~~~g--~~~~~W~i~~   75 (77)
T 1qgp_A           16 EQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA--GTPPLWKIAV   75 (77)
T ss_dssp             HHHHHHHHHHHCSSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHHTSEEEEC--SSSCEEEECC
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC--CCCCceEecC
Confidence            3456666764 5   7899999999999    7889999999999999998863  1356888765

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=96.27  E-value=0.001  Score=59.86  Aligned_cols=75  Identities=16%  Similarity=0.108  Sum_probs=50.6

Q ss_pred             cceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---C---------------
Q 043063          161 VKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---P---------------  202 (301)
Q Consensus       161 ~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p---------------  202 (301)
                      ..+|||+|||+|             +.+|. |.+++.|++      .++++|+.+|..+..   +               
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~  293 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKS  293 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccccc
Confidence            367999999996             46787 777776653      258999999987532   1               


Q ss_pred             -cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          203 -AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       203 -~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                       ..|+|++.     -|..   .+.+++.+.|+++|+++.+.+
T Consensus       294 ~~fD~Vv~d-----PPr~---g~~~~~~~~l~~~g~ivyvsc  327 (369)
T 3bt7_A          294 YQCETIFVD-----PPRS---GLDSETEKMVQAYPRILYISC  327 (369)
T ss_dssp             CCEEEEEEC-----CCTT---CCCHHHHHHHTTSSEEEEEES
T ss_pred             CCCCEEEEC-----cCcc---ccHHHHHHHHhCCCEEEEEEC
Confidence             24888642     2221   334555666778998887765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=96.25  E-value=0.0021  Score=54.76  Aligned_cols=50  Identities=18%  Similarity=0.260  Sum_probs=37.1

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS  200 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~  200 (301)
                      .+++..+ ..+..+|||||||+|             +.+|. +.+++.+++    .++++++.+|+.+.
T Consensus        20 ~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~   87 (255)
T 3tqs_A           20 KIVSAIH-PQKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQF   87 (255)
T ss_dssp             HHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTC
T ss_pred             HHHHhcC-CCCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhC
Confidence            3444443 566789999999996             56787 777766543    47999999999874

>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A

Probab=96.19  E-value=0.0026  Score=43.94  Aligned_cols=61  Identities=11%  Similarity=0.171  Sum_probs=45.3

Q ss_pred             ccccccccCC-C---CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063            8 DGGKKGRLAN-T---PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL   74 (301)
Q Consensus         8 ~lglf~~L~~-g---~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l   74 (301)
                      +..|++.|.+ +   ++|+.+||+++|+    ....+++.|+.|...|+|+..+  +.++.|.+.+....+
T Consensus        12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgv----sr~tV~~~L~~Le~~G~I~~~g--~~~~~W~i~~~~~~~   76 (81)
T 1qbj_A           12 EQRILKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA--GTPPLWKIAVSTQAW   76 (81)
T ss_dssp             HHHHHHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES--SSSCEEEEC------
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEecC--CCCCeeEEeCcHHhc
Confidence            4456777764 5   7899999999999    7889999999999999998763  135788888765433

>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}

Probab=96.18  E-value=0.0011  Score=49.45  Aligned_cols=60  Identities=15%  Similarity=0.225  Sum_probs=49.2

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      .++.|+..|..||.|+.+||+.+|+    .+..+.+.|+.|...|+|...+.+ ..-.|++++.+
T Consensus        19 ~R~~Il~~L~~~~~~~~eLa~~l~i----s~~tvs~hL~~L~~~GlV~~~~~g-r~~~y~l~~~~   78 (118)
T 3f6o_A           19 TRRAVLGRLSRGPATVSELAKPFDM----ALPSFMKHIHFLEDSGWIRTHKQG-RVRTCAIEKEP   78 (118)
T ss_dssp             HHHHHHHHHHTCCEEHHHHHTTCCS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHhCc----CHHHHHHHHHHHHHCCCeEEEecC-CEEEEEECHHH
Confidence            4677888888899999999999999    788999999999999999876421 22358888754

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.13  E-value=0.0067  Score=51.70  Aligned_cols=37  Identities=11%  Similarity=0.201  Sum_probs=26.6

Q ss_pred             ccEeeHhhhhc---cCChH-HHHHHHHHHHHhCCCC-CEEEE
Q 043063          204 ADAIFMKWVLT---TWTDD-ECKLIMENCYKAIPAG-GKLIA  240 (301)
Q Consensus       204 ~D~v~~~~vlh---~~~d~-~~~~iL~~~~~aL~pg-g~lli  240 (301)
                      .|+|++-...+   .+-|. ....+|+.+.+.|+|| |.+++
T Consensus       141 ~DlVlsD~apnsG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~  182 (277)
T 3evf_A          141 CDTLLCDIGESSSSSVTEGERTVRVLDTVEKWLACGVDNFCV  182 (277)
T ss_dssp             CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             ccEEEecCccCcCchHHHHHHHHHHHHHHHHHhCCCCCeEEE
Confidence            59999876554   12232 2345789999999999 98887

>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}

Probab=96.06  E-value=0.0047  Score=52.53  Aligned_cols=58  Identities=17%  Similarity=0.083  Sum_probs=49.8

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++.-+.|+|+.|+..|++.++     ++.|++++....|.
T Consensus        17 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~~L~~~G~v~~~-----~~~Y~Lg~~~~~l~   76 (257)
T 2g7u_A           17 FAVLLAFDAQRPNPTLAELATEAGL----SRPAVRRILLTLQKLGYVAGS-----GGRWSLTPRVLSIG   76 (257)
T ss_dssp             HHHHHTCSSSCSSCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECGGGHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeC-----CCEEEEcHHHHHHH
Confidence            457788864  68999999999999    789999999999999999987     58999998765454

>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}

Probab=96.06  E-value=0.0013  Score=48.44  Aligned_cols=61  Identities=18%  Similarity=0.134  Sum_probs=48.4

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      .++.|+..|..++.|..+||+.+|+    ++..+.+.|+.|...|++.+.+.+ ....|.+|+.+.
T Consensus        22 ~r~~IL~~L~~~~~~~~ela~~l~i----s~~tv~~~l~~L~~~gli~~~~~g-r~~~y~l~~~~~   82 (114)
T 2oqg_A           22 TRWEILTELGRADQSASSLATRLPV----SRQAIAKHLNALQACGLVESVKVG-REIRYRALGAEL   82 (114)
T ss_dssp             HHHHHHHHHHHSCBCHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECSHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeEEecC-CEEEEEechHHH
Confidence            4566788885589999999999999    788999999999999999876311 122488887653

>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69

Probab=96.02  E-value=0.003  Score=48.94  Aligned_cols=63  Identities=17%  Similarity=0.098  Sum_probs=49.1

Q ss_pred             cccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc-CCCeEecChhchhhh
Q 043063            9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG-GERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~y~~t~~s~~l~   75 (301)
                      +-|+..|..|+.+..||++.+|+    .+..+.+.|+.|...|+|++..... ..-.|++|+.++.+.
T Consensus        27 l~IL~~L~~g~~~~~eLa~~lgi----s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~   90 (146)
T 2f2e_A           27 MLIVRDAFEGLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF   90 (146)
T ss_dssp             HHHHHHHHTTCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred             HHHHHHHHhCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHH
Confidence            33555665689999999999999    7999999999999999999874210 013699999876554

>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}

Probab=96.01  E-value=0.0046  Score=52.72  Aligned_cols=55  Identities=11%  Similarity=0.074  Sum_probs=47.2

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++.-+.|+|+.|...|++.+++    +++|++++..
T Consensus        26 l~iL~~l~~~~~~~~~~eia~~~gl----~kstv~r~l~tL~~~G~v~~~~----~~~Y~lg~~~   82 (260)
T 2o0y_A           26 IDLLELFDAAHPTRSLKELVEGTKL----PKTTVVRLVATMCARSVLTSRA----DGSYSLGPEM   82 (260)
T ss_dssp             HHHHTTCBTTBSSBCHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEECT----TSCEEECHHH
T ss_pred             HHHHHHHhhCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC----CCeEEecHHH
Confidence            457788863  68999999999999    7899999999999999999983    4489998854

>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19

Probab=95.96  E-value=0.0027  Score=43.74  Aligned_cols=61  Identities=8%  Similarity=0.005  Sum_probs=48.4

Q ss_pred             cccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            5 ECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         5 ~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.....|++.|...+.|+.+||+++|+    .+..+++.|+.|...|+|....  +.+-.|+++..+
T Consensus        16 ~~~~~~IL~lL~~~g~sa~eLAk~Lgi----Sk~aVr~~L~~Le~eG~I~~~~--~~PP~W~~~~~~   76 (82)
T 1oyi_A           16 AEIVCEAIKTIGIEGATAAQLTRQLNM----EKREVNKALYDLQRSAMVYSSD--DIPPRWFMTTEA   76 (82)
T ss_dssp             HHHHHHHHHHHSSSTEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEECS--SSSCEEESCC--
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeCC--CCCCcceeccCc
Confidence            345667888888755999999999999    7899999999999999999873  234578887654

>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69

Probab=95.93  E-value=0.0019  Score=49.09  Aligned_cols=63  Identities=17%  Similarity=0.086  Sum_probs=49.7

Q ss_pred             cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      +-|+..|..|+.+..+|++.+ |+    ++..+.+.|+.|...|+|.+.....  ..-.|.+|+.++.+.
T Consensus        38 l~IL~~L~~g~~~~~eLa~~l~gi----s~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~  103 (131)
T 1yyv_A           38 VLILVALRDGTHRFSDLRRXMGGV----SEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS  103 (131)
T ss_dssp             HHHHHHGGGCCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHH
Confidence            345666767899999999999 79    7999999999999999999874210  112699999887654

>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A

Probab=95.91  E-value=0.0022  Score=46.67  Aligned_cols=59  Identities=20%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .++.|+..|..++.|+.+||+.+|+    ++..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus        27 ~r~~IL~~L~~~~~~~~ela~~l~i----s~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~   85 (106)
T 1r1u_A           27 NRIRIMELLSVSEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQG-QSMIYSLDDI   85 (106)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence            4567788887788999999999999    788999999999999999876411 1124666653

>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A

Probab=95.87  E-value=0.0041  Score=46.58  Aligned_cols=58  Identities=19%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      ++.|+..|.+++.++.+||+.+|+    .+..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus        48 rl~IL~~L~~~~~s~~ela~~lgi----s~stvs~~L~~Le~~Glv~~~~~g-r~~~y~l~~~  105 (122)
T 1r1t_A           48 RLRLLSLLARSELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQG-RHVYYQLQDH  105 (122)
T ss_dssp             HHHHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESSH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeC-CEEEEEEChH
Confidence            567888888889999999999999    788999999999999999876411 1124666654

>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69

Probab=95.87  E-value=0.0027  Score=46.31  Aligned_cols=63  Identities=16%  Similarity=0.138  Sum_probs=49.2

Q ss_pred             cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      +.|+..|..|+.+..||++.+ |+    ++..+.+.|+.|...|+|++.....  ..-.|.+|+.++.+.
T Consensus        28 ~~IL~~L~~~~~~~~eL~~~l~gi----s~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~   93 (107)
T 2fsw_A           28 LLIIFQINRRIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL   93 (107)
T ss_dssp             HHHHHHHTTSCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred             HHHHHHHHhCCcCHHHHHHHcccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHH
Confidence            345666767899999999999 49    7999999999999999999874210  012599999886554

>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}

Probab=95.87  E-value=0.0041  Score=53.15  Aligned_cols=54  Identities=13%  Similarity=0.036  Sum_probs=47.4

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++.-+.|+|+.|+..|++.++     +++|++++..
T Consensus        24 l~iL~~l~~~~~~~~~~eia~~~gl----~~stv~r~l~tL~~~G~v~~~-----~~~Y~Lg~~~   79 (265)
T 2ia2_A           24 LAVIRCFDHRNQRRTLSDVARATDL----TRATARRFLLTLVELGYVATD-----GSAFWLTPRV   79 (265)
T ss_dssp             HHHHHTCCSSCSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEES-----SSEEEECGGG
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEec-----CCEEEEcHHH
Confidence            457788863  68999999999999    789999999999999999987     5899998854

>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}

Probab=95.86  E-value=0.0036  Score=44.55  Aligned_cols=60  Identities=15%  Similarity=0.080  Sum_probs=47.2

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      .++.|+..|.. ++.|..+||+.+|+    ++..+.+.|+.|...|++.+.+.+ ....|.+|+.+
T Consensus        25 ~~~~il~~l~~~~~~s~~ela~~l~i----s~~tvs~~l~~L~~~glv~~~~~~-r~~~y~l~~~~   85 (99)
T 3cuo_A           25 KRLLILCMLSGSPGTSAGELTRITGL----SASATSQHLARMRDEGLIDSQRDA-QRILYSIKNEA   85 (99)
T ss_dssp             HHHHHHHHHTTCCSEEHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECS-SCEEEEECCHH
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHH
Confidence            45567788876 48999999999999    788999999999999999987411 12347777654

>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A

Probab=95.81  E-value=0.003  Score=47.27  Aligned_cols=58  Identities=22%  Similarity=0.148  Sum_probs=46.0

Q ss_pred             ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      ++.|+..|. .++.|+.+||+.+|+    .+..+.+.|+.|...|++...+.+ ..-.|++++.
T Consensus        44 rl~IL~~L~~~~~~s~~eLa~~l~i----s~stvs~~L~~L~~~Glv~~~~~g-r~~~y~l~~~  102 (122)
T 1u2w_A           44 RAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEG-KLALYSLGDE  102 (122)
T ss_dssp             HHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCH
T ss_pred             HHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEEC-CEEEEEECHH
Confidence            567888887 689999999999999    788999999999999999876311 1225777764

>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}

Probab=95.80  E-value=0.0023  Score=49.90  Aligned_cols=61  Identities=16%  Similarity=0.206  Sum_probs=50.0

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhch
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGK   72 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~   72 (301)
                      .++.|+..|..++.|+.+||+.+|+    .+..+.+.|+.|...|+|...+.+ ..-.|++|+.+.
T Consensus        59 ~R~~IL~~L~~~~~t~~eLa~~lgl----s~stvs~hL~~L~~aGlV~~~~~G-r~~~y~lt~~~~  119 (151)
T 3f6v_A           59 TRRRLVQLLTSGEQTVNNLAAHFPA----SRSAISQHLRVLTEAGLVTPRKDG-RFRYYRLDPQGL  119 (151)
T ss_dssp             HHHHHHHHGGGCCEEHHHHHTTSSS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecC-CEEEEEEChHHH
Confidence            3677888898899999999999999    788999999999999999977411 123588887653

>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A

Probab=95.75  E-value=0.0033  Score=52.96  Aligned_cols=59  Identities=17%  Similarity=0.083  Sum_probs=48.1

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhh
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL   74 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l   74 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++..+.|+|+.|+..|++.+++   ..++|++++....|
T Consensus         9 l~iL~~l~~~~~~~s~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~~---~~~~Y~lg~~~~~l   69 (241)
T 2xrn_A            9 ASIMRALGSHPHGLSLAAIAQLVGL----PRSTVQRIINALEEEFLVEALG---PAGGFRLGPALGQL   69 (241)
T ss_dssp             HHHHHHHHTCTTCEEHHHHHHHTTS----CHHHHHHHHHHHHTTTSEEECG---GGCEEEECSHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---CCCeEEECHHHHHH
Confidence            346677754  47999999999999    7999999999999999999873   23789999865433

>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}

Probab=95.72  E-value=0.0043  Score=42.82  Aligned_cols=49  Identities=16%  Similarity=0.209  Sum_probs=41.9

Q ss_pred             cccccccccccCC---CCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            5 ECRDGGKKGRLAN---TPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         5 ~a~~lglf~~L~~---g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      |.-+..|++.|..   ++.|++||++.+     ++    +..-+.|.|+.|+..|+|.+..
T Consensus        16 t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~i----s~~TVyR~L~~L~~~Glv~~~~   72 (83)
T 2fu4_A           16 TLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEI----GLATVYRVLNQFDDAGIVTRHN   72 (83)
T ss_dssp             CHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCeEEEe
Confidence            4445678888874   589999999999     88    7889999999999999999874

>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69

Probab=95.63  E-value=0.0025  Score=46.91  Aligned_cols=63  Identities=16%  Similarity=0.111  Sum_probs=49.4

Q ss_pred             cccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            9 GGKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      +.|+..|..++.+..+||+.+ ++    ++..+.+.|+.|...|+|.+.....  ..-.|.+|+.++.+.
T Consensus        25 ~~IL~~L~~~~~~~~eLa~~l~~i----s~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~~   90 (112)
T 1z7u_A           25 LSLMDELFQGTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY   90 (112)
T ss_dssp             HHHHHHHHHSCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHhccC----CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHHH
Confidence            345566666899999999999 99    7999999999999999999874210  112499999887654

>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}

Probab=95.50  E-value=0.0047  Score=52.14  Aligned_cols=63  Identities=14%  Similarity=0.266  Sum_probs=52.0

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      ..+.|+..|.. ++.|..+||+.+|+    ++..+.|.|+.|...|++++.+   ....|++|+.+..+..
T Consensus       153 ~~~~IL~~L~~~~~~s~~eLA~~lgl----sksTv~r~L~~Le~~GlV~r~~---r~~~~~LT~~G~~l~~  216 (244)
T 2wte_A          153 EEMKLLNVLYETKGTGITELAKMLDK----SEKTLINKIAELKKFGILTQKG---KDRKVELNELGLNVIK  216 (244)
T ss_dssp             HHHHHHHHHHHHTCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET---TTTEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC---CccEEEECHHHHHHHH
Confidence            34556677653 78999999999999    7999999999999999999873   3568999999876643

>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73

Probab=95.47  E-value=0.0048  Score=42.47  Aligned_cols=56  Identities=14%  Similarity=0.038  Sum_probs=42.5

Q ss_pred             ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc-cCCCeEecCh
Q 043063           10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF-GGERKYSLTE   69 (301)
Q Consensus        10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~-~~~~~y~~t~   69 (301)
                      .|++.|.. ++.|..|||+.+|+    .+..+++.|+.|...|++.+.... +....|.++.
T Consensus         4 ~Il~~L~~~~~~s~~eLa~~lgv----s~~tv~r~L~~L~~~GlI~~~~~~~gr~~~y~l~~   61 (81)
T 2htj_A            4 EILEFLNRHNGGKTAEIAEALAV----TDYQARYYLLLLEKAGMVQRSPLRRGMATYWFLKG   61 (81)
T ss_dssp             HHHHHHHHSCCCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEECCSSSSSCEEEESS
T ss_pred             HHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeccCCCCcEEEEECh
Confidence            46666654 78999999999999    788999999999999999854211 1233566554

>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2

Probab=95.46  E-value=0.0052  Score=51.96  Aligned_cols=55  Identities=13%  Similarity=0.084  Sum_probs=46.6

Q ss_pred             cccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.|..  ++.|+.|||+++|+    ++..+.|+|+.|+..|++.++    ..+.|++++..
T Consensus        11 l~iL~~l~~~~~~~~~~ela~~~gl----~~stv~r~l~~L~~~G~v~~~----~~~~Y~lg~~~   67 (249)
T 1mkm_A           11 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----KDKRYVPGYKL   67 (249)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----TTSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEC----CCCcEEECHHH
Confidence            356677753  47999999999999    789999999999999999987    36789998854

>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48

Probab=95.45  E-value=0.0062  Score=43.46  Aligned_cols=66  Identities=18%  Similarity=0.223  Sum_probs=51.5

Q ss_pred             ccccccccccCC-CCCCHHHH----HHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063            6 CRDGGKKGRLAN-TPLSASQI----LTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus         6 a~~lglf~~L~~-g~~t~~el----a~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      ..++.++..|.. ++.|..+|    |+.+++    ++..+.++|+.|...|++.+.... ....|.+|+.++.+..
T Consensus         8 ~~q~~iL~~l~~~~~~~~~el~~~la~~l~i----s~~tvs~~l~~Le~~gli~r~~~~-r~~~~~LT~~G~~~~~   78 (99)
T 1tbx_A            8 YPEAIVLAYLYDNEGIATYDLYKKVNAEFPM----STATFYDAKKFLIQEGFVKERQER-GEKRLYLTEKGKLFAI   78 (99)
T ss_dssp             CHHHHHHHHHTTCTTCBHHHHHHHHHTTSCC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcCHHHHHHHHHHHcCC----CHHHHHHHHHHHHHCCCEEEEecC-CceEEEECHHHHHHHH
Confidence            345567777765 78999999    899999    799999999999999999986311 1235888988876553

>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*

Probab=95.40  E-value=0.018  Score=43.93  Aligned_cols=50  Identities=16%  Similarity=0.163  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      ++.|..+||+.+++    ++..+.+.|+.|...|+|.+.+    ...|.+|+.+..+.
T Consensus        21 ~~~~~~ela~~l~v----s~~tvs~~l~~Le~~Glv~r~~----~~~~~LT~~g~~~~   70 (142)
T 1on2_A           21 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYEK----YRGLVLTSKGKKIG   70 (142)
T ss_dssp             SSCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEee----CceEEEchhHHHHH
Confidence            78999999999999    7999999999999999999883    57899999886554

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=95.39  E-value=0.019  Score=50.15  Aligned_cols=87  Identities=13%  Similarity=0.122  Sum_probs=52.9

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccC---C---cccEee
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSI---P---AADAIF  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~---p---~~D~v~  208 (301)
                      ..+..+|||+|||+|                +.+|. +..++.+++      ..+|+++.+|+.+..   +   ..|.|+
T Consensus       100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl  179 (309)
T 2b9e_A          100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL  179 (309)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence            456789999999995                45687 666655442      257999999987531   1   248888


Q ss_pred             H------hhhhcc---------CChHH-------HHHHHHHHHHhCCCCCEEEEecccc
Q 043063          209 M------KWVLTT---------WTDDE-------CKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       209 ~------~~vlh~---------~~d~~-------~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +      ..++..         |+.++       ..++|+++.+.++ ||+|+...+..
T Consensus       180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~  237 (309)
T 2b9e_A          180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSL  237 (309)
T ss_dssp             ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCC
T ss_pred             EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCC
Confidence            6      122221         11111       1357888887776 88877665544

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.37  E-value=0.0038  Score=53.82  Aligned_cols=49  Identities=16%  Similarity=0.245  Sum_probs=35.2

Q ss_pred             hhhcCCCCCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS  200 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~  200 (301)
                      +++..+ .....+|||||||+|                 +++|+ +.+++.+++  .++++++.+|+.+.
T Consensus        34 iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~  102 (279)
T 3uzu_A           34 IVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTF  102 (279)
T ss_dssp             HHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGC
T ss_pred             HHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcC
Confidence            444443 556789999999995                 23566 667766654  36899999999864

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=95.35  E-value=0.0084  Score=51.01  Aligned_cols=86  Identities=10%  Similarity=0.204  Sum_probs=53.2

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-h-------HHHhhCCCC-------CceeEEeCCCCcc---CC---c
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-P-------EVVAEAPSI-------PGVTHIGGDMFKS---IP---A  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p-------~v~~~a~~~-------~ri~~~~gd~~~~---~p---~  203 (301)
                      .....+|||+|||+|             +.+|. |       ..++.+++.       +||+++.+|+.+.   ++   .
T Consensus        81 ~~~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~  160 (258)
T 2r6z_A           81 HTAHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG  160 (258)
T ss_dssp             GGGCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred             cCCcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence            334578999999996             56787 6       666655432       5799999998763   33   3


Q ss_pred             -ccEeeHhhhhccCC------------------hHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          204 -ADAIFMKWVLTTWT------------------DDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       204 -~D~v~~~~vlh~~~------------------d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                       .|+|++.-.+++-.                  +.+...+++.+.+..+  .+++|..+..
T Consensus       161 ~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~--~~vvvk~p~~  219 (258)
T 2r6z_A          161 KPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAK--KRVVVKRPRL  219 (258)
T ss_dssp             CCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCS--SEEEEEEETT
T ss_pred             CccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcC--cEEEEEcCCC
Confidence             59998854443211                  1233455666666542  3677766544

>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}

Probab=95.20  E-value=0.02  Score=43.00  Aligned_cols=47  Identities=23%  Similarity=0.257  Sum_probs=38.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      ++.|..+||+.+|+    ++..++++|+.|...|++...+  |..|.|+++.-
T Consensus        25 ~~~s~~ela~~~~i----~~~~v~~il~~L~~~Glv~~~~--g~~ggy~L~~~   71 (129)
T 2y75_A           25 GPTSLKSIAQTNNL----SEHYLEQLVSPLRNAGLVKSIR--GAYGGYVLGSE   71 (129)
T ss_dssp             CCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESSC
T ss_pred             CcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEecC--CCCCceEeCCC
Confidence            57899999999999    7999999999999999998763  12467888764

>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28

Probab=95.14  E-value=0.0038  Score=44.44  Aligned_cols=63  Identities=19%  Similarity=0.135  Sum_probs=48.9

Q ss_pred             cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchh
Q 043063            7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKS   73 (301)
Q Consensus         7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~   73 (301)
                      .++.|+..|. .++.|..+||+.+|+    ++..+.+.|+.|...|++.+....  +....|.+|+.+..
T Consensus        17 ~~~~iL~~L~~~~~~~~~ela~~l~i----s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~   82 (100)
T 1ub9_A           17 VRLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME   82 (100)
T ss_dssp             HHHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred             HHHHHHHHHHhcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHH
Confidence            4566788785 478999999999999    788999999999999999965210  01235888887753

>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}

Probab=95.06  E-value=0.025  Score=44.32  Aligned_cols=47  Identities=23%  Similarity=0.317  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      +|.|.++||+..++    ++..++++|..|...|+|...+  |.+|.|+++.-
T Consensus        43 ~~~s~~eIA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~   89 (159)
T 3lwf_A           43 GPISLRSIAQDKNL----SEHYLEQLIGPLRNAGIVKSIR--GAHGGYVLNGD   89 (159)
T ss_dssp             CCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--STTCEEEECSC
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCeEEEec--CCCCceEecCC
Confidence            57999999999999    8999999999999999999774  23567998753

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=94.98  E-value=0.0063  Score=42.51  Aligned_cols=42  Identities=17%  Similarity=0.193  Sum_probs=38.1

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |.+.|.. |.+|++|||+.+++    .+.-+++.|+.|...|+|.+.
T Consensus         7 Il~~L~~~g~vsv~eLA~~l~V----S~~TIRrDL~~Le~~G~l~R~   49 (87)
T 2k02_A            7 VRDMLALQGRMEAKQLSARLQT----PQPLIDAMLERMEAMGKVVRI   49 (87)
T ss_dssp             HHHHHHHSCSEEHHHHHHHTTC----CHHHHHHHHHHHHTTCCSEEE
T ss_pred             HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            5666764 89999999999999    799999999999999999988

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=94.94  E-value=0.0071  Score=41.38  Aligned_cols=42  Identities=19%  Similarity=0.170  Sum_probs=38.0

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |.+.|.. |.++++|||+.+++    .+.-+++-|..|...|++.+.
T Consensus         7 Il~~L~~~g~vsv~eLa~~l~V----S~~TIRrdL~~Le~~G~l~R~   49 (78)
T 1xn7_A            7 VRDLLALRGRMEAAQISQTLNT----PQPMINAMLQQLESMGKAVRI   49 (78)
T ss_dssp             HHHHHHHSCSBCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHcCCCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEe
Confidence            5566764 89999999999999    799999999999999999987

>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}

Probab=94.83  E-value=0.03  Score=42.43  Aligned_cols=50  Identities=12%  Similarity=0.131  Sum_probs=44.1

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .++.|..+||+.+++    ++..+.+.|+.|...|+|.+.     ...|.+|+.+..+.
T Consensus        29 ~~~~s~~ela~~l~i----s~~tv~~~l~~Le~~Gli~r~-----~~~~~Lt~~g~~~~   78 (139)
T 2x4h_A           29 GEGAKINRIAKDLKI----APSSVFEEVSHLEEKGLVKKK-----EDGVWITNNGTRSI   78 (139)
T ss_dssp             TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHhCC----ChHHHHHHHHHHHHCCCEEec-----CCeEEEChhHHHHH
Confidence            368899999999999    789999999999999999988     36899999886543

>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55

Probab=94.75  E-value=0.024  Score=43.81  Aligned_cols=47  Identities=13%  Similarity=0.156  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.|.++||+.+++    ++..++++|..|...|+|...+  | .|.|+++.-.
T Consensus        29 ~~~~~~~iA~~~~i----~~~~l~kil~~L~~~Glv~s~r--G-~GGy~L~~~p   75 (149)
T 1ylf_A           29 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR--G-PGGAGLLKDL   75 (149)
T ss_dssp             GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESSCG
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEcc--C-CCceEeCCCh
Confidence            57999999999999    8999999999999999998764  2 5678887653

>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A

Probab=94.75  E-value=0.03  Score=43.03  Aligned_cols=48  Identities=21%  Similarity=0.216  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.|.++||+.+++    ++..++++|..|...|+|...+  |.+|.|+++.-.
T Consensus        27 ~~~s~~~IA~~~~i----~~~~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~p   74 (143)
T 3t8r_A           27 GCISLKSIAEENNL----SDLYLEQLVGPLRNAGLIRSVR--GAKGGYQLRVPA   74 (143)
T ss_dssp             CCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECS--SSSSEEEESSCG
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCEEEecC--CCCCCeeecCCc
Confidence            47899999999999    8999999999999999998663  235789987643

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=94.75  E-value=0.016  Score=49.54  Aligned_cols=95  Identities=12%  Similarity=0.076  Sum_probs=53.7

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce---------------eeeehh-HHHhhCCC----C-CceeEEeC-CCCccCCc-c
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLP-EVVAEAPS----I-PGVTHIGG-DMFKSIPA-A  204 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp-~v~~~a~~----~-~ri~~~~g-d~~~~~p~-~  204 (301)
                      ..++.+.+ .+....+|||||||.|               +.+|+- .....+..    . +-+.+... |++...+. +
T Consensus        79 L~ei~eK~-~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~  157 (282)
T 3gcz_A           79 LRWMEERG-YVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFNMEVIPG  157 (282)
T ss_dssp             HHHHHHTT-SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhhcCCCCc
Confidence            34555566 3777789999999995               223441 11111111    1 22344443 44322223 5


Q ss_pred             cEeeHhhhhc----cCChHHHHHHHHHHHHhCCCC--CEEEEecc
Q 043063          205 DAIFMKWVLT----TWTDDECKLIMENCYKAIPAG--GKLIACEP  243 (301)
Q Consensus       205 D~v~~~~vlh----~~~d~~~~~iL~~~~~aL~pg--g~lli~e~  243 (301)
                      |+|++-...+    ..+......+|+-+.+.|+||  |.+++-=+
T Consensus       158 DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF  202 (282)
T 3gcz_A          158 DTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL  202 (282)
T ss_dssp             SEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred             CEEEecCccCCCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence            9998876655    111222346788889999999  98877433

>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}

Probab=94.68  E-value=0.019  Score=43.69  Aligned_cols=66  Identities=14%  Similarity=0.237  Sum_probs=48.2

Q ss_pred             ccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            6 CRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         6 a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ..++.|+..|..++.|..+||+.+++    ++..+.+.++.|...|+|.+.+..  +..-.|.+|+.+..+.
T Consensus        38 ~~~~~iL~~l~~~~~t~~eLa~~l~~----s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~  105 (146)
T 3tgn_A           38 NTQEHILMLLSEESLTNSELARRLNV----SQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA  105 (146)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence            34566777787755999999999999    799999999999999999986421  0112477787776544

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=94.68  E-value=0.05  Score=45.80  Aligned_cols=92  Identities=14%  Similarity=0.092  Sum_probs=52.3

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------------eeeehhHHHhhCCCCCce---eEEeC-CCCccCCc-c
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------------INFDLPEVVAEAPSIPGV---THIGG-DMFKSIPA-A  204 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------------~~~Dlp~v~~~a~~~~ri---~~~~g-d~~~~~p~-~  204 (301)
                      .++-+.+ -+++..+|||+||+.|                   +..|+ +..+.......+   +|..| ||++.-+. .
T Consensus        63 ~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~~  140 (269)
T 2px2_A           63 RWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEIS  140 (269)
T ss_dssp             HHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCCC
T ss_pred             HHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCCC
Confidence            3444444 3788899999999995                   11232 111111111344   55557 99875443 5


Q ss_pred             cEeeHhhhhccCC----hHH-HHHHHHHHHHhCCCCC-EEEEecc
Q 043063          205 DAIFMKWVLTTWT----DDE-CKLIMENCYKAIPAGG-KLIACEP  243 (301)
Q Consensus       205 D~v~~~~vlh~~~----d~~-~~~iL~~~~~aL~pgg-~lli~e~  243 (301)
                      |+|++=..- +-+    |.. ...+|.-+.+.|+||| .+++-=+
T Consensus       141 DvVLSDMAP-nSG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVF  184 (269)
T 2px2_A          141 DTLLCDIGE-SSPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKIL  184 (269)
T ss_dssp             SEEEECCCC-CCSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred             CEEEeCCCC-CCCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEEC
Confidence            988764422 211    111 2235667778999999 7777443

>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71

Probab=94.61  E-value=0.047  Score=38.77  Aligned_cols=54  Identities=31%  Similarity=0.348  Sum_probs=44.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      ++.+..+||+.+++    +...|.|.|..|...|++.+....+..+..++|+.++.+.
T Consensus        35 ~~~s~~eLa~~l~l----~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G~~~l   88 (96)
T 2obp_A           35 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   88 (96)
T ss_dssp             CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCC----chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHHHHHH
Confidence            67899999999999    8899999999999999999865432334577888876544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=94.61  E-value=0.028  Score=54.79  Aligned_cols=56  Identities=9%  Similarity=-0.072  Sum_probs=34.1

Q ss_pred             CceeEEeCCCCcc-CC----cccEeeHhhhhcc-CC-hHHHHHHHHHHHHh---CCCCCEEEEecc
Q 043063          188 PGVTHIGGDMFKS-IP----AADAIFMKWVLTT-WT-DDECKLIMENCYKA---IPAGGKLIACEP  243 (301)
Q Consensus       188 ~ri~~~~gd~~~~-~p----~~D~v~~~~vlh~-~~-d~~~~~iL~~~~~a---L~pgg~lli~e~  243 (301)
                      ++|+|..+|+.+. .|    ..|+|++.--... +. +++...+.+.+.+.   +.|||++.|+..
T Consensus       283 ~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ilt~  348 (703)
T 3v97_A          283 ELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQFGGWNLSLFSA  348 (703)
T ss_dssp             GGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred             CceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhhCCCCeEEEEeC
Confidence            5699999999864 23    3499888733221 22 33445555544444   458998888754

>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A

Probab=94.57  E-value=0.018  Score=43.83  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|..++.|..+||+.+++    ++..+.+.++.|...|+|.+.+..  ...-.+.+|+.++.+.
T Consensus        38 ~~~~iL~~l~~~~~~~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~~~  104 (146)
T 2gxg_A           38 LDFLVLRATSDGPKTMAYLANRYFV----TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLETF  104 (146)
T ss_dssp             HHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhcCCcCHHHHHHHhCC----CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHHHH
Confidence            3445566666678999999999999    799999999999999999976321  0112477888776554

>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}

Probab=94.55  E-value=0.019  Score=44.32  Aligned_cols=65  Identities=14%  Similarity=0.216  Sum_probs=49.7

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|+|.+....  +..-.+.+|+.++.+.
T Consensus        44 ~~~~iL~~l~~~~~~t~~ela~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  111 (155)
T 3cdh_A           44 PEWRVLACLVDNDAMMITRLAKLSLM----EQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRALA  111 (155)
T ss_dssp             HHHHHHHHHSSCSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHHH
Confidence            34556777765 78999999999999    799999999999999999976311  0112488888886654

>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0

Probab=94.54  E-value=0.046  Score=42.92  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=41.1

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++.|.++||+.+++    ++..++++|..|...|+++..+  |.+|.|++..-.
T Consensus        27 ~~~s~~~IA~~~~i----s~~~l~kil~~L~~aGlv~s~r--G~~GGy~Lar~p   74 (162)
T 3k69_A           27 SKVASRELAQSLHL----NPVMIRNILSVLHKHGYLTGTV--GKNGGYQLDLAL   74 (162)
T ss_dssp             SCBCHHHHHHHHTS----CGGGTHHHHHHHHHTTSSEEEC--STTCEEECCSCG
T ss_pred             CCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEeec--CCCCCeEecCCh
Confidence            57899999999999    8999999999999999998763  245679988644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=94.51  E-value=0.015  Score=49.18  Aligned_cols=51  Identities=18%  Similarity=0.259  Sum_probs=35.6

Q ss_pred             HHhhhcCCCCCCcceEEeecCCcee-------------eeeh-hHHHhhCCCC----CceeEEeCCCCcc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAGI-------------NFDL-PEVVAEAPSI----PGVTHIGGDMFKS  200 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g~-------------~~Dl-p~v~~~a~~~----~ri~~~~gd~~~~  200 (301)
                      ..+++..+ .....+|||||||+|.             .+|+ +.+++.+++.    ++++++.+|+.+.
T Consensus        11 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~l~~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~   79 (252)
T 1qyr_A           11 DSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTF   79 (252)
T ss_dssp             HHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGC
T ss_pred             HHHHHhcC-CCCcCEEEEECCCCcHHHHhhhCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhC
Confidence            34445553 5667799999999962             4566 6666665542    5899999999863

>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A

Probab=94.50  E-value=0.01  Score=45.10  Aligned_cols=64  Identities=16%  Similarity=0.149  Sum_probs=44.5

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|+|.+.+.. .+   -.+.+|+.++.+.
T Consensus        38 ~~~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~-~DrR~~~~~LT~~G~~~~  105 (142)
T 3ech_A           38 PDVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNP-SDQRSFQLFLTDEGLAIH  105 (142)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHC-------CHHHHHHHHHHHTTSEEC-----------CCEECHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEeeccCC-CCCCeeeeEECHHHHHHH
Confidence            34556666764 78999999999999    788999999999999999986421 11   1377888776554

>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A

Probab=94.25  E-value=0.017  Score=43.77  Aligned_cols=65  Identities=23%  Similarity=0.218  Sum_probs=49.6

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|+|++.+..  ...-.+.+|+.++.+.
T Consensus        37 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  104 (140)
T 3hsr_A           37 TGYIVLMAIENDEKLNIKKLGERVFL----DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKAIK  104 (140)
T ss_dssp             HHHHHHHHSCTTCEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHTH
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHHHH
Confidence            34556667764 78999999999999    899999999999999999987421  0112588888887654

>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A

Probab=94.24  E-value=0.048  Score=44.84  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=45.6

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .++.|..+||+.+++    ++..+.+.|+.|...|++.+.+    ...+.+|+.++.+.
T Consensus        18 ~~~~~~~~lA~~l~v----s~~tvs~~l~~Le~~GlV~r~~----~~~i~LT~~G~~~~   68 (214)
T 3hrs_A           18 HNKITNKEIAQLMQV----SPPAVTEMMKKLLAEELLIKDK----KAGYLLTDLGLKLV   68 (214)
T ss_dssp             CSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET----TTEEEECHHHHHHH
T ss_pred             CCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEEec----CCCeEECHHHHHHH
Confidence            378999999999999    7999999999999999999983    57899999987654

>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}

Probab=94.21  E-value=0.019  Score=44.74  Aligned_cols=64  Identities=17%  Similarity=0.139  Sum_probs=49.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~   76 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.++++.|+..|+|.+.+.. .+   -.+.+|+.++.+..
T Consensus        48 q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~~  115 (162)
T 3k0l_A           48 QFTALSVLAAKPNLSNAKLAERSFI----KPQSANKILQDLLANGWIEKAPDP-THGRRILVTVTPSGLDKLN  115 (162)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHTS----CGGGHHHHHHHHHHTTSEEEEECC-SSSCCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCeEecCCC-CcCCeeEeEECHhHHHHHH
Confidence            4456666654 78999999999999    899999999999999999987421 11   14888888876553

>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=94.19  E-value=0.024  Score=43.02  Aligned_cols=65  Identities=14%  Similarity=0.082  Sum_probs=49.3

Q ss_pred             ccccccccc-C-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRL-A-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L-~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..| . .++.|..+||+.+++    ++..+.+.++.|...|++.+.+..  ...-.+.+|+.++.+.
T Consensus        38 ~~~~iL~~l~~~~~~~t~~~la~~l~~----s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (146)
T 2fbh_A           38 ARWLVLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLI  106 (146)
T ss_dssp             THHHHHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHHHH
Confidence            445567777 4 478999999999999    799999999999999999986311  0112477787776544

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=94.14  E-value=0.069  Score=47.58  Aligned_cols=83  Identities=16%  Similarity=0.101  Sum_probs=54.4

Q ss_pred             CCCcceEEeecCCce-------------eeeehhHHHhhCCCCCceeEEeCCCCccCC-c--ccEeeHhhhhccCChHHH
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIP-A--ADAIFMKWVLTTWTDDEC  221 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p-~--~D~v~~~~vlh~~~d~~~  221 (301)
                      +++..++||+|++.|             +.+|.-++-......++|+++.+|.+...| .  .|+|++-.+.   +...+
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~~~  285 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPAKV  285 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHHHH
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChHHh
Confidence            456789999999995             556864443333346899999999998744 3  4988876554   34445


Q ss_pred             HHHHHHHHHhCCCCCEEEEecc
Q 043063          222 KLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       222 ~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..++.+.......++.++.+..
T Consensus       286 ~~l~~~wl~~~~~~~aI~~lKL  307 (375)
T 4auk_A          286 AALMAQWLVNGWCRETIFNLKL  307 (375)
T ss_dssp             HHHHHHHHHTTSCSEEEEEEEC
T ss_pred             HHHHHHHHhccccceEEEEEEe
Confidence            5666665555444455555444

>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48

Probab=94.13  E-value=0.037  Score=39.02  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=41.7

Q ss_pred             CCCHHHHHHHhCCCCCCCccc-HHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           19 PLSASQILTRILPSGGGDAEN-LQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~-l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      +.|..+||+.+++    ++.. +.+.++.|...|++..++.+...-.+.+|+.++.+.
T Consensus        30 ~~t~~eLa~~l~i----s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~~~   83 (95)
T 2pg4_A           30 EPSLAEIVKASGV----SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRRLA   83 (95)
T ss_dssp             CCCHHHHHHHHCC----CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHHHH
T ss_pred             CCCHHHHHHHHCC----CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHHHH
Confidence            7999999999999    7889 999999999999999442111122478888886654

>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}

Probab=94.08  E-value=0.017  Score=44.01  Aligned_cols=65  Identities=18%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|+|.+....  ...-.+.+|+.++.+.
T Consensus        32 ~q~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~   99 (145)
T 3g3z_A           32 NLFAVLYTLATEGSRTQKHIGEKWSL----PKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKAYA   99 (145)
T ss_dssp             HHHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHHHH
Confidence            34556666754 78999999999999    799999999999999999986321  0112588999887654

>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}

Probab=94.06  E-value=0.039  Score=37.51  Aligned_cols=36  Identities=17%  Similarity=0.219  Sum_probs=33.4

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      +|.|+.|||+++|+    .+..+++-|..|...|+|.+..
T Consensus        23 ~~psv~EIa~~lgv----S~~TVrr~L~~Le~kG~I~R~~   58 (77)
T 2jt1_A           23 APVKTRDIADAAGL----SIYQVRLYLEQLHDVGVLEKVN   58 (77)
T ss_dssp             SCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEES
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEecC
Confidence            78899999999999    5888999999999999999983

>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}

Probab=94.01  E-value=0.018  Score=43.45  Aligned_cols=64  Identities=22%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+.+..  +..-.|.+|+.++.+.
T Consensus        33 ~~~iL~~l~~~~~~~~~ela~~l~i----s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~~~   99 (142)
T 3bdd_A           33 RYSILQTLLKDAPLHQLALQERLQI----DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQAREAL   99 (142)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            4556677764 78999999999999    799999999999999999987421  0112588999887766

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=93.99  E-value=0.018  Score=51.50  Aligned_cols=82  Identities=15%  Similarity=0.149  Sum_probs=55.5

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC--------------CCceeEEeCCCCccC---C----c
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--------------IPGVTHIGGDMFKSI---P----A  203 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--------------~~ri~~~~gd~~~~~---p----~  203 (301)
                      ++++||-||||.|              +++|+ |.|++.+++              .+|++++.+|.+..+   +    .
T Consensus       205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            3579999999986              46677 788776542              257999999987542   1    2


Q ss_pred             ccEeeHhhhhcc-------CC-hHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          204 ADAIFMKWVLTT-------WT-DDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       204 ~D~v~~~~vlh~-------~~-d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .|+|+.=-.=..       .. ..-...+++.++++|+|||.++..
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q  330 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQ  330 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEe
Confidence            488875321100       00 112357899999999999988765

>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}

Probab=93.99  E-value=0.014  Score=44.81  Aligned_cols=64  Identities=17%  Similarity=0.241  Sum_probs=48.8

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|+|.+....  ...-.+.+|+.++.+.
T Consensus        42 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  108 (152)
T 3bj6_A           42 QRAILEGLSLTPGATAPQLGAALQM----KRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAII  108 (152)
T ss_dssp             HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHHH
Confidence            4456666653 78999999999999    799999999999999999986311  0112578888776554

>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}

Probab=93.96  E-value=0.013  Score=44.18  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=48.3

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+.+..  +..-.|.+|+.++.+.
T Consensus        35 ~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~~~  101 (139)
T 3bja_A           35 QFGVIQVLAKSGKVSMSKLIENMGC----VPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEETK  101 (139)
T ss_dssp             HHHHHHHHHHSCSEEHHHHHHHCSS----CCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCC----ChhHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHHHH
Confidence            4456666653 78999999999999    788999999999999999986311  0112378888876554

>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A

Probab=93.95  E-value=0.021  Score=43.88  Aligned_cols=64  Identities=16%  Similarity=0.185  Sum_probs=46.1

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc-cccCCC---eEecChhchhhh
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR-EFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~-~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.++..|..++.|..+||+.+++    ++..+.++++.|...|++.+.+ +...+.   .+.+|+.++.+.
T Consensus        40 q~~iL~~l~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~~~  107 (151)
T 3kp7_A           40 QSHVLNMLSIEALTVGQITEKQGV----NKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKKYI  107 (151)
T ss_dssp             HHHHHHHHHHSCBCHHHHHHHHCS----CSSHHHHHHHHHHHTTSEEC-----------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHHHH
Confidence            445666673389999999999999    7889999999999999999721 000122   367787776554

>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}

Probab=93.93  E-value=0.016  Score=44.04  Aligned_cols=65  Identities=17%  Similarity=0.168  Sum_probs=49.6

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.++++.|+..|+|++.+..  ...-.+.+|+.++.+.
T Consensus        38 ~~~~iL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  105 (143)
T 3oop_A           38 EQWSVLEGIEANEPISQKEIALWTKK----DTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKET  105 (143)
T ss_dssp             HHHHHHHHHHHHSSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCC----CHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHHH
Confidence            34556666664 88999999999999    899999999999999999986321  0112488888887654

>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28

Probab=93.90  E-value=0.016  Score=44.05  Aligned_cols=63  Identities=10%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|+|.+.... .+.   .|.+|+.++.+.
T Consensus        35 ~~~iL~~l~~~~~~~~~~la~~l~~----s~~tvs~~l~~L~~~glv~r~~~~-~d~r~~~~~lT~~G~~~~  101 (145)
T 2a61_A           35 QFDILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDP-ADRRAYFLVITRKGEEVI  101 (145)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCC-CCCceEEEEECHHHHHHH
Confidence            4556666654 78999999999999    799999999999999999986311 111   478888887654

>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28

Probab=93.87  E-value=0.015  Score=43.73  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=48.8

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|++.+.... .+.   .+.+|+.++.+.
T Consensus        36 ~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~gli~r~~~~-~d~R~~~~~lT~~G~~~~  102 (138)
T 1jgs_A           36 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNP-NDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECT-TCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHHCC----ChHHHHHHHHHHHHCCCEEecCCc-ccCceeEeEEChhHHHHH
Confidence            4455666654 78999999999999    799999999999999999986311 111   378888876654

>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=93.85  E-value=0.014  Score=43.96  Aligned_cols=64  Identities=19%  Similarity=0.230  Sum_probs=48.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+....  ...-.|.+|+.++.+.
T Consensus        40 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~~~  106 (140)
T 2nnn_A           40 QWAALVRLGETGPCPQNQLGRLTAM----DAATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGRAEL  106 (140)
T ss_dssp             HHHHHHHHHHHSSBCHHHHHHHTTC----CHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHHHHH
Confidence            4556677754 78999999999999    799999999999999999986311  0011478888876554

>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}

Probab=93.82  E-value=0.019  Score=44.59  Aligned_cols=64  Identities=19%  Similarity=0.138  Sum_probs=46.8

Q ss_pred             ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.|+..|. .++.|..+||+.+++    ++..+.+.++.|...|+|.+....  +..-.|.+|+.++.+.
T Consensus        51 ~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  117 (162)
T 2fa5_A           51 EWRVITILALYPGSSASEVSDRTAM----DKVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQVY  117 (162)
T ss_dssp             HHHHHHHHHHSTTCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHHH
Confidence            445666665 478999999999999    799999999999999999986311  0113477888776554

>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28

Probab=93.73  E-value=0.014  Score=44.24  Aligned_cols=64  Identities=14%  Similarity=0.180  Sum_probs=48.3

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+.+..  +..-.+.+|+.++.+.
T Consensus        39 ~~~iL~~l~~~~~~~~~ela~~l~~----~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~~~  105 (142)
T 2bv6_A           39 QFLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIR  105 (142)
T ss_dssp             HHHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHHHH
Confidence            4455666653 78999999999999    788999999999999999987421  0111578888876554

>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19

Probab=93.70  E-value=0.071  Score=35.77  Aligned_cols=54  Identities=11%  Similarity=0.054  Sum_probs=42.5

Q ss_pred             cccccccCCCC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            9 GGKKGRLANTP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         9 lglf~~L~~g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      ++.+..|.++. .|+.+||+++|+    ....+.|.|..|...|.|.....  .+-.|..+
T Consensus        18 ~~~i~~L~~~~~~Ta~~IAkkLg~----sK~~vNr~LY~L~kkG~V~~~~~--~PP~W~~~   72 (75)
T 1sfu_A           18 KKEVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMVPS--NPPKWFKN   72 (75)
T ss_dssp             HHHHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEECC--SSCEEEEC
T ss_pred             HHHHHhCCCCcchHHHHHHHHHCC----CHHHHHHHHHHHHHCCCEecCCC--CCCCccCC
Confidence            34566787755 899999999999    78899999999999999987731  23456554

>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*

Probab=93.69  E-value=0.016  Score=43.63  Aligned_cols=63  Identities=17%  Similarity=0.244  Sum_probs=47.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+.+.. .++   .|.+|+.++.+.
T Consensus        31 ~~~iL~~l~~~~~~~~~ela~~l~~----s~~tvs~~l~~L~~~glv~~~~~~-~d~R~~~~~lT~~G~~~~   97 (138)
T 3bpv_A           31 QVACLLRIHREPGIKQDELATFFHV----DKGTIARTLRRLEESGFIEREQDP-ENRRRYILEVTRRGEEII   97 (138)
T ss_dssp             HHHHHHHHHHSTTCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHTH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCC-CCceeEEeeECHhHHHHH
Confidence            3445666654 78999999999999    799999999999999999986311 112   377888776554

>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A

Probab=93.68  E-value=0.019  Score=44.12  Aligned_cols=66  Identities=24%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhcC
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVTD   77 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~~   77 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|+|.+....  ...-.+.+|+.++.+...
T Consensus        49 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~~~  117 (153)
T 2pex_A           49 QYLVMLVLWETDERSVSEIGERLYL----DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRALRSK  117 (153)
T ss_dssp             HHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHHGGGG
T ss_pred             HHHHHHHHHhCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHHHHHH
Confidence            4455666653 78999999999999    799999999999999999986311  011258889988766543

>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55

Probab=93.68  E-value=0.059  Score=41.40  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=39.6

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      ++ |.++||+..++    ++..++++|..|...|+|...+  | .|.|+++.-.
T Consensus        23 ~~-s~~~IA~~~~i----~~~~l~kIl~~L~~aGlv~s~r--G-~GGy~Lar~p   68 (145)
T 1xd7_A           23 KT-SSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--G-VPGASLKKDP   68 (145)
T ss_dssp             CC-CHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--S-SSSCEESSCG
T ss_pred             CC-CHHHHHHHHCc----CHHHHHHHHHHHHHCCceEeec--C-CCCceecCCH
Confidence            45 99999999999    8999999999999999998874  3 6678887644

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=93.66  E-value=0.04  Score=49.53  Aligned_cols=75  Identities=11%  Similarity=0.022  Sum_probs=51.2

Q ss_pred             cceEEeecCCce---------------eeeeh-hHHHhhCCC---------------------CCceeEEeCCCCcc---
Q 043063          161 VKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------------------IPGVTHIGGDMFKS---  200 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------------------~~ri~~~~gd~~~~---  200 (301)
                      ..+|||+|||+|               +.+|. |..++.+++                     ..+++++.+|....   
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            578999999995               35677 665554432                     12389999998754   


Q ss_pred             CCc-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          201 IPA-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       201 ~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .+. .|+|++-    .+..  ...+|..+.+.|+|||.|++.
T Consensus       128 ~~~~fD~I~lD----P~~~--~~~~l~~a~~~lk~gG~l~vt  163 (378)
T 2dul_A          128 RHRYFHFIDLD----PFGS--PMEFLDTALRSAKRRGILGVT  163 (378)
T ss_dssp             STTCEEEEEEC----CSSC--CHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccCCCCEEEeC----CCCC--HHHHHHHHHHhcCCCCEEEEE
Confidence            233 5988832    1111  247899999999999977664

>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}

Probab=93.65  E-value=0.017  Score=42.64  Aligned_cols=47  Identities=23%  Similarity=0.282  Sum_probs=40.9

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .++.|+..|.+++.|..+||+.+|+    ++..+.+.|+.|...|++...+
T Consensus        33 ~~~~il~~L~~~~~s~~ela~~l~i----s~stvsr~l~~Le~~Glv~~~~   79 (119)
T 2lkp_A           33 SRLMILTQLRNGPLPVTDLAEAIGM----EQSAVSHQLRVLRNLGLVVGDR   79 (119)
T ss_dssp             HHHHHHHHHHHCCCCHHHHHHHHSS----CHHHHHHHHHHHHHHCSEEEEE
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEEe
Confidence            3566777787678999999999999    7999999999999999998763

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=93.65  E-value=0.017  Score=52.17  Aligned_cols=77  Identities=12%  Similarity=0.043  Sum_probs=53.4

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCc-eeEEeCCCCccCC----c-ccEeeH
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPG-VTHIGGDMFKSIP----A-ADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~r-i~~~~gd~~~~~p----~-~D~v~~  209 (301)
                      +..+|||++||+|                +.+|. |..++.+++       .++ ++++.+|.++.+.    . .|+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            4579999999995                34676 666665543       245 9999999865432    2 599887


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      --    +..  ...+++.+.+.|+|||.|++.-
T Consensus       132 DP----~g~--~~~~l~~a~~~Lk~gGll~~t~  158 (392)
T 3axs_A          132 DP----FGT--PVPFIESVALSMKRGGILSLTA  158 (392)
T ss_dssp             CC----SSC--CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CC----CcC--HHHHHHHHHHHhCCCCEEEEEe
Confidence            54    111  1368899999999999766654

>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A

Probab=93.65  E-value=0.043  Score=38.74  Aligned_cols=51  Identities=12%  Similarity=0.151  Sum_probs=40.4

Q ss_pred             CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .|..+||+.+++    ++..+.++++.|...|+|.... ++..-.|++|+.++.+.
T Consensus        31 ~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~~~~-d~R~~~v~LT~~G~~~~   81 (95)
T 2qvo_A           31 VYIQYIASKVNS----PHSYVWLIIKKFEEAKMVECEL-EGRTKIIRLTDKGQKIA   81 (95)
T ss_dssp             EEHHHHHHHSSS----CHHHHHHHHHHHHHTTSEEEEE-ETTEEEEEECHHHHHHH
T ss_pred             cCHHHHHHHHCc----CHHHHHHHHHHHHHCcCccCCC-CCCeEEEEEChhHHHHH
Confidence            899999999999    8999999999999999994331 10112489999887654

>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}

Probab=93.64  E-value=0.16  Score=40.62  Aligned_cols=63  Identities=19%  Similarity=0.191  Sum_probs=49.2

Q ss_pred             cccccccccCCCCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcCcceecccccc----CCCeEecChhchh
Q 043063            7 RDGGKKGRLANTPLSASQILTRIL-PSGGGDAENLQRILRLLTNYGVFSEHREFG----GERKYSLTEIGKS   73 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~----~~~~y~~t~~s~~   73 (301)
                      .++.|+..|.+++.|+.+|++.++ +    ....+.+.|+.|...|+|+..+++.    ....|++++.+..
T Consensus        24 ~Rl~il~~L~~~~~~~~~l~~~l~~~----~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~~~~   91 (182)
T 4g6q_A           24 LRWRITQLLIGRSLTTRELAELLPDV----ATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQAGD   91 (182)
T ss_dssp             HHHHHHHHTTTSCEEHHHHHHHCTTB----CHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTTTTT
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHhcCC----CHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEecccccc
Confidence            467889999889999999999996 7    5678999999999999998654321    1235888876533

>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}

Probab=93.59  E-value=0.019  Score=44.62  Aligned_cols=65  Identities=20%  Similarity=0.136  Sum_probs=49.3

Q ss_pred             cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|. .++.|..+||+.+++    ++..+.++++.|+..|+|.+.+..  ...-.+.+|+.++.+.
T Consensus        51 ~q~~vL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~  118 (159)
T 3s2w_A           51 GQFPFLMRLYREDGINQESLSDYLKI----DKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE  118 (159)
T ss_dssp             TTHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence            3455566665 378999999999999    899999999999999999987421  0111478888876654

>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}

Probab=93.55  E-value=0.024  Score=43.89  Aligned_cols=65  Identities=14%  Similarity=0.100  Sum_probs=48.3

Q ss_pred             ccccccccc-C-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRL-A-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L-~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..| . .++.|..+||+.+++    ++..+.++++.|...|+|.+....  +..-.+.+|+.++.+.
T Consensus        48 ~~~~iL~~L~~~~~~~~~~ela~~l~i----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  116 (160)
T 3boq_A           48 AKFDAMAQLARNPDGLSMGKLSGALKV----TNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLTTF  116 (160)
T ss_dssp             HHHHHHHHHHHCTTCEEHHHHHHHCSS----CCSCHHHHHHHHHHHTSEEEC--------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHHHH
Confidence            345677777 3 478999999999999    788999999999999999986311  0111377888776554

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=93.51  E-value=0.036  Score=48.20  Aligned_cols=60  Identities=20%  Similarity=0.252  Sum_probs=41.5

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc---C---
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS---I---  201 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~---~---  201 (301)
                      ..+++.+. ..+..+|||+|||+|               +.+|. |.+++.+++     .+|++++.+|+.+.   +   
T Consensus        16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence            34444443 556789999999995               56797 778777653     16899999997642   1   


Q ss_pred             --CcccEeeH
Q 043063          202 --PAADAIFM  209 (301)
Q Consensus       202 --p~~D~v~~  209 (301)
                        ...|.|++
T Consensus        95 g~~~~D~Vl~  104 (301)
T 1m6y_A           95 GIEKVDGILM  104 (301)
T ss_dssp             TCSCEEEEEE
T ss_pred             CCCCCCEEEE
Confidence              12477765

>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B

Probab=93.51  E-value=0.017  Score=39.68  Aligned_cols=55  Identities=9%  Similarity=0.175  Sum_probs=42.9

Q ss_pred             CccccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            3 DNECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         3 ~~~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .-+..+..|++.|.. ++.|+.+|++.++...+..+..+.++|+.|...|+|.+.+
T Consensus         6 ~lt~~e~~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~   61 (82)
T 1p6r_A            6 QISDAELEVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHK   61 (82)
T ss_dssp             CCCHHHHHHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCHHHHHHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEe
Confidence            345667778888864 7899999999997300005789999999999999999874

>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}

Probab=93.48  E-value=0.02  Score=43.67  Aligned_cols=64  Identities=17%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|+|.+.+..  ...-.+.+|+.++.+.
T Consensus        42 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~~~  108 (148)
T 3nrv_A           42 EWRIISVLSSASDCSVQKISDILGL----DKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQELY  108 (148)
T ss_dssp             HHHHHHHHHHSSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHHHH
Confidence            4455666653 78999999999999    799999999999999999987321  0122477888776554

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=93.38  E-value=0.035  Score=50.39  Aligned_cols=50  Identities=26%  Similarity=0.405  Sum_probs=37.4

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC-----cccEeeH
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP-----AADAIFM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p-----~~D~v~~  209 (301)
                      ...+|||+|||+|             +.+|. |.+++.++.        .++|+++.+|+++.++     ..|+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            3579999999996             56787 777766643        1579999999987422     2599887

>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28

Probab=93.37  E-value=0.024  Score=42.79  Aligned_cols=64  Identities=8%  Similarity=0.012  Sum_probs=47.1

Q ss_pred             ccccccccCC-C--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-T--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. +  +.|..+||+.+++    ++..+.+.++.|...|+|.+.+..  ...-.+.+|+.++.+.
T Consensus        36 ~~~iL~~l~~~~~~~~~~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G~~~~  104 (141)
T 3bro_A           36 QMTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE  104 (141)
T ss_dssp             HHHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHHCCCCCcCHHHHHHHHCC----CcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHHHHHH
Confidence            3445555643 3  7999999999999    799999999999999999986321  0111477888776544

>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}

Probab=93.35  E-value=0.031  Score=42.78  Aligned_cols=65  Identities=14%  Similarity=0.122  Sum_probs=46.6

Q ss_pred             cccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063            7 RDGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT   76 (301)
Q Consensus         7 ~~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~   76 (301)
                      .++.++..|.  .++.|..+||+.+++    ++..+.++++.|+..|+|.+.+.. .+.   .+.+|+.++.+..
T Consensus        40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~~  109 (150)
T 3fm5_A           40 RSYSVLVLACEQAEGVNQRGVAATMGL----DPSQIVGLVDELEERGLVVRTLDP-SDRRNKLIAATEEGRRLRD  109 (150)
T ss_dssp             HHHHHHHHHHHSTTCCCSHHHHHHHTC----CHHHHHHHHHHHHTTTSEEC------------CEECHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeeCCc-cccchheeeECHHHHHHHH
Confidence            3455666664  357899999999999    899999999999999999986311 111   2778888766543

>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}

Probab=93.32  E-value=0.024  Score=43.37  Aligned_cols=64  Identities=11%  Similarity=0.154  Sum_probs=48.7

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+....  +..-.+.+|+.++.+.
T Consensus        44 ~~~iL~~l~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~~  110 (150)
T 2rdp_A           44 QFVALQWLLEEGDLTVGELSNKMYL----ACSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGERII  110 (150)
T ss_dssp             HHHHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CchhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHHHH
Confidence            4456666654 78999999999999    799999999999999999986311  0112478888876554

>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28

Probab=93.18  E-value=0.02  Score=43.39  Aligned_cols=65  Identities=17%  Similarity=0.149  Sum_probs=48.9

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+.+...  ..-.+.+|+.++.+.
T Consensus        30 ~~~~iL~~l~~~~~~t~~~la~~l~~----s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~~   97 (144)
T 1lj9_A           30 GQYLYLVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             THHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCcCcCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHHH
Confidence            34456666653 78999999999999    7999999999999999999864210  111378888876554

>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}

Probab=93.13  E-value=0.11  Score=40.03  Aligned_cols=50  Identities=18%  Similarity=0.216  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      ++.|..+||+.+|+    ++..+.+.|+.|...|+|.+.+    +..+.+|+.+..+.
T Consensus        53 ~~~~~~~la~~l~v----s~~tvs~~l~~Le~~Glv~r~~----~~~~~lT~~g~~~~  102 (155)
T 2h09_A           53 GEARQVDMAARLGV----SQPTVAKMLKRLATMGLIEMIP----WRGVFLTAEGEKLA  102 (155)
T ss_dssp             SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTCEEEET----TTEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHhCc----CHHHHHHHHHHHHHCCCEEEec----CCceEEChhHHHHH
Confidence            78899999999999    7889999999999999999873    56789999886554

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=93.08  E-value=0.059  Score=41.39  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=42.3

Q ss_pred             CcceEEeecCCceeeeehhHHHhh-CC--------CCCceeEEeCCCCccCC----cccEeeHhhhhccCChHHHHHHHH
Q 043063          160 GVKRLVDVGGSAGINFDLPEVVAE-AP--------SIPGVTHIGGDMFKSIP----AADAIFMKWVLTTWTDDECKLIME  226 (301)
Q Consensus       160 ~~~~vlDvGgG~g~~~Dlp~v~~~-a~--------~~~ri~~~~gd~~~~~p----~~D~v~~~~vlh~~~d~~~~~iL~  226 (301)
                      ...++||||||+|.  +....++. ..        ....+.++..|+|.+..    .+|+|...+     |+.+.+.-+.
T Consensus        35 ~~~rVlEVG~G~g~--~vA~~La~~~g~~V~atDInp~Av~~v~dDiF~P~~~~Y~~~DLIYsir-----PP~El~~~i~  107 (153)
T 2k4m_A           35 PGTRVVEVGAGRFL--YVSDYIRKHSKVDLVLTDIKPSHGGIVRDDITSPRMEIYRGAALIYSIR-----PPAEIHSSLM  107 (153)
T ss_dssp             SSSEEEEETCTTCC--HHHHHHHHHSCCEEEEECSSCSSTTEECCCSSSCCHHHHTTEEEEEEES-----CCTTTHHHHH
T ss_pred             CCCcEEEEccCCCh--HHHHHHHHhCCCeEEEEECCccccceEEccCCCCcccccCCcCEEEEcC-----CCHHHHHHHH
Confidence            45799999999973  11111110 00        01122389999998844    469886655     4445555555


Q ss_pred             HHHHhCCCCCEEEEecc
Q 043063          227 NCYKAIPAGGKLIACEP  243 (301)
Q Consensus       227 ~~~~aL~pgg~lli~e~  243 (301)
                      ++++..  |.-++|.-.
T Consensus       108 ~lA~~v--~adliI~pL  122 (153)
T 2k4m_A          108 RVADAV--GARLIIKPL  122 (153)
T ss_dssp             HHHHHH--TCEEEEECB
T ss_pred             HHHHHc--CCCEEEEcC
Confidence            565543  455665543

>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28

Probab=93.07  E-value=0.027  Score=43.44  Aligned_cols=64  Identities=17%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|+..|+|.+....  ...-.|.+|+.++.+.
T Consensus        46 ~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  112 (154)
T 2eth_A           46 ELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIF  112 (154)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHHHHH
Confidence            4556667764 78999999999999    789999999999999999986311  0112477888876554

>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}

Probab=93.06  E-value=0.02  Score=40.92  Aligned_cols=59  Identities=17%  Similarity=0.126  Sum_probs=44.5

Q ss_pred             ccccccccc-CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            7 RDGGKKGRL-ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L-~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      .++.|+..| ..|+.|+.+||+.+|+    .+..+.+.|+.|... ++...+.+ ..-.|++++..
T Consensus        28 ~Rl~IL~~l~~~~~~~~~ela~~l~i----s~stvs~hL~~L~~~-lv~~~~~g-r~~~y~l~~~~   87 (99)
T 2zkz_A           28 MRLKIVNELYKHKALNVTQIIQILKL----PQSTVSQHLCKMRGK-VLKRNRQG-LEIYYSINNPK   87 (99)
T ss_dssp             HHHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHBTT-TBEEEEET-TEEEEECCCHH
T ss_pred             HHHHHHHHHHHCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHH-hhhheEeC-cEEEEEEChHH
Confidence            356677444 4589999999999999    788999999999999 99866421 22357777643

>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50

Probab=93.06  E-value=0.025  Score=40.55  Aligned_cols=48  Identities=17%  Similarity=0.101  Sum_probs=41.4

Q ss_pred             ccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            6 CRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         6 a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      ..++.|+..|.. ++.|..+||+.+|+    ++..+.+.|+.|...|+|.+..
T Consensus        20 ~~~~~il~~l~~~~~~s~~ela~~l~i----s~~tv~~~l~~L~~~glv~~~~   68 (109)
T 1sfx_A           20 PSDVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRREI   68 (109)
T ss_dssp             HHHHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEe
Confidence            345667777764 78999999999999    7999999999999999999873

>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}

Probab=92.97  E-value=0.019  Score=44.09  Aligned_cols=65  Identities=17%  Similarity=0.118  Sum_probs=47.4

Q ss_pred             cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.++..|. .++.|..+||+.+++    ++..+.++++.|+..|+|.+.+..  ...-.+.+|+.++.+.
T Consensus        42 ~q~~iL~~l~~~~~~~~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~~  109 (149)
T 4hbl_A           42 SQYLVMLTLWEENPQTLNSIGRHLDL----SSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQQ  109 (149)
T ss_dssp             HHHHHHHHHHHSSSEEHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHHH
Confidence            3455566665 478999999999999    899999999999999999986321  0112478888776554

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=92.95  E-value=0.2  Score=43.10  Aligned_cols=84  Identities=13%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             CCCcceEEeecCCce---------------eeeehhH-HHhhCC--C---CCceeEEeC-CCCccCCc-ccEeeHhhhhc
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDLPE-VVAEAP--S---IPGVTHIGG-DMFKSIPA-ADAIFMKWVLT  214 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dlp~-v~~~a~--~---~~ri~~~~g-d~~~~~p~-~D~v~~~~vlh  214 (301)
                      +.+..++||+||+.|               +.+|+.. ......  +   .+-+.+..+ |++...+. .|+|++-..-+
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~DlVlsD~APn  158 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDTLLCDIGES  158 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSEEEECCCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCEEeecCcCC
Confidence            667899999999995               1234411 000000  0   123444444 54432233 58888755444


Q ss_pred             ----cCChHHHHHHHHHHHHhCCCC-CEEEEe
Q 043063          215 ----TWTDDECKLIMENCYKAIPAG-GKLIAC  241 (301)
Q Consensus       215 ----~~~d~~~~~iL~~~~~aL~pg-g~lli~  241 (301)
                          ..+......+|+-+.+.|+|| |.+++-
T Consensus       159 sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~K  190 (300)
T 3eld_A          159 SSNPLVERDRTMKVLENFERWKHVNTENFCVK  190 (300)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence                111112356788889999999 988875

>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}

Probab=92.89  E-value=0.022  Score=44.38  Aligned_cols=65  Identities=18%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~   76 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.++++.|+..|+|.+....  ...-.+.+|+.++.+..
T Consensus        55 q~~vL~~l~~~~~~t~~eLa~~l~~----~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~  122 (161)
T 3e6m_A           55 KLRLLSSLSAYGELTVGQLATLGVM----EQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKKLA  122 (161)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHHHH
Confidence            4456666654 78999999999999    799999999999999999987421  01125888888876543

>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}

Probab=92.88  E-value=0.022  Score=44.26  Aligned_cols=64  Identities=16%  Similarity=0.139  Sum_probs=48.5

Q ss_pred             ccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.|+..|. .++.|..+||+.+++    ++..+.++++.|...|+|.+....  ...-.|.+|+.++.+.
T Consensus        54 ~~~iL~~l~~~~~~t~~ela~~l~i----s~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~~~  120 (162)
T 3cjn_A           54 KMRALAILSAKDGLPIGTLGIFAVV----EQSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRAVY  120 (162)
T ss_dssp             HHHHHHHHHHSCSEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            445666665 378999999999999    799999999999999999986311  0112478888776554

>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}

Probab=92.87  E-value=0.021  Score=44.81  Aligned_cols=66  Identities=17%  Similarity=0.124  Sum_probs=50.2

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVT   76 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~   76 (301)
                      .++.++..|.. ++.|..+||+.+++    ++..+.++++.|+..|+|.+....  ...-.+.+|+.++.+..
T Consensus        46 ~~~~iL~~L~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~  114 (168)
T 2nyx_A           46 PQFRTLVILSNHGPINLATLATLLGV----QPSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDVVR  114 (168)
T ss_dssp             HHHHHHHHHHHHCSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence            34556667764 78999999999999    799999999999999999986321  01123888998876543

>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}

Probab=92.87  E-value=0.031  Score=42.92  Aligned_cols=63  Identities=11%  Similarity=0.151  Sum_probs=48.1

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec--cccccCCC---eEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE--HREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~--~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|+|.+  .+.. .+.   .+.+|+.++.+.
T Consensus        43 ~~~iL~~l~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~~-~d~R~~~~~LT~~G~~~~  111 (154)
T 2qww_A           43 QLAMINVIYSTPGISVADLTKRLII----TGSSAAANVDGLISLGLVVKLNKTIP-NDSMDLTLKLSKKGEDLS  111 (154)
T ss_dssp             HHHHHHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEESCC--C-TTCTTCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCcCCC-CCCceeEeEECHHHHHHH
Confidence            4455666653 78999999999999    79999999999999999998  4211 122   588898886554

>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}

Probab=92.86  E-value=0.025  Score=43.01  Aligned_cols=63  Identities=14%  Similarity=0.155  Sum_probs=48.5

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      .++.++..|.. ++ |..+||+.+++    ++..+.+.++.|...|+|.+.+.. .+.   .+.+|+.++.+.
T Consensus        38 ~~~~iL~~l~~~~~-~~~~la~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~D~R~~~~~LT~~G~~~~  104 (144)
T 3f3x_A           38 LDFSILKATSEEPR-SMVYLANRYFV----TQSAITAAVDKLEAKGLVRRIRDS-KDRRIVIVEITPKGRQVL  104 (144)
T ss_dssp             HHHHHHHHHHHSCE-EHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHHCCC-CHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeccCC-CCCceEEEEECHHHHHHH
Confidence            34556666764 45 99999999999    799999999999999999987421 111   488999887654

>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}

Probab=92.73  E-value=0.025  Score=40.54  Aligned_cols=53  Identities=9%  Similarity=0.007  Sum_probs=42.0

Q ss_pred             cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      +..+..|++.|.+ ++.|+.||++.++...+..+.-+.++|+-|+..|+|.+.+
T Consensus        34 T~~e~~VL~~L~~~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~   87 (99)
T 2k4b_A           34 SNAELIVMRVIWSLGEARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEK   87 (99)
T ss_dssp             CCSCSHHHHHHHHHSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEe
Confidence            4567778888864 7999999999997510114678999999999999999874

>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28

Probab=92.69  E-value=0.019  Score=44.16  Aligned_cols=64  Identities=16%  Similarity=0.088  Sum_probs=48.5

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.|+..|.. ++.|..+||+.+++    ++..+.+.++.|...|+|.+....  ...-.|.+|+.++.+.
T Consensus        39 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  105 (155)
T 1s3j_A           39 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKF  105 (155)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHHHH
Confidence            3446666654 78999999999999    799999999999999999986311  0111478888776554

>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.64  E-value=0.11  Score=39.35  Aligned_cols=64  Identities=20%  Similarity=0.256  Sum_probs=48.0

Q ss_pred             ccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.  .++.|..+||+.+++    ++..+.+.++.|...|+|.+....  +..-.+.+|+.++.+.
T Consensus        37 ~~~iL~~l~~~~~~~~~~~la~~l~i----~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~~  104 (147)
T 2hr3_A           37 QLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  104 (147)
T ss_dssp             HHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHhCC----ChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHHHH
Confidence            344556664  478999999999999    799999999999999999986321  0112488888886654

>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28

Probab=92.63  E-value=0.021  Score=43.06  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++.+.+.. .+   -.|.+|+.++.+.
T Consensus        38 ~~~iL~~l~~~~~~t~~ela~~l~~----s~~~vs~~l~~Le~~glv~r~~~~-~d~R~~~~~lT~~G~~~~  104 (142)
T 2fbi_A           38 QWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAP-KDQRRVYVNLTEKGQQCF  104 (142)
T ss_dssp             HHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEeecCC-CCCCeeEEEECHHHHHHH
Confidence            4556666764 78999999999999    799999999999999999986311 11   1378888886654

>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64

Probab=92.53  E-value=0.033  Score=45.46  Aligned_cols=61  Identities=15%  Similarity=0.108  Sum_probs=48.2

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc----cCCCeEecChhc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF----GGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~----~~~~~y~~t~~s   71 (301)
                      .++.|+..|..+|.|+.+||+.+|+    ++..+.+.|+.|...|+|......    +..-.|++|+..
T Consensus        16 ~rl~IL~~L~~~~~s~~eLa~~l~i----s~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~Lt~~~   80 (202)
T 2p4w_A           16 TRRRILFLLTKRPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGL   80 (202)
T ss_dssp             HHHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTE
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEEChHH
Confidence            4566777887789999999999999    788999999999999999986421    112257777755

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=92.37  E-value=0.54  Score=45.62  Aligned_cols=107  Identities=16%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             CceeEEeCCCCcc--C-----------Ccc-cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChH
Q 043063          188 PGVTHIGGDMFKS--I-----------PAA-DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQ  253 (301)
Q Consensus       188 ~ri~~~~gd~~~~--~-----------p~~-D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~  253 (301)
                      ++..+++.|+.+.  +           |.. -++++--+|.+++.+++.++|+.+.+ + |++.+++.|.+.+..+.+ +
T Consensus       188 ~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~~~~~~~~e~~~~~~~~d-~  264 (695)
T 2zwa_A          188 PKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-ENSHFIILEQLIPKGPFE-P  264 (695)
T ss_dssp             SSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-SSEEEEEEEECCTTCTTS-H
T ss_pred             CCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-CCceEEEEEeecCCCCCC-h
Confidence            4889999999863  1           122 47778888889999999999999884 5 688899989887754321 1


Q ss_pred             HhhhhhhccHHHHhhhhc-cccccCHHHHHHHHHhCCCCceEEEEc
Q 043063          254 RTRALLEGDIFVMTIYRA-KGKHMTEQEFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       254 ~~~~~~~~d~~m~~~~~~-~g~~rt~~e~~~~l~~aGf~~~~~~~~  298 (301)
                      ..... ...+...++... -....+.++..+.|.+.||+.+...++
T Consensus       265 f~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~  309 (695)
T 2zwa_A          265 FSKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM  309 (695)
T ss_dssp             HHHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred             HHHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence            11110 001111110000 012347999999999999998776654

>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*

Probab=92.37  E-value=0.02  Score=43.58  Aligned_cols=66  Identities=20%  Similarity=0.159  Sum_probs=50.0

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhcC
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVTD   77 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~~   77 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.+.++.|...|+|.+.+..  ...-.+.+|+.++.+...
T Consensus        42 ~~~iL~~l~~~~~~~~~~la~~l~~----~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~~~~~  110 (147)
T 1z91_A           42 QYLALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGALLKEK  110 (147)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHSGGGG
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCC----CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHHHHHH
Confidence            4455666654 78999999999999    799999999999999999986321  011248889988766543

>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A

Probab=92.37  E-value=0.04  Score=39.01  Aligned_cols=58  Identities=10%  Similarity=0.145  Sum_probs=46.6

Q ss_pred             ccccccCC-CCCCHHHHHH-HhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063           10 GKKGRLAN-TPLSASQILT-RILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus        10 glf~~L~~-g~~t~~ela~-~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      .|+-.|.. ++.|..+||+ ..++    +...+.|-++.|...|+++.+    ++| +++|+.++.+..
T Consensus        20 siL~~L~~~~~~t~~~Lae~~l~~----drstvsrnl~~L~r~GlVe~~----~~D-l~LT~~G~~~l~   79 (95)
T 1bja_A           20 TILITIAKKDFITAAEVREVHPDL----GNAVVNSNIGVLIKKGLVEKS----GDG-LIITGEAQDIIS   79 (95)
T ss_dssp             HHHHHHHHSTTBCHHHHHHTCTTS----CHHHHHHHHHHHHTTTSEEEE----TTE-EEECHHHHHHHH
T ss_pred             HHHHHHHHCCCCCHHHHHHHHhcc----cHHHHHHHHHHHHHCCCeecC----CCC-eeeCHhHHHHHH
Confidence            34445543 6899999999 9999    899999999999999999944    244 999999876554

>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28

Probab=92.23  E-value=0.029  Score=45.87  Aligned_cols=64  Identities=14%  Similarity=0.026  Sum_probs=48.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.. ++.|..+||+.+++    ++..+.++++.|...|+|.+....  ...-.+.+|+.++.+.
T Consensus        50 q~~iL~~L~~~~~~t~~eLa~~l~i----~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  116 (207)
T 2fxa_A           50 EHHILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF  116 (207)
T ss_dssp             HHHHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHHH
Confidence            4455666654 78999999999999    899999999999999999987421  0011588999887654

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=92.15  E-value=0.07  Score=50.30  Aligned_cols=53  Identities=13%  Similarity=0.120  Sum_probs=36.9

Q ss_pred             eeEEeCCCCcc--CC--cccEeeHhhhhccC-------------ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          190 VTHIGGDMFKS--IP--AADAIFMKWVLTTW-------------TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       190 i~~~~gd~~~~--~p--~~D~v~~~~vlh~~-------------~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +.+..+|.+..  .+  ..|+|++.--+...             ++. -..+++++.+.|+|||++.++-+
T Consensus       244 ~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~-~~~Fl~~~l~~Lk~gGr~a~V~p  313 (541)
T 2ar0_A          244 GAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNK-QLCFMQHIIETLHPGGRAAVVVP  313 (541)
T ss_dssp             BSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCch-HHHHHHHHHHHhCCCCEEEEEec
Confidence            78899998864  22  35999886444321             122 24789999999999998877743

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=91.95  E-value=0.047  Score=46.31  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=39.0

Q ss_pred             CCCc--ceEEeecCCce-------------eeeeh-hHH-------HhhCCC-------C-CceeEEeCCCCcc---CCc
Q 043063          158 FKGV--KRLVDVGGSAG-------------INFDL-PEV-------VAEAPS-------I-PGVTHIGGDMFKS---IPA  203 (301)
Q Consensus       158 ~~~~--~~vlDvGgG~g-------------~~~Dl-p~v-------~~~a~~-------~-~ri~~~~gd~~~~---~p~  203 (301)
                      .++.  .+|||++||+|             +.+|. |.+       ++.++.       . +|++++.+|..+.   ++.
T Consensus        84 l~~g~~~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~  163 (258)
T 2oyr_A           84 IKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (258)
T ss_dssp             CBTTBCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred             ccCCCCCEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence            4455  79999999996             56787 543       322211       1 5799999998763   333


Q ss_pred             -ccEeeHhhhhcc
Q 043063          204 -ADAIFMKWVLTT  215 (301)
Q Consensus       204 -~D~v~~~~vlh~  215 (301)
                       .|+|++--.++.
T Consensus       164 ~fDvV~lDP~y~~  176 (258)
T 2oyr_A          164 RPQVVYLDPMFPH  176 (258)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             cCCEEEEcCCCCC
Confidence             599998766654

>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*

Probab=91.95  E-value=0.067  Score=41.12  Aligned_cols=46  Identities=20%  Similarity=0.073  Sum_probs=40.7

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|+..|.. ++.|..+||+.+|+    ++..+.+.|+.|...|++.+.
T Consensus         4 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   50 (150)
T 2pn6_A            4 IDLRILKILQYNAKYSLDEIAREIRI----PKATLSYRIKKLEKDGVIKGY   50 (150)
T ss_dssp             HHHHHHHHHTTCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCcEEEE
Confidence            35677888875 78999999999999    799999999999999999874

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=91.87  E-value=0.02  Score=47.80  Aligned_cols=61  Identities=11%  Similarity=0.172  Sum_probs=48.2

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceec-cccccC-----CCeEecChhch
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSE-HREFGG-----ERKYSLTEIGK   72 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~-~~~~~~-----~~~y~~t~~s~   72 (301)
                      .++.|+..|..+|.|+.+||+.+|+    .+..+.+.|+.|...|++.. ...+ .     .-.|++++.+.
T Consensus        13 ~R~~IL~~L~~g~~s~~ELa~~lgl----S~stVs~hL~~Le~aGLV~~~~~~g-r~~GRp~~~Y~Lt~~~~   79 (232)
T 2qlz_A           13 VRRDLLSHLTCMECYFSLLSSKVSV----SSTAVAKHLKIMEREGVLQSYEKEE-RFIGPTKKYYKISIAKS   79 (232)
T ss_dssp             HHHHHHHHHTTTTTCSSSSCTTCCC----CHHHHHHHHHHHHHTTSEEEEEECC------CEEEEEECCCEE
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeeecC-CCCCCccEEEEEccchh
Confidence            3556888888899999999999999    78899999999999999998 3211 1     12488887653

>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}

Probab=91.74  E-value=0.049  Score=43.73  Aligned_cols=66  Identities=14%  Similarity=0.160  Sum_probs=50.2

Q ss_pred             cccccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063            7 RDGGKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT   76 (301)
Q Consensus         7 ~~lglf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~   76 (301)
                      .++.++..|.   .++.|..+||+.+++    ++..+.++++.|+..|+|.+.....  ..-.+.+|+.++.+..
T Consensus        42 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~  112 (189)
T 3nqo_A           42 RQYMTILSILHLPEEETTLNNIARKMGT----SKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMV  112 (189)
T ss_dssp             HHHHHHHHHHHSCGGGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHH
Confidence            3445566665   468999999999999    7899999999999999999864210  1125889999876554

>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0

Probab=91.62  E-value=0.14  Score=38.38  Aligned_cols=65  Identities=20%  Similarity=0.240  Sum_probs=48.4

Q ss_pred             ccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063            8 DGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~   76 (301)
                      ++.++..|..   ++.|..+||+.+++    ++..+.++++.|...|+|.+.....  ..-.+.+|+.++.+..
T Consensus        33 ~~~vL~~l~~~~~~~~t~~ela~~l~~----~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~  102 (139)
T 3eco_A           33 QGHTLGYLYAHQQDGLTQNDIAKALQR----TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVE  102 (139)
T ss_dssp             HHHHHHHHHHSTTTCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCHHHHHHHhCC----CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHH
Confidence            3445555643   38999999999999    7999999999999999999864210  1124778888876553

>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36

Probab=91.57  E-value=0.13  Score=38.90  Aligned_cols=42  Identities=21%  Similarity=0.312  Sum_probs=36.6

Q ss_pred             ccccc--CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRL--ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L--~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ++..|  ..++.|..+||+.+|+    ++..+.++|+.|...|++.+.
T Consensus        31 il~~L~~~~~~~t~~ela~~l~~----~~stvs~~l~~L~~~G~v~r~   74 (152)
T 1ku9_A           31 VYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKV   74 (152)
T ss_dssp             HHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            34444  3588999999999999    789999999999999999986

>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0

Probab=91.43  E-value=0.12  Score=39.23  Aligned_cols=64  Identities=13%  Similarity=0.161  Sum_probs=40.3

Q ss_pred             ccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|..   ++.|..+||+.+++    ++..+.++++.|...|+|.+.....  ..-.+.+|+.++.+.
T Consensus        43 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~  111 (148)
T 3jw4_A           43 QGRMIGYIYENQESGIIQKDLAQFFGR----RGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALV  111 (148)
T ss_dssp             HHHHHHHHHHHTTTCCCHHHHHHC----------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHCC----ChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHH
Confidence            3445555542   68999999999999    7889999999999999999874210  011466777776554

>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D

Probab=91.31  E-value=0.11  Score=38.72  Aligned_cols=64  Identities=8%  Similarity=0.087  Sum_probs=47.5

Q ss_pred             cccccccC-C--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhhc
Q 043063            9 GGKKGRLA-N--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLVT   76 (301)
Q Consensus         9 lglf~~L~-~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~~   76 (301)
                      +.++..|. .  ++.|..+||+.+++    ++..+.++++.|...|+|.+.+..  ...-.+.+|+.++.+..
T Consensus        40 ~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~~~~~  108 (127)
T 2frh_A           40 FAVLTYISENKEKEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIE  108 (127)
T ss_dssp             HHHHHHHHHTCCSEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHH
T ss_pred             HHHHHHHHhccCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence            34444553 2  67899999999999    789999999999999999985321  01124788888876543

>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A

Probab=91.25  E-value=0.092  Score=42.42  Aligned_cols=46  Identities=13%  Similarity=0.107  Sum_probs=41.4

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|+..|.+++.|..+||+.+|+    .+..+.+.|+.|...|++.+.
T Consensus        21 ~~~~IL~~L~~~~~s~~eLA~~lgl----S~stv~~~l~~Le~~GlI~~~   66 (192)
T 1uly_A           21 TRRKILKLLRNKEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVK   66 (192)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            4556788888889999999999999    788999999999999999876

>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A

Probab=91.23  E-value=0.031  Score=41.28  Aligned_cols=64  Identities=16%  Similarity=0.176  Sum_probs=47.9

Q ss_pred             cccccccccccCC-CCCCHHHHHHHhC----CCCCCCcccHHHHHHHHhcCcceeccccccCCCe---EecChhchhhh
Q 043063            5 ECRDGGKKGRLAN-TPLSASQILTRIL----PSGGGDAENLQRILRLLTNYGVFSEHREFGGERK---YSLTEIGKSLV   75 (301)
Q Consensus         5 ~a~~lglf~~L~~-g~~t~~ela~~~~----~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~---y~~t~~s~~l~   75 (301)
                      +..+..|+..|.. ++.|..+||+.++    +    .+..+.++|+.|...|+|.+.+.   +.+   +.+|+.++.+.
T Consensus         9 t~~~~~vL~~l~~~~~~t~~ela~~l~~~~~~----s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~~~lT~~g~~~~   80 (123)
T 1okr_A            9 SSAEWEVMNIIWMKKYASANNIIEEIQMQKDW----SPKTIRTLITRLYKKGFIDRKKD---NKIFQYYSLVEESDIKY   80 (123)
T ss_dssp             CHHHHHHHHHHHHHSSEEHHHHHHHHHHHCCC----CHHHHHHHHHHHHHHTSEEEEEE---TTEEEEEESSCHHHHHH
T ss_pred             CHHHHHHHHHHHhCCCcCHHHHHHHHhccCCC----cHhhHHHHHHHHHHCCCeEEEec---CCeEEEEEecCHHHHHH
Confidence            4455667777764 7899999999998    5    58899999999999999998741   222   34666655443

>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50

Probab=91.09  E-value=0.078  Score=37.83  Aligned_cols=37  Identities=11%  Similarity=0.302  Sum_probs=34.3

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .++.|..+||+.+|+    ++..+.+.|+.|...|++.+.+
T Consensus        34 ~~~~t~~ela~~l~i----s~~tv~~~l~~L~~~g~v~~~~   70 (109)
T 2d1h_A           34 EKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             CSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec
Confidence            578999999999999    7889999999999999999873

>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41

Probab=91.07  E-value=0.049  Score=39.49  Aligned_cols=46  Identities=15%  Similarity=0.154  Sum_probs=39.2

Q ss_pred             cccccccccC-CC-CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLA-NT-PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~-~g-~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .++.|+..|. .| +.|..+||+.+|+    +...+++.|+.|...|++...
T Consensus        19 ~~l~Il~~l~~~g~~~s~~eLa~~lgv----s~~tV~~~L~~L~~~GlV~~~   66 (110)
T 1q1h_A           19 DVIDVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYR   66 (110)
T ss_dssp             TTHHHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            4556777773 35 7899999999999    788999999999999999875

>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}

Probab=91.05  E-value=0.041  Score=40.98  Aligned_cols=46  Identities=13%  Similarity=0.184  Sum_probs=39.0

Q ss_pred             cccccccccCC--CC-CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN--TP-LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~--g~-~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|+..|..  +| .|+.+||+.+++    +...+.|.|+.|...|++.+.
T Consensus        27 ~e~~il~~L~~~~~~~~t~~eLa~~l~~----s~sTV~r~L~~L~~~GlV~r~   75 (123)
T 3r0a_A           27 ADLNVMKSFLNEPDRWIDTDALSKSLKL----DVSTVQRSVKKLHEKEILQRS   75 (123)
T ss_dssp             HHHHHHHHHHHSTTCCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHCCCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            34556777753  45 899999999999    799999999999999999876

>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}

Probab=90.87  E-value=0.096  Score=35.11  Aligned_cols=53  Identities=13%  Similarity=0.158  Sum_probs=45.9

Q ss_pred             ccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            8 DGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         8 ~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      +-.|++.|.+  .|++..+||+.+|+    +..-+.+.|..|-..|.|....    .-.|+++
T Consensus        21 eekVLe~LkeaG~PlkageIae~~Gv----dKKeVdKaik~LKkEgkI~SPk----RCyw~~~   75 (80)
T 2lnb_A           21 EQRILQVLTEAGSPVKLAQLVKECQA----PKRELNQVLYRMKKELKVSLTS----PATWCLG   75 (80)
T ss_dssp             HHHHHHHHHHHTSCEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEE----TTEEEES
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCccCCC----CceeeCC
Confidence            4457788864  79999999999999    8999999999999999999883    6788876

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=90.84  E-value=0.46  Score=46.67  Aligned_cols=86  Identities=16%  Similarity=0.115  Sum_probs=51.0

Q ss_pred             CCCcceEEeecCCce------------------eeeeh-hHHHhhC--C----C------CCceeEEeCCCCcc--CC--
Q 043063          158 FKGVKRLVDVGGSAG------------------INFDL-PEVVAEA--P----S------IPGVTHIGGDMFKS--IP--  202 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g------------------~~~Dl-p~v~~~a--~----~------~~ri~~~~gd~~~~--~p--  202 (301)
                      +....+|+|.|||+|                  .++|+ |.+++.|  +    .      .+...+...|++.+  .+  
T Consensus       319 l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~  398 (878)
T 3s1s_A          319 LTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFA  398 (878)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGT
T ss_pred             CCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccC
Confidence            345679999999996                  24565 5554444  1    0      12235566677653  12  


Q ss_pred             cccEeeHhhhhcc-CCh-H-------------------------HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          203 AADAIFMKWVLTT-WTD-D-------------------------ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       203 ~~D~v~~~~vlh~-~~d-~-------------------------~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..|+|++.=-.-. +.. .                         -...+++++.+.|+|||++.++-+
T Consensus       399 kFDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP  466 (878)
T 3s1s_A          399 NVSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP  466 (878)
T ss_dssp             TEEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             CCCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence            2488887433311 111 0                         123578889999999998776654

>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2

Probab=90.81  E-value=0.07  Score=40.79  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=40.3

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|.. ++.|..+||+++|+    .+..+.+.|+.|...|++.+.
T Consensus         6 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   52 (144)
T 2cfx_A            6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY   52 (144)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            35567888864 78999999999999    799999999999999999865

>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}

Probab=90.67  E-value=0.12  Score=39.45  Aligned_cols=53  Identities=17%  Similarity=0.291  Sum_probs=42.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++.|..+||+.+++    ++..+.++++.|...|+|++.+.. .+.   ...+|+.++.+.
T Consensus        50 ~~~t~~eLa~~l~~----~~~tvs~~v~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~  105 (147)
T 4b8x_A           50 GELPMSKIGERLMV----HPTSVTNTVDRLVRSGLVAKRPNP-NDGRGTLATITDKGREVV  105 (147)
T ss_dssp             GEEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECC-----CEEEEECHHHHHHH
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCEEEeecC-CcCceeEEEECHHHHHHH
Confidence            67999999999999    899999999999999999987421 112   377888876654

>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A

Probab=90.60  E-value=0.077  Score=40.81  Aligned_cols=47  Identities=23%  Similarity=0.123  Sum_probs=40.9

Q ss_pred             ccccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            6 CRDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         6 a~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..+..|+..|. .++.|..+||+++|+    .+..+.+.|+.|...|++.+.
T Consensus         7 ~~~~~iL~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   54 (150)
T 2w25_A            7 DIDRILVRELAADGRATLSELATRAGL----SVSAVQSRVRRLESRGVVQGY   54 (150)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            34567788886 488999999999999    789999999999999999765

>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}

Probab=90.55  E-value=0.15  Score=39.76  Aligned_cols=64  Identities=22%  Similarity=0.343  Sum_probs=46.0

Q ss_pred             ccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063            8 DGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~   76 (301)
                      ++.++..|..   ++.|..+||+.+++    ++..+.++++.|+..|+|.+.... .+.   .+.+|+.++.+..
T Consensus        48 q~~vL~~l~~~~~~~~t~~eLa~~l~~----~~~tvs~~l~~Le~~Glv~r~~~~-~DrR~~~l~LT~~G~~~~~  117 (168)
T 3u2r_A           48 QYNTLRLLRSVHPEGMATLQIADRLIS----RAPDITRLIDRLDDRGLVLRTRKP-ENRRVVEVALTDAGLKLLK  117 (168)
T ss_dssp             HHHHHHHHHHHTTSCEEHHHHHHHC-------CTHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEeecCCC-CCCCeeEeEECHHHHHHHH
Confidence            4445555643   48999999999999    788999999999999999987421 111   4788988876553

>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28

Probab=90.54  E-value=0.23  Score=38.75  Aligned_cols=64  Identities=20%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             ccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.  .++.|..+||+.+++    ++..+.++++.|+..|+|.+....  ...-.+.+|+.++.+.
T Consensus        55 q~~vL~~L~~~~~~~t~~eLa~~l~i----~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~  122 (166)
T 3deu_A           55 HWVTLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEPLI  122 (166)
T ss_dssp             HHHHHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC----CHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHHHH
Confidence            445666664  367999999999999    899999999999999999987421  0112478888877654

>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*

Probab=90.49  E-value=0.21  Score=38.22  Aligned_cols=60  Identities=12%  Similarity=0.106  Sum_probs=45.6

Q ss_pred             cccccccccccC--CCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            5 ECRDGGKKGRLA--NTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         5 ~a~~lglf~~L~--~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      |..+.-|++.|.  .++.|+++|.+.+     ++    +..-+.|.|+.|+..|++.+...+++..+|.++
T Consensus        21 T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   87 (145)
T 2fe3_A           21 TPQRHAILEYLVNSMAHPTADDIYKALEGKFPNM----SVATVYNNLRVFRESGLVKELTYGDASSRFDFV   87 (145)
T ss_dssp             CHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTC----CHHHHHHHHHHHHHTTSEEEECCTTSCCEEEEC
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----ChhhHHHHHHHHHHCCCEEEEeeCCCceEEECC
Confidence            556677888885  3689999999999     55    677999999999999999987422122357653

>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}

Probab=90.36  E-value=0.12  Score=40.38  Aligned_cols=46  Identities=13%  Similarity=0.148  Sum_probs=40.7

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|.. +++|..+||+++|+    .+..+.+-++.|...|++.+.
T Consensus         4 ~d~~il~~L~~~~~~s~~~la~~lg~----s~~tv~~rl~~L~~~g~i~~~   50 (162)
T 3i4p_A            4 LDRKILRILQEDSTLAVADLAKKVGL----STTPCWRRIQKMEEDGVIRRR   50 (162)
T ss_dssp             HHHHHHHHHTTCSCSCHHHHHHHHTC----CHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeec
Confidence            45668888875 89999999999999    799999999999999999865

>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*

Probab=90.21  E-value=0.39  Score=36.82  Aligned_cols=63  Identities=21%  Similarity=0.222  Sum_probs=47.0

Q ss_pred             cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063            9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT   76 (301)
Q Consensus         9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~   76 (301)
                      +.++-.|.  +++.+..+||+.+++    ++..+.++++.|+..|+|.+.+.. .+.   ...+|+.++.+..
T Consensus        34 ~~vL~~L~~~~~~~~~~eLa~~l~~----~~~tvs~~v~~Le~~GlV~R~~~~-~DrR~~~l~LT~~G~~~~~  101 (151)
T 4aik_A           34 WVTLYNINRLPPEQSQIQLAKAIGI----EQPSLVRTLDQLEEKGLITRHTSA-NDRRAKRIKLTEQSSPIIE  101 (151)
T ss_dssp             HHHHHHHHHSCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECS-SCTTCEEEEECGGGHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHCc----CHHHHHHHHHHHHhCCCeEeecCC-CCCcchhhhcCHHHHHHHH
Confidence            34455564  245788999999999    899999999999999999977421 122   4788888876553

>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A

Probab=89.91  E-value=0.09  Score=41.01  Aligned_cols=46  Identities=17%  Similarity=0.166  Sum_probs=40.3

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|.. ++.|..+||+++|+    .+..+.+.|+.|...|++.+.
T Consensus        11 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   57 (162)
T 2p5v_A           11 TDIKILQVLQENGRLTNVELSERVAL----SPSPCLRRLKQLEDAGIVRQY   57 (162)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEeee
Confidence            45567888864 78999999999999    788999999999999999865

>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61

Probab=89.69  E-value=0.14  Score=37.71  Aligned_cols=65  Identities=20%  Similarity=0.235  Sum_probs=49.6

Q ss_pred             cccccccccCCCCCCHHHHHHHhC--------CCCCCCc-ccHHHHHHHHhcCcceeccccc--c-CCCeEecChhchhh
Q 043063            7 RDGGKKGRLANTPLSASQILTRIL--------PSGGGDA-ENLQRILRLLTNYGVFSEHREF--G-GERKYSLTEIGKSL   74 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~--------~~~~~~~-~~l~~lL~~L~~~g~l~~~~~~--~-~~~~y~~t~~s~~l   74 (301)
                      .++-|+..|..+|.+..+|++.+.        +    ++ ..+.+.|+.|...|+|+.....  + ..-.|++|+.++.+
T Consensus        14 ~~~~IL~~L~~~~~~gyel~~~l~~~g~~~~~i----s~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~   89 (118)
T 2esh_A           14 LASTILLLVAEKPSHGYELAERLAEFGIEIPGI----GHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLY   89 (118)
T ss_dssp             HHHHHHHHHHHSCBCHHHHHHHHHTTCCSSTTC----CCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHhCCcccCC----CCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHH
Confidence            345567777778999999999983        6    67 8999999999999999876421  0 11259999999765


Q ss_pred             h
Q 043063           75 V   75 (301)
Q Consensus        75 ~   75 (301)
                      .
T Consensus        90 l   90 (118)
T 2esh_A           90 L   90 (118)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28

Probab=89.58  E-value=0.053  Score=43.04  Aligned_cols=65  Identities=15%  Similarity=0.134  Sum_probs=47.0

Q ss_pred             cccccccccCC-CC---CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            7 RDGGKKGRLAN-TP---LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g~---~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++.|+..|.. ++   .|..+||+.+++    ++..+.++++.|...|+|.+....  ...-.+.+|+.++.+.
T Consensus        70 ~~~~iL~~L~~~~~~~~~t~~eLa~~l~i----s~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~  140 (181)
T 2fbk_A           70 AGWDLLLTLYRSAPPEGLRPTELSALAAI----SGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALV  140 (181)
T ss_dssp             HHHHHHHHHHHHCCSSCBCHHHHHHHCSC----CSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHH
Confidence            34556666753 33   899999999999    788999999999999999986311  0011477888776554

>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}

Probab=89.39  E-value=0.089  Score=40.47  Aligned_cols=47  Identities=13%  Similarity=0.161  Sum_probs=40.8

Q ss_pred             ccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            6 CRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         6 a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..+..|++.|.. ++.|..+||+++|+    .+..+.+.++.|...|++.+.
T Consensus         9 ~~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   56 (151)
T 2dbb_A            9 RVDMQLVKILSENSRLTYRELADILNT----TRQRIARRIDKLKKLGIIRKF   56 (151)
T ss_dssp             HHHHHHHHHHHHCTTCCHHHHHHHTTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            345678888864 78999999999999    788999999999999999865

>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*

Probab=89.25  E-value=0.25  Score=37.82  Aligned_cols=52  Identities=21%  Similarity=0.326  Sum_probs=36.1

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      +++|..+||+.+++    ++..+.++++.|+..|+|.+..+  .+.   ...+|+.++.+.
T Consensus        51 ~~~t~~eLa~~l~~----~~~tvsr~v~~Le~~glVr~~~~--~DrR~~~v~LT~~G~~~~  105 (148)
T 4fx0_A           51 IDLTMSELAARIGV----ERTTLTRNLEVMRRDGLVRVMAG--ADARCKRIELTAKGRAAL  105 (148)
T ss_dssp             ---CHHHHHHHHTC----CHHHHHHHHHHHHHTTSBC-------------CCBCHHHHHHH
T ss_pred             CCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCC--CCCCeeEEEECHHHHHHH
Confidence            46899999999999    89999999999999999955421  122   366777776544

>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2

Probab=88.93  E-value=0.087  Score=40.58  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=40.3

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|.. ++.|..+||+++|+    .+..+.+.++.|...|++.+.
T Consensus         8 ~~~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   54 (151)
T 2cyy_A            8 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKKF   54 (151)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEE
Confidence            45667888864 78999999999999    789999999999999999865

>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}

Probab=88.83  E-value=0.19  Score=38.22  Aligned_cols=44  Identities=16%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .|.+.|..|+.|..+||+++|+    ......-.|+.|...|++.+..
T Consensus        15 ~ILE~Lk~G~~~t~~Iak~LGl----Shg~aq~~Ly~LeREG~V~~Vk   58 (165)
T 2vxz_A           15 DILALLADGCKTTSLIQQRLGL----SHGRAKALIYVLEKEGRVTRVA   58 (165)
T ss_dssp             HHHHHHTTCCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSCEEEE
T ss_pred             HHHHHHHhCCccHHHHHHHhCC----cHHHHHHHHHHHHhcCceEEEE
Confidence            4677888899999999999999    6889999999999999999884

>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42

Probab=88.82  E-value=0.2  Score=37.83  Aligned_cols=60  Identities=17%  Similarity=0.186  Sum_probs=45.4

Q ss_pred             cccccccccccCC---CCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            5 ECRDGGKKGRLAN---TPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         5 ~a~~lglf~~L~~---g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      |..+.-|++.|.+   ++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+....+...+|..+
T Consensus        17 T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   84 (136)
T 1mzb_A           17 TLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDV----GLATVYRVLTQFEAAGLVVRHNFDGGHAVFELA   84 (136)
T ss_dssp             CHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCC----CHHHHHHHHHHHHHHTSEEEECSSSSSCEEEES
T ss_pred             CHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCC----CHHHHHHHHHHHHHCCcEEEEEeCCCceEEEeC
Confidence            5566778888853   689999999998     55    677899999999999999987422122457653

>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}

Probab=88.58  E-value=0.46  Score=36.61  Aligned_cols=83  Identities=19%  Similarity=0.197  Sum_probs=56.8

Q ss_pred             cccccccCC---CCCCHHHHHHHhC-CCCCCCcccHHHHHHHHhcCcceecccccc---CCC----eEecChhchhhhcC
Q 043063            9 GGKKGRLAN---TPLSASQILTRIL-PSGGGDAENLQRILRLLTNYGVFSEHREFG---GER----KYSLTEIGKSLVTD   77 (301)
Q Consensus         9 lglf~~L~~---g~~t~~ela~~~~-~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~---~~~----~y~~t~~s~~l~~~   77 (301)
                      +.|++.|..   +..|+++|++.++ +    ...-+.+.|+.|+..|+|++....+   ..|    .|++|+.++.+...
T Consensus        32 ~~IL~~Ll~~p~~~~ta~eL~~~l~~l----S~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~~Gr~~l~~  107 (151)
T 3u1d_A           32 LDVLHQILAQPDGVLSVEELLYRNPDE----TEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTGEGIALLRA  107 (151)
T ss_dssp             HHHHHHHHHSTTSCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCHHHHHHhcCCC----CHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECHHHHHHHHH
Confidence            445666632   4579999999998 8    6889999999999999999642110   112    79999999765443


Q ss_pred             CCCCChhHHHHhhcchhHHhhhhhHHHhhc
Q 043063           78 AEGQSYAPYVLQHHQDALMSAWPLVHEAIL  107 (301)
Q Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~  107 (301)
                      ..  .+.          ...+|..|.+.+.
T Consensus       108 y~--~la----------~~~alr~l~~~v~  125 (151)
T 3u1d_A          108 VS--MYE----------EAAVWRSVYEQME  125 (151)
T ss_dssp             TT--CST----------HHHHTHHHHHHSC
T ss_pred             hH--HHh----------HHHHHHHHHHHhh
Confidence            21  111          1246777777774

>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2

Probab=88.56  E-value=0.1  Score=40.23  Aligned_cols=46  Identities=11%  Similarity=0.153  Sum_probs=40.3

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|.. ++.|..+||+++|+    .+..+.+.++.|...|++.+.
T Consensus         9 ~d~~il~~L~~~~~~s~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   55 (152)
T 2cg4_A            9 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA   55 (152)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHcCCcceE
Confidence            45567888864 78999999999999    789999999999999999865

>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2

Probab=88.52  E-value=0.43  Score=38.55  Aligned_cols=50  Identities=26%  Similarity=0.375  Sum_probs=43.4

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .+|.+..+||+.+|+    .++.++..++.|...|+++..     .+...+|+.++.+.
T Consensus        28 ~~~V~~~~LA~~Lgv----S~~SV~~~lkkL~e~GLV~~~-----~~Gv~LTe~G~~~A   77 (200)
T 2p8t_A           28 KEPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK-----QRGHFLTLKGKEIR   77 (200)
T ss_dssp             TSCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred             cCCccHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe-----CCCeEECHHHHHHH
Confidence            478999999999999    799999999999999999998     47899999887543

>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}

Probab=88.40  E-value=0.13  Score=40.55  Aligned_cols=46  Identities=15%  Similarity=0.184  Sum_probs=40.0

Q ss_pred             cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|++.|. +++.|..+||+++|+    .+..+.+.|+.|...|++.+.
T Consensus        18 ~d~~IL~~L~~~~~~s~~eLA~~lgl----S~~tv~~~l~~L~~~G~I~~~   64 (171)
T 2ia0_A           18 LDRNILRLLKKDARLTISELSEQLKK----PESTIHFRIKKLQERGVIERY   64 (171)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            4556778886 478999999999999    789999999999999999765

>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}

Probab=88.28  E-value=0.35  Score=35.74  Aligned_cols=57  Identities=11%  Similarity=0.101  Sum_probs=45.5

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.-.|.+.+...|.++.+||+.+++    ++..+..+|+.|+..|.+..-    .++.|-++..-
T Consensus         8 l~~~i~~~~~~~p~~~~~la~~~~~----~~~~~~~~l~~l~~~G~l~~i----~~~~~~~~~~~   64 (121)
T 2pjp_A            8 IWQKAEPLFGDEPWWVRDLAKETGT----DEQAMRLTLRQAAQQGIITAI----VKDRYYRNDRI   64 (121)
T ss_dssp             HHHHHGGGCSSSCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEEHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----cCCceECHHHH
Confidence            3445666665467799999999999    899999999999999999888    36777766543

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=88.28  E-value=0.62  Score=43.82  Aligned_cols=83  Identities=16%  Similarity=0.217  Sum_probs=53.3

Q ss_pred             CcceEEeecCCce------------------eeeeh-hHHHhhCCC------C--CceeEEeCCCCcc-CC---c--ccE
Q 043063          160 GVKRLVDVGGSAG------------------INFDL-PEVVAEAPS------I--PGVTHIGGDMFKS-IP---A--ADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g------------------~~~Dl-p~v~~~a~~------~--~ri~~~~gd~~~~-~p---~--~D~  206 (301)
                      ...+|+|.+||+|                  .++|+ |.++..|+.      .  +++.+..+|.+.. +|   .  .|+
T Consensus       221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~  300 (542)
T 3lkd_A          221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG  300 (542)
T ss_dssp             TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred             CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence            4579999999996                  24465 544444432      1  4678999999865 33   2  499


Q ss_pred             eeHhhhhc-cC------------------C---hHHHHHHHHHHHHhCC-CCCEEEEecc
Q 043063          207 IFMKWVLT-TW------------------T---DDECKLIMENCYKAIP-AGGKLIACEP  243 (301)
Q Consensus       207 v~~~~vlh-~~------------------~---d~~~~~iL~~~~~aL~-pgg~lli~e~  243 (301)
                      |+..=-+. .|                  +   +.+ ..+++++.+.|+ |||++.++-+
T Consensus       301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~gGr~a~VlP  359 (542)
T 3lkd_A          301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQDNGVMAIVLP  359 (542)
T ss_dssp             EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTTTCEEEEEEE
T ss_pred             EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCCceeEEEEec
Confidence            88641111 11                  1   111 248999999999 9998866543

>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}

Probab=88.20  E-value=0.12  Score=38.83  Aligned_cols=59  Identities=15%  Similarity=0.142  Sum_probs=45.0

Q ss_pred             cccccccccccC--CCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063            5 ECRDGGKKGRLA--NTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL   67 (301)
Q Consensus         5 ~a~~lglf~~L~--~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~   67 (301)
                      |..+.-|++.|.  .++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+...+++..+|..
T Consensus        10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~~i----s~~TVYR~L~~L~e~Glv~~~~~~~~~~~y~~   75 (131)
T 2o03_A           10 TRQRAAISTLLETLDDFRSAQELHDELRRRGENI----GLTTVYRTLQSMASSGLVDTLHTDTGESVYRR   75 (131)
T ss_dssp             HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTCCC----CHHHHHHHHHHHHTTTSEEEEECTTSCEEEEE
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCCEEEEEeCCCceEEEe
Confidence            455667888885  3689999999998     56    67899999999999999998742212235654

>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2

Probab=87.98  E-value=0.11  Score=39.28  Aligned_cols=46  Identities=13%  Similarity=0.156  Sum_probs=39.7

Q ss_pred             cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|+..|. .++.|..+||+.+|+    .+..+.+.|+.|...|++.+.
T Consensus         5 ~~~~il~~L~~~~~~~~~ela~~lg~----s~~tv~~~l~~L~~~G~i~~~   51 (141)
T 1i1g_A            5 RDKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY   51 (141)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEecc
Confidence            3556777785 478999999999999    799999999999999999765

>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}

Probab=87.92  E-value=0.38  Score=35.90  Aligned_cols=33  Identities=15%  Similarity=0.261  Sum_probs=31.5

Q ss_pred             CCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           20 LSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        20 ~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .|.++||+.+|+    ++..+.+.|+.|...|+|.+.
T Consensus        52 ps~~~LA~~l~~----s~~~V~~~l~~Le~kGlI~~~   84 (128)
T 2vn2_A           52 PTPAELAERMTV----SAAECMEMVRRLLQKGMIAIE   84 (128)
T ss_dssp             CCHHHHHHTSSS----CHHHHHHHHHHHHHTTSSEEC
T ss_pred             CCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            699999999999    899999999999999999986

>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61

Probab=87.70  E-value=0.15  Score=39.07  Aligned_cols=65  Identities=17%  Similarity=0.079  Sum_probs=49.8

Q ss_pred             cccccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhchhh
Q 043063            7 RDGGKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGKSL   74 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~~l   74 (301)
                      +++-|+..|..+|.+..+|++.+        ++    .+..+.+.|+.|...|+|.+....   + ..-.|++|+.++.+
T Consensus        42 ~~~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~i----s~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~  117 (145)
T 1xma_A           42 VDTIILSLLIEGDSYGYEISKNIRIKTDELYVI----KETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKY  117 (145)
T ss_dssp             HHHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCC----CHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHhhCCccCc----ChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHH
Confidence            45667777877899999998888        47    789999999999999999876321   0 11259999988765


Q ss_pred             h
Q 043063           75 V   75 (301)
Q Consensus        75 ~   75 (301)
                      .
T Consensus       118 l  118 (145)
T 1xma_A          118 Y  118 (145)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}

Probab=87.64  E-value=0.22  Score=37.82  Aligned_cols=64  Identities=19%  Similarity=0.175  Sum_probs=45.7

Q ss_pred             cccccccccccCC--CCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            5 ECRDGGKKGRLAN--TPLSASQILTRILPSGG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         5 ~a~~lglf~~L~~--g~~t~~ela~~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      |..+.-|++.|.+  ++.|++||.+.+.-..| .+..-+.|.|+.|+..|++.+...+++..+|...
T Consensus        13 T~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~g~~~Y~~~   79 (139)
T 3mwm_A           13 TRQRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAEGESVYRRC   79 (139)
T ss_dssp             HHHHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTTSCEEEECC
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCCCceEEEEC
Confidence            4556778888864  68999999998842111 1577899999999999999987422123467654

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=87.64  E-value=1.6  Score=36.36  Aligned_cols=89  Identities=13%  Similarity=0.110  Sum_probs=53.2

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhh----CCC--CCceeEEeC-CCCccCCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE----APS--IPGVTHIGG-DMFKSIPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~----a~~--~~ri~~~~g-d~~~~~p~-~D  205 (301)
                      .++.+.+ .+....+|||+||+.|               +.+|+-..-..    .+.  .+-|+|..+ |++.--|. .|
T Consensus        68 ~ei~ek~-~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~D  146 (267)
T 3p8z_A           68 QWFVERN-MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKCD  146 (267)
T ss_dssp             HHHHHTT-SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCCS
T ss_pred             HHHHHhc-CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCcccc
Confidence            4555566 3777789999999995               34565211111    111  278999999 97654333 58


Q ss_pred             EeeHhhhhccCCh--HHH---HHHHHHHHHhCCCCCEEEE
Q 043063          206 AIFMKWVLTTWTD--DEC---KLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       206 ~v~~~~vlh~~~d--~~~---~~iL~~~~~aL~pgg~lli  240 (301)
                      +++|-.-= --+.  -+.   .++|.-+.+.|++ |-+.|
T Consensus       147 tllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~  184 (267)
T 3p8z_A          147 TLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCI  184 (267)
T ss_dssp             EEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEE
T ss_pred             EEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEE
Confidence            87764433 1122  122   3467777788988 55555

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=87.28  E-value=0.89  Score=36.85  Aligned_cols=76  Identities=8%  Similarity=-0.042  Sum_probs=45.9

Q ss_pred             CcceEEeecCCce------------eeeeh-hHHHhhCC-------C--CCceeEEeCCCCcc-----------------
Q 043063          160 GVKRLVDVGGSAG------------INFDL-PEVVAEAP-------S--IPGVTHIGGDMFKS-----------------  200 (301)
Q Consensus       160 ~~~~vlDvGgG~g------------~~~Dl-p~v~~~a~-------~--~~ri~~~~gd~~~~-----------------  200 (301)
                      +..+||+||+|..            +-+|. ++..+.++       .  .++|+++.||..+.                 
T Consensus        30 ~a~~VLEiGtGySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~  109 (202)
T 3cvo_A           30 EAEVILEYGSGGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPD  109 (202)
T ss_dssp             HCSEEEEESCSHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTH
T ss_pred             CCCEEEEECchHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHH
Confidence            4579999999872            23453 44433332       2  46899999995431                 


Q ss_pred             -------CC--c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          201 -------IP--A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       201 -------~p--~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                             .+  . .|+|++-.-       .....+..+.+.|+|||.|++-+
T Consensus       110 ~~~~i~~~~~~~~fDlIfIDg~-------k~~~~~~~~l~~l~~GG~Iv~DN  154 (202)
T 3cvo_A          110 YPLAVWRTEGFRHPDVVLVDGR-------FRVGCALATAFSITRPVTLLFDD  154 (202)
T ss_dssp             HHHGGGGCTTCCCCSEEEECSS-------SHHHHHHHHHHHCSSCEEEEETT
T ss_pred             HhhhhhccccCCCCCEEEEeCC-------CchhHHHHHHHhcCCCeEEEEeC
Confidence                   11  1 388776541       11244455667899999885444

>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0

Probab=87.26  E-value=0.17  Score=36.65  Aligned_cols=63  Identities=19%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             ccccccccCCCCCCHHHHHHHh----CCCCCCCcccHHHHHHHHhcCcceeccccccCCC----eEecChhchhhh
Q 043063            8 DGGKKGRLANTPLSASQILTRI----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGER----KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~----~y~~t~~s~~l~   75 (301)
                      ++-|+..|..+|.+-.+|++.+    ++    ++..+.+.|+.|...|+|+..... .++    .|++|+.++...
T Consensus        11 ~~~IL~~L~~~~~~gyel~~~l~~~~~i----~~~tly~~L~~Le~~GlI~~~~~~-~~~r~r~~y~LT~~G~~~l   81 (108)
T 3l7w_A           11 EYLILAIVSKHDSYGYDISQTIKLIASI----KESTLYPILKKLEKAGYLSTYTQE-HQGRRRKYYHLTDSGEKHL   81 (108)
T ss_dssp             HHHHHHHHHHSCEEHHHHHHHHTTTCCC----CHHHHHHHHHHHHHTTSEEEEEEE-ETTEEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHhCC----CcChHHHHHHHHHHCCCeEEEeec-CCCCcceEEEECHHHHHHH
Confidence            4456667777888888888875    67    788999999999999999976321 022    499999887644

>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A

Probab=87.07  E-value=0.49  Score=39.07  Aligned_cols=47  Identities=19%  Similarity=0.332  Sum_probs=41.0

Q ss_pred             CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      +..+||+.+++    ++..+.+.|+.|...|++.+.+    +..+.+|+.++.+.
T Consensus        26 ~~~~La~~l~v----s~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~   72 (230)
T 1fx7_A           26 LRARIAERLDQ----SGPTVSQTVSRMERDGLLRVAG----DRHLELTEKGRALA   72 (230)
T ss_dssp             CHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT----TSCEEECHHHHHHH
T ss_pred             cHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CccEEECHHHHHHH
Confidence            34999999999    7899999999999999999983    56799999887654

>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61

Probab=86.88  E-value=0.24  Score=39.30  Aligned_cols=63  Identities=19%  Similarity=0.201  Sum_probs=47.9

Q ss_pred             cccccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceeccccc--c--CCCeEecChhchh
Q 043063            7 RDGGKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHREF--G--GERKYSLTEIGKS   73 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~--~~~~y~~t~~s~~   73 (301)
                      +++-|+..|..+|.+..+|++.+        ++    ++..+.+.|+-|...|+|+.....  +  ..-.|++|+.++.
T Consensus         3 l~~~iL~lL~~~~~~gyel~~~l~~~~~~~~~~----s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~~G~~   77 (179)
T 1yg2_A            3 LPHVILTVLSTRDATGYDITKEFSASIGYFWKA----SHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQAGRS   77 (179)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTTGGGGTCCC----CHHHHHHHHHHHHHTTSEEECCC---------CEEECHHHHH
T ss_pred             hHHHHHHHHhcCCCCHHHHHHHHHHHhCCccCC----CcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeChHHHH
Confidence            34556677777899999999999        46    688999999999999999865321  0  1125999999963

>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6

Probab=86.69  E-value=0.42  Score=33.94  Aligned_cols=54  Identities=22%  Similarity=0.199  Sum_probs=40.1

Q ss_pred             cccccc-ccCCC-CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            8 DGGKKG-RLANT-PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         8 ~lglf~-~L~~g-~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      +..|.+ .+..| .+ |..+||+.+|+    ...-+++-|+.|...|++...+    +..|..++
T Consensus        21 ~~~I~~~~l~~g~~lps~~eLa~~~~v----Sr~tvr~al~~L~~~Gli~~~~----g~G~~v~~   77 (102)
T 1v4r_A           21 RTLIKSGELAPGDTLPSVADIRAQFGV----AAKTVSRALAVLKSEGLVSSRG----ALGTVVEK   77 (102)
T ss_dssp             HHHTTTTSCCTTSBCCCHHHHHHHSSS----CTTHHHHHTTTTTTSSCCEEET----TTEEESCS
T ss_pred             HHHHHhCCCCCcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEeC----CCeEEEcc
Confidence            344555 44444 44 99999999999    6889999999999999998873    34455443

>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}

Probab=86.60  E-value=0.44  Score=42.57  Aligned_cols=53  Identities=19%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      +..|++.|..+|.++++|++++|+    +...+...|-.|.-.|++.+.    .+++|+++
T Consensus       330 ~~~vl~~l~~~~~~~D~l~~~~gl----~~~~v~~~L~~LEl~G~v~~~----~Gg~~~~~  382 (382)
T 3maj_A          330 RTRILALLGPSPVGIDDLIRLSGI----SPAVVRTILLELELAGRLERH----GGSLVSLS  382 (382)
T ss_dssp             HHHHHHHCCSSCEEHHHHHHHHCC----CHHHHHHHHHHHHHTTCCEEC----TTSEEEC-
T ss_pred             HHHHHHhhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHhCCcEEeC----CCceEecC
Confidence            446888998889999999999999    788999999999999999998    47788764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=86.47  E-value=0.22  Score=46.89  Aligned_cols=20  Identities=10%  Similarity=0.026  Sum_probs=16.9

Q ss_pred             HHHHHHHHhCCCCCEEEEec
Q 043063          223 LIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       223 ~iL~~~~~aL~pgg~lli~e  242 (301)
                      .+++++.+.|+|||++.++-
T Consensus       376 ~Fl~~~l~~Lk~gGr~aiVl  395 (544)
T 3khk_A          376 AWMLHMLYHLAPTGSMALLL  395 (544)
T ss_dssp             HHHHHHHHTEEEEEEEEEEE
T ss_pred             HHHHHHHHHhccCceEEEEe
Confidence            58899999999999877664

>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}

Probab=86.04  E-value=1.3  Score=27.75  Aligned_cols=44  Identities=16%  Similarity=0.224  Sum_probs=38.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      ..+|+.|+|+..++    .-...+.-|+-|.+.|-+.+.     ..+|++.|-
T Consensus        17 QGMTaGEVAA~f~w----~Le~ar~aLeqLf~~G~LRKR-----sSRYrlkph   60 (68)
T 3i71_A           17 QGMTAGEVAAHFGW----PLEKARNALEQLFSAGTLRKR-----SSRYRLKPH   60 (68)
T ss_dssp             TCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----CCEEEECC-
T ss_pred             ccccHHHHHHHhCC----cHHHHHHHHHHHHhcchhhhh-----ccccccCcc
Confidence            57899999999999    677888899999999999987     679998773

>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0

Probab=86.03  E-value=0.3  Score=35.89  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=48.4

Q ss_pred             ccccccccCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhchhhh
Q 043063            8 DGGKKGRLANTPLSASQILTRI------LPSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~~l~   75 (301)
                      ++=|+..|.++|.+--+|++.+      ++    ++..+...|+-|...|+|+.....   + ..-.|++|+.++...
T Consensus        15 ~~~IL~lL~~~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l   88 (116)
T 3hhh_A           15 EGLVLAIIQRKETYGYEITKILNDQGFTEI----VEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL   88 (116)
T ss_dssp             HHHHHHHHHHSCBCHHHHHHHHHTTSCSSC----CHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence            4445666777899999999998      56    788999999999999999875311   0 112599999987544

>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...

Probab=86.01  E-value=0.7  Score=38.07  Aligned_cols=47  Identities=15%  Similarity=0.297  Sum_probs=41.3

Q ss_pred             CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           21 SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        21 t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      +..+||+.+++    ++..+.+.++.|...|++.+.+    ...+.+|+.++.+.
T Consensus        26 ~~~~la~~l~v----s~~tvs~~l~~Le~~GlV~r~~----~~~v~LT~~G~~~~   72 (226)
T 2qq9_A           26 LRARIAERLEQ----SGPTVSQTVARMERDGLVVVAS----DRSLQMTPTGRTLA   72 (226)
T ss_dssp             BHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEECT----TSBEEECHHHHHHH
T ss_pred             cHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeC----CCCeEECHHHHHHH
Confidence            55999999999    7899999999999999999983    56799999987654

>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}

Probab=85.72  E-value=0.17  Score=37.23  Aligned_cols=66  Identities=14%  Similarity=0.232  Sum_probs=49.4

Q ss_pred             cccccccccCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhchhhhc
Q 043063            7 RDGGKKGRLANTPLSASQILTRIL------PSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGKSLVT   76 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~~l~~   76 (301)
                      +++-|+..|..+|.+.-+|++.+.      +    .+..+...|+.|...|+|+.....   + ..-.|++|+.++....
T Consensus        15 l~~~IL~lL~~~p~~gyel~~~l~~~~~~~i----~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~   90 (117)
T 3elk_A           15 ITLYILKELVKRPMHGYELQKSMFETTGQAL----PQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLC   90 (117)
T ss_dssp             HHHHHHHHHHHSCEEHHHHHHHHHHHHSCCC----CTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHhCCCC----CcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHH
Confidence            345566777778999999998886      6    578999999999999999866320   0 1125999999975443

>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}

Probab=85.44  E-value=0.36  Score=37.16  Aligned_cols=64  Identities=17%  Similarity=0.277  Sum_probs=45.3

Q ss_pred             cccccccccccCC---CCCCHHHHHHHhCCCCC-CCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            5 ECRDGGKKGRLAN---TPLSASQILTRILPSGG-GDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         5 ~a~~lglf~~L~~---g~~t~~ela~~~~~~~~-~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      |..+.-|++.|.+   ++.|++||.+.+.-..| -+..-+.|.|+.|+..|++.+...+++..+|.++
T Consensus        16 T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   83 (150)
T 2w57_A           16 TLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEGGKSVFELS   83 (150)
T ss_dssp             CHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGGGCEEEEEC
T ss_pred             CHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence            5566778888864   58999999999832111 0577899999999999999987421122357653

>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85

Probab=85.33  E-value=0.19  Score=35.22  Aligned_cols=47  Identities=6%  Similarity=0.034  Sum_probs=39.6

Q ss_pred             ccccccccccCC---CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            6 CRDGGKKGRLAN---TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         6 a~~lglf~~L~~---g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .-++.|+..|..   ..++..+|++++++    +..-+.+.|+.|...|+|.+.
T Consensus        20 ~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l----~~~tvt~iLk~LE~kglIkr~   69 (91)
T 2dk5_A           20 NQEKLVYQIIEDAGNKGIWSRDVRYKSNL----PLTEINKILKNLESKKLIKAV   69 (91)
T ss_dssp             SSHHHHHHHHHHHCTTCEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHcCCCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            445567777763   37899999999999    899999999999999999955

>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*

Probab=85.22  E-value=0.32  Score=35.67  Aligned_cols=64  Identities=22%  Similarity=0.227  Sum_probs=47.6

Q ss_pred             ccccccccCCCCCCHHHHHHHh--------CCCCCCCcccHHHHHHHHhcCcceecccc---cc-CCCeEecChhchhhh
Q 043063            8 DGGKKGRLANTPLSASQILTRI--------LPSGGGDAENLQRILRLLTNYGVFSEHRE---FG-GERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~--------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~-~~~~y~~t~~s~~l~   75 (301)
                      ++=|+..|.++|.+--+|.+.+        ++    ++..+...|+.|...|+|+....   ++ ..-.|++|+.++...
T Consensus        14 ~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i----~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l   89 (116)
T 3f8b_A           14 NVILLNVLKQGDNYVYGIIKQVKEASNGEMEL----NEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENM   89 (116)
T ss_dssp             HHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCC----CHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCC----CcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHH
Confidence            3345566767899999999887        56    78899999999999999997531   11 112599999987644

>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39

Probab=85.04  E-value=0.22  Score=37.68  Aligned_cols=54  Identities=11%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             ccccccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            4 NECRDGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         4 ~~a~~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      -+..+..|+..|..  ++.|..+|++.++...+.++..+.++|+-|...|+|.+.+
T Consensus         7 lt~~e~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~r~~   62 (138)
T 2g9w_A            7 LGDLERAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVLQIR   62 (138)
T ss_dssp             CCHHHHHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred             CCHHHHHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEEEEe
Confidence            34556777888853  7899999999998210016889999999999999999874

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=84.98  E-value=2.5  Score=36.25  Aligned_cols=90  Identities=17%  Similarity=0.184  Sum_probs=52.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeehhHHHhh----CCC--CCceeEEeC-CCCccCCc-cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAE----APS--IPGVTHIGG-DMFKSIPA-AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dlp~v~~~----a~~--~~ri~~~~g-d~~~~~p~-~D  205 (301)
                      .++.+.+. +....+||||||+.|               +.+|+-..-..    .++  ..-|.|+.+ |++.--|. .|
T Consensus        84 ~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~D  162 (321)
T 3lkz_A           84 RWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECCD  162 (321)
T ss_dssp             HHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCCS
T ss_pred             HHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCCC
Confidence            44555553 677789999999995               34555111000    011  134889998 87654333 58


Q ss_pred             EeeHhhhhccCChH--H---HHHHHHHHHHhCCCC-CEEEE
Q 043063          206 AIFMKWVLTTWTDD--E---CKLIMENCYKAIPAG-GKLIA  240 (301)
Q Consensus       206 ~v~~~~vlh~~~d~--~---~~~iL~~~~~aL~pg-g~lli  240 (301)
                      +++|--. .--+..  +   ..++|.-+-+.|+++ |-+.|
T Consensus       163 ~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~  202 (321)
T 3lkz_A          163 TLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCV  202 (321)
T ss_dssp             EEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred             EEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEE
Confidence            7776443 222221  2   234677777889888 76555

>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}

Probab=84.91  E-value=0.31  Score=35.82  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=48.5

Q ss_pred             ccccccccCCCCCCHHHHHHHh------CCCCCCCcccHHHHHHHHhcCcceecccc---cc-CCCeEecChhchhhh
Q 043063            8 DGGKKGRLANTPLSASQILTRI------LPSGGGDAENLQRILRLLTNYGVFSEHRE---FG-GERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~------~~~~~~~~~~l~~lL~~L~~~g~l~~~~~---~~-~~~~y~~t~~s~~l~   75 (301)
                      ++=|+..|..+|.+.-+|++.+      ++    ++..+...|+.|...|+|+....   ++ ..-.|++|+.++...
T Consensus        13 ~~~IL~lL~~~p~~Gyei~~~l~~~g~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l   86 (117)
T 4esf_A           13 EGCVLEIISRRETYGYEITRHLNDLGFTEV----VEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQEL   86 (117)
T ss_dssp             HHHHHHHHHHSCBCHHHHHHHHHHHTCTTC----CHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHcCCCCC----CccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHH
Confidence            3445666777899999999988      67    78999999999999999987631   10 112599999987544

>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1

Probab=84.83  E-value=0.61  Score=37.19  Aligned_cols=54  Identities=17%  Similarity=0.183  Sum_probs=43.9

Q ss_pred             ccccccccC-C-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc-eeccccccCCCeEecChh
Q 043063            8 DGGKKGRLA-N-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGV-FSEHREFGGERKYSLTEI   70 (301)
Q Consensus         8 ~lglf~~L~-~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~y~~t~~   70 (301)
                      ...|++.|. . ++.|..+||+.+|+    ..+-+++-++.|...|+ +...     .+.|.+++.
T Consensus        23 ~~~Il~~L~~~~~~~s~~eLa~~l~v----S~~Ti~rdi~~L~~~G~~I~~~-----~~Gy~l~~~   79 (187)
T 1j5y_A           23 LKSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAGG   79 (187)
T ss_dssp             HHHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE-----TTEEECCTT
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEE-----CCEEEECCc
Confidence            345777785 3 56999999999999    69999999999999999 7665     467888764

>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2

Probab=84.42  E-value=0.57  Score=38.64  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      ++.|..++|+++++    .+..+.+.++.|...|+|.+.... ....+++|+.++.+..
T Consensus        26 ~~~s~s~aA~~L~i----sq~avSr~I~~LE~~~L~~R~~~~-R~~~v~LT~~G~~l~~   79 (230)
T 3cta_A           26 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVLY   79 (230)
T ss_dssp             EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHHH
T ss_pred             CCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEEEcC-CeEEEEECHHHHHHHH
Confidence            45889999999999    788999999999999999987311 1346889998876653

>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}

Probab=84.42  E-value=0.56  Score=37.71  Aligned_cols=35  Identities=20%  Similarity=0.148  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      -|.|..|||+++|+    ....+.+.|+.|...|++.+.
T Consensus        23 ~~~s~~eia~~lgl----~~~tv~~~l~~Le~~G~i~~~   57 (196)
T 3k2z_A           23 YPPSVREIARRFRI----TPRGALLHLIALEKKGYIERK   57 (196)
T ss_dssp             SCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECC
T ss_pred             CCCCHHHHHHHcCC----CcHHHHHHHHHHHHCCCEEec
Confidence            37899999999999    566899999999999999987

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=84.35  E-value=0.58  Score=51.97  Aligned_cols=81  Identities=16%  Similarity=0.113  Sum_probs=30.3

Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHH
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQ  283 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~  283 (301)
                      +|+|+++++||.-++.  ...|+++++.|+|||++++.+......-...+     .+++..-    ..++...+.++|.+
T Consensus      1312 ydlvia~~vl~~t~~~--~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~-----~~~~~~~----r~~~~~~~~~~w~~ 1380 (2512)
T 2vz8_A         1312 ADLLVCNCALATLGDP--AVAVGNMAATLKEGGFLLLHTLLAGHPLGEMV-----GFLTSPE----QGGRHLLSQDQWES 1380 (2512)
T ss_dssp             CCEEEEECC----------------------CCEEEEEEC-----------------------------------CTTTT
T ss_pred             eeEEEEcccccccccH--HHHHHHHHHhcCCCcEEEEEeccccccccccc-----ccccccc----ccCCcccCHHHHHH
Confidence            4999999999976654  47899999999999999998754311000000     0000000    01122347788999


Q ss_pred             HHHhCCCCceEE
Q 043063          284 LGFSAGFPHLRL  295 (301)
Q Consensus       284 ~l~~aGf~~~~~  295 (301)
                      +|.++||..+..
T Consensus      1381 ~l~~~gf~~~~~ 1392 (2512)
T 2vz8_A         1381 LFAGASLHLVAL 1392 (2512)
T ss_dssp             SSTTTTEEEEEE
T ss_pred             HHHhCCCceeee
Confidence            999999977654

>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}

Probab=84.25  E-value=0.31  Score=37.50  Aligned_cols=60  Identities=22%  Similarity=0.223  Sum_probs=44.8

Q ss_pred             cccccccccccC--CCCCCHHHHHHHh-----CCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            5 ECRDGGKKGRLA--NTPLSASQILTRI-----LPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         5 ~a~~lglf~~L~--~g~~t~~ela~~~-----~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      |..+.-|++.|.  .++.|++||.+.+     ++    +..-+.|.|+.|+..|++.+....++..+|..+
T Consensus        26 T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~i----s~aTVYR~L~~L~e~Glv~~~~~~~~~~~Y~~~   92 (150)
T 2xig_A           26 SKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNT----SISSVYRILNFLEKENFISVLETSKSGRRYEIA   92 (150)
T ss_dssp             HHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEETTTEEEEEES
T ss_pred             CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCC----CHhhHHHHHHHHHHCCcEEEEEeCCCceEEEec
Confidence            455667888885  3689999999998     55    677999999999999999987422122347653

>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*

Probab=84.10  E-value=0.26  Score=35.17  Aligned_cols=39  Identities=10%  Similarity=0.000  Sum_probs=31.0

Q ss_pred             ccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHh
Q 043063            6 CRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLT   48 (301)
Q Consensus         6 a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~   48 (301)
                      +.++||+..|.+|+.|..|||+.+|+    ....+.|+=++|.
T Consensus        45 ~~R~~l~~~L~~ge~TQREIA~~lGi----S~stISRi~r~L~   83 (101)
T 1jhg_A           45 GTRVRIIEELLRGEMSQRELKNELGA----GIATITRGSNSLK   83 (101)
T ss_dssp             HHHHHHHHHHHHCCSCHHHHHHHHCC----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcCHHHHHHHHCC----ChhhhhHHHHHHH
Confidence            45789999998888999999999999    5666666655553

>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}

Probab=83.43  E-value=0.3  Score=35.80  Aligned_cols=65  Identities=9%  Similarity=0.111  Sum_probs=48.8

Q ss_pred             cccccccccCCCCCCHHHHHHHhC------CCCCCCcccHHHHHHHHhcCcceeccccccCC----CeEecChhchhhh
Q 043063            7 RDGGKKGRLANTPLSASQILTRIL------PSGGGDAENLQRILRLLTNYGVFSEHREFGGE----RKYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~------~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~----~~y~~t~~s~~l~   75 (301)
                      +++-|+..|..+|.+--+|++.+.      +    ++..+...|+.|...|+|+......++    -.|++|+.++...
T Consensus        10 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~i----s~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l   84 (115)
T 4esb_A           10 LEGCILYIISQEEVYGYELSTKLNKHGFTFV----SEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL   84 (115)
T ss_dssp             HHHHHHHHHHHSCEEHHHHHHHHHHTTCTTC----CHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCC----CcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence            344566677778999999999885      6    788999999999999999875311011    2499999987644

>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A

Probab=83.06  E-value=0.18  Score=37.27  Aligned_cols=53  Identities=9%  Similarity=0.118  Sum_probs=41.4

Q ss_pred             cccccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            5 ECRDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         5 ~a~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      +..+..++..|.. +|.|..+|++.++...+.++..+.++|+-|...|+|.+.+
T Consensus         9 t~~q~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~   62 (126)
T 1sd4_A            9 SMAEWDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYK   62 (126)
T ss_dssp             CHHHHHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred             CHHHHHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEe
Confidence            4456667777764 7899999999997310115789999999999999999884

>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8

Probab=82.87  E-value=0.24  Score=43.74  Aligned_cols=61  Identities=11%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcC
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTD   77 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~   77 (301)
                      +..|+..|.. ++.|..+||+.+++    ++.-++|.|+.|...|++.+.     .....+|+.++.+...
T Consensus        22 ~~~iL~~l~~~~~~t~~eLa~~l~v----s~~Tv~r~l~~Le~~Glv~~~-----~~gi~LT~~G~~~~~~   83 (345)
T 2o0m_A           22 RFQILRNIYWMQPIGRRSLSETMGI----TERVLRTETDVLKQLNLIEPS-----KSGMTLTERGLEVYQG   83 (345)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE-----ecceEEcHHHHHHHHH
Confidence            3456777764 78999999999999    788999999999999999855     2347788888765543

>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28

Probab=82.64  E-value=0.35  Score=40.67  Aligned_cols=64  Identities=9%  Similarity=0.073  Sum_probs=48.5

Q ss_pred             cccccccccCC-C--CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            7 RDGGKKGRLAN-T--PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         7 ~~lglf~~L~~-g--~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      .++.++..|.. +  +.|..+||+.+++    ++..+.++++-|...|+|.+.+.. .+.   ...+|+.++.+.
T Consensus       159 ~q~~vL~~L~~~~~~~~t~~eLa~~l~i----~~~tvt~~v~rLe~~GlV~R~~~~-~DrR~~~i~LT~~G~~~~  228 (250)
T 1p4x_A          159 VEFTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERST-EDERKILIHMDDAQQDHA  228 (250)
T ss_dssp             HHHHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECS-SSTTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCcCHHHHHHHHCC----ChhhHHHHHHHHHHCCCEEeeCCC-CCCCeEEEEECHHHHHHH
Confidence            34455666653 2  5899999999999    899999999999999999987532 111   467788876654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=82.52  E-value=0.98  Score=38.85  Aligned_cols=81  Identities=17%  Similarity=0.200  Sum_probs=46.9

Q ss_pred             CCCcceEEeecCCc------e------------ee--eehhHHHhhCCCCCceeEEeCCCCcc-CCc-ccEeeHhh----
Q 043063          158 FKGVKRLVDVGGSA------G------------IN--FDLPEVVAEAPSIPGVTHIGGDMFKS-IPA-ADAIFMKW----  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~------g------------~~--~Dlp~v~~~a~~~~ri~~~~gd~~~~-~p~-~D~v~~~~----  211 (301)
                      .....+|||+|+|+      |            ++  .|+.++...+    . .++.||..+. ... .|+|+.=.    
T Consensus       107 vp~gmrVLDLGA~s~kg~APGS~VLr~~~p~g~~VVavDL~~~~sda----~-~~IqGD~~~~~~~~k~DLVISDMAPNt  181 (344)
T 3r24_A          107 VPYNMRVIHFGAGSDKGVAPGTAVLRQWLPTGTLLVDSDLNDFVSDA----D-STLIGDCATVHTANKWDLIISDMYDPR  181 (344)
T ss_dssp             CCTTCEEEEESCCCTTSBCHHHHHHHHHSCTTCEEEEEESSCCBCSS----S-EEEESCGGGEEESSCEEEEEECCCCTT
T ss_pred             ecCCCEEEeCCCCCCCCCCCcHHHHHHhCCCCcEEEEeeCcccccCC----C-eEEEccccccccCCCCCEEEecCCCCc
Confidence            34678999999866      1            22  3443333221    1 4488886544 222 47665321    


Q ss_pred             ---hhccC--ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          212 ---VLTTW--TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       212 ---vlh~~--~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                         +-++-  +..-+..+|.=+.+.|+|||.+++-=+
T Consensus       182 TG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF  218 (344)
T 3r24_A          182 TKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  218 (344)
T ss_dssp             SCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence               11111  222366778888899999999987644

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=82.37  E-value=0.72  Score=39.41  Aligned_cols=51  Identities=29%  Similarity=0.397  Sum_probs=38.0

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--CCceeEEeCCCCc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--IPGVTHIGGDMFK  199 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~  199 (301)
                      .+++++.+. ..+...+||.+||.|             +++|. |..++.+++  .+|++++.+||.+
T Consensus        11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~   77 (285)
T 1wg8_A           11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH   77 (285)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred             HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence            456666664 777789999999995             67898 777755432  2699999999864

>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66

Probab=82.37  E-value=0.68  Score=33.05  Aligned_cols=44  Identities=25%  Similarity=0.207  Sum_probs=36.5

Q ss_pred             cccccccCCC-CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            9 GGKKGRLANT-PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         9 lglf~~L~~g-~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..|+..|..| .+ |..+||+.+|+    ...-+++-|+.|...|+|...
T Consensus        31 ~~I~~~l~~g~~lps~~eLa~~lgV----Sr~tVr~al~~L~~~GlI~~~   76 (102)
T 2b0l_A           31 EHIFEELDGNEGLLVASKIADRVGI----TRSVIVNALRKLESAGVIESR   76 (102)
T ss_dssp             HHHTTSSBTTEEEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHhhhcCCCcCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            3455566544 45 99999999999    688999999999999999877

>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}

Probab=81.79  E-value=1  Score=34.00  Aligned_cols=34  Identities=15%  Similarity=0.137  Sum_probs=31.7

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..|.++||+++|+    ++..+.+.|..|...|+|...
T Consensus        51 ~ps~~~LA~~~~~----s~~~v~~~L~~L~~KGlI~i~   84 (135)
T 2v79_A           51 FPTPNQLQEGMSI----SVEECTNRLRMFIQKGFLFIE   84 (135)
T ss_dssp             SCCHHHHHTTSSS----CHHHHHHHHHHHHHHTSCEEE
T ss_pred             CCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEE
Confidence            4699999999999    899999999999999999984

>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*

Probab=81.65  E-value=1.1  Score=39.05  Aligned_cols=56  Identities=21%  Similarity=0.132  Sum_probs=45.3

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .+..|++.|.+ ++.|.++||+++++    .+..++|-|+.|...|++.+..   .+..|++.+
T Consensus         6 r~~~Il~~L~~~~~~s~~eLa~~l~v----S~~ti~r~l~~L~~~G~~i~~~---~g~GY~l~~   62 (321)
T 1bia_A            6 VPLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV---PGKGYSLPE   62 (321)
T ss_dssp             HHHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE---TTTEEECSS
T ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHCC----CHHHHHHHHHHHHhCCCcEEEe---cCCCcEEee
Confidence            35567888876 67999999999999    6999999999999999986543   244788864

>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A

Probab=80.53  E-value=0.71  Score=38.32  Aligned_cols=53  Identities=9%  Similarity=0.061  Sum_probs=43.9

Q ss_pred             cccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            9 GGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         9 lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .-|.-.|..|+.|.++||..+|+    ++.-+...|.-|...|++.+.    .+++..+..
T Consensus       168 ~~l~~~l~~~~~t~~~la~~~~l----~~~~V~~~l~~L~~~~~v~~~----~~~~~~~~~  220 (232)
T 2qlz_A          168 AILHYLLLNGRATVEELSDRLNL----KEREVREKISEMARFVPVKII----NDNTVVLDE  220 (232)
T ss_dssp             HHHHHHHHSSEEEHHHHHHHHTC----CHHHHHHHHHHHTTTSCEEEE----TTTEEEECH
T ss_pred             HHHHHHHhcCCCCHHHHHHHhCc----CHHHHHHHHHHHHhcCCeEEe----cCCeEEecH
Confidence            33445566789999999999999    799999999999999999876    367776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	301
d1fp1d2	244	c.66.1.12 (D:129-372) Chalcone O-methyltransferase	2e-53
d1fp2a2	244	c.66.1.12 (A:109-352) Isoflavone O-methyltransfera	5e-51
d1kyza2	243	c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli	2e-48
d1qzza2	256	c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase	5e-20
d1tw3a2	253	c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf	2e-18
d1fp1d1	110	a.4.5.29 (D:19-128) Chalcone O-methyltransferase {	4e-10
d1kyza1	107	a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic	4e-10
d1fp2a1	101	a.4.5.29 (A:8-108) Isoflavone O-methyltransferase	4e-09
d1tw3a1	85	a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransfer	2e-06
d1qzza1	92	a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase R	4e-05

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  172 bits (438), Expect = 2e-53
 Identities = 77/229 (33%), Positives = 123/229 (53%), Gaps = 17/229 (7%)

Query: 84  APYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGV 143
           A +       AL+  W    EA++D  I+ F  VHG   Y + GK  +MN +  K+M  V
Sbjct: 5   ASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDV 64

Query: 144 SVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPSIP 188
               M  +L+ Y GF+G+  LVDVGG +G               INFDLP+V+  AP + 
Sbjct: 65  CATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLS 124

Query: 189 GVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD 248
           G+ H+GGDMF S+P  DA+ +K V   W+D++C   + NC+KA+   GK+I  E +LP++
Sbjct: 125 GIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEE 184

Query: 249 SNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR 297
            N S+ ++ +   D  +       G+  TE+++++L   +GF   ++  
Sbjct: 185 PNTSEESKLVSTLDNLMFITV--GGRERTEKQYEKLSKLSGFSKFQVAC 231

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  166 bits (421), Expect = 5e-51
 Identities = 68/236 (28%), Positives = 110/236 (46%), Gaps = 21/236 (8%)

Query: 82  SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMS 141
             AP V       L  ++  + + I +  +  F    G   + +  K PE N     AM+
Sbjct: 2   CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMA 61

Query: 142 GVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS 186
             S     ++ D    F G++ +VDVGG  G               I FD P+VV     
Sbjct: 62  SDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSG 121

Query: 187 IPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIP---AGGKLIACEP 243
              +T++GGDMF SIP ADA+ +K++L  WTD +C  I++ C +A+      GK+   + 
Sbjct: 122 SNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDM 181

Query: 244 VLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL 299
           V+    +E+Q T+  L  D+ +  +    GK   E+E+K+L   AGF H ++  + 
Sbjct: 182 VIDKKKDENQVTQIKLLMDVNMACL---NGKERNEEEWKKLFIEAGFQHYKISPLT 234

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score =  159 bits (404), Expect = 2e-48
 Identities = 93/234 (39%), Positives = 131/234 (55%), Gaps = 17/234 (7%)

Query: 80  GQSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKA 139
           G S +   L +    LM +W  + +A+LD  I PF K +G   + Y+G  P  N +  K 
Sbjct: 2   GVSISALNLMNQDKVLMESWYHLKDAVLDGGI-PFNKAYGMTAFEYHGTDPRFNKVFNKG 60

Query: 140 MSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEA 184
           MS  S   M  IL+ Y GF+G+K LVDVGG  G               INFDLP V+ +A
Sbjct: 61  MSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDA 120

Query: 185 PSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244
           PS PGV H+GGDMF SIP ADA+FMKW+   W+D+ C   ++NCY+A+P  GK+I  E +
Sbjct: 121 PSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECI 180

Query: 245 LPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
           LP   + S  T+ ++  D  +M  +   GK  T++EF+ L   AGF   +++  
Sbjct: 181 LPVAPDSSLATKGVVHID-VIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCN 233

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 85.0 bits (209), Expect = 5e-20
 Identities = 41/234 (17%), Positives = 74/234 (31%), Gaps = 29/234 (12%)

Query: 88  LQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPF 147
           L         A+  + + +       +   +G P +        +       MS      
Sbjct: 11  LNGAVSHADLAFTGLLDVVRTGRP-AYAGRYGRPFWEDLSADVALADSFDALMSCDEDLA 69

Query: 148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDLPEVVAEA-------- 184
             +  D YD +  V+ ++DVGG  G                  +L      A        
Sbjct: 70  YEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAG 128

Query: 185 PSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV 244
            +       G         AD + + +VL  W+D++   I+  C +A+  GG+L+  +  
Sbjct: 129 LADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRA 188

Query: 245 LPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
             +     +    LL  D+ ++T     G+  T  E   L  SAG         
Sbjct: 189 DVEGDGADRFFSTLL--DLRMLTFMG--GRVRTRDEVVDLAGSAGLALASERTS 238

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 80.5 bits (197), Expect = 2e-18
 Identities = 40/224 (17%), Positives = 83/224 (37%), Gaps = 30/224 (13%)

Query: 98  AWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDG 157
           ++  + +AI       +  ++G+P Y      P++       ++        +    YD 
Sbjct: 20  SFTRLPDAIRTGRP-TYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD- 77

Query: 158 FKGVKRLVDVGGSAG---------------INFDLPEVVAEAPS--------IPGVTHIG 194
           +  V+ ++DVGG  G                  ++   V  A S               G
Sbjct: 78  WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEG 137

Query: 195 GDMFKSIPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQR 254
                    ADAI + +VL  W D +   I+  C +A+  GG+++  E     +++ +++
Sbjct: 138 DFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFNEQ 197

Query: 255 TRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRV 298
              L   D+ ++      G   T +++  L  SAG     + ++
Sbjct: 198 FTEL---DLRMLVFLG--GALRTREKWDGLAASAGLVVEEVRQL 236

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 110

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 16  ANTPLSASQILTRI--LPSGGGDAENLQRILRLLTNYGVFSEHRE----FGGERKYSLTE 69
               +S S+I +++            L R+LRLL +Y V +         G ER Y L+ 
Sbjct: 41  PGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM 100

Query: 70  IGKSLVTD 77
           +GK LV D
Sbjct: 101 VGKYLVPD 108

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 107

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 17  NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHRE----FGGERKYSLTEIGK 72
              +S  +I +++  +       L R+LRLL  Y + +           +R Y L  + K
Sbjct: 42  GAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAK 101

Query: 73  SLVTD 77
            LV +
Sbjct: 102 YLVKN 106

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 101

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 51.1 bits (122), Expect = 4e-09
 Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 15  LANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74
               P+S S +++  L        N++R++R L + G F    +   E  Y+LT   + L
Sbjct: 40  NHGKPISLSNLVSI-LQVPSSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELL 96

Query: 75  VTDAE 79
           V  ++
Sbjct: 97  VRGSD 101

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 85

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

 Score = 42.9 bits (101), Expect = 2e-06
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 15 LANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSL 74
          +     +   +  R         E L R++R L   G+  E        ++  TE+G+ L
Sbjct: 30 ILAGARTVKALAART----DTRPEALLRLIRHLVAIGLLEED----APGEFVPTEVGELL 81

Query: 75 VTD 77
            D
Sbjct: 82 ADD 84

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 92

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

 Score = 39.3 bits (92), Expect = 4e-05
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 6/62 (9%)

Query: 14 RLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKS 73
           L     + + +  R         + L R++R LT  GV     +    R    T +G  
Sbjct: 35 HLLAGADTLAGLADRT----DTHPQALSRLVRHLTVVGVLEGGEK--QGRPLRPTRLGML 88

Query: 74 LV 75
          L 
Sbjct: 89 LA 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	301
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	100.0
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	100.0
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	100.0
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	100.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	100.0
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.62
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.62
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.62
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.6
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.59
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.57
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.55
d1tw3a1	85	Carminomycin 4-O-methyltransferase {Streptomyces p	99.53
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.45
d1qzza1	92	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.39
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.39
d1fp2a1	101	Isoflavone O-methyltransferase {Alfalfa (Medicago	99.38
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.36
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.32
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.3
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.29
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.2
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.16
d1kyza1	107	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	99.15
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.14
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.13
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.11
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.07
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.07
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.07
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.02
d1fp1d1	110	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.99
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.98
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.95
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.85
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	98.84
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	98.79
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	98.75
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.74
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.7
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	98.6
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.59
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	98.58
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	98.57
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.55
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.53
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	98.53
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.46
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.41
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.38
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.38
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.28
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.24
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.15
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.14
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	98.14
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	98.14
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	98.1
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.07
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	97.78
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	97.76
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	97.76
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	97.06
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	96.99
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	96.92
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	96.84
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.75
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	96.65
d1r1ta_	98	SmtB repressor {Cyanobacteria (Synechococcus), pcc	96.57
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	96.54
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.49
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	96.43
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.39
d2h00a1	250	Methyltransferase 10 domain containing protein MET	96.31
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	96.29
d1r1ua_	94	Metal-sensing transcriptional repressor CzrA {Stap	96.27
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.27
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	96.25
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	96.21
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.05
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	96.02
d1ub9a_	100	Hypothetical protein PH1061 {Archaeon Pyrococcus h	96.01
d2hoea1	62	N-acetylglucosamine kinase {Thermotoga maritima [T	95.99
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.97
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	95.94
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	95.92
d1biaa1	63	Biotin repressor, N-terminal domain {Escherichia c	95.88
d1z05a1	71	Transcriptional regulator VC2007 N-terminal domain	95.72
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	95.65
d3ctaa1	85	Ta1064 (RFK), N-terminal domain {Thermoplasma acid	95.49
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	95.42
d2hzta1	95	Putative transcriptional regulator YtcD {Bacillus	95.41
d1lvaa3	64	C-terminal fragment of elongation factor SelB {Moo	95.36
d1r7ja_	90	Sso10a (SSO10449) {Archaeon Sulfolobus solfataricu	95.36
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	95.33
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	95.29
d1u2wa1	108	Cadmium efflux system accessory protein CadC {Stap	95.29
d1z6ra1	70	Mlc protein N-terminal domain {Escherichia coli [T	95.2
d2uyoa1	297	Putative methyltransferase ML2640 {Mycobacterium l	95.18
d2p4wa1	194	Transcriptional regulatory protein PF1790 {Pyrococ	95.09
d1ulya_	190	Hypothetical protein PH1932 {Pyrococcus horikoshii	95.06
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	95.05
d1xd7a_	127	Hypothetical protein ywnA {Bacillus subtilis [TaxI	95.05
d1ylfa1	138	Hypothetical protein BC1842 {Bacillus cereus [TaxI	94.67
d1j5ya1	65	Putative transcriptional regulator TM1602, N-termi	94.65
d2fswa1	102	Hypothetical protein PG0823 {Porphyromonas gingiva	94.44
d2gxba1	59	Z-alpha domain of dsRNA-specific adenosine deamina	94.19
d1yyva1	114	Putative transcriptional regulator YtfH {Salmonell	94.05
d1sfxa_	109	Hypothetical protein AF2008 {Archaeoglobus fulgidu	93.93
d2etha1	140	Putative transcriptional regulator TM0816 {Thermot	93.58
d1z7ua1	108	Hypothetical protein EF0647 {Enterococcus faecalis	93.4
d3broa1	135	Transcriptional regulator OEOE1854 {Oenococcus oen	93.35
d2f2ea1	142	Hypothetical protein PA1607 {Pseudomonas aeruginos	93.27
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	93.26
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	93.25
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	93.23
d1lnwa_	141	MexR repressor {Pseudomonas aeruginosa [TaxId: 287	93.08
d1s3ja_	143	Putative transcriptional regulator YusO {Bacillus	93.02
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	93.0
d1jgsa_	138	Multiple antibiotic resistance repressor, MarR {Es	92.9
d2a61a1	139	Transcriptional regulator TM0710 {Thermotoga marit	92.75
d2bv6a1	136	Transcriptional regulator MgrA {Staphylococcus aur	92.65
d2d1ha1	109	Hypothetical transcriptional regulator ST1889 {Sul	92.57
d2hr3a1	145	Probable transcriptional regulator PA3067 {Pseudom	92.54
d1i1ga1	60	LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.41
d2cyya1	60	Putative transcriptional regulator PH1519 {Archaeo	92.33
d2p8ta1	69	Hypothetical protein PH0730 {Pyrococcus horikoshii	92.29
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	92.19
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	92.18
d2cfxa1	63	Transcriptional regulator LrpC {Bacillus subtilis	92.01
d2fbia1	136	Probable transcriptional regulator PA4135 {Pseudom	91.87
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	91.7
d1ku9a_	151	DNA-binding protein Mj223 {Archaeon Methanococcus	91.68
d2fbha1	137	Transcriptional regulator PA3341 {Pseudomonas aeru	91.39
d1jhfa1	71	LexA repressor, N-terminal DNA-binding domain {Esc	91.29
d2cg4a1	63	Regulatory protein AsnC {Escherichia coli [TaxId:	91.27
d2ev0a1	61	Manganese transport regulator MntR {Bacillus subti	90.84
d1lj9a_	144	Transcriptional regulator SlyA {Enterococcus faeca	90.64
d2isya1	63	Iron-dependent regulator IdeR {Mycobacterium tuber	90.63
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	90.49
d1zyba1	73	Probable transcription regulator BT4300, C-termina	90.47
d3deua1	140	Transcriptional regulator SlyA {Salmonella typhimu	90.42
d1hsja1	115	Staphylococcal accessory regulator A homolog, SarR	90.22
d1sfua_	70	34L {Yaba-like disease virus, YLDV [TaxId: 132475]	88.91
d1xmka1	73	Z-alpha domain of dsRNA-specific adenosine deamina	88.48
d2frha1	115	Pleiotropic regulator of virulence genes, SarA {St	88.22
d2fxaa1	162	Protease production regulatory protein Hpr {Bacill	88.16
d2gaua1	81	Transcriptional regulator PG0396, C-terminal domai	87.59
d1i5za1	69	Catabolite gene activator protein (CAP), C-termina	87.38
d2zcwa1	82	Transcriptional regulator TTHA1359, C-terminal dom	87.36
d2obpa1	81	Putative DNA-binding protein ReutB4095 {Ralstonia	87.22
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	87.19
d1z91a1	137	Organic hydroperoxide resistance transcriptional r	87.0
d1p4xa1	125	Staphylococcal accessory regulator A homolog, SarS	86.94
d1p4xa2	125	Staphylococcal accessory regulator A homolog, SarS	86.65
d1j75a_	57	Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}	86.42
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	86.18
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	85.08
d1ft9a1	80	CO-sensing protein CooA, C-terminal domain {Rhodos	84.22
d2fnaa1	73	Hypothetical protein SSO1545, C-terminal domain {S	83.85
d3e5ua1	80	Chlorophenol reduction protein CprK {Desulfitobact	83.41
d2hs5a1	69	Putative transcriptional regulator RHA1_ro03477 {R	83.27
d1q1ha_	88	Transcription factor E/IIe-alpha, N-terminal domai	81.17
d1rjda_	328	Leucine carboxy methyltransferase Ppm1 {Baker's ye	80.92
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	80.09
d1hw1a1	74	Fatty acid responsive transcription factor FadR, N	80.06

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=5.9e-45  Score=310.62  Aligned_cols=216  Identities=36%  Similarity=0.686  Sum_probs=184.8

Q ss_pred             ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCc
Q 043063           82 SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGV  161 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~  161 (301)
                      |+++++.+++.|.++.+|.+|.+++++|.+++|+.++|.++|+|+.++|+..+.|+++|...+....+.+++.++.|++.
T Consensus         3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~   82 (244)
T d1fp1d2           3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI   82 (244)
T ss_dssp             CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred             cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence            78999999988999999999999999987678999999999999999999999999999998888889999999768999


Q ss_pred             ceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCChHHHHHHHH
Q 043063          162 KRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIME  226 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL~  226 (301)
                      .+|||||||+|               +++|+|++++.+...+||++++||+++++|.+|+|+++++||+|+|++|+++|+
T Consensus        83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~  162 (244)
T d1fp1d2          83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS  162 (244)
T ss_dssp             SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHH
T ss_pred             cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHH
Confidence            99999999994               899999999999889999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          227 NCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       227 ~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      +++++|+|||+|+|+|.+.++.+...+.......+|+.|+.  ..+|++||.+||.++|++|||+.+++++.+
T Consensus       163 ~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~m~~--~~~g~ert~~e~~~ll~~AGF~~v~v~~~~  233 (244)
T d1fp1d2         163 NCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNLMFI--TVGGRERTEKQYEKLSKLSGFSKFQVACRA  233 (244)
T ss_dssp             HHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHHHHH--HHSCCCEEHHHHHHHHHHTTCSEEEEEEEE
T ss_pred             HHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHHHHh--hCCCcCCCHHHHHHHHHHcCCCceEEEecC
Confidence            99999999999999999998765433344456678999986  678999999999999999999999998654

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=3.9e-43  Score=300.06  Aligned_cols=218  Identities=41%  Similarity=0.761  Sum_probs=196.2

Q ss_pred             CChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCC
Q 043063           81 QSYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKG  160 (301)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~  160 (301)
                      .++.+++.+.+++.+++.|.+|.+++|+|+ ++|+.++|.++|+|+.++|+..+.|+++|...+....+.++..++.+++
T Consensus         3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~-~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~   81 (243)
T d1kyza2           3 VSISALNLMNQDKVLMESWYHLKDAVLDGG-IPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEG   81 (243)
T ss_dssp             CCTHHHHHHHTSHHHHGGGGGHHHHHHHCS-CHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSS
T ss_pred             CcHHHHHHHhcCHHHHHHHHHHHHHHhhCC-CHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccC
Confidence            478999998888889999999999999999 8999999999999999999999999999998888778889998874466


Q ss_pred             cceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCChHHHHHHH
Q 043063          161 VKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM  225 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL  225 (301)
                      ..+|||||||+|               +++|+|++++.++..+|++++++|+++++|.+|+|+++++||+|+|++++++|
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL  161 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFL  161 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHH
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHH
Confidence            899999999994               89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEccC
Q 043063          226 ENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLD  300 (301)
Q Consensus       226 ~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~  300 (301)
                      ++++++|+|||+++|+|.+.++.....+.......+|+.||+ ++.+|++||.+||+++|++|||+.+++++.++
T Consensus       162 ~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~-~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~  235 (243)
T d1kyza2         162 KNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLA-HNPGGKERTQKEFEDLAKGAGFQGFKVHCNAF  235 (243)
T ss_dssp             HHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHH-HCSSCCCEEHHHHHHHHHHHCCSCEEEEEEET
T ss_pred             HHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHh-hCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence            999999999999999999988664433333344568999987 45689999999999999999999999998765

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=2.8e-42  Score=294.12  Aligned_cols=215  Identities=32%  Similarity=0.531  Sum_probs=190.0

Q ss_pred             ChhHHHHhhcchhHHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhc-CCCCCC
Q 043063           82 SYAPYVLQHHQDALMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDG-YDGFKG  160 (301)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~-~~~~~~  160 (301)
                      ++.+++.+..+|.++.+|..|.+++++|.+++|+.++|.++|+|+.++|+..+.|+++|...+......+... ++ |++
T Consensus         2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~   80 (244)
T d1fp2a2           2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDG   80 (244)
T ss_dssp             CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTT
T ss_pred             ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccC
Confidence            5778888888999999999999999998778999999999999999999999999999998887666655543 33 788


Q ss_pred             cceEEeecCCce---------------eeeehhHHHhhCCCCCceeEEeCCCCccCCcccEeeHhhhhccCChHHHHHHH
Q 043063          161 VKRLVDVGGSAG---------------INFDLPEVVAEAPSIPGVTHIGGDMFKSIPAADAIFMKWVLTTWTDDECKLIM  225 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~~p~~D~v~~~~vlh~~~d~~~~~iL  225 (301)
                      ..+|||||||+|               +++|+|++++.+...+||++++||||+++|.+|+|+++++||+|+|++|++||
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL  160 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL  160 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence            899999999994               79999999999998999999999999999989999999999999999999999


Q ss_pred             HHHHHhCCCC---CEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEccC
Q 043063          226 ENCYKAIPAG---GKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVLD  300 (301)
Q Consensus       226 ~~~~~aL~pg---g~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~~  300 (301)
                      +++++||+||   |+++|+|.+.++.+...+.......+|++|+   +.+|++||.+||+++|+++||+.++++|+..
T Consensus       161 ~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~dl~m~---~~~G~ert~~e~~~ll~~AGf~~~~i~~~~~  235 (244)
T d1fp2a2         161 KKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMDVNMA---CLNGKERNEEEWKKLFIEAGFQHYKISPLTG  235 (244)
T ss_dssp             HHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHHHHGG---GGTCCCEEHHHHHHHHHHTTCCEEEEEEEET
T ss_pred             HHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHHHHHH---hCCCcCCCHHHHHHHHHHcCCceEEEEECCC
Confidence            9999999998   8999999999877543333334456788776   3589999999999999999999999999764

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=100.00  E-value=6.8e-38  Score=269.54  Aligned_cols=213  Identities=21%  Similarity=0.294  Sum_probs=181.6

Q ss_pred             CChhHHHHhhcchh-HHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCC
Q 043063           81 QSYAPYVLQHHQDA-LMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFK  159 (301)
Q Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~  159 (301)
                      .++++|+.+..... ...+|.+|.+++|+|. ++|+..+|.++|+|+.++|+..+.|+++|...+....+.+++.+| |+
T Consensus         3 ~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~-~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~   80 (256)
T d1qzza2           3 AQQRAWLDLNGAVSHADLAFTGLLDVVRTGR-PAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS   80 (256)
T ss_dssp             TCHHHHHCTTSHHHHHHGGGGGHHHHHHHSC-CSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred             HHHHHHHhhcCchhhhHhhHHHHHHHHHhCC-chhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Cc
Confidence            46788886553222 2347999999999999 789999999999999999999999999999998888899999997 99


Q ss_pred             CcceEEeecCCce---------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccC
Q 043063          160 GVKRLVDVGGSAG---------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTW  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~  216 (301)
                      +.++|||||||+|               +++|+|++++.+++       .+|++++.+|+++++|. +|+|+++++||+|
T Consensus        81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~  160 (256)
T d1qzza2          81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW  160 (256)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred             cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccccc
Confidence            9999999999994               78999998877653       48999999999988876 6999999999999


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~  296 (301)
                      +|+++.++|++++++|+|||+|+|+|.+.+++...  .......+|+.|+.  ..+|++||.+||+++|+++||++++++
T Consensus       161 ~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~--~~~~~~~~d~~ml~--~~~g~~rt~~e~~~ll~~AGf~~~~~~  236 (256)
T d1qzza2         161 SDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--DRFFSTLLDLRMLT--FMGGRVRTRDEVVDLAGSAGLALASER  236 (256)
T ss_dssp             CHHHHHHHHHHHHHHEEEEEEEEEEECCH---------HHHHHHHHHHHHH--HHSCCCCCHHHHHHHHHTTTEEEEEEE
T ss_pred             CcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcc--cHHHHHHHHHHHHh--hCCCccCCHHHHHHHHHHCCCceeEEE
Confidence            99999999999999999999999999887654322  22345567999986  668999999999999999999999998


Q ss_pred             Ecc
Q 043063          297 RVL  299 (301)
Q Consensus       297 ~~~  299 (301)
                      ++.
T Consensus       237 ~~~  239 (256)
T d1qzza2         237 TSG  239 (256)
T ss_dssp             EEC
T ss_pred             EeC
Confidence            764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=100.00  E-value=1.1e-36  Score=261.79  Aligned_cols=198  Identities=22%  Similarity=0.390  Sum_probs=174.2

Q ss_pred             HHhhhhhHHHhhcCCCCChhhhccCCCchhccccCchHHHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce--
Q 043063           95 LMSAWPLVHEAILDPTIEPFVKVHGEPTYSYYGKMPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--  172 (301)
Q Consensus        95 ~~~~~~~l~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g--  172 (301)
                      ...+|.+|++++|+|+ ++|+.++|.++|+|+.++|+..+.|.++|...+....+.+++.+| |++..+|||||||+|  
T Consensus        17 ~~~~~~~L~~~vr~G~-~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~   94 (253)
T d1tw3a2          17 ADISFTRLPDAIRTGR-PTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGF   94 (253)
T ss_dssp             HGGGGGGHHHHHHHCC-CCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHH
T ss_pred             ccccHHHHHHHHHhCC-chhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHH
Confidence            3458999999999998 789999999999999999999999999999988888899999997 999999999999995  


Q ss_pred             -------------eeeehhHHHhhCCC-------CCceeEEeCCCCccCCc-ccEeeHhhhhccCChHHHHHHHHHHHHh
Q 043063          173 -------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKSIPA-ADAIFMKWVLTTWTDDECKLIMENCYKA  231 (301)
Q Consensus       173 -------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~~p~-~D~v~~~~vlh~~~d~~~~~iL~~~~~a  231 (301)
                                   +++|+|++++.+++       .+||+++.+|+++++|. +|+|+++++||+|+|+++.++|++++++
T Consensus        95 ~~~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~  174 (253)
T d1tw3a2          95 AAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEA  174 (253)
T ss_dssp             HHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHh
Confidence                         67899988877653       47999999999988665 6999999999999999999999999999


Q ss_pred             CCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          232 IPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       232 L~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      |+|||+|+|.|.........   ......+|+.|+.  ..+|++||.+||+++|+++||+++++++++
T Consensus       175 LkPGG~l~i~e~~~~~~~~~---~~~~~~~dl~~~~--~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~  237 (253)
T d1tw3a2         175 LEPGGRILIHERDDLHENSF---NEQFTELDLRMLV--FLGGALRTREKWDGLAASAGLVVEEVRQLP  237 (253)
T ss_dssp             EEEEEEEEEEECCBCGGGCC---SHHHHHHHHHHHH--HHSCCCCBHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             cCCCcEEEEEeccCCCCCcc---hhHHHHhhHHHHh--hCCCcCCCHHHHHHHHHHCCCeEEEEEECC
Confidence            99999999999876544221   1234567888886  678999999999999999999999988764

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=1.4e-16  Score=133.10  Aligned_cols=140  Identities=15%  Similarity=0.262  Sum_probs=102.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--cc
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--AD  205 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D  205 (301)
                      ..+++..+ +++..+|||||||+|             +++|+ +.+++.|++      .++++|+.+|+.+. +|.  .|
T Consensus         5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD   83 (231)
T d1vl5a_           5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFH   83 (231)
T ss_dssp             HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEE
T ss_pred             HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhcccccccccccccccccccccccccccc
Confidence            34555554 788899999999996             56798 778777643      47899999998764 554  49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++.+++|+++|.+  ++|++++++|+|||+++|.+...++..  . ..   ...+..............+.++|.++|
T Consensus        84 ~v~~~~~l~~~~d~~--~~l~~~~r~LkpgG~l~i~~~~~~~~~--~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l  155 (231)
T d1vl5a_          84 IVTCRIAAHHFPNPA--SFVSEAYRVLKKGGQLLLVDNSAPEND--A-FD---VFYNYVEKERDYSHHRAWKKSDWLKML  155 (231)
T ss_dssp             EEEEESCGGGCSCHH--HHHHHHHHHEEEEEEEEEEEEEBCSSH--H-HH---HHHHHHHHHHCTTCCCCCBHHHHHHHH
T ss_pred             cccccccccccCCHH--HHHHHHHHhcCCCcEEEEEeCCCCCCH--H-HH---HHHHHHHhhcccCcccCCCHHHHHHHH
Confidence            999999999999864  899999999999999999998776441  1 11   111111110001223456899999999


Q ss_pred             HhCCCCceEEEE
Q 043063          286 FSAGFPHLRLYR  297 (301)
Q Consensus       286 ~~aGf~~~~~~~  297 (301)
                      +++||+++++..
T Consensus       156 ~~aGf~~~~~~~  167 (231)
T d1vl5a_         156 EEAGFELEELHC  167 (231)
T ss_dssp             HHHTCEEEEEEE
T ss_pred             HHCCCEEEEEEE
Confidence            999999887653

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.62  E-value=4.3e-16  Score=129.80  Aligned_cols=136  Identities=16%  Similarity=0.218  Sum_probs=98.8

Q ss_pred             CCCcceEEeecCCce-----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCcccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG-----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPAADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~~D~v~~~~  211 (301)
                      .++..+|||||||+|                 +++|+ +.+++.|++       ..++.+..+|+.+. .+..|++++..
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~  116 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF  116 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEES
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEee
Confidence            456689999999996                 57898 889888764       36788888888654 34569999999


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhh--------------hccccccC
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIY--------------RAKGKHMT  277 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~--------------~~~g~~rt  277 (301)
                      ++|++++++..++|++++++|+|||++++.|...+..+.   ...........+....              ...-...|
T Consensus       117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  193 (225)
T d1im8a_         117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK---INHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDS  193 (225)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHH---HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCC
T ss_pred             eccccChhhHHHHHHHHHHhCCCCceeecccccccccch---hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCC
Confidence            999999888889999999999999999999988765521   1100000000000000              00013468


Q ss_pred             HHHHHHHHHhCCCCceEEE
Q 043063          278 EQEFKQLGFSAGFPHLRLY  296 (301)
Q Consensus       278 ~~e~~~~l~~aGf~~~~~~  296 (301)
                      .+++.++|+++||+.+++.
T Consensus       194 ~~~~~~~L~~aGF~~v~~~  212 (225)
T d1im8a_         194 IETHKVRLKNVGFSQVELW  212 (225)
T ss_dssp             HHHHHHHHHHHTCSEEEEE
T ss_pred             HHHHHHHHHHcCCCceEEe
Confidence            9999999999999998875

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.62  E-value=1.6e-16  Score=137.01  Aligned_cols=140  Identities=14%  Similarity=0.156  Sum_probs=105.0

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-CCc-
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-IPA-  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~p~-  203 (301)
                      ...+....+ +++..+|||||||+|              +++|+ |.+++.+++       .++|+|+.+|+.+. +|. 
T Consensus        56 ~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~  134 (282)
T d2o57a1          56 ASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDN  134 (282)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTT
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccccccc
Confidence            344555554 788899999999995              57897 777777664       37999999999764 554 


Q ss_pred             -ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHH
Q 043063          204 -ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFK  282 (301)
Q Consensus       204 -~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~  282 (301)
                       .|+|++..++|+++|.  .++|++++++|+|||++++.+....+.....   ......+...      .....+.++|.
T Consensus       135 sfD~V~~~~~l~h~~d~--~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~---~~~~~~~~~~------~~~~~s~~~~~  203 (282)
T d2o57a1         135 SYDFIWSQDAFLHSPDK--LKVFQECARVLKPRGVMAITDPMKEDGIDKS---SIQPILDRIK------LHDMGSLGLYR  203 (282)
T ss_dssp             CEEEEEEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEEEECTTCCGG---GGHHHHHHHT------CSSCCCHHHHH
T ss_pred             ccchhhccchhhhccCH--HHHHHHHHHhcCCCcEEEEEEeecCCCCchh---HHHHHHHHhc------cCCCCCHHHHH
Confidence             4999999999999986  4899999999999999999998876543211   1111111111      12335889999


Q ss_pred             HHHHhCCCCceEEEEcc
Q 043063          283 QLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       283 ~~l~~aGf~~~~~~~~~  299 (301)
                      ++++++||..+.+.+.+
T Consensus       204 ~~l~~~Gf~~i~~~d~~  220 (282)
T d2o57a1         204 SLAKECGLVTLRTFSRP  220 (282)
T ss_dssp             HHHHHTTEEEEEEEECH
T ss_pred             HHHHHcCCceEEEEECc
Confidence            99999999999887653

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.62  E-value=4.1e-16  Score=132.43  Aligned_cols=133  Identities=19%  Similarity=0.263  Sum_probs=102.6

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--ccE
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--ADA  206 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~D~  206 (301)
                      ..+++.++ ..+..++||||||+|              +++|. +.+++.|++    ..+++|..+|+.+. ++.  .|+
T Consensus        83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD~  161 (254)
T d1xtpa_          83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYDL  161 (254)
T ss_dssp             HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEEE
T ss_pred             HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccce
Confidence            34555664 567789999999996              36687 778877764    46789999998764 443  499


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHH
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGF  286 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~  286 (301)
                      |++.+++|+++|++..++|++++++|+|||+++|.|.+......         ..|.      ..+...||.++|+++|+
T Consensus       162 I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~---------~~d~------~d~~~~rs~~~~~~l~~  226 (254)
T d1xtpa_         162 IVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRF---------LVDK------EDSSLTRSDIHYKRLFN  226 (254)
T ss_dssp             EEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCE---------EEET------TTTEEEBCHHHHHHHHH
T ss_pred             EEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcc---------eecc------cCCceeCCHHHHHHHHH
Confidence            99999999999999999999999999999999999987654311         1121      12345679999999999


Q ss_pred             hCCCCceEEEE
Q 043063          287 SAGFPHLRLYR  297 (301)
Q Consensus       287 ~aGf~~~~~~~  297 (301)
                      ++||++++...
T Consensus       227 ~aGf~ii~~~~  237 (254)
T d1xtpa_         227 ESGVRVVKEAF  237 (254)
T ss_dssp             HHTCCEEEEEE
T ss_pred             HcCCEEEEEEe
Confidence            99999988654

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.60  E-value=8.8e-16  Score=128.65  Aligned_cols=138  Identities=15%  Similarity=0.258  Sum_probs=102.7

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEe
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAI  207 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v  207 (301)
                      +++..+ +++..+|||||||+|             +++|+ +.+++.|++      .+++.++.+|+.+. +|.  .|+|
T Consensus         8 l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v   86 (234)
T d1xxla_           8 MIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDII   86 (234)
T ss_dssp             HHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEE
T ss_pred             HHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccccccccccccccccccccccccccee
Confidence            455665 889999999999996             67898 778877754      36899999998764 565  3999


Q ss_pred             eHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHh
Q 043063          208 FMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFS  287 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~  287 (301)
                      ++.+++|+++|.  .++|+++++.|+|||++++.+...++.+   ....+...+.....   ....+..+..+|..++++
T Consensus        87 ~~~~~l~~~~d~--~~~l~~~~r~LkpgG~~~~~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  158 (234)
T d1xxla_          87 TCRYAAHHFSDV--RKAVREVARVLKQDGRFLLVDHYAPEDP---VLDEFVNHLNRLRD---PSHVRESSLSEWQAMFSA  158 (234)
T ss_dssp             EEESCGGGCSCH--HHHHHHHHHHEEEEEEEEEEEECBCSSH---HHHHHHHHHHHHHC---TTCCCCCBHHHHHHHHHH
T ss_pred             eeeceeecccCH--HHHHHHHHHeeCCCcEEEEEEcCCCCCH---HHHHHHHHHHhhCC---CcccccCCHHHHHHHHHH
Confidence            999999999885  5999999999999999999988766431   11111111111111   123556789999999999


Q ss_pred             CCCCceEEEE
Q 043063          288 AGFPHLRLYR  297 (301)
Q Consensus       288 aGf~~~~~~~  297 (301)
                      +||.+.++..
T Consensus       159 ~gf~~~~~~~  168 (234)
T d1xxla_         159 NQLAYQDIQK  168 (234)
T ss_dssp             TTEEEEEEEE
T ss_pred             CCCceeEEEE
Confidence            9998776543

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.2e-16  Score=127.86  Aligned_cols=124  Identities=16%  Similarity=0.208  Sum_probs=99.4

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc-CCc--ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS-IPA--ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~-~p~--~D~v~~~~vl  213 (301)
                      ..+..+|||||||+|              +++|+ +.+++.|++      ..+++|+.+|+.+. ++.  .|+|++..++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l  137 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVI  137 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCG
T ss_pred             CCCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhcccccccccccccccccccccccccccccccccccccccc
Confidence            456689999999996              57898 888887764      25789999998764 433  4999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCce
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHL  293 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~  293 (301)
                      |++++++..++|+++++.|+|||++++.+....+...          ++      .......|+.++|+++|+++||+++
T Consensus       138 ~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----------~~------~~~~~~~~~~~~~~~l~~~aGf~ii  201 (222)
T d2ex4a1         138 GHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----------LD------DVDSSVCRDLDVVRRIICSAGLSLL  201 (222)
T ss_dssp             GGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----------EE------TTTTEEEEBHHHHHHHHHHTTCCEE
T ss_pred             ccchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----------cc------cCCceeeCCHHHHHHHHHHcCCEEE
Confidence            9999998889999999999999999999987664310          11      0123455799999999999999998


Q ss_pred             EEEE
Q 043063          294 RLYR  297 (301)
Q Consensus       294 ~~~~  297 (301)
                      +...
T Consensus       202 ~~~~  205 (222)
T d2ex4a1         202 AEER  205 (222)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8765

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=1.4e-15  Score=124.93  Aligned_cols=130  Identities=18%  Similarity=0.205  Sum_probs=94.9

Q ss_pred             CcceEEeecCCce---------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHH
Q 043063          160 GVKRLVDVGGSAG---------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIME  226 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~  226 (301)
                      +..+|||||||+|         +++|. |.+++.+++ .+++++.+|+.+. ++.  .|+|++.++||+++|.  .++|+
T Consensus        36 ~~~~vLDiGcG~G~~~~~~~~~~giD~s~~~~~~a~~-~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~--~~~l~  112 (208)
T d1vlma_          36 PEGRGVEIGVGTGRFAVPLKIKIGVEPSERMAEIARK-RGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--ERALK  112 (208)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCCEEEESCHHHHHHHHH-TTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--HHHHH
T ss_pred             CCCeEEEECCCCcccccccceEEEEeCChhhcccccc-ccccccccccccccccccccccccccccccccccc--ccchh
Confidence            3458999999997         67898 888887764 3699999998764 553  4999999999999885  48999


Q ss_pred             HHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          227 NCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       227 ~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      +++++|+|||++++.++..+.-    ..............   ..+...+|.++|.++|+++||+.+++....
T Consensus       113 ~~~~~L~pgG~l~i~~~~~~~~----~~~~~~~~~~~~~~---~~~~~~~s~~~l~~~l~~~Gf~~i~v~~~~  178 (208)
T d1vlma_         113 EAYRILKKGGYLIVGIVDRESF----LGREYEKNKEKSVF---YKNARFFSTEELMDLMRKAGFEEFKVVQTL  178 (208)
T ss_dssp             HHHHHEEEEEEEEEEEECSSSH----HHHHHHHTTTC-CC---STTCCCCCHHHHHHHHHHTTCEEEEEEEEC
T ss_pred             hhhhcCCCCceEEEEecCCcch----hHHhhhhccccccc---cccccCCCHHHHHHHHHHcCCeEEEEEEEe
Confidence            9999999999999988743211    00001111111111   123445799999999999999999887643

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=4.2e-15  Score=125.32  Aligned_cols=137  Identities=14%  Similarity=0.095  Sum_probs=102.5

Q ss_pred             HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--cc
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--AD  205 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D  205 (301)
                      .+.+.+. +.+..+|||||||+|              +++|+ |.+++.+++       .+||+|+.+|+.+..+.  .|
T Consensus        24 ~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD  102 (245)
T d1nkva_          24 TLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCD  102 (245)
T ss_dssp             HHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEE
T ss_pred             HHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCcee
Confidence            3555564 778899999999995              67898 777776654       37899999999876554  49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHH
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLG  285 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l  285 (301)
                      +|++..++|+++|.  .++|+++++.|+|||++++.+......+...   ........      .......+..+|..++
T Consensus       103 ~v~~~~~~~~~~d~--~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~  171 (245)
T d1nkva_         103 VAACVGATWIAGGF--AGAEELLAQSLKPGGIMLIGEPYWRQLPATE---EIAQACGV------SSTSDFLTLPGLVGAF  171 (245)
T ss_dssp             EEEEESCGGGTSSS--HHHHHHHTTSEEEEEEEEEEEEEETTCCSSH---HHHHTTTC------SCGGGSCCHHHHHHHH
T ss_pred             EEEEEehhhccCCH--HHHHHHHHHHcCcCcEEEEEeccccCCCChH---HHHHHhcc------CCCcccCCHHHHHHHH
Confidence            99999999999986  4899999999999999999998766543211   11111110      1123356899999999


Q ss_pred             HhCCCCceEEEEc
Q 043063          286 FSAGFPHLRLYRV  298 (301)
Q Consensus       286 ~~aGf~~~~~~~~  298 (301)
                      +++||.++.....
T Consensus       172 ~~aG~~~v~~~~~  184 (245)
T d1nkva_         172 DDLGYDVVEMVLA  184 (245)
T ss_dssp             HTTTBCCCEEEEC
T ss_pred             HHcCCEEEEEEeC
Confidence            9999998876543

>d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.53  E-value=6.7e-16  Score=108.16  Aligned_cols=69  Identities=19%  Similarity=0.245  Sum_probs=64.1

Q ss_pred             CCccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCC
Q 043063            2 EDNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA   78 (301)
Q Consensus         2 ~~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~   78 (301)
                      -+++|+++|||+.|.+||+|++|||+++|+    ++..+.|+||+|+++|+|+++    +++.|++|+.|+.|.+++
T Consensus        17 aL~~av~L~ifd~l~~gp~s~~eLA~~~g~----~~~~l~rlLr~l~a~gl~~e~----~~~~y~lt~~s~~L~~Dh   85 (85)
T d1tw3a1          17 VVRTAATLRLVDHILAGARTVKALAARTDT----RPEALLRLIRHLVAIGLLEED----APGEFVPTEVGELLADDH   85 (85)
T ss_dssp             HHHHHHHTTHHHHHHTTCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE----ETTEEEECTTGGGGSTTS
T ss_pred             HHHHHHHcCcHHHhccCCCCHHHHHHHhCc----ChhHHHHHHHHHHHCCCeEec----CCCeEecCHHHHHhhcCC
Confidence            357899999999999999999999999999    899999999999999999998    478999999999988763

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.45  E-value=2.1e-13  Score=116.92  Aligned_cols=148  Identities=16%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc-c
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA-A  204 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~-~  204 (301)
                      ...+++.++ +++..+|||||||.|              +++|+ ++.++.+++       ..++.+...|+.+ ++. .
T Consensus        41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~f  118 (280)
T d2fk8a1          41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEPV  118 (280)
T ss_dssp             HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccch
Confidence            356777785 888999999999995              56777 555544432       4678888877643 444 5


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCC-----ChHHhhhhhhccHHHHhhhhccccccCHH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSN-----ESQRTRALLEGDIFVMTIYRAKGKHMTEQ  279 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~-----~~~~~~~~~~~d~~m~~~~~~~g~~rt~~  279 (301)
                      |.|++..++++++++.-..++++++++|+|||+++|.+.+..+...     ...........|...-- ..++|..++.+
T Consensus       119 D~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~ky-ifPgg~lPS~~  197 (280)
T d2fk8a1         119 DRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTE-IFPGGRLPSTE  197 (280)
T ss_dssp             SEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHH-TSTTCCCCCHH
T ss_pred             hhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEEEEEeeccCcchhhhcccccccccccccchhhhh-ccCCCcccchH
Confidence            9999999999999987789999999999999999998866543210     00001111122332221 24677889999


Q ss_pred             HHHHHHHhCCCCceEEEEc
Q 043063          280 EFKQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       280 e~~~~l~~aGf~~~~~~~~  298 (301)
                      ++.+.++++||.+.++..+
T Consensus       198 ~l~~~~e~aGf~v~~~~~~  216 (280)
T d2fk8a1         198 MMVEHGEKAGFTVPEPLSL  216 (280)
T ss_dssp             HHHHHHHHTTCBCCCCEEC
T ss_pred             hhhhhHHhhccccceeeec
Confidence            9999999999999987764

>d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.39  E-value=4.2e-14  Score=100.00  Aligned_cols=68  Identities=19%  Similarity=0.157  Sum_probs=60.7

Q ss_pred             CccccccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063            3 DNECRDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus         3 ~~~a~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      +++|+|+|||+.|.+||+|++|||+++|+    +++.+.|+||+|+++|+|+++++  +.+.|++|+.++.|.+
T Consensus        24 L~~aveL~ifd~L~~gp~t~~eLA~~~g~----~~~~l~rLlr~L~a~gll~~~~d--~~~~~~~t~~g~lL~d   91 (92)
T d1qzza1          24 LRVAATLRLVDHLLAGADTLAGLADRTDT----HPQALSRLVRHLTVVGVLEGGEK--QGRPLRPTRLGMLLAD   91 (92)
T ss_dssp             HHHHHHTTHHHHHHTTCCSHHHHHHHHTC----CHHHHHHHHHHHHHTTSEECCCC---CCCCEECTTGGGGST
T ss_pred             HHHHHHcCchHHHhCCCCCHHHHHHHHCc----CchHHHHHHHHHHHCCCeeeecC--CCceecccHHHHhccC
Confidence            57899999999999999999999999999    89999999999999999998841  1346889999988865

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.39  E-value=2.1e-13  Score=117.14  Aligned_cols=136  Identities=19%  Similarity=0.222  Sum_probs=91.2

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~~vl  213 (301)
                      ++.+.+|||||||+|                +++|. +.+++.|++     ..+++|+.+|+.+. +++ .|+|++.+++
T Consensus        25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD~v~~~~~l  104 (281)
T d2gh1a1          25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICHAFL  104 (281)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEEEEEEESCG
T ss_pred             cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCceEEEEehhh
Confidence            567789999999995                46797 778877754     24799999998764 454 5999999999


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEeccccC--------CCCCChHHhhhhhhccHHHHhhhhccccccC-HHHHHHH
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVLP--------DDSNESQRTRALLEGDIFVMTIYRAKGKHMT-EQEFKQL  284 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~--------~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt-~~e~~~~  284 (301)
                      |+++|.+  ++|++++++|+|||++++.|+...        +............+....... ....|.... ..++..+
T Consensus       105 ~~~~d~~--~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~l~~~  181 (281)
T d2gh1a1         105 LHMTTPE--TMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESD-TQRNGKDGNIGMKIPIY  181 (281)
T ss_dssp             GGCSSHH--HHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHH-HHTTCCCTTGGGTHHHH
T ss_pred             hcCCCHH--HHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHH-HHHcCCCCCHHHHHHHH
Confidence            9999874  899999999999999999986321        110000000001111111110 011232222 2467889


Q ss_pred             HHhCCCCceEEE
Q 043063          285 GFSAGFPHLRLY  296 (301)
Q Consensus       285 l~~aGf~~~~~~  296 (301)
                      ++++||+.+++.
T Consensus       182 l~eaGf~~i~~~  193 (281)
T d2gh1a1         182 LSELGVKNIECR  193 (281)
T ss_dssp             HHHTTCEEEEEE
T ss_pred             HHHcCCeEEEEE
Confidence            999999998765

>d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.38  E-value=2e-14  Score=103.46  Aligned_cols=73  Identities=21%  Similarity=0.307  Sum_probs=61.0

Q ss_pred             CccccccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhcCC
Q 043063            3 DNECRDGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVTDA   78 (301)
Q Consensus         3 ~~~a~~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~~~   78 (301)
                      +++|++|||||.|.  +||+|++|||++++++ |.+++.+.|+||+|+++|+|.+..+  ++++|++|+.|++|+++.
T Consensus        26 L~~aveLgi~d~l~~~~~p~t~~eLa~~~~~~-~~~~~~L~RlLR~L~~~gi~~~~~~--~~~~Y~lt~~s~~Lv~~~  100 (101)
T d1fp2a1          26 LKWAVEMNIPNIIQNHGKPISLSNLVSILQVP-SSKIGNVRRLMRYLAHNGFFEIITK--EEESYALTVASELLVRGS  100 (101)
T ss_dssp             HHHHHHTTHHHHHHHHTSCEEHHHHHHHHTCC-GGGHHHHHHHHHHHHHTTSEEEEES--SSEEEEECHHHHTTSTTS
T ss_pred             HHHHHHcCcHHHHHHcCCCCCHHHHHHHcCCC-CccchHHHHHHHHHHhCCceeeecC--CCCeEecCHHHHHhhcCC
Confidence            67999999999995  4899999999999982 2134679999999999999986532  357899999999988764

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=2.4e-12  Score=110.30  Aligned_cols=149  Identities=11%  Similarity=0.094  Sum_probs=105.2

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhC-------CCCCceeEEeCCCCccCCc-c
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEA-------PSIPGVTHIGGDMFKSIPA-A  204 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a-------~~~~ri~~~~gd~~~~~p~-~  204 (301)
                      .+.+++.+. .++..+|||||||.|              +++++ +.-++.+       ...+++++..+|+.. +|. .
T Consensus        51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~f  128 (285)
T d1kpga_          51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEPV  128 (285)
T ss_dssp             HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCCC
T ss_pred             HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-ccccc
Confidence            356777775 888999999999995              56666 3333322       225899999999753 354 5


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCC-----CChHHhhhhhhccHHHHhhhhccccccCHH
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDS-----NESQRTRALLEGDIFVMTIYRAKGKHMTEQ  279 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~-----~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~  279 (301)
                      |.|+...++.++..+.-..++++++++|+|||++++.+.+.....     ............+...-- ..++|..++.+
T Consensus       129 D~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~ky-iFpgg~lPsl~  207 (285)
T d1kpga_         129 DRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFPGGRLPSIP  207 (285)
T ss_dssp             SEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TSTTCCCCCHH
T ss_pred             cceeeehhhhhcCchhHHHHHHHHHhhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHH-hccCCCCCChh
Confidence            999999999999876667899999999999999999887654221     000011111122222111 24578888999


Q ss_pred             HHHHHHHhCCCCceEEEEcc
Q 043063          280 EFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       280 e~~~~l~~aGf~~~~~~~~~  299 (301)
                      ++.++++++||++.++..+.
T Consensus       208 ~~~~~~e~agf~v~~~~~~~  227 (285)
T d1kpga_         208 MVQECASANGFTVTRVQSLQ  227 (285)
T ss_dssp             HHHHHHHTTTCEEEEEEECH
T ss_pred             hHHHHHHHhchhhcccccch
Confidence            99999999999999988764

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.32  E-value=1.7e-12  Score=107.58  Aligned_cols=130  Identities=15%  Similarity=0.178  Sum_probs=91.2

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc-CCc-ccEeeHhhhhccCChHH
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS-IPA-ADAIFMKWVLTTWTDDE  220 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~-~p~-~D~v~~~~vlh~~~d~~  220 (301)
                      ....+|||||||+|             +++|+ |.+++.+++  .++++++.+|+.+. .++ .|+|++.++||+++|. 
T Consensus        19 ~~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~d~-   97 (225)
T d2p7ia1          19 FRPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDDP-   97 (225)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSSH-
T ss_pred             CCCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecCCH-
Confidence            34678999999996             67898 778888764  46799999998654 444 5999999999999986 


Q ss_pred             HHHHHHHHH-HhCCCCCEEEEeccccCCCCCChHHhhhhhh---------ccHHHHhhhhccccccCHHHHHHHHHhCCC
Q 043063          221 CKLIMENCY-KAIPAGGKLIACEPVLPDDSNESQRTRALLE---------GDIFVMTIYRAKGKHMTEQEFKQLGFSAGF  290 (301)
Q Consensus       221 ~~~iL~~~~-~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~---------~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf  290 (301)
                       ..+|++++ +.|+|||++++.-+-..   .  ........         +.-.-..  ...-..+|.++++++++++||
T Consensus        98 -~~~l~~i~~~~Lk~gG~l~i~~pn~~---~--~~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~~~~~~l~~~l~~~Gf  169 (225)
T d2p7ia1          98 -VALLKRINDDWLAEGGRLFLVCPNAN---A--VSRQIAVKMGIISHNSAVTEAEFA--HGHRCTYALDTLERDASRAGL  169 (225)
T ss_dssp             -HHHHHHHHHTTEEEEEEEEEEEECTT---C--HHHHHHHHTTSSSSTTCCCHHHHH--TTCCCCCCHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHhcCCCceEEEEeCCcc---c--HHHHHHHHhhhhhhhhhcCccccc--eeeeeccCHHHHHHHHHHCCC
Confidence             48899998 68999999998754211   0  00000000         0000000  112345689999999999999


Q ss_pred             CceEEEE
Q 043063          291 PHLRLYR  297 (301)
Q Consensus       291 ~~~~~~~  297 (301)
                      ++++...
T Consensus       170 ~i~~~~~  176 (225)
T d2p7ia1         170 QVTYRSG  176 (225)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9888654

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=7.4e-12  Score=107.47  Aligned_cols=149  Identities=17%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCC-------CCCceeEEeCCCCccCCccc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAP-------SIPGVTHIGGDMFKSIPAAD  205 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~-------~~~ri~~~~gd~~~~~p~~D  205 (301)
                      ...+++.+. +++..+|||||||.|              +++++ ++-++.++       ..+++++...|+...-...|
T Consensus        50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~fD  128 (291)
T d1kpia_          50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPVD  128 (291)
T ss_dssp             HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCCS
T ss_pred             HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccccccccc
Confidence            355677775 889999999999985              56776 33333322       24789999988743222369


Q ss_pred             EeeHhhhhccCChH-------HHHHHHHHHHHhCCCCCEEEEeccccCCCCCC------hHHhhhhhhccHHHHhhhhcc
Q 043063          206 AIFMKWVLTTWTDD-------ECKLIMENCYKAIPAGGKLIACEPVLPDDSNE------SQRTRALLEGDIFVMTIYRAK  272 (301)
Q Consensus       206 ~v~~~~vlh~~~d~-------~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~------~~~~~~~~~~d~~m~~~~~~~  272 (301)
                      .|+...++.|+++.       .-..+++++++.|+|||++++...+.++....      .|. ......+...-- ..++
T Consensus       129 ~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~-~~~~~~~fi~ky-iFpg  206 (291)
T d1kpia_         129 RIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPM-SLLRFIKFILTE-IFPG  206 (291)
T ss_dssp             EEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCH-HHHHHHHHHHHH-TCTT
T ss_pred             eEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCch-hhcccchHHHHH-hcCC
Confidence            99999999888873       34689999999999999999999887643110      000 011112222211 2457


Q ss_pred             ccccCHHHHHHHHHhCCCCceEEEEcc
Q 043063          273 GKHMTEQEFKQLGFSAGFPHLRLYRVL  299 (301)
Q Consensus       273 g~~rt~~e~~~~l~~aGf~~~~~~~~~  299 (301)
                      |...+.+++...++++||++..+..+.
T Consensus       207 g~lps~~~~~~~~e~~gl~v~~~~~~~  233 (291)
T d1kpia_         207 GRLPRISQVDYYSSNAGWKVERYHRIG  233 (291)
T ss_dssp             CCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred             CCCCCHHHHHhhhcccccccceeeecc
Confidence            888999999999999999999988764

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=1.1e-12  Score=108.21  Aligned_cols=87  Identities=17%  Similarity=0.265  Sum_probs=72.6

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      .....+|||||||+|             +++|. +.+++.|++     ..++.++.+|+.+. ++.  .|+|++..++|+
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~~  114 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVH  114 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred             cCCCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccccccccccccccccccccCcCceEEEEecchhh
Confidence            345679999999996             67898 788877754     35788999998764 554  499999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      +++++..++|++++++|+|||++++....
T Consensus       115 ~~~~d~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         115 FEPLELNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             CChhHHHHHHHHHHHHcCcCcEEEEEEcC
Confidence            99888889999999999999999887654

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.20  E-value=5.4e-12  Score=102.39  Aligned_cols=88  Identities=16%  Similarity=0.157  Sum_probs=72.9

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC-c-ccEeeHhhhhcc
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP-A-ADAIFMKWVLTT  215 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p-~-~D~v~~~~vlh~  215 (301)
                      +....+|||||||+|             +++|+ +.+++.+++      .+++++..+|+.+..+ . .|+|++..++|+
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~  107 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMF  107 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGG
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeec
Confidence            445579999999996             57898 677776543      3689999999887533 3 499999999999


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +++++..++|++++++|+|||++++.....
T Consensus       108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~  137 (198)
T d2i6ga1         108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMD  137 (198)
T ss_dssp             SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC
T ss_pred             CCHHHHHHHHHHHHHHcCCCcEEEEEEecC
Confidence            999888999999999999999999887654

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.16  E-value=1.9e-11  Score=101.45  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=90.0

Q ss_pred             hcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhC----CCCCceeEEeCCCCcc--CCc--ccEee
Q 043063          153 DGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEA----PSIPGVTHIGGDMFKS--IPA--ADAIF  208 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a----~~~~ri~~~~gd~~~~--~p~--~D~v~  208 (301)
                      +.++ +++..+|||||||+|               +.+|. |.+++.+    .+.+++.++.+|...+  .+.  .|+++
T Consensus        68 ~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~  146 (230)
T d1g8sa_          68 KVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV  146 (230)
T ss_dssp             CCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred             HhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence            3454 778899999999996               45687 7666554    4468888999888765  222  37777


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhC
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSA  288 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~a  288 (301)
                      +.+.+|++++.  ..+++++++.|+|||+++|.+.....+....|.                     ...+++.+.|+++
T Consensus       147 i~~~~~~~~~~--~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~---------------------~~~~e~~~~L~~a  203 (230)
T d1g8sa_         147 IYEDVAQPNQA--EILIKNAKWFLKKGGYGMIAIKARSIDVTKDPK---------------------EIFKEQKEILEAG  203 (230)
T ss_dssp             EEECCCSTTHH--HHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHH---------------------HHHHHHHHHHHHH
T ss_pred             eeccccchHHH--HHHHHHHHHhcccCceEEEEeeccccCCCCCHH---------------------HHHHHHHHHHHHc
Confidence            77778776654  588999999999999999988765544211111                     1346788999999


Q ss_pred             CCCceEEEEcc
Q 043063          289 GFPHLRLYRVL  299 (301)
Q Consensus       289 Gf~~~~~~~~~  299 (301)
                      ||++++..++.
T Consensus       204 GF~ive~idL~  214 (230)
T d1g8sa_         204 GFKIVDEVDIE  214 (230)
T ss_dssp             TEEEEEEEECT
T ss_pred             CCEEEEEecCC
Confidence            99999988763

>d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.15  E-value=3.2e-12  Score=91.99  Aligned_cols=77  Identities=22%  Similarity=0.276  Sum_probs=61.7

Q ss_pred             CCCccccccccccccCC----CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC----CeEecChhch
Q 043063            1 MEDNECRDGGKKGRLAN----TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE----RKYSLTEIGK   72 (301)
Q Consensus         1 ~~~~~a~~lglf~~L~~----g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~----~~y~~t~~s~   72 (301)
                      |-+++|++|||||.|+.    +++|..||+.++..++|..+..+.|+||.|++.|+|.+.....++    ..|.+||.|+
T Consensus        22 maLk~AieLgI~DiI~~~G~~~~ls~~eia~~l~~~~p~~~~~L~RilR~Las~~vf~~~~~~~~dg~~~~~Y~LTpvsk  101 (107)
T d1kyza1          22 MILKSALELDLLEIIAKAGPGAQISPIEIASQLPTTNPDAPVMLDRMLRLLACYIILTCSVRTQQDGKVQRLYGLATVAK  101 (107)
T ss_dssp             HHHHHHHHTTHHHHHHTTCTTCCBCHHHHHHTSSCCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHH
T ss_pred             HHHHHHHHcCCHHHHHHcCCCCCCCHHHHHHhcCCCCCcchHHHHHHHHHHHhcCceEEeeecCCCCCeeeEEecchhHH
Confidence            45789999999999974    367999999999986553356899999999999999865322112    2699999999


Q ss_pred             hhhcC
Q 043063           73 SLVTD   77 (301)
Q Consensus        73 ~l~~~   77 (301)
                      +|+++
T Consensus       102 ~Lv~d  106 (107)
T d1kyza1         102 YLVKN  106 (107)
T ss_dssp             HHSCC
T ss_pred             hhcCC
Confidence            99875

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=1.9e-11  Score=102.43  Aligned_cols=93  Identities=19%  Similarity=0.344  Sum_probs=73.8

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEe
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAI  207 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v  207 (301)
                      ..+++.+. ..+..+|||||||+|             +++|+ |.+++.|++     ..++++..+|+.+- ++. .|+|
T Consensus        31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD~I  109 (251)
T d1wzna1          31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAV  109 (251)
T ss_dssp             HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEEE
T ss_pred             HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccccccchheehhhhhcccccccchH
Confidence            34445553 566789999999996             67898 789988765     34899999998764 554 5988


Q ss_pred             eHh-hhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          208 FMK-WVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       208 ~~~-~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ++. .++|+++.++..++|+++++.|+|||++++..
T Consensus       110 ~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii~~  145 (251)
T d1wzna1         110 TMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF  145 (251)
T ss_dssp             EECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            875 67888887888899999999999999998743

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=3.2e-11  Score=100.04  Aligned_cols=117  Identities=9%  Similarity=-0.017  Sum_probs=87.5

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----------------------CCceeEEeCCCCcc
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----------------------IPGVTHIGGDMFKS  200 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----------------------~~ri~~~~gd~~~~  200 (301)
                      .....+|||+|||+|             +++|. |..++.+++                       ..++++..+|++..
T Consensus        43 ~~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          43 GKSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             TCCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            456789999999995             68898 777765421                       25899999999875


Q ss_pred             C--Cc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhcccccc
Q 043063          201 I--PA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHM  276 (301)
Q Consensus       201 ~--p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~r  276 (301)
                      .  +.  .|+|+...++|++++++..+.+++++++|+|||++++.....+.....+|.                   ...
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~gpp-------------------~~~  183 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHPGPP-------------------FYV  183 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCCCSS-------------------CCC
T ss_pred             cccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCCCCC-------------------CCC
Confidence            2  22  499999999999999889999999999999999988877665433211111                   123


Q ss_pred             CHHHHHHHHHhCCCCceE
Q 043063          277 TEQEFKQLGFSAGFPHLR  294 (301)
Q Consensus       277 t~~e~~~~l~~aGf~~~~  294 (301)
                      +.+|++++|+. +|.+..
T Consensus       184 ~~~el~~lf~~-~~~i~~  200 (229)
T d2bzga1         184 PHAEIERLFGK-ICNIRC  200 (229)
T ss_dssp             CHHHHHHHHTT-TEEEEE
T ss_pred             CHHHHHHHhcC-CCEEEE
Confidence            78889999865 565543

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.11  E-value=2.8e-11  Score=97.38  Aligned_cols=90  Identities=12%  Similarity=0.110  Sum_probs=73.7

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC------------------CCceeEEeCCCCccCC--c
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------------------IPGVTHIGGDMFKSIP--A  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------------------~~ri~~~~gd~~~~~p--~  203 (301)
                      .++..+|||||||+|             +++|+ +.+++.|++                  ...++|..+|+++..+  .
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            667889999999996             68898 788877753                  1456888999887532  2


Q ss_pred             --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                        .|+|+.+.++|+++++.....+++++++|+|||++++.......
T Consensus        98 ~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~  143 (201)
T d1pjza_          98 GHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQ  143 (201)
T ss_dssp             HSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCS
T ss_pred             cceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEccccc
Confidence              39999999999999988899999999999999998887665543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.1e-10  Score=99.54  Aligned_cols=137  Identities=14%  Similarity=0.083  Sum_probs=84.0

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------------eeeeh-hHHHhhCCC-------CCceeE--EeCCC
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS-------IPGVTH--IGGDM  197 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~-------~~ri~~--~~gd~  197 (301)
                      +.++..+...++..+|||||||+|                     +++|. +.+++.+++       ...+.+  ...++
T Consensus        29 ~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~  108 (280)
T d1jqea_          29 PGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETS  108 (280)
T ss_dssp             HHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCH
T ss_pred             HHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhh
Confidence            444444422444568999999996                     35576 566665542       133433  33333


Q ss_pred             C-------ccCCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhh-hhhccHHHHh
Q 043063          198 F-------KSIPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRA-LLEGDIFVMT  267 (301)
Q Consensus       198 ~-------~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~-~~~~d~~m~~  267 (301)
                      .       ...+.  .|+|++.++||+++|.  .++|+++++.|+|||.++|...-.+    .. .... .....  ...
T Consensus       109 ~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~LkpgG~l~i~~~~~~----~~-~~~l~~~~~~--~~~  179 (280)
T d1jqea_         109 SEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGTNAKMLIIVVSGS----SG-WDKLWKKYGS--RFP  179 (280)
T ss_dssp             HHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEEEEEEEEEEECTT----SH-HHHHHHHHGG--GSC
T ss_pred             hhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCCCCEEEEEEecCc----ch-HHHHHHHHHH--hcC
Confidence            1       11222  4999999999999886  4899999999999999988765211    11 1111 00000  000


Q ss_pred             hhhccccccCHHHHHHHHHhCCCCceEE
Q 043063          268 IYRAKGKHMTEQEFKQLGFSAGFPHLRL  295 (301)
Q Consensus       268 ~~~~~g~~rt~~e~~~~l~~aGf~~~~~  295 (301)
                       .......++.++|.++|++.||+....
T Consensus       180 -~~~~~~~~~~~~~~~~L~~~G~~~~~~  206 (280)
T d1jqea_         180 -QDDLCQYITSDDLTQMLDNLGLKYECY  206 (280)
T ss_dssp             -CCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred             -CCcccccCCHHHHHHHHHHCCCceEEE
Confidence             012244578999999999999986543

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.9e-11  Score=102.91  Aligned_cols=80  Identities=18%  Similarity=0.184  Sum_probs=59.0

Q ss_pred             ccEeeHhhhhccCCh--HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHH
Q 043063          204 ADAIFMKWVLTTWTD--DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~  281 (301)
                      .|+|++..+||+++.  ++...+++++++.|+|||++++.+........         ..+      ........|.++|
T Consensus       153 fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~---------~~~------~~~~~~~~~~~~~  217 (257)
T d2a14a1         153 ADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYM---------VGK------REFSCVALEKGEV  217 (257)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEE---------ETT------EEEECCCCCHHHH
T ss_pred             ccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEecccccce---------ecc------ccccccCCCHHHH
Confidence            499999999998753  45679999999999999999998875432100         000      0112234589999


Q ss_pred             HHHHHhCCCCceEEEEc
Q 043063          282 KQLGFSAGFPHLRLYRV  298 (301)
Q Consensus       282 ~~~l~~aGf~~~~~~~~  298 (301)
                      +++|+++||+++++...
T Consensus       218 ~~~l~~aGf~v~~~~~~  234 (257)
T d2a14a1         218 EQAVLDAGFDIEQLLHS  234 (257)
T ss_dssp             HHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHCCCEEEEEEEe
Confidence            99999999998887543

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.07  E-value=6.3e-11  Score=99.63  Aligned_cols=89  Identities=18%  Similarity=0.245  Sum_probs=70.6

Q ss_pred             hhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-C-Cc--c
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I-PA--A  204 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~-p~--~  204 (301)
                      +++.+  .++..+|||||||+|              +++|+ +.+++.|++       ..++.|..+|++.. + +.  .
T Consensus        17 lI~~~--~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~f   94 (252)
T d1ri5a_          17 LIRLY--TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEF   94 (252)
T ss_dssp             HHHHH--CCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCE
T ss_pred             HHHHh--CCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccc
Confidence            44544  456689999999995              57898 788877653       35899999999765 3 23  5


Q ss_pred             cEeeHhhhhccC--ChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          205 DAIFMKWVLTTW--TDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       205 D~v~~~~vlh~~--~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      |+|++..++|++  +.++..++|+++++.|+|||++++.
T Consensus        95 D~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          95 DVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             EEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             eEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEE
Confidence            999999999986  3466789999999999999998875

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=5.4e-11  Score=99.08  Aligned_cols=83  Identities=20%  Similarity=0.268  Sum_probs=65.6

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCCCCceeEEeCCCCcc-CCc--ccEeeH-hhhhccCChH
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSIPGVTHIGGDMFKS-IPA--ADAIFM-KWVLTTWTDD  219 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~~ri~~~~gd~~~~-~p~--~D~v~~-~~vlh~~~d~  219 (301)
                      .++..+|||||||+|             +++|. +.+++.|++.....++.+|+.+- ++.  .|+|++ ..++|+++|.
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d~  119 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVENK  119 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSCH
T ss_pred             cCCCCEEEEECCCCchhcccccccceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhhH
Confidence            345679999999996             67898 88888887644445677887653 554  499886 5799999987


Q ss_pred             HHHHHHHHHHHhCCCCCEEEEec
Q 043063          220 ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       220 ~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      +  ++|+++++.|+|||.+++..
T Consensus       120 ~--~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1         120 D--KAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             H--HHHHHHHHHEEEEEEEEEEE
T ss_pred             H--HHHHHHHhhcCcCcEEEEEE
Confidence            5  79999999999999988864

>d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Plant O-methyltransferase, N-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.99  E-value=3.6e-11  Score=86.65  Aligned_cols=78  Identities=32%  Similarity=0.419  Sum_probs=59.7

Q ss_pred             CCCccccccccccccCC-C-C---CCHHHHHHHhCCC--CCCCcccHHHHHHHHhcCcceeccccccCC----CeEecCh
Q 043063            1 MEDNECRDGGKKGRLAN-T-P---LSASQILTRILPS--GGGDAENLQRILRLLTNYGVFSEHREFGGE----RKYSLTE   69 (301)
Q Consensus         1 ~~~~~a~~lglf~~L~~-g-~---~t~~ela~~~~~~--~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~----~~y~~t~   69 (301)
                      |-+++|++|||+|.|.. | |   +|.+||+.++.++  +|..+..|.|+||.|++.|+|.+..+.+++    ..|.+||
T Consensus        21 MaLk~AieLgI~diI~~~G~~~~~ls~~ela~~lp~~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~g~~e~~Y~Ltp  100 (110)
T d1fp1d1          21 AVLNAAIDLNLFEIIAKATPPGAFMSPSEIASKLPASTQHSDLPNRLDRMLRLLASYSVLTSTTRTIEDGGAERVYGLSM  100 (110)
T ss_dssp             HHHHHHHHTTHHHHHHTCSSTTCCBCHHHHHTTSCGGGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECT
T ss_pred             HHHHHHHHcCCHHHHHHcCCCCCCCCHHHHHHhCCCCCCCccHHHHHHHHHHHHHHcCccccccccCCCCCeeeEEecch
Confidence            45789999999999974 3 3   7999999998752  221234699999999999999755432122    2599999


Q ss_pred             hchhhhcCC
Q 043063           70 IGKSLVTDA   78 (301)
Q Consensus        70 ~s~~l~~~~   78 (301)
                      .+++|+++.
T Consensus       101 vsk~Lv~de  109 (110)
T d1fp1d1         101 VGKYLVPDE  109 (110)
T ss_dssp             TGGGGSTTC
T ss_pred             hhHhhcCCC
Confidence            999999864

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.98  E-value=1.2e-10  Score=97.36  Aligned_cols=81  Identities=20%  Similarity=0.149  Sum_probs=64.9

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc-CCc-ccEeeHh-hhhccC-
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS-IPA-ADAIFMK-WVLTTW-  216 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~-~p~-~D~v~~~-~vlh~~-  216 (301)
                      ...+|||||||+|             +++|+ +.+++.|++     ..+++|+.+|+.+. ++. .|+|++. .+++++ 
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~  116 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYII  116 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGCC
T ss_pred             CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeeccC
Confidence            3478999999996             67898 888887764     35799999999765 444 4988864 677766 


Q ss_pred             ChHHHHHHHHHHHHhCCCCCEEEE
Q 043063          217 TDDECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       217 ~d~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      +.++..++|+++++.|+|||.+++
T Consensus       117 ~~~~~~~~l~~~~~~LkpgG~~i~  140 (246)
T d1y8ca_         117 DSDDLKKYFKAVSNHLKEGGVFIF  140 (246)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             CHHHHHHHHHHHHHhCCCCeEEEE
Confidence            456778999999999999998885

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=1e-10  Score=99.00  Aligned_cols=79  Identities=15%  Similarity=0.170  Sum_probs=58.1

Q ss_pred             ccEeeHhhhhccCCh--HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHH
Q 043063          204 ADAIFMKWVLTTWTD--DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEF  281 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~  281 (301)
                      .|+|++..+||+.+.  ++-.++|+++++.|||||.|++.+......-          .....     .......|.+++
T Consensus       158 fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~----------~~~~~-----~~~~~~~t~e~v  222 (263)
T d2g72a1         158 ADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY----------LAGEA-----RLTVVPVSEEEV  222 (263)
T ss_dssp             EEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE----------EETTE-----EEECCCCCHHHH
T ss_pred             cCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCccc----------ccCCc-----ccccCCCCHHHH
Confidence            499999999998752  4568999999999999999999887543210          00000     111233599999


Q ss_pred             HHHHHhCCCCceEEEE
Q 043063          282 KQLGFSAGFPHLRLYR  297 (301)
Q Consensus       282 ~~~l~~aGf~~~~~~~  297 (301)
                      +++|+++||+++++..
T Consensus       223 ~~~l~~aGf~v~~~~~  238 (263)
T d2g72a1         223 REALVRSGYKVRDLRT  238 (263)
T ss_dssp             HHHHHHTTEEEEEEEE
T ss_pred             HHHHHHCCCeEEEEEE
Confidence            9999999999887653

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3e-10  Score=94.03  Aligned_cols=119  Identities=16%  Similarity=0.110  Sum_probs=77.4

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCc---cCCc--ccEe-----eH
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFK---SIPA--ADAI-----FM  209 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~---~~p~--~D~v-----~~  209 (301)
                      ...+|||||||+|              +++|+ |.+++.|++     ..++.++.+|...   +++.  .|.|     ..
T Consensus        53 ~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~~  132 (229)
T d1zx0a1          53 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYPL  132 (229)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCCC
T ss_pred             CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccccc
Confidence            4579999999996              57897 888887764     3567777777543   2443  2444     46


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCC
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAG  289 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aG  289 (301)
                      ...++++.+.  ..+++.+++.|+|||++++.+.....       .......+..         .......+...+.++|
T Consensus       133 ~~~~~~~~~~--~~~~~~~~r~LkpGG~~~~~~~~~~~-------~~~~~~~~~~---------~~~~~~~~~~~l~~ag  194 (229)
T d1zx0a1         133 SEETWHTHQF--NFIKNHAFRLLKPGGVLTYCNLTSWG-------ELMKSKYSDI---------TIMFEETQVPALLEAG  194 (229)
T ss_dssp             BGGGTTTHHH--HHHHHTHHHHEEEEEEEEECCHHHHH-------HHTTTTCSCH---------HHHHHHHTHHHHHHTT
T ss_pred             ccccccccCH--HHHHHHHHHHcCCCcEEEEEecCCcc-------hhhhhhhhhc---------chhhhhHHHHHHHHCC
Confidence            7888887775  48999999999999999875432210       0000011110         1112456667788899


Q ss_pred             CCceEEE
Q 043063          290 FPHLRLY  296 (301)
Q Consensus       290 f~~~~~~  296 (301)
                      |+..++.
T Consensus       195 F~~~~i~  201 (229)
T d1zx0a1         195 FRRENIR  201 (229)
T ss_dssp             CCGGGEE
T ss_pred             CeeEEEE
Confidence            9877654

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.84  E-value=1.1e-09  Score=88.23  Aligned_cols=90  Identities=11%  Similarity=0.185  Sum_probs=69.1

Q ss_pred             hhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCCc--ccE
Q 043063          151 ILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIPA--ADA  206 (301)
Q Consensus       151 ~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p~--~D~  206 (301)
                      +++.++ ..+..+|||||||+|             +++|. |.+++.+++        ..++++..+|+++.++.  .|+
T Consensus        44 Li~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~fD~  122 (194)
T d1dusa_          44 LVENVV-VDKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRKYNK  122 (194)
T ss_dssp             HHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSCEEE
T ss_pred             HHHhCC-cCCCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCCceE
Confidence            444453 556789999999996             56787 777766643        35799999999887554  599


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      |++..++|... +...++++++.+.|+|||++++..
T Consensus       123 Ii~~~p~~~~~-~~~~~~l~~~~~~LkpgG~l~i~~  157 (194)
T d1dusa_         123 IITNPPIRAGK-EVLHRIIEEGKELLKDNGEIWVVI  157 (194)
T ss_dssp             EEECCCSTTCH-HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEcccEEecc-hhhhhHHHHHHHhcCcCcEEEEEE
Confidence            99988876544 445789999999999999987743

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.79  E-value=2.7e-09  Score=86.85  Aligned_cols=89  Identities=9%  Similarity=0.103  Sum_probs=64.1

Q ss_pred             cCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc--c-cEeeH
Q 043063          154 GYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA--A-DAIFM  209 (301)
Q Consensus       154 ~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~--~-D~v~~  209 (301)
                      .++ +++..+|||||||+|               +.+|. |.+++.+++    .+++.++.+|...+ .+.  . ++.++
T Consensus        51 ~l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v  129 (209)
T d1nt2a_          51 RLK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI  129 (209)
T ss_dssp             CCC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred             cCC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE
Confidence            354 788899999999996               46787 778776643    57999999998765 332  2 22222


Q ss_pred             hhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          210 KWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       210 ~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      .+.++++.+  ...+|+++++.|+|||+++|.+...
T Consensus       130 ~~~~~~~~~--~~~~l~~~~~~LkpgG~l~i~~~~~  163 (209)
T d1nt2a_         130 YQDIAQKNQ--IEILKANAEFFLKEKGEVVIMVKAR  163 (209)
T ss_dssp             EECCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             EecccChhh--HHHHHHHHHHHhccCCeEEEEEEcc
Confidence            234444444  3588999999999999999887543

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=6.8e-09  Score=90.31  Aligned_cols=95  Identities=16%  Similarity=0.279  Sum_probs=71.1

Q ss_pred             HHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCC---------------CCCceeEEeCCC
Q 043063          149 TSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAP---------------SIPGVTHIGGDM  197 (301)
Q Consensus       149 ~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~---------------~~~ri~~~~gd~  197 (301)
                      ..+++.+. .++..+|||||||+|               +++|+ |.+++.|+               +..+|+|+.||+
T Consensus       141 ~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~  219 (328)
T d1nw3a_         141 AQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDF  219 (328)
T ss_dssp             HHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCT
T ss_pred             HHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcc
Confidence            45666664 788899999999996               57887 66665543               246899999999


Q ss_pred             Ccc-CC----cccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          198 FKS-IP----AADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       198 ~~~-~p----~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      .+. +.    .+|+|++...+ ++++  ..+.|+++++.|||||++++.+...+.
T Consensus       220 ~~~~~~~~~~~advi~~~~~~-f~~~--~~~~l~e~~r~LKpGg~iv~~~~~~~~  271 (328)
T d1nw3a_         220 LSEEWRERIANTSVIFVNNFA-FGPE--VDHQLKERFANMKEGGRIVSSKPFAPL  271 (328)
T ss_dssp             TSHHHHHHHHHCSEEEECCTT-TCHH--HHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             cccccccccCcceEEEEccee-cchH--HHHHHHHHHHhCCCCcEEEEecccCCC
Confidence            864 32    35888876554 3333  468899999999999999998876653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=3.7e-09  Score=88.52  Aligned_cols=104  Identities=16%  Similarity=0.259  Sum_probs=76.0

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc--ccEeeHhhhhccCC
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMKWVLTTWT  217 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~  217 (301)
                      .+..+|||+|||+|             +.+|. |.+++.|++     .-++++..+|+....+.  .|+|++....    
T Consensus       119 ~~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~~----  194 (254)
T d2nxca1         119 RPGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYA----  194 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCH----
T ss_pred             CccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhcccc----
Confidence            45689999999996             56797 788877764     23567888988765554  5999875433    


Q ss_pred             hHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhccccccCHHHHHHHHHhCCCCceEEEE
Q 043063          218 DDECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRAKGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       218 d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                       ....++++.++++|+|||+|++.+...+                              ...++.+.++++||+..+...
T Consensus       195 -~~l~~l~~~~~~~LkpGG~lilSgil~~------------------------------~~~~v~~~~~~~Gf~~~~~~~  243 (254)
T d2nxca1         195 -ELHAALAPRYREALVPGGRALLTGILKD------------------------------RAPLVREAMAGAGFRPLEEAA  243 (254)
T ss_dssp             -HHHHHHHHHHHHHEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTCEEEEEEE
T ss_pred             -ccHHHHHHHHHHhcCCCcEEEEEecchh------------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence             2356789999999999999998643211                              245667788888998877654

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.70  E-value=3.1e-09  Score=89.94  Aligned_cols=76  Identities=21%  Similarity=0.363  Sum_probs=61.2

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCCh
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTD  218 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d  218 (301)
                      ....+|||||||+|               +++|+ +.+++.|++ .++++|+.+|+.+. ++.  .|+|++.+++|+   
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~---  159 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK---  159 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence            45679999999996               46798 788887765 57999999998764 554  499998877765   


Q ss_pred             HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          219 DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       219 ~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                            +++++++|+|||++++..+
T Consensus       160 ------~~e~~rvLkpgG~l~~~~p  178 (268)
T d1p91a_         160 ------AEELARVVKPGGWVITATP  178 (268)
T ss_dssp             ------HHHHHHHEEEEEEEEEEEE
T ss_pred             ------HHHHHHHhCCCcEEEEEee
Confidence                  4668889999999999875

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.60  E-value=5.7e-09  Score=83.30  Aligned_cols=81  Identities=22%  Similarity=0.243  Sum_probs=63.7

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc-C--CcccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS-I--PAADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~-~--p~~D~v~~~~vl  213 (301)
                      ..+..+|||||||+|             +.+|. |.+++.+++       .+||+++.+|+.+. .  +..|+|++....
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~~D~v~~~~~~  110 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSG  110 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCEEEEEESCCT
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCCcCEEEEeCcc
Confidence            667889999999996             56798 888877764       27999999998764 2  336999887655


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ++     ...+++++.+.|+|||++++...
T Consensus       111 ~~-----~~~~~~~~~~~LkpgG~lvi~~~  135 (186)
T d1l3ia_         111 GE-----LQEILRIIKDKLKPGGRIIVTAI  135 (186)
T ss_dssp             TC-----HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             cc-----chHHHHHHHHHhCcCCEEEEEee
Confidence            43     24789999999999999987654

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.59  E-value=1.5e-08  Score=85.34  Aligned_cols=100  Identities=23%  Similarity=0.297  Sum_probs=73.0

Q ss_pred             HHHHHhcCCccc----hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------C
Q 043063          136 MRKAMSGVSVPF----MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------I  187 (301)
Q Consensus       136 ~~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~  187 (301)
                      |...|.-.++..    +..++..++ .++..+|||+|||+|                +.+|. |+.++.|++       .
T Consensus        76 ~~~~~~r~~qiiypkd~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~  154 (266)
T d1o54a_          76 EIMNMKRRTQIVYPKDSSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLI  154 (266)
T ss_dssp             HHHTCCC-CCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCG
T ss_pred             HHhhccCCccccchHHHHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccc
Confidence            444555444432    345666775 889999999999995                46787 777777654       3


Q ss_pred             CceeEEeCCCCccCCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          188 PGVTHIGGDMFKSIPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       188 ~ri~~~~gd~~~~~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +++.+..+|+...++.  .|.|     +++.++..  .+|++++++|+|||+|++..+
T Consensus       155 ~~v~~~~~d~~~~~~~~~~D~V-----~~d~p~p~--~~l~~~~~~LKpGG~lv~~~P  205 (266)
T d1o54a_         155 ERVTIKVRDISEGFDEKDVDAL-----FLDVPDPW--NYIDKCWEALKGGGRFATVCP  205 (266)
T ss_dssp             GGEEEECCCGGGCCSCCSEEEE-----EECCSCGG--GTHHHHHHHEEEEEEEEEEES
T ss_pred             cCcEEEeccccccccccceeee-----EecCCCHH--HHHHHHHhhcCCCCEEEEEeC
Confidence            7899999997665554  4765     45788764  789999999999999998654

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.58  E-value=1.4e-08  Score=85.08  Aligned_cols=103  Identities=16%  Similarity=0.230  Sum_probs=77.0

Q ss_pred             HHHHHhcCCccc----hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC--------
Q 043063          136 MRKAMSGVSVPF----MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS--------  186 (301)
Q Consensus       136 ~~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~--------  186 (301)
                      |...|.-.++..    +..++..++ .++..+|||+|||+|                +.+|. ++.++.|++        
T Consensus        69 ~~~~~~r~tqiiypkD~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~  147 (264)
T d1i9ga_          69 YVMSMPRGPQVIYPKDAAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQ  147 (264)
T ss_dssp             HHTTSCSCSCCCCHHHHHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTS
T ss_pred             HHhhccCCccccchHHHHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccC
Confidence            444455444432    345666675 888999999999995                46787 777777653        


Q ss_pred             -CCceeEEeCCCCcc-CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          187 -IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       187 -~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                       .+++.++.+|+.+. +|+  .|.|++     |+++..  ..+.+++++|+|||++++..++..
T Consensus       148 ~~~nv~~~~~d~~~~~~~~~~fDaV~l-----dlp~P~--~~l~~~~~~LkpGG~lv~~~P~i~  204 (264)
T d1i9ga_         148 PPDNWRLVVSDLADSELPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVAGGVLMVYVATVT  204 (264)
T ss_dssp             CCTTEEEECSCGGGCCCCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEEEEEEEEEESSHH
T ss_pred             CCceEEEEecccccccccCCCcceEEE-----ecCCHH--HHHHHHHhccCCCCEEEEEeCccC
Confidence             37999999999865 665  498875     567764  889999999999999998876553

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=98.57  E-value=1.4e-08  Score=82.71  Aligned_cols=83  Identities=19%  Similarity=0.426  Sum_probs=63.9

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---  203 (301)
                      .++..++ .++..+|||||||+|                +.+|. |.+++.+++      ..++.++.+|..+..+.   
T Consensus        66 ~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          66 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            3455664 888899999999995                34576 777777654      47899999998765442   


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .|+|++...+++.+++        +.+.|+|||+|++.
T Consensus       145 fD~I~~~~~~~~~p~~--------l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         145 YDVIFVTVGVDEVPET--------WFTQLKEGGRVIVP  174 (213)
T ss_dssp             EEEEEECSBBSCCCHH--------HHHHEEEEEEEEEE
T ss_pred             hhhhhhhccHHHhHHH--------HHHhcCCCcEEEEE
Confidence            4999999999988763        45679999999874

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.55  E-value=6e-08  Score=85.98  Aligned_cols=96  Identities=15%  Similarity=0.277  Sum_probs=68.0

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC---------------CCceeE-EeC
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS---------------IPGVTH-IGG  195 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~---------------~~ri~~-~~g  195 (301)
                      +..+++.++ .++..+|||||||.|               +++|+ |.+++.|++               ...+.+ ..+
T Consensus       205 i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~  283 (406)
T d1u2za_         205 LSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKK  283 (406)
T ss_dssp             HHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESS
T ss_pred             HHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeee
Confidence            456667775 888899999999995               57898 777766643               123333 455


Q ss_pred             CCCcc------CCcccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCC
Q 043063          196 DMFKS------IPAADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPD  247 (301)
Q Consensus       196 d~~~~------~p~~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~  247 (301)
                      +++..      ++.+|++++.+.+ +.  ++..+.|+++++.|+|||+|++.+...+.
T Consensus       284 ~f~~~~~~d~~~~~adVV~inn~~-f~--~~l~~~L~ei~r~LKPGGrIVs~~~~~~~  338 (406)
T d1u2za_         284 SFVDNNRVAELIPQCDVILVNNFL-FD--EDLNKKVEKILQTAKVGCKIISLKSLRSL  338 (406)
T ss_dssp             CSTTCHHHHHHGGGCSEEEECCTT-CC--HHHHHHHHHHHTTCCTTCEEEESSCSSCT
T ss_pred             chhhccccccccccceEEEEeccc-Cc--hHHHHHHHHHHHhcCCCcEEEEecccCCC
Confidence            66543      3346888876543 23  34568999999999999999999876653

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=1.2e-08  Score=87.15  Aligned_cols=83  Identities=20%  Similarity=0.293  Sum_probs=59.7

Q ss_pred             CCcceEEeecCCce-------------eeeeh-hHHHhhCCCC----------CceeEEeCCCCcc---CC--c-ccEee
Q 043063          159 KGVKRLVDVGGSAG-------------INFDL-PEVVAEAPSI----------PGVTHIGGDMFKS---IP--A-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~~----------~ri~~~~gd~~~~---~p--~-~D~v~  208 (301)
                      .+..+|||||||+|             +++|+ +.+++.|++.          .+..+...|+...   +|  . .|+|+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~  134 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI  134 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEE
Confidence            35679999999996             67898 8888776531          2445556666431   33  2 47776


Q ss_pred             H-hhhhccCCh-----HHHHHHHHHHHHhCCCCCEEEEe
Q 043063          209 M-KWVLTTWTD-----DECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       209 ~-~~vlh~~~d-----~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      + ..+++++++     ++...+|+++++.|+|||+|++.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~  173 (292)
T d1xvaa_         135 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVID  173 (292)
T ss_dssp             ECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             EecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEe
Confidence            5 457877754     45778999999999999998873

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=98.53  E-value=2.7e-08  Score=82.76  Aligned_cols=87  Identities=16%  Similarity=0.149  Sum_probs=63.9

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--  203 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--  203 (301)
                      .++...+ ..+..+|||+|||+|                +.+|. ++.++.|++       ..+|++..+|+.+.+++  
T Consensus        76 ~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~  154 (250)
T d1yb2a1          76 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM  154 (250)
T ss_dssp             -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred             HHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccce
Confidence            4455564 788899999999995                35676 666666543       37899999999876665  


Q ss_pred             ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          204 ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       204 ~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      .|.|++     +.++..  .+|++++++|+|||++++.-++
T Consensus       155 fD~V~l-----d~p~p~--~~l~~~~~~LKpGG~lv~~~P~  188 (250)
T d1yb2a1         155 YDAVIA-----DIPDPW--NHVQKIASMMKPGSVATFYLPN  188 (250)
T ss_dssp             EEEEEE-----CCSCGG--GSHHHHHHTEEEEEEEEEEESS
T ss_pred             eeeeee-----cCCchH--HHHHHHHHhcCCCceEEEEeCC
Confidence            498875     466653  7899999999999999986553

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.46  E-value=3.9e-08  Score=78.80  Aligned_cols=56  Identities=18%  Similarity=0.205  Sum_probs=46.2

Q ss_pred             CceeEEeCCCCcc-CC-c--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          188 PGVTHIGGDMFKS-IP-A--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       188 ~ri~~~~gd~~~~-~p-~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .++.+...+...+ .+ .  .|+|+|++||++++++...++|++++++|+|||.|++-..
T Consensus       113 ~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~s  172 (193)
T d1af7a2         113 NYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGHS  172 (193)
T ss_dssp             TTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECTT
T ss_pred             HHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEecC
Confidence            3456777777654 22 2  4999999999999999999999999999999999888765

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.41  E-value=2.7e-07  Score=75.61  Aligned_cols=88  Identities=23%  Similarity=0.312  Sum_probs=60.9

Q ss_pred             hcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCC----CCCceeEEeCCCCcc--CCc----cc
Q 043063          153 DGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAP----SIPGVTHIGGDMFKS--IPA----AD  205 (301)
Q Consensus       153 ~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~----~~~ri~~~~gd~~~~--~p~----~D  205 (301)
                      +.++ +++..+|||+|||+|                +.+|. |.+++.++    ....+..+.+|...+  .+.    .|
T Consensus        67 ~~l~-i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD  145 (227)
T d1g8aa_          67 KNFP-IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             CCCC-CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             cccc-cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceE
Confidence            3443 778899999999995                35687 66666543    457788888887654  221    36


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      ++++  .+++.++  ...+++++++.|+|||+++|.....
T Consensus       146 ~i~~--d~~~~~~--~~~~l~~~~~~LkpgG~lvi~~ka~  181 (227)
T d1g8aa_         146 VIFE--DVAQPTQ--AKILIDNAEVYLKRGGYGMIAVKSR  181 (227)
T ss_dssp             EEEE--CCCSTTH--HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred             EEEE--Eccccch--HHHHHHHHHHhcccCCeEEEEEECC
Confidence            5543  3433333  4588999999999999999876433

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=8e-08  Score=78.76  Aligned_cols=76  Identities=24%  Similarity=0.294  Sum_probs=59.6

Q ss_pred             CCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCCc---ccE
Q 043063          158 FKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIPA---ADA  206 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p~---~D~  206 (301)
                      .++..+|||||||+|                +.+|. +++++.+++           ..++.++.+|.+...+.   .|+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~~~~~fD~  153 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  153 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccchhhhhhh
Confidence            567789999999995                35676 777776643           36899999998876443   499


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      |++...+++.+++        +.+.|+|||+|++.
T Consensus       154 I~~~~~~~~ip~~--------l~~~LkpGG~LV~p  180 (224)
T d1i1na_         154 IHVGAAAPVVPQA--------LIDQLKPGGRLILP  180 (224)
T ss_dssp             EEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             hhhhcchhhcCHH--------HHhhcCCCcEEEEE
Confidence            9999999888753        55689999999884

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.38  E-value=1.2e-07  Score=76.49  Aligned_cols=81  Identities=14%  Similarity=0.195  Sum_probs=58.3

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc--ccEeeHhhhhc
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA--ADAIFMKWVLT  214 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh  214 (301)
                      ..|||||||+|               +++|. +..+..+.+      .++|.++.+|+..-   +|.  .|.|++.+..+
T Consensus        31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P  110 (204)
T d2fcaa1          31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP  110 (204)
T ss_dssp             CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred             ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence            47999999996               57887 666555432      47899999998652   554  38877766654


Q ss_pred             cCChHH------HHHHHHHHHHhCCCCCEEEEec
Q 043063          215 TWTDDE------CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       215 ~~~d~~------~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      .+....      ...+|+.+++.|+|||.|+|..
T Consensus       111 ~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T  144 (204)
T d2fcaa1         111 WPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT  144 (204)
T ss_dssp             CCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred             cchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence            333322      1479999999999999998863

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.28  E-value=1.8e-07  Score=76.43  Aligned_cols=83  Identities=18%  Similarity=0.269  Sum_probs=63.0

Q ss_pred             HhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCccCCc---ccEee
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKSIPA---ADAIF  208 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~~p~---~D~v~  208 (301)
                      .++..++ .++..+|||||||+|             +.+|. +..++.+++    ..+++++.+|.+...|.   .|+|+
T Consensus        61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~Ii  139 (224)
T d1vbfa_          61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDRVV  139 (224)
T ss_dssp             HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred             HHHHHhh-hcccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHHHH
Confidence            3556665 888899999999996             34565 666665543    58999999998776554   49999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      +...+++.++.        +.+.|+|||+|++.
T Consensus       140 v~~a~~~ip~~--------l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         140 VWATAPTLLCK--------PYEQLKEGGIMILP  164 (224)
T ss_dssp             ESSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             hhcchhhhhHH--------HHHhcCCCCEEEEE
Confidence            99888877752        44679999999874

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3e-07  Score=79.25  Aligned_cols=104  Identities=17%  Similarity=0.206  Sum_probs=73.0

Q ss_pred             HHHHHHhcCCccc----hHHhhhcCCCCCCcceEEeecCCce----------------eeeeh-hHHHhhCCC-------
Q 043063          135 LMRKAMSGVSVPF----MTSILDGYDGFKGVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------  186 (301)
Q Consensus       135 ~~~~~m~~~~~~~----~~~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------  186 (301)
                      .|...|.-.++.+    +..++..++ ..+..+|||+|||+|                +.+|. ++.++.|++       
T Consensus        70 d~~~~~~r~tqiiypkD~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~  148 (324)
T d2b25a1          70 DYVVLMKRGTAITFPKDINMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRD  148 (324)
T ss_dssp             HHHHHSCCSSCCCCHHHHHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             HHhhccCCCCcccccccHHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhh
Confidence            3555566555432    345666675 888999999999995                35676 666665542       


Q ss_pred             ----------CCceeEEeCCCCcc---CCc--ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          187 ----------IPGVTHIGGDMFKS---IPA--ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       187 ----------~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                                .+++++..+|+...   ++.  .|.|++     ++++..  .+|.+++++|+|||+|++.-++..
T Consensus       149 ~~~~~~~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKpGG~lv~~~P~i~  216 (324)
T d2b25a1         149 SWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKHGGVCAVYVVNIT  216 (324)
T ss_dssp             HHTTTCSSCCCCCEEEEESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEEEEEEEEEESSHH
T ss_pred             hhhhhhhhccccceeEEecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccCCCEEEEEeCCHH
Confidence                      36899999998654   333  488875     566653  689999999999999998776553

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=2.1e-06  Score=71.98  Aligned_cols=108  Identities=22%  Similarity=0.289  Sum_probs=74.1

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc--ccEeeHhhh--
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA--ADAIFMKWV--  212 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~--~D~v~~~~v--  212 (301)
                      ....+|||+|||+|               +..|. +..++.|++      ..||+|+.+|++++++.  .|+|+++--  
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi  186 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  186 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence            34578999999996               46687 777776654      36899999999988664  599887521  


Q ss_pred             -----------hccCCh----------HHHHHHHHHHHHhCCCCCEEEEeccccCCCCCChHHhhhhhhccHHHHhhhhc
Q 043063          213 -----------LTTWTD----------DECKLIMENCYKAIPAGGKLIACEPVLPDDSNESQRTRALLEGDIFVMTIYRA  271 (301)
Q Consensus       213 -----------lh~~~d----------~~~~~iL~~~~~aL~pgg~lli~e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~  271 (301)
                                 +.+=|.          +...++++.+.+.|+|||.+++ |.  ...                       
T Consensus       187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l-Ei--g~~-----------------------  240 (274)
T d2b3ta1         187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL-EH--GWQ-----------------------  240 (274)
T ss_dssp             CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE-EC--CSS-----------------------
T ss_pred             hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE-EE--Cch-----------------------
Confidence                       111110          2345788888999999998776 21  100                       


Q ss_pred             cccccCHHHHHHHHHhCCCCceEEEE
Q 043063          272 KGKHMTEQEFKQLGFSAGFPHLRLYR  297 (301)
Q Consensus       272 ~g~~rt~~e~~~~l~~aGf~~~~~~~  297 (301)
                           ......+++++.||..+++..
T Consensus       241 -----q~~~v~~~l~~~gf~~i~~~k  261 (274)
T d2b3ta1         241 -----QGEAVRQAFILAGYHDVETCR  261 (274)
T ss_dssp             -----CHHHHHHHHHHTTCTTCCEEE
T ss_pred             -----HHHHHHHHHHHCCCCeEEEEE
Confidence                 235567788888998776553

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.14  E-value=1.8e-06  Score=69.31  Aligned_cols=79  Identities=19%  Similarity=0.400  Sum_probs=55.7

Q ss_pred             ceEEeecCCce---------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CCc--ccEeeHhhhhc
Q 043063          162 KRLVDVGGSAG---------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IPA--ADAIFMKWVLT  214 (301)
Q Consensus       162 ~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p~--~D~v~~~~vlh  214 (301)
                      ..+||||||+|               +++|. +.++..+.+      ..+|.++.+|+..-   +|.  .|.|++.+. .
T Consensus        33 plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP-d  111 (204)
T d1yzha1          33 PIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS-D  111 (204)
T ss_dssp             CEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC-C
T ss_pred             CeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhccccc-c
Confidence            47999999996               57887 666655432      47899999998652   454  377664332 2


Q ss_pred             cCChHH-------HHHHHHHHHHhCCCCCEEEEe
Q 043063          215 TWTDDE-------CKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       215 ~~~d~~-------~~~iL~~~~~aL~pgg~lli~  241 (301)
                      .|+...       ...+|+.+++.|+|||.|++.
T Consensus       112 Pw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~  145 (204)
T d1yzha1         112 PWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFK  145 (204)
T ss_dssp             CCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEE
T ss_pred             cccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEE
Confidence            344332       147899999999999999875

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.14  E-value=3.9e-07  Score=78.51  Aligned_cols=82  Identities=21%  Similarity=0.247  Sum_probs=59.8

Q ss_pred             CcceEEeecCCce--------------eeeehhHHHhhCC-------CCCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDLPEVVAEAP-------SIPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~-------~~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|              +.+|..+....++       -.++|+++.+|+.+. .|.  .|+|++..+.|.
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~  112 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC  112 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred             CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence            3578999999996              3567643332222       247899999999875 553  599988777776


Q ss_pred             CCh-HHHHHHHHHHHHhCCCCCEEEEe
Q 043063          216 WTD-DECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       216 ~~d-~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      ... .....++..+.+.|+|||+++-.
T Consensus       113 l~~e~~~~~~l~~~~r~Lkp~G~iiP~  139 (316)
T d1oria_         113 LFYESMLNTVLHARDKWLAPDGLIFPD  139 (316)
T ss_dssp             BTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred             eccHHHHHHHHHHHHhcCCCCeEEEee
Confidence            544 34678999999999999988743

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=4.4e-07  Score=78.55  Aligned_cols=81  Identities=20%  Similarity=0.313  Sum_probs=59.8

Q ss_pred             CcceEEeecCCce--------------eeeehhHHHhhCCC-------CCceeEEeCCCCcc-CCc--ccEeeHhhhhcc
Q 043063          160 GVKRLVDVGGSAG--------------INFDLPEVVAEAPS-------IPGVTHIGGDMFKS-IPA--ADAIFMKWVLTT  215 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dlp~v~~~a~~-------~~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~  215 (301)
                      +..+|||||||+|              +++|..+++..+++       .++|+++.+|+.+. +|.  .|+|++..+.|.
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~  117 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF  117 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence            3579999999996              45677555544432       47899999998865 564  599988777765


Q ss_pred             CCh-HHHHHHHHHHHHhCCCCCEEEE
Q 043063          216 WTD-DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       216 ~~d-~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      ... .....++....+.|+|||+++-
T Consensus       118 ~~~e~~~~~~~~a~~r~LkpgG~iiP  143 (328)
T d1g6q1_         118 LLYESMMDTVLYARDHYLVEGGLIFP  143 (328)
T ss_dssp             BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred             eccchhHHHHHHHHHhccCCCeEEEe
Confidence            443 3356788888999999998863

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.2e-06  Score=75.12  Aligned_cols=100  Identities=19%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             CchHHHHHHHHHhcCCccchHHhhhcCCCCCCcceEEeecCCce--------------eeeehhHHHhhC-------CCC
Q 043063          129 MPEMNGLMRKAMSGVSVPFMTSILDGYDGFKGVKRLVDVGGSAG--------------INFDLPEVVAEA-------PSI  187 (301)
Q Consensus       129 ~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dlp~v~~~a-------~~~  187 (301)
                      +..+.+.|.+++..           ..+ ..+..+|||||||+|              +.+|..+....+       ...
T Consensus        16 D~~r~~~y~~ai~~-----------~~~-~~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~   83 (311)
T d2fyta1          16 DKIRTESYRDFIYQ-----------NPH-IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLE   83 (311)
T ss_dssp             CHHHHHHHHHHHHH-----------CGG-GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCT
T ss_pred             CHHHHHHHHHHHHh-----------ccc-cCCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCC
Confidence            44555667666532           222 334678999999996              456763322221       225


Q ss_pred             CceeEEeCCCCcc-CCc--ccEeeHhhhhccCChH-HHHHHHHHHHHhCCCCCEEEE
Q 043063          188 PGVTHIGGDMFKS-IPA--ADAIFMKWVLTTWTDD-ECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       188 ~ri~~~~gd~~~~-~p~--~D~v~~~~vlh~~~d~-~~~~iL~~~~~aL~pgg~lli  240 (301)
                      ++|+++.+|+.+. .|.  .|+|++..+.|....+ ....++....+.|+|||+++-
T Consensus        84 ~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~iip  140 (311)
T d2fyta1          84 DTITLIKGKIEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVYP  140 (311)
T ss_dssp             TTEEEEESCTTTSCCSCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred             ccceEEEeeHHHhcCccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEec
Confidence            8999999998875 553  5999988777765544 355777777889999998874

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.07  E-value=7.7e-07  Score=72.08  Aligned_cols=83  Identities=27%  Similarity=0.344  Sum_probs=63.4

Q ss_pred             HhhhcCCCCCCcceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCCc---cc
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIPA---AD  205 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p~---~D  205 (301)
                      .++..++ .++..+|||||||+|              +.+|. +++++.+++      .+++.++.+|.+...|.   .|
T Consensus        69 ~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~pfD  147 (215)
T d1jg1a_          69 IMLEIAN-LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  147 (215)
T ss_dssp             HHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhhc-cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCcce
Confidence            3455564 778899999999995              34565 777776654      48999999999876553   49


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      +|++...++..|+.        +.+.|+|||+|++.
T Consensus       148 ~Iiv~~a~~~ip~~--------l~~qL~~gGrLv~p  175 (215)
T d1jg1a_         148 VIIVTAGAPKIPEP--------LIEQLKIGGKLIIP  175 (215)
T ss_dssp             EEEECSBBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             eEEeecccccCCHH--------HHHhcCCCCEEEEE
Confidence            99999998877763        34569999999874

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.78  E-value=5.1e-06  Score=67.57  Aligned_cols=76  Identities=24%  Similarity=0.373  Sum_probs=57.9

Q ss_pred             CCCcceEEeecCCce---------------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCccCCc-
Q 043063          158 FKGVKRLVDVGGSAG---------------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKSIPA-  203 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~~p~-  203 (301)
                      .++..+|||||||+|                     +.+|. ++.++.+++           ..+|.+..+|..+..|. 
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~~~~  157 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN  157 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEecccccccccc
Confidence            667889999999996                     13465 666665543           25899999999876443 


Q ss_pred             --ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          204 --ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       204 --~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                        .|.|++...++..|+.        +.+.|+|||++++.
T Consensus       158 ~~fD~Iiv~~a~~~~p~~--------l~~~Lk~gG~lV~p  189 (223)
T d1r18a_         158 APYNAIHVGAAAPDTPTE--------LINQLASGGRLIVP  189 (223)
T ss_dssp             CSEEEEEECSCBSSCCHH--------HHHTEEEEEEEEEE
T ss_pred             cceeeEEEEeechhchHH--------HHHhcCCCcEEEEE
Confidence              4999999999887752        45689999999874

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.76  E-value=4.3e-06  Score=55.74  Aligned_cols=55  Identities=13%  Similarity=0.074  Sum_probs=47.2

Q ss_pred             cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      +.|++.+.  ++|.|+.|||+++|+    ++..+.|+|..|+..|+++++    ++++|++++..
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~----~~st~~rll~tL~~~g~l~~~----~~g~y~lG~~l   64 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNM----SVSNAYKYMVVLEEKGFVLRK----KDKRYVPGYKL   64 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEC----TTSCEEECTHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEEC----CCCCEeecHHH
Confidence            34667775  368999999999999    799999999999999999998    47889999753

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.76  E-value=8.9e-06  Score=67.67  Aligned_cols=82  Identities=16%  Similarity=0.080  Sum_probs=60.0

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc--ccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA--ADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~--~D~v~~~~vl  213 (301)
                      .++..+|||+|||+|              +.+|+ |..++.+++       .++|++..+|.++..+.  +|.|++..  
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~--  182 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY--  182 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC--
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECC--
Confidence            356789999999996              45687 766665543       47899999999876444  69877642  


Q ss_pred             ccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          214 TTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                         +. .+..+|..+.+.|+|||.|.+.+.+.
T Consensus       183 ---p~-~~~~~l~~a~~~l~~gG~lh~~~~~~  210 (260)
T d2frna1         183 ---VV-RTHEFIPKALSIAKDGAIIHYHNTVP  210 (260)
T ss_dssp             ---CS-SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred             ---CC-chHHHHHHHHhhcCCCCEEEEEeccc
Confidence               21 23477888899999999998776643

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.06  E-value=5.4e-05  Score=64.89  Aligned_cols=88  Identities=18%  Similarity=0.212  Sum_probs=60.5

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CC----cccEee
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IP----AADAIF  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p----~~D~v~  208 (301)
                      .++..+|||++||+|              +.+|. +..++.+++       .++++++.+|+++.   ++    ..|+|+
T Consensus       143 ~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi  222 (324)
T d2as0a2         143 VQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV  222 (324)
T ss_dssp             CCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence            456789999999995              46787 777766653       36899999999864   22    249988


Q ss_pred             Hhhh---hccCChH----HHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          209 MKWV---LTTWTDD----ECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       209 ~~~v---lh~~~d~----~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +---   .+.-...    .-.++++.+.+.|+|||+|+.+.+..
T Consensus       223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~  266 (324)
T d2as0a2         223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  266 (324)
T ss_dssp             ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence            6322   1111111    12458899999999999999887543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.99  E-value=9.2e-05  Score=58.39  Aligned_cols=98  Identities=16%  Similarity=0.225  Sum_probs=67.9

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCcc------
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKS------  200 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~------  200 (301)
                      ..++++.+. ..+...+||++||+|               +++|. |.+++.+++     .+|+.++.++|.+.      
T Consensus        12 l~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~   90 (192)
T d1m6ya2          12 VREVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKT   90 (192)
T ss_dssp             HHHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHH
Confidence            345666664 666789999999995               67898 888888764     47999999998642      


Q ss_pred             CC--cccEeeH-----hhhhccCCh--HHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          201 IP--AADAIFM-----KWVLTTWTD--DECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       201 ~p--~~D~v~~-----~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      ++  ..|.|++     ++-+-.-.+  ....+.|..+.+.|+|||+++|+.+...
T Consensus        91 ~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~  145 (192)
T d1m6ya2          91 LGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSL  145 (192)
T ss_dssp             TTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHH
T ss_pred             cCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccH
Confidence            22  2365543     333311111  2245789999999999999999887554

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.00011  Score=59.03  Aligned_cols=84  Identities=18%  Similarity=0.289  Sum_probs=54.9

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc---------ccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA---------ADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~---------~D~  206 (301)
                      ++++||+||+|.|                +.+|. |+..+.+++       .++|+++.||..+.+|.         .|+
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~  135 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM  135 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence            4689999999885                45676 666665543       47899999998754332         388


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      +++-   |+.+.......+.++.+.|+|||.|++-+...+
T Consensus       136 ifiD---~~~~~~~~~~~l~~~~~lLkpGGvIv~Ddvl~~  172 (214)
T d2cl5a1         136 VFLD---HWKDRYLPDTLLLEKCGLLRKGTVLLADNVIVP  172 (214)
T ss_dssp             EEEC---SCGGGHHHHHHHHHHTTCEEEEEEEEESCCCCC
T ss_pred             eeec---ccccccccHHHHHHHhCccCCCcEEEEeCcCCC
Confidence            7764   222222223346667778999997655544444

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.84  E-value=0.00016  Score=54.74  Aligned_cols=79  Identities=10%  Similarity=0.073  Sum_probs=52.5

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc--CC--cccEeeHhhhh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS--IP--AADAIFMKWVL  213 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~--~p--~~D~v~~~~vl  213 (301)
                      ...+|||+|||+|              +.+|. |..++.+++       .++++++.+|.++.  .+  ..|+|++--- 
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP-   92 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP-   92 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred             CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence            3579999999996              45676 666654432       47899999998764  22  2599977421 


Q ss_pred             ccCChHHHHHHHHHHHH--hCCCCCEEEEe
Q 043063          214 TTWTDDECKLIMENCYK--AIPAGGKLIAC  241 (301)
Q Consensus       214 h~~~d~~~~~iL~~~~~--aL~pgg~lli~  241 (301)
                        +.......+|..+.+  .|+|+|.+++-
T Consensus        93 --y~~~~~~~~l~~i~~~~~L~~~g~iiiE  120 (152)
T d2esra1          93 --YAKETIVATIEALAAKNLLSEQVMVVCE  120 (152)
T ss_dssp             --SHHHHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             --hccchHHHHHHHHHHCCCcCCCeEEEEE
Confidence              223344566666654  58898887653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.75  E-value=0.00023  Score=60.44  Aligned_cols=83  Identities=18%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC-----------CCceeEEeCCCCcc---CCc-ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-----------IPGVTHIGGDMFKS---IPA-ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-----------~~ri~~~~gd~~~~---~p~-~D~v  207 (301)
                      .++++||.||+|.|               +++|+ |.|++.+++           .+|++++.+|.++-   .+. .|+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            45789999999996               45677 888876643           47999999999874   233 5998


Q ss_pred             eHhhhhccCCh------HHHHHHHHHHHHhCCCCCEEEEec
Q 043063          208 FMKWVLTTWTD------DECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       208 ~~~~vlh~~~d------~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ++-.. +.+.+      -....+++.+++.|+|||.+++.-
T Consensus       156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~  195 (312)
T d1uira_         156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT  195 (312)
T ss_dssp             EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEeCC-CcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence            84321 11111      112578999999999999887754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.65  E-value=0.00039  Score=54.82  Aligned_cols=52  Identities=23%  Similarity=0.408  Sum_probs=38.9

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-CCceeEEeCCCCccCCcccEeeHh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-IPGVTHIGGDMFKSIPAADAIFMK  210 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-~~ri~~~~gd~~~~~p~~D~v~~~  210 (301)
                      +. ..+|||+|||+|              +.+|. +..++.+++ ..+++++.+|+.+.-...|+|++.
T Consensus        47 l~-Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~l~~~fD~Vi~N  114 (197)
T d1ne2a_          47 IG-GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADVSEISGKYDTWIMN  114 (197)
T ss_dssp             SB-TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGGCCCCEEEEEEC
T ss_pred             CC-CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHccccccEEEEehhhcCCcceEEEeC
Confidence            44 479999999996              46687 777777665 478999999986432336999875

>d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: SmtB repressor
species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]

Probab=96.57  E-value=0.00051  Score=47.75  Aligned_cols=58  Identities=19%  Similarity=0.152  Sum_probs=47.9

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .++.|+..|..++.|+.+||+.+|+    ....+.+.|+.|...|+|...+.+ ..-.|++++
T Consensus        24 ~Rl~Il~~L~~~~~~v~ela~~l~i----s~stvS~HL~~L~~aglV~~~r~G-~~~~Y~l~~   81 (98)
T d1r1ta_          24 NRLRLLSLLARSELCVGDLAQAIGV----SESAVSHQLRSLRNLRLVSYRKQG-RHVYYQLQD   81 (98)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESS
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCceEEEEEC-CEEEEEECh
Confidence            4678888998899999999999999    788999999999999999887522 122477664

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=96.54  E-value=0.00025  Score=60.42  Aligned_cols=84  Identities=19%  Similarity=0.193  Sum_probs=58.3

Q ss_pred             CcceEEeecCCce-------------eeeeh-hHHHhhCCC------CCceeEEeCCCCcc---CC----cccEeeHhhh
Q 043063          160 GVKRLVDVGGSAG-------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKS---IP----AADAIFMKWV  212 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~---~p----~~D~v~~~~v  212 (301)
                      ...+|||++||+|             +.+|. +..++.+++      .++++++.+|.++.   ++    ..|+|++---
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP  224 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDPP  224 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcCC
Confidence            4689999999995             56787 777776654      36899999998763   22    2599886321


Q ss_pred             hccCCh-------HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          213 LTTWTD-------DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       213 lh~~~d-------~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      -...+.       ..-.++++.+.+.|+|||.|+.+.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc  262 (318)
T d1wxxa2         225 AFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC  262 (318)
T ss_dssp             CSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            100011       1124789999999999999887755

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.49  E-value=0.00058  Score=56.81  Aligned_cols=83  Identities=19%  Similarity=0.260  Sum_probs=57.7

Q ss_pred             CCcceEEeecCCce--------------eeeeh-hHHHhhCCC----------------CCceeEEeCCCCccC---Ccc
Q 043063          159 KGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS----------------IPGVTHIGGDMFKSI---PAA  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~----------------~~ri~~~~gd~~~~~---p~~  204 (301)
                      .++.+||.||||.|              +++|+ |.|++.+++                .+|++++.+|.+.-+   ...
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            45789999999985              45677 888877642                479999999987542   235


Q ss_pred             cEeeHhhhhccCChHH---HHHHHHHHHHhCCCCCEEEEec
Q 043063          205 DAIFMKWVLTTWTDDE---CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~---~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      |+|++-.. ...+...   ...+++.+++.|+|||.+++.-
T Consensus       151 DvIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~  190 (276)
T d1mjfa_         151 DVIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA  190 (276)
T ss_dssp             EEEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence            99875322 2221111   2478999999999999887654

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.00061  Score=54.64  Aligned_cols=82  Identities=13%  Similarity=0.263  Sum_probs=58.2

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCC-------CCCceeEEeCCCCccC--------Cc-ccE
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAP-------SIPGVTHIGGDMFKSI--------PA-ADA  206 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~-------~~~ri~~~~gd~~~~~--------p~-~D~  206 (301)
                      +.++||+||+|+|                +.+|. |+..+.|+       ..++|+++.||..+.+        +. .|+
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~  138 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV  138 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence            5789999999995                34565 55554443       3589999999986532        11 487


Q ss_pred             eeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccC
Q 043063          207 IFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLP  246 (301)
Q Consensus       207 v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~  246 (301)
                      |++-     .+.+.-...+..+.+.|+|||.+++-+....
T Consensus       139 ifiD-----~dk~~y~~~~~~~~~lL~~GGvii~Dn~l~~  173 (219)
T d2avda1         139 AVVD-----ADKENCSAYYERCLQLLRPGGILAVLRVLWR  173 (219)
T ss_dssp             EEEC-----SCSTTHHHHHHHHHHHEEEEEEEEEECCSGG
T ss_pred             EEEe-----CCHHHHHHHHHHHHHHhcCCcEEEEeCCccc
Confidence            7764     2333456788889999999998888766554

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.39  E-value=0.0005  Score=57.67  Aligned_cols=85  Identities=19%  Similarity=0.235  Sum_probs=58.7

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~  208 (301)
                      .++++||-||||.|               +++|+ |.|++.+++          .+|++++.+|.++-+   +. .|+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            35789999999996               35677 888877654          479999999998652   22 49988


Q ss_pred             HhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +-..-..-...   -...+++.+++.|+|||.+++.-.
T Consensus       168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~  205 (295)
T d1inla_         168 IDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSAETE  205 (295)
T ss_dssp             EEC----------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence            64221110110   125889999999999998887643

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0072  Score=49.15  Aligned_cols=58  Identities=10%  Similarity=0.027  Sum_probs=38.9

Q ss_pred             CcceEEeecCCce---------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc----C---Cc--ccEe
Q 043063          160 GVKRLVDVGGSAG---------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS----I---PA--ADAI  207 (301)
Q Consensus       160 ~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~----~---p~--~D~v  207 (301)
                      ...++||||||+|               ++.|. +..++.|++       .+|+.++..+....    +   ..  .|+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            4568999999995               56787 777777654       47899887654433    1   12  4999


Q ss_pred             eHhhhhccCC
Q 043063          208 FMKWVLTTWT  217 (301)
Q Consensus       208 ~~~~vlh~~~  217 (301)
                      ++.--.+.-.
T Consensus       141 vsNPPY~~~~  150 (250)
T d2h00a1         141 MCNPPFFANQ  150 (250)
T ss_dssp             EECCCCC---
T ss_pred             EecCcccccc
Confidence            8887765433

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.29  E-value=0.0012  Score=55.28  Aligned_cols=84  Identities=19%  Similarity=0.215  Sum_probs=59.8

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc--ccEe
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA--ADAI  207 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~--~D~v  207 (301)
                      .++++||-||+|.|               +++|+ |.|++.+++          .+|++++.+|.++-   .++  .|+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            46789999999996               45677 888877754          48999999998754   333  4988


Q ss_pred             eHhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          208 FMKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       208 ~~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +.-.. ......   -...+++.+++.|+|||.+++.-.
T Consensus       159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~  196 (290)
T d1xj5a_         159 IVDSS-DPIGPAKELFEKPFFQSVARALRPGGVVCTQAE  196 (290)
T ss_dssp             EECCC-CTTSGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred             EEcCC-CCCCcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence            85221 111111   135789999999999999888754

>d1r1ua_ a.4.5.5 (A:) Metal-sensing transcriptional repressor CzrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Metal-sensing transcriptional repressor CzrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.27  E-value=0.00055  Score=47.13  Aligned_cols=58  Identities=19%  Similarity=0.170  Sum_probs=48.1

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .++.|+..|..++.++.||++.+|+    ....+.+-|+.|...|+|...+.+ ..-.|+++.
T Consensus        19 ~Rl~Il~~L~~~~~~v~el~~~l~~----s~~~vS~HL~~L~~~glv~~~r~G-~~~~Y~l~~   76 (94)
T d1r1ua_          19 NRIRIMELLSVSEASVGHISHQLNL----SQSNVSHQLKLLKSVHLVKAKRQG-QSMIYSLDD   76 (94)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEESS
T ss_pred             HHHHHHHHHHcCCccHHHHHHHHCC----CHHHHHHHHHHHHHCCceEEEEEC-CEEEEEECc
Confidence            4677888898899999999999999    688999999999999999987522 112487774

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.27  E-value=0.0011  Score=54.96  Aligned_cols=83  Identities=20%  Similarity=0.179  Sum_probs=58.5

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~-~D~v~  208 (301)
                      ..+.+||-||+|.|               +++|+ |.|++.+++          .+|++++.+|.+.-   .+. .|+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            45689999999996               45677 888777643          47999999998764   222 59887


Q ss_pred             HhhhhccCChH---HHHHHHHHHHHhCCCCCEEEEec
Q 043063          209 MKWVLTTWTDD---ECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       209 ~~~vlh~~~d~---~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      .-..= .....   -...+.+.+++.|+|||.++..-
T Consensus       154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~  189 (274)
T d1iy9a_         154 VDSTE-PVGPAVNLFTKGFYAGIAKALKEDGIFVAQT  189 (274)
T ss_dssp             ESCSS-CCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred             EcCCC-CCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence            54321 11110   13478999999999999888764

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0011  Score=55.27  Aligned_cols=84  Identities=17%  Similarity=0.199  Sum_probs=58.1

Q ss_pred             CCCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCcc---CCc-ccEe
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKS---IPA-ADAI  207 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~---~p~-~D~v  207 (301)
                      -..+++||-||||.|               +++|+ |.|++.+++          .+|++++.+|.++-   .+. .|+|
T Consensus        76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (285)
T d2o07a1          76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI  155 (285)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred             CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence            346789999999996               45687 888887754          48999999998764   233 5988


Q ss_pred             eHhhhhccCChHH---HHHHHHHHHHhCCCCCEEEEec
Q 043063          208 FMKWVLTTWTDDE---CKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       208 ~~~~vlh~~~d~~---~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      ++-. .+......   ..++++.+++.|+|||.+++.-
T Consensus       156 i~D~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~  192 (285)
T d2o07a1         156 ITDS-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG  192 (285)
T ss_dssp             EEEC-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEcC-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence            8642 22221111   2367999999999999888764

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=96.21  E-value=0.0004  Score=58.99  Aligned_cols=85  Identities=13%  Similarity=0.150  Sum_probs=57.8

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC------c-ccEe
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP------A-ADAI  207 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p------~-~D~v  207 (301)
                      .....+|||+.||+|              +.+|. +..++.+++        ..+++++.+|.++.++      . .|+|
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~I  221 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII  221 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEE
Confidence            445789999999995              45687 555555432        3689999999986422      2 4999


Q ss_pred             eHh--------hhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          208 FMK--------WVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       208 ~~~--------~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ++-        .-++..- ..-.++++.+.+.|+|||.|+++-+
T Consensus       222 i~DPP~f~~~~~~~~~~~-~~~~~L~~~a~~ll~pgG~l~~~sc  264 (317)
T d2b78a2         222 IIDPPSFARNKKEVFSVS-KDYHKLIRQGLEILSENGLIIASTN  264 (317)
T ss_dssp             EECCCCC-----CCCCHH-HHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEcChhhccchhHHHHHH-HHHHHHHHHHHHHcCCCCEEEEEeC
Confidence            862        1111111 1235799999999999998887654

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.05  E-value=0.0031  Score=51.21  Aligned_cols=77  Identities=14%  Similarity=0.253  Sum_probs=53.6

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC----CCceeEEeCCCCcc-CCc-ccEe
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS----IPGVTHIGGDMFKS-IPA-ADAI  207 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~----~~ri~~~~gd~~~~-~p~-~D~v  207 (301)
                      ...+++..+ .++..+||+||||+|             +.+|. +..++.+++    .++++++.+|+.+- ++. .+..
T Consensus        18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~~~   96 (245)
T d1yuba_          18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRYK   96 (245)
T ss_dssp             HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEEE
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhhhhhhhccchhhhhhhhhccccccceeee
Confidence            455666664 778899999999997             34565 444554443    37899999999874 665 4666


Q ss_pred             eHhhhhccCChHHHHHHH
Q 043063          208 FMKWVLTTWTDDECKLIM  225 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL  225 (301)
                      ++++.-++++-+-..++|
T Consensus        97 vv~NLPY~Ist~il~~~l  114 (245)
T d1yuba_          97 IVGNIPYHLSTQIIKKVV  114 (245)
T ss_dssp             EEEECCSSSCHHHHHHHH
T ss_pred             EeeeeehhhhHHHHHHHh
Confidence            778887788875444443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.02  E-value=0.0015  Score=54.99  Aligned_cols=88  Identities=16%  Similarity=0.223  Sum_probs=59.0

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--------CCceeEEeCCCCccCC-------cccEee
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--------IPGVTHIGGDMFKSIP-------AADAIF  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--------~~ri~~~~gd~~~~~p-------~~D~v~  208 (301)
                      .....+|||+.||+|             +.+|. +..++.|++        ..+++|+.+|.++.+.       ..|+|+
T Consensus       130 ~~~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         130 ADRPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SSSCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             ccCCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            345679999999995             56787 667666653        2479999999986421       249998


Q ss_pred             Hh---hhhc----cCC-hHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          209 MK---WVLT----TWT-DDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       209 ~~---~vlh----~~~-d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +-   ..-.    .|. .+....+++.+.+.|+|||.++++....
T Consensus       210 lDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~s  254 (309)
T d2igta1         210 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAYS  254 (309)
T ss_dssp             ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEECC
T ss_pred             ECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecCC
Confidence            72   1110    111 2234567788899999999777666544

>d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Hypothetical protein PH1061
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.01  E-value=0.00064  Score=47.31  Aligned_cols=62  Identities=21%  Similarity=0.182  Sum_probs=50.3

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSL   74 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l   74 (301)
                      ++.|+..|.. |+.|+.+||+.+++    .+..+.+.|+.|...|++++.... .+.   .|++|+.++.+
T Consensus        18 r~~IL~~L~~~~~~~~~eLa~~l~i----s~~~vs~~l~~L~~~glV~~~~~~-~d~r~~~~~LT~~G~~~   83 (100)
T d1ub9a_          18 RLGIMIFLLPRRKAPFSQIQKVLDL----TPGNLDSHIRVLERNGLVKTYKVI-ADRPRTVVEITDFGMEE   83 (100)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEEC-SSSCEEEEEECHHHHHH
T ss_pred             HHHHHHHhccCCCeeHHHHHHHHhh----ccccccHHHHHHhhhceeEEEEcC-cCCccccccCCHHHHHH
Confidence            5778888864 89999999999999    799999999999999999866321 112   49999988643

>d2hoea1 a.4.5.63 (A:10-71) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.99  E-value=0.00098  Score=41.98  Aligned_cols=44  Identities=14%  Similarity=0.282  Sum_probs=39.4

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .|++.|..+|+|..|||+.+|+    ...-+.++++.|...|++.+.+
T Consensus         3 ~Il~~i~~~pisr~eLa~~~gl----s~~TVs~~v~~L~~~GlV~e~~   46 (62)
T d2hoea1           3 RILKRIMKSPVSRVELAEELGL----TKTTVGEIAKIFLEKGIVVEEK   46 (62)
T ss_dssp             CSHHHHHHSCBCHHHHHHHHTC----CHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHHCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEECC
Confidence            4667777789999999999999    7889999999999999999873

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.97  E-value=0.0011  Score=55.83  Aligned_cols=84  Identities=20%  Similarity=0.170  Sum_probs=56.4

Q ss_pred             CCcceEEeecCCce---------------eeeeh-hHHHhhCCC----------CCceeEEeCCCCccC---Cc-ccEee
Q 043063          159 KGVKRLVDVGGSAG---------------INFDL-PEVVAEAPS----------IPGVTHIGGDMFKSI---PA-ADAIF  208 (301)
Q Consensus       159 ~~~~~vlDvGgG~g---------------~~~Dl-p~v~~~a~~----------~~ri~~~~gd~~~~~---p~-~D~v~  208 (301)
                      ..+++||-||||.|               +++|+ |.|++.+++          .+|++++.+|.++-+   +. .|+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            35789999999996               45676 788777653          389999999988642   22 59888


Q ss_pred             HhhhhccCCh---HHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MKWVLTTWTD---DECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vlh~~~d---~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      +-..- ....   --...+++.+++.|+|||.++..-.
T Consensus       185 ~D~~d-p~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~  221 (312)
T d2b2ca1         185 TDSSD-PVGPAESLFGQSYYELLRDALKEDGILSSQGE  221 (312)
T ss_dssp             ECCC--------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EcCCC-CCCcchhhhhHHHHHHHHhhcCCCcEEEEecC
Confidence            53221 1111   1135779999999999999887743

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=95.94  E-value=0.0029  Score=52.15  Aligned_cols=50  Identities=18%  Similarity=0.327  Sum_probs=37.2

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCCc----ccEeeHh
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIPA----ADAIFMK  210 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p~----~D~v~~~  210 (301)
                      ..+++|+|||+|              +..|. |..++.|++       .+++.+..+|+++..+.    .|+|+++
T Consensus       111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN  186 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN  186 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred             ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence            468999999996              45687 777666653       36899999999887442    4888765

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=95.92  E-value=0.0043  Score=50.03  Aligned_cols=77  Identities=8%  Similarity=0.203  Sum_probs=50.7

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhC----CCCCceeEEeCCCCcc-CCcc-cEe
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEA----PSIPGVTHIGGDMFKS-IPAA-DAI  207 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a----~~~~ri~~~~gd~~~~-~p~~-D~v  207 (301)
                      ...+++..+ .+...+||+||||+|             +.+|. +..++..    ...++++++.+|+++- +|.. ...
T Consensus        10 ~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~~~~   88 (235)
T d1qama_          10 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQSYK   88 (235)
T ss_dssp             HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCCCE
T ss_pred             HHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccccce
Confidence            456777775 778899999999997             35555 4444333    3468999999999975 5553 444


Q ss_pred             eHhhhhccCChHHHHHHHHHHH
Q 043063          208 FMKWVLTTWTDDECKLIMENCY  229 (301)
Q Consensus       208 ~~~~vlh~~~d~~~~~iL~~~~  229 (301)
                      +.++.-++.+-    .+|.++.
T Consensus        89 vv~NLPYnIss----~il~~ll  106 (235)
T d1qama_          89 IFGNIPYNIST----DIIRKIV  106 (235)
T ss_dssp             EEEECCGGGHH----HHHHHHH
T ss_pred             eeeeehhhhhH----HHHHHHH
Confidence            44555544444    4555554

>d1biaa1 a.4.5.1 (A:1-63) Biotin repressor, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Biotin repressor, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0027  Score=40.02  Aligned_cols=55  Identities=20%  Similarity=0.113  Sum_probs=44.2

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecC
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLT   68 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t   68 (301)
                      .++.|++.|.+ +..|.+|||+.+|+    ....+.+-+..|...|+..+..   .+..|++.
T Consensus         6 ~~~~iL~~L~~~~~~s~~eLa~~l~v----S~~ti~r~i~~L~~~G~~I~~~---~g~GY~L~   61 (63)
T d1biaa1           6 VPLKLIALLANGEFHSGEQLGETLGM----SRAAINKHIQTLRDWGVDVFTV---PGKGYSLP   61 (63)
T ss_dssp             HHHHHHHHHTTSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHTTCCCEEE---TTTEEECS
T ss_pred             HHHHHHHHHHHCCcCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCcEEEe---CCCeEEeC
Confidence            45678888886 56899999999999    6999999999999999854442   23468875

>d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Transcriptional regulator VC2007 N-terminal domain
species: Vibrio cholerae [TaxId: 666]

Probab=95.72  E-value=0.0017  Score=42.03  Aligned_cols=43  Identities=14%  Similarity=0.144  Sum_probs=38.7

Q ss_pred             ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .|++.|.. +++|..|||+.+|+    .+..+.+.++.|...|++.+.
T Consensus        10 ~Il~~l~~~g~~sr~eLa~~~gl----S~~Tv~~~l~~L~~~Glv~e~   53 (71)
T d1z05a1          10 RVYKLIDQKGPISRIDLSKESEL----APASITKITRELIDAHLIHET   53 (71)
T ss_dssp             HHHHHHHHHCSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEe
Confidence            46777765 89999999999999    799999999999999999876

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=95.65  E-value=0.0024  Score=51.28  Aligned_cols=81  Identities=15%  Similarity=0.184  Sum_probs=57.4

Q ss_pred             CcceEEeecCCce----------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccCC----------ccc
Q 043063          160 GVKRLVDVGGSAG----------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSIP----------AAD  205 (301)
Q Consensus       160 ~~~~vlDvGgG~g----------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~p----------~~D  205 (301)
                      +.++||+||+++|                +.+|. |+.++.|++       .++|+++.||..+-+|          ..|
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD  138 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD  138 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence            5789999999995                34565 554444442       5799999999865422          148


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      +|++-.     ....-...++.+.+.|+|||.+++-+...
T Consensus       139 ~iFiDa-----~k~~y~~~~e~~~~ll~~gGiii~DNvl~  173 (227)
T d1susa1         139 FIFVDA-----DKDNYLNYHKRLIDLVKVGGVIGYDNTLW  173 (227)
T ss_dssp             EEEECS-----CSTTHHHHHHHHHHHBCTTCCEEEETTTG
T ss_pred             EEEecc-----chhhhHHHHHHHHhhcCCCcEEEEccCCC
Confidence            877642     33345788999999999999887766654

>d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Ta1064 (RFK), N-terminal domain
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=95.49  E-value=0.0046  Score=41.40  Aligned_cols=53  Identities=17%  Similarity=0.193  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      +++|..+||+.+++    .+..+.++|+.|...|++.+..++ ..-.|.+|+.+..+.
T Consensus        20 ~~lt~~eLa~~l~i----~~~~vs~~l~~Le~~GlV~r~~D~-R~~~i~LT~~G~~~l   72 (85)
T d3ctaa1          20 AYLTSSKLADMLGI----SQQSASRIIIDLEKNGYITRTVTK-RGQILNITEKGLDVL   72 (85)
T ss_dssp             EECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEECHHHHHHH
T ss_pred             CCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCeeeeccc-ccccceECHHHHHHH
Confidence            68999999999999    799999999999999999987411 122488898886543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.0014  Score=50.31  Aligned_cols=80  Identities=16%  Similarity=0.163  Sum_probs=46.9

Q ss_pred             CCCcceEEeecCCce-------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCcc---CC--cccEeeHhh
Q 043063          158 FKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKS---IP--AADAIFMKW  211 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~---~p--~~D~v~~~~  211 (301)
                      .....+|||+|||+|             +.+|. |.+++.+++       .+++....+|.+..   .+  ..|+|++-=
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DP  118 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP  118 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred             ccCCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEcc
Confidence            345679999999995             45687 777766543       35666666655432   12  259998742


Q ss_pred             hhccCChHHHHHHHHHH--HHhCCCCCEEEEe
Q 043063          212 VLTTWTDDECKLIMENC--YKAIPAGGKLIAC  241 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~--~~aL~pgg~lli~  241 (301)
                      -.+ .+..   +++..+  ...|+|||.+++.
T Consensus       119 PY~-~~~~---~~l~~l~~~~ll~~~g~ivie  146 (171)
T d1ws6a1         119 PYA-MDLA---ALFGELLASGLVEAGGLYVLQ  146 (171)
T ss_dssp             CTT-SCTT---HHHHHHHHHTCEEEEEEEEEE
T ss_pred             ccc-cCHH---HHHHHHHHcCCcCCCeEEEEE
Confidence            221 2221   233333  2468899876654

>d2hzta1 a.4.5.69 (A:4-98) Putative transcriptional regulator YtcD {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtcD
species: Bacillus subtilis [TaxId: 1423]

Probab=95.41  E-value=0.0067  Score=41.48  Aligned_cols=61  Identities=23%  Similarity=0.175  Sum_probs=48.4

Q ss_pred             cccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCC--CeEecChhchhhh
Q 043063           11 KKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGE--RKYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~s~~l~   75 (301)
                      |+..|..|+....||.+.+ |+    .+.-|.+=|+.|...|++++......+  -.|++|+.++.|.
T Consensus        16 Il~~L~~g~~rF~el~~~l~gi----s~~~Ls~rLk~Le~~glv~r~~~~~~p~~veY~LT~~G~~L~   79 (95)
T d2hzta1          16 ILCHLTHGKKRTSELKRLMPNI----TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE   79 (95)
T ss_dssp             HHHHHTTCCBCHHHHHHHCTTS----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred             HHHHHHcCCCCHHHHHHHhhcC----ChhHHHHHHHHHHHhHHHhheeccccccchhhhhhhhHHHHH
Confidence            5556767999999999997 89    799999999999999999977421111  1399999887765

>d1lvaa3 a.4.5.35 (A:511-574) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=95.36  E-value=0.0097  Score=37.41  Aligned_cols=42  Identities=21%  Similarity=0.298  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL   67 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~   67 (301)
                      .|-++.|||+.+|+    ++..++.+|+.|+..|.+.+.    .++.|-+
T Consensus        22 ~PP~vrdl~~~l~~----~e~~~~~lL~~l~~~G~lvkI----~~d~yfh   63 (64)
T d1lvaa3          22 QPPSFKEVAGSFNL----DPSELEELLHYLVREGVLVKI----NDEFYWH   63 (64)
T ss_dssp             SCCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEES----SSSBEEE
T ss_pred             CCCcHHHHHHHhCC----CHHHHHHHHHHHHHCCCEEEe----ccccccc
Confidence            58899999999999    899999999999999999998    4677743

>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Archaeal DNA-binding protein
domain: Sso10a (SSO10449)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.36  E-value=0.0058  Score=41.28  Aligned_cols=57  Identities=14%  Similarity=0.216  Sum_probs=47.6

Q ss_pred             ccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhhc
Q 043063           10 GKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLVT   76 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~~   76 (301)
                      +|++.+.+| .+...|...+++    +...+...|..|+..|+++..     ++.|++|+.+..|..
T Consensus        10 DIL~~~~~g-~~kT~i~~~aNL----s~~~~~kyl~~L~~~GLI~~~-----~~~Y~iT~kG~~~L~   66 (90)
T d1r7ja_          10 AILEACKSG-SPKTRIMYGANL----SYALTGRYIKMLMDLEIIRQE-----GKQYMLTKKGEELLE   66 (90)
T ss_dssp             HHHHHHTTC-BCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE-----TTEEEECHHHHHHHH
T ss_pred             HHHHHHhCC-CCccHHHHHcCC----CHHHHHHHHHHHHHCCCeeec-----CCEEEECccHHHHHH
Confidence            344555544 478999999999    899999999999999999887     789999999976653

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.33  E-value=0.007  Score=47.47  Aligned_cols=55  Identities=20%  Similarity=0.211  Sum_probs=38.2

Q ss_pred             CCCcceEEeecCCce--------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCcccEeeHhhhh
Q 043063          158 FKGVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPAADAIFMKWVL  213 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~~D~v~~~~vl  213 (301)
                      ++ ..+|||+|||+|              +.+|. |..++.+++     ..++++..+|....-...|+|++.--.
T Consensus        45 l~-g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~  119 (201)
T d1wy7a1          45 IE-GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPF  119 (201)
T ss_dssp             ST-TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCC
T ss_pred             CC-CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCcc
Confidence            44 468999999996              46787 666665543     357888988876543336998876543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=95.29  E-value=0.14  Score=43.29  Aligned_cols=106  Identities=11%  Similarity=0.168  Sum_probs=63.9

Q ss_pred             eeEEeCCCCcc-CCcc--cEeeHhhhhccCCh-------------------H------------HHHHHHHHHHHhCCCC
Q 043063          190 VTHIGGDMFKS-IPAA--DAIFMKWVLTTWTD-------------------D------------ECKLIMENCYKAIPAG  235 (301)
Q Consensus       190 i~~~~gd~~~~-~p~~--D~v~~~~vlh~~~d-------------------~------------~~~~iL~~~~~aL~pg  235 (301)
                      +.-++|.|+.. +|..  ++++.+..||-++.                   +            +-..+|+.=++-|.||
T Consensus       123 ~~gvpGSFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G  202 (359)
T d1m6ex_         123 INGVPGSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPG  202 (359)
T ss_dssp             EEEEESCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTT
T ss_pred             EEecCCchhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45588999987 8873  99999999986642                   1            2235777777789999


Q ss_pred             CEEEEeccccCCCCCCh----H--HhhhhhhccHHHHhhh--------hccccccCHHHHHHHHHhCC-CCceEE
Q 043063          236 GKLIACEPVLPDDSNES----Q--RTRALLEGDIFVMTIY--------RAKGKHMTEQEFKQLGFSAG-FPHLRL  295 (301)
Q Consensus       236 g~lli~e~~~~~~~~~~----~--~~~~~~~~d~~m~~~~--------~~~g~~rt~~e~~~~l~~aG-f~~~~~  295 (301)
                      |++++.-...++.....    .  ..-...+.|+...++.        ..--..+|.+|+++.+++.| |.+.++
T Consensus       203 G~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~  277 (359)
T d1m6ex_         203 GRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI  277 (359)
T ss_dssp             CEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred             cEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence            99999877665431110    0  0001122232222200        00122369999999999865 444443

>d1u2wa1 a.4.5.5 (A:12-119) Cadmium efflux system accessory protein CadC {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ArsR-like transcriptional regulators
domain: Cadmium efflux system accessory protein CadC
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.29  E-value=0.0029  Score=44.56  Aligned_cols=59  Identities=22%  Similarity=0.147  Sum_probs=46.9

Q ss_pred             cccccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063            7 RDGGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus         7 ~~lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      .++.|+..|. .++.|+.+|++.+|+    ....+.+-|+.|...|+|...+.| ..-.|++++.
T Consensus        32 ~Rl~Il~~L~~~~~~~v~ela~~l~~----s~s~vS~HL~~L~~aGlv~~~r~G-~~~~Y~l~~~   91 (108)
T d1u2wa1          32 NRAKITYALCQDEELCVCDIANILGV----TIANASHHLRTLYKQGVVNFRKEG-KLALYSLGDE   91 (108)
T ss_dssp             HHHHHHHHHHHSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-----CCEEEESCH
T ss_pred             HHHHHHHHHHhCCCccHHHHHHHHcc----ChhHHHHHHHHHHHCCeeEEEEEC-CEEEEEECHH
Confidence            4678888885 589999999999999    788999999999999999988522 2235777653

>d1z6ra1 a.4.5.63 (A:12-81) Mlc protein N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ROK associated domain
domain: Mlc protein N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.0039  Score=40.11  Aligned_cols=43  Identities=9%  Similarity=0.094  Sum_probs=38.6

Q ss_pred             ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .|+..|.. |+.|..+||+.+|+    .+..+.++++.|...|++.+.
T Consensus         9 ~Il~~i~~~g~~sr~eLa~~~gL----S~~Tvs~iv~~L~~~glv~e~   52 (70)
T d1z6ra1           9 AVYRLIDQLGPVSRIDLSRLAQL----APASITKIVHEMLEAHLVQEL   52 (70)
T ss_dssp             HHHHHHHSSCSCCHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEC
T ss_pred             HHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCEEee
Confidence            46777765 89999999999999    688999999999999999876

>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: ML2640-like
domain: Putative methyltransferase ML2640
species: Mycobacterium leprae [TaxId: 1769]

Probab=95.18  E-value=0.033  Score=46.28  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=61.4

Q ss_pred             CCcceEEeecCCc-----------e-ee--eehhHHHhhC---------CCCCceeEEeCCCCccCCc----------c-
Q 043063          159 KGVKRLVDVGGSA-----------G-IN--FDLPEVVAEA---------PSIPGVTHIGGDMFKSIPA----------A-  204 (301)
Q Consensus       159 ~~~~~vlDvGgG~-----------g-~~--~Dlp~v~~~a---------~~~~ri~~~~gd~~~~~p~----------~-  204 (301)
                      .+...||.+|||.           + .+  +|+|+|++.-         ....+..+++.|+..+++.          . 
T Consensus        88 ~g~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p  167 (297)
T d2uyoa1          88 DGIRQFVILASGLDSRAYRLDWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR  167 (297)
T ss_dssp             TTCCEEEEETCTTCCHHHHSCCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred             hCCCeEEEeCcccCChhhhcCCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence            3567788899999           2 23  4779988642         2246778888888754221          1 


Q ss_pred             cEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEe
Q 043063          205 DAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIAC  241 (301)
Q Consensus       205 D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~  241 (301)
                      -++++-.++++++.+++.++|+.+.+...||+.|++-
T Consensus       168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d  204 (297)
T d2uyoa1         168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVE  204 (297)
T ss_dssp             EEEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEE
Confidence            4677777899999999999999999999999887654

>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790 {Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PF1790-like
domain: Transcriptional regulatory protein PF1790
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.09  E-value=0.0028  Score=49.57  Aligned_cols=61  Identities=16%  Similarity=0.165  Sum_probs=48.7

Q ss_pred             ccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc---c-CCCeEecChhch
Q 043063            8 DGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF---G-GERKYSLTEIGK   72 (301)
Q Consensus         8 ~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~---~-~~~~y~~t~~s~   72 (301)
                      ++.|+..|..||.|+.+||+.+|+    .+..+++.|+.|...|+|+.....   | ....|+++..+.
T Consensus        17 R~~Il~~L~~~~~~~~ela~~l~~----s~~~v~~HL~~L~~~Glv~~~~~~~~~G~~~~~y~l~~~~~   81 (194)
T d2p4wa1          17 RRRILFLLTKRPYFVSELSRELGV----GQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMIKKGLR   81 (194)
T ss_dssp             HHHHHHHHHHSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEECTTEE
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeecCCCCceEEEEecccce
Confidence            456788888899999999999999    789999999999999999854321   1 112688888654

>d1ulya_ a.4.5.58 (A:) Hypothetical protein PH1932 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Hypothetical protein PH1932
domain: Hypothetical protein PH1932
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.06  E-value=0.0042  Score=48.27  Aligned_cols=61  Identities=15%  Similarity=0.066  Sum_probs=48.4

Q ss_pred             cccccccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC----CeEecChhc
Q 043063            7 RDGGKKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE----RKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~----~~y~~t~~s   71 (301)
                      .++.|++.|..+|.|+.|||+.+|+    .+..+.+.|+.|...|+|.....+...    -.|.+|+.+
T Consensus        20 ~R~~Il~~L~~~~~s~~ela~~lg~----s~~~v~~hl~~L~~~glv~~~~~~~~~g~~~k~y~~~~~~   84 (190)
T d1ulya_          20 TRRKILKLLRNKEMTISQLSEILGK----TPQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADV   84 (190)
T ss_dssp             HHHHHHHHHTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSE
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEEEEeeccCCcceEEEEEcccc
Confidence            3567889998899999999999999    788999999999999999754321111    248888654

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=95.05  E-value=0.0039  Score=48.24  Aligned_cols=78  Identities=5%  Similarity=0.029  Sum_probs=51.1

Q ss_pred             cceEEeecCCce--------------eeeeh-hHHHhhCCC------CCceeEEeCCCCccCC----cccEeeHhhhhcc
Q 043063          161 VKRLVDVGGSAG--------------INFDL-PEVVAEAPS------IPGVTHIGGDMFKSIP----AADAIFMKWVLTT  215 (301)
Q Consensus       161 ~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~------~~ri~~~~gd~~~~~p----~~D~v~~~~vlh~  215 (301)
                      ..+|||++||+|              +.+|. +..++.+++      ..+++++.+|.++.+.    ..|+|++---.  
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY--  121 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF--  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS--
T ss_pred             hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCcc--
Confidence            468999999995              45576 555554432      4678999999876422    25999886432  


Q ss_pred             CChHHHHHHHHHHHH--hCCCCCEEEEe
Q 043063          216 WTDDECKLIMENCYK--AIPAGGKLIAC  241 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~--aL~pgg~lli~  241 (301)
                       ......+++..+.+  .|+|+|.+++-
T Consensus       122 -~~~~~~~~l~~l~~~~~L~~~~iIiiE  148 (183)
T d2fpoa1         122 -RRGLLEETINLLEDNGWLADEALIYVE  148 (183)
T ss_dssp             -STTTHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             -ccchHHHHHHHHHHCCCCCCCeEEEEE
Confidence             23334466666655  48888876663

>d1xd7a_ a.4.5.55 (A:) Hypothetical protein ywnA {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein ywnA
species: Bacillus subtilis [TaxId: 1423]

Probab=95.05  E-value=0.014  Score=42.10  Aligned_cols=47  Identities=15%  Similarity=0.220  Sum_probs=39.1

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      +++.|.++||+.+++    ++..++++|+.|...|+|.-.+  |.+|.| ++.-
T Consensus        16 ~~~~ss~~IA~~~~~----~~~~v~kIl~~L~~aglV~s~r--G~~GGy-Lar~   62 (127)
T d1xd7a_          16 DEKTSSEIIADSVNT----NPVVVRRMISLLKKADILTSRA--GVPGAS-LKKD   62 (127)
T ss_dssp             CSCCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEECCS--SSSSCE-ESSC
T ss_pred             CCCCCHHHHHHHhCc----CHHHHHHHHHHHHHhCcccccC--CCCCcc-ccCC
Confidence            368999999999999    8999999999999999998764  234456 6653

>d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator Rrf2
domain: Hypothetical protein BC1842
species: Bacillus cereus [TaxId: 1396]

Probab=94.67  E-value=0.012  Score=43.00  Aligned_cols=45  Identities=13%  Similarity=0.223  Sum_probs=38.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      .+.|.++||+.+++    ++..++++|..|...|+|.-.+   +.|.|.+..
T Consensus        22 ~~vss~~IA~~~~i----~~~~l~kil~~L~~aGlv~S~r---G~GG~~L~~   66 (138)
T d1ylfa1          22 SLCTSDYMAESVNT----NPVVIRKIMSYLKQAGFVYVNR---GPGGAGLLK   66 (138)
T ss_dssp             GGCCHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC------CCEEESS
T ss_pred             CcCcHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeec---CCCCceecC
Confidence            57899999999999    8999999999999999998875   346788765

>d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Biotin repressor-like
domain: Putative transcriptional regulator TM1602, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.65  E-value=0.018  Score=36.25  Aligned_cols=52  Identities=17%  Similarity=0.243  Sum_probs=42.1

Q ss_pred             cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcc-eeccccccCCCeEecCh
Q 043063            9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGV-FSEHREFGGERKYSLTE   69 (301)
Q Consensus         9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~-l~~~~~~~~~~~y~~t~   69 (301)
                      ..|++.|.  ++++|..+||+.+++    ..+-++|-+..|...|+ +...     .+.|++.+
T Consensus        10 ~~Il~~L~~~~~~vs~~~La~~l~V----S~~TI~rdi~~L~~~G~~I~~~-----~gGY~L~~   64 (65)
T d1j5ya1          10 KSIVRILERSKEPVSGAQLAEELSV----SRQVIVQDIAYLRSLGYNIVAT-----PRGYVLAG   64 (65)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHHTS----CHHHHHHHHHHHHHHTCCCEEE-----TTEEECCT
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHCCCeEEEe-----CCCEEeCC
Confidence            34667774  367999999999999    69999999999999998 5554     56898864

>d2fswa1 a.4.5.69 (A:3-104) Hypothetical protein PG0823 {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PG0823
species: Porphyromonas gingivalis [TaxId: 837]

Probab=94.44  E-value=0.01  Score=41.14  Aligned_cols=62  Identities=16%  Similarity=0.149  Sum_probs=48.6

Q ss_pred             ccccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCC--CeEecChhchhhh
Q 043063           10 GKKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGE--RKYSLTEIGKSLV   75 (301)
Q Consensus        10 glf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~s~~l~   75 (301)
                      -|+..|..|+....||.+.+ |+    .+.-|.+=|+.|...|+|.+......+  -.|++|+.+..|.
T Consensus        24 ~Il~~L~~g~~rF~el~~~l~gI----s~~~Ls~rLkeL~~~glv~r~~~~~~p~~veY~LT~~G~~L~   88 (102)
T d2fswa1          24 LIIFQINRRIIRYGELKRAIPGI----SEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVL   88 (102)
T ss_dssp             HHHHHHTTSCEEHHHHHHHSTTC----CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTH
T ss_pred             HHHHHHccCCCCHHHHHhhCccc----chhHHHHHHHHHHHCCceeecccCCCCCeehhhhhHhHHHHH
Confidence            35556777999999999997 89    789999999999999999886321111  1499999987765

>d2gxba1 a.4.5.19 (A:140-198) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.19  E-value=0.025  Score=34.12  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=41.7

Q ss_pred             cccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063            9 GGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL   67 (301)
Q Consensus         9 lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~   67 (301)
                      ++.|..|.+ ...|+.+||.++++    ....+.++|..|...|-+.+..  +.+-.|++
T Consensus         5 l~~l~~lg~~~~~tA~~LA~kl~v----pKk~iNr~LYsL~~kgkl~k~~--gtPPlWr~   58 (59)
T d2gxba1           5 LKFLEELGEGKATTAHDLSGKLGT----PKKEINRVLYSLAKKGKLQKEA--GTPPLWKI   58 (59)
T ss_dssp             HHHHHHHCTTCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC--SSSCEEEE
T ss_pred             HHHHHhcCCccchhHHHHHHHhCC----cHHHHHHHHHHHHHccchhhcC--CCCCCccc
Confidence            345667765 46899999999999    7999999999999999999873  22334554

>d1yyva1 a.4.5.69 (A:9-122) Putative transcriptional regulator YtfH {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Putative transcriptional regulator YtfH
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.05  E-value=0.01  Score=42.04  Aligned_cols=61  Identities=18%  Similarity=0.137  Sum_probs=48.4

Q ss_pred             cccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCC--CeEecChhchhhh
Q 043063           11 KKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGE--RKYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~s~~l~   75 (301)
                      |+-.|..|+....||.+.+ |+    .++-|.+=|+.|...|+|.+......+  -.|.+|+.++.|.
T Consensus        29 Il~~L~~g~~RF~el~~~l~gi----s~~~Ls~rL~~Le~~glv~R~~~~~~p~~veY~LT~~G~~L~   92 (114)
T d1yyva1          29 ILVALRDGTHRFSDLRRKMGGV----SEKMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVS   92 (114)
T ss_dssp             HHHHGGGCCEEHHHHHHHSTTC----CHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHcccc----chhHHHHHHHHHHHHHHHhhcccCCCCchhHhHhhHhHHHHH
Confidence            4555667899999999999 78    688999999999999999977421111  2499999998776

>d1sfxa_ a.4.5.50 (A:) Hypothetical protein AF2008 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical protein AF2008
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.93  E-value=0.0071  Score=42.44  Aligned_cols=45  Identities=18%  Similarity=0.149  Sum_probs=38.8

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      +..++..|.. |+.|+.+||+.+|+    +...+.+.|+.|...|++.+.
T Consensus        22 e~~v~~~L~~~g~~t~~eia~~~~i----~~~~v~~~l~~L~~~GlV~r~   67 (109)
T d1sfxa_          22 DVRIYSLLLERGGMRVSEIARELDL----SARFVRDRLKVLLKRGFVRRE   67 (109)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHhcCCCCHHHHHHHhCC----CcchHHHHHHHHHhCCCEEEE
Confidence            3445566654 89999999999999    899999999999999999865

>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator TM0816
species: Thermotoga maritima [TaxId: 2336]

Probab=93.58  E-value=0.013  Score=42.78  Aligned_cols=64  Identities=17%  Similarity=0.138  Sum_probs=49.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~   76 (301)
                      ++-++..|.. ++.|..+||+.+++    ++..+.+.++.|+..|++.+.+.. .+   -...+|+.++.+..
T Consensus        34 q~~iL~~l~~~~~~t~~~La~~l~i----~~~~vs~~v~~L~~~gli~r~~~~-~D~R~~~l~lT~~G~~~~~  101 (140)
T d2etha1          34 ELYAFLYVALFGPKKMKEIAEFLST----TKSNVTNVVDSLEKRGLVVREMDP-VDRRTYRVVLTEKGKEIFG  101 (140)
T ss_dssp             HHHHHHHHHHHCCBCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEEECT-TTSSCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCCcCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeeecc-cccchhhhhcCHHHHHHHH
Confidence            3445566654 78999999999999    899999999999999999977522 12   25888988876543

>d1z7ua1 a.4.5.69 (A:1-108) Hypothetical protein EF0647 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein EF0647
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.40  E-value=0.013  Score=40.97  Aligned_cols=61  Identities=16%  Similarity=0.116  Sum_probs=47.9

Q ss_pred             cccccCCCCCCHHHHHHHh-CCCCCCCcccHHHHHHHHhcCcceeccccccCC--CeEecChhchhhh
Q 043063           11 KKGRLANTPLSASQILTRI-LPSGGGDAENLQRILRLLTNYGVFSEHREFGGE--RKYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~-~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~--~~y~~t~~s~~l~   75 (301)
                      |+..|..|+....||.+.+ |+    .+.-|.+=|+.|...|+|.+......+  -.|.+|+.++.|.
T Consensus        24 Il~~L~~g~~RF~el~~~l~gI----S~~~Ls~rLk~L~~~glv~R~~~~~~p~~veY~LT~~G~~L~   87 (108)
T d1z7ua1          24 LMDELFQGTKRNGELMRALDGI----TQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYALY   87 (108)
T ss_dssp             HHHHHHHSCBCHHHHHHHSTTC----CHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHCcCC----ChhHHHHHHHHHHHCCcceeeccCCCcceehhhhchhHHHHH
Confidence            4555656899999999997 79    799999999999999999976311011  1399999998776

>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator OEOE1854
species: Oenococcus oeni [TaxId: 1247]

Probab=93.35  E-value=0.03  Score=40.45  Aligned_cols=63  Identities=10%  Similarity=0.026  Sum_probs=47.4

Q ss_pred             cccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            9 GGKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      +.++..|.   +++.|..+||+.+++    +...+.++++.|+..|++.+....  +..-.+.+|+.++.+.
T Consensus        32 ~~vL~~l~~~~~~~it~~ela~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~   99 (135)
T d3broa1          32 MTIIDYLSRNKNKEVLQRDLESEFSI----KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLE   99 (135)
T ss_dssp             HHHHHHHHHTTTSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTH
T ss_pred             HHHHHHHHHcCCCCCCHHHHHHHHCc----CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHH
Confidence            34444454   357899999999999    899999999999999999877422  0112588999876554

>d2f2ea1 a.4.5.69 (A:5-146) Hypothetical protein PA1607 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: HxlR-like
domain: Hypothetical protein PA1607
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.27  E-value=0.031  Score=41.03  Aligned_cols=61  Identities=18%  Similarity=0.145  Sum_probs=47.2

Q ss_pred             cccccCCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc-CCCeEecChhchhhh
Q 043063           11 KKGRLANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG-GERKYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~-~~~~y~~t~~s~~l~   75 (301)
                      |+..|..|+.++.||.+.+|+    .+.-|..=|+.|...|+|.+..+.. ..-.|++|+.++.|.
T Consensus        25 Il~~l~~G~~rf~el~~~lgi----s~~vLs~rL~~L~~~gLv~r~~~~~p~r~~Y~LT~~G~~L~   86 (142)
T d2f2ea1          25 IVRDAFEGLTRFGEFQKSLGL----AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALF   86 (142)
T ss_dssp             HHHHHHTTCCSHHHHHHHHCC----CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTH
T ss_pred             HHHHHHcCCCCHHHHHHHhhc----cHHHHHHHHHHHHHhcceeeecCCCCCeeEEecCcCcchHH
Confidence            344455699999999999999    6888999999999999998742111 112499999887665

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=93.26  E-value=0.0067  Score=46.80  Aligned_cols=80  Identities=11%  Similarity=0.116  Sum_probs=52.4

Q ss_pred             CcceEEeecCCce--------------eeeeh-hHHHhhCCC-------CCceeEEeCCCCccC-----C--cccEeeHh
Q 043063          160 GVKRLVDVGGSAG--------------INFDL-PEVVAEAPS-------IPGVTHIGGDMFKSI-----P--AADAIFMK  210 (301)
Q Consensus       160 ~~~~vlDvGgG~g--------------~~~Dl-p~v~~~a~~-------~~ri~~~~gd~~~~~-----p--~~D~v~~~  210 (301)
                      ...+|||+.||+|              +.+|. +.+++.+++       .+++++..+|.++.+     .  ..|+|++-
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD  120 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD  120 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred             CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence            4579999999995              45576 555555432       368999999987632     1  24988864


Q ss_pred             hhhccCChHHHHHHHHHHHH--hCCCCCEEEEecc
Q 043063          211 WVLTTWTDDECKLIMENCYK--AIPAGGKLIACEP  243 (301)
Q Consensus       211 ~vlh~~~d~~~~~iL~~~~~--aL~pgg~lli~e~  243 (301)
                      =-.   ......++|..+.+  .|+|+|.++ +|.
T Consensus       121 PPY---~~~~~~~~l~~i~~~~~L~~~giIi-~E~  151 (182)
T d2fhpa1         121 PPY---AKQEIVSQLEKMLERQLLTNEAVIV-CET  151 (182)
T ss_dssp             CCG---GGCCHHHHHHHHHHTTCEEEEEEEE-EEE
T ss_pred             hhh---hhhHHHHHHHHHHHCCCCCCCEEEE-EEc
Confidence            321   22334577787765  588888655 554

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=93.25  E-value=0.047  Score=42.61  Aligned_cols=88  Identities=16%  Similarity=0.143  Sum_probs=50.3

Q ss_pred             HhhhcCCCCCCcceEEeecCCcee----------------eeeh-hHHHhhCCCCCceeEEeCCCCccCC--cccEeeHh
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAGI----------------NFDL-PEVVAEAPSIPGVTHIGGDMFKSIP--AADAIFMK  210 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g~----------------~~Dl-p~v~~~a~~~~ri~~~~gd~~~~~p--~~D~v~~~  210 (301)
                      -+++... .....+|+|.|||+|.                ++|+ |..+..   ..+..+..+|++...+  ..|+++..
T Consensus        10 ~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---~~~~~~~~~~~~~~~~~~~fd~ii~n   85 (223)
T d2ih2a1          10 FMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---PPWAEGILADFLLWEPGEAFDLILGN   85 (223)
T ss_dssp             HHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---CTTEEEEESCGGGCCCSSCEEEEEEC
T ss_pred             HHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---cccceeeeeehhccccccccceeccc
Confidence            3444443 4556799999999972                3343 222211   2345667777765422  24666654


Q ss_pred             hhhcc----------------------------CChHHHHHHHHHHHHhCCCCCEEEEec
Q 043063          211 WVLTT----------------------------WTDDECKLIMENCYKAIPAGGKLIACE  242 (301)
Q Consensus       211 ~vlh~----------------------------~~d~~~~~iL~~~~~aL~pgg~lli~e  242 (301)
                      --...                            ..+- ...++.++.+.|+|||++.++-
T Consensus        86 pP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~Fi~~al~~lk~~G~~~~I~  144 (223)
T d2ih2a1          86 PPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNL-YGAFLEKAVRLLKPGGVLVFVV  144 (223)
T ss_dssp             CCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCH-HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CccccccccccccchhhhhhhhhhhhccccCCCcchH-HHHHHHHHHHhcccCCceEEEE
Confidence            33211                            1111 2356788899999999876664

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=93.23  E-value=0.018  Score=48.45  Aligned_cols=85  Identities=19%  Similarity=0.225  Sum_probs=55.2

Q ss_pred             CCcceEEeecCCce--------------------eeeeh-hHHHhhCCC-----CCceeEEeCCCCccCCc--ccEeeHh
Q 043063          159 KGVKRLVDVGGSAG--------------------INFDL-PEVVAEAPS-----IPGVTHIGGDMFKSIPA--ADAIFMK  210 (301)
Q Consensus       159 ~~~~~vlDvGgG~g--------------------~~~Dl-p~v~~~a~~-----~~ri~~~~gd~~~~~p~--~D~v~~~  210 (301)
                      ....+|+|.+||+|                    +++|. +.++..|+.     .....+..+|.+...+.  .|+|++.
T Consensus       116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N  195 (328)
T d2f8la1         116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD  195 (328)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred             CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence            45678999999996                    24576 555554432     35677788887765443  5988877


Q ss_pred             hhhccCChHH----------------HHHHHHHHHHhCCCCCEEEEecc
Q 043063          211 WVLTTWTDDE----------------CKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       211 ~vlh~~~d~~----------------~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      --+......+                -..++.++.+.|+|||++.++-+
T Consensus       196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p  244 (328)
T d2f8la1         196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  244 (328)
T ss_dssp             CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence            5432211111                12469999999999998665543

>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: MexR repressor
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.08  E-value=0.021  Score=41.73  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=47.7

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      +.-++..|.. ++.|..+||+.+++    ++..+.++++.|+..|+|++.+..+  ..-.+.+|+.++.+.
T Consensus        38 q~~vL~~l~~~~~~t~~~la~~l~~----~~~~vsr~l~~L~~~G~v~r~~~~~D~R~~~l~lT~~G~~~~  104 (141)
T d1lnwa_          38 DVHVLKLIDEQRGLNLQDLGRQMCR----DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLAIH  104 (141)
T ss_dssp             HHHHHHHHHSSTTCBHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEECSSSSSSEEEEECHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHhhceeeeccCCCCcchhhccCHHHHHHH
Confidence            3445555644 66899999999999    8999999999999999999775221  112477888776543

>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Putative transcriptional regulator YusO
species: Bacillus subtilis [TaxId: 1423]

Probab=93.02  E-value=0.0098  Score=43.71  Aligned_cols=64  Identities=17%  Similarity=0.153  Sum_probs=49.6

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~   76 (301)
                      +..++..|.. ++.|..+||+.+++    ++..+.+.++.|+..|++.+.+.. .+.   .+.+|+.++.+..
T Consensus        37 q~~iL~~l~~~~~~t~~~la~~~~i----~~~~vs~~l~~L~~~glv~r~~~~-~D~R~~~v~lT~~G~~~~~  104 (143)
T d1s3ja_          37 QLFVLASLKKHGSLKVSEIAERMEV----KPSAVTLMADRLEQKNLIARTHNT-KDRRVIDLSLTDEGDIKFE  104 (143)
T ss_dssp             HHHHHHHHHHHSEEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEEECS-SCTTSEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHCCCCCHHHHHHHHCc----CHHHHHHHHHHHHHhhhheeeeec-CCCCceEEEECHHHHHHHH
Confidence            3445556654 78899999999999    899999999999999999977421 122   4888998876553

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=93.00  E-value=0.1  Score=41.76  Aligned_cols=89  Identities=11%  Similarity=0.016  Sum_probs=50.4

Q ss_pred             HhhhcCCCCCCcceEEeecCCce---------------ee----eehhHHHhhCCC--CCceeEEeCCCCccCC-c-ccE
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG---------------IN----FDLPEVVAEAPS--IPGVTHIGGDMFKSIP-A-ADA  206 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g---------------~~----~Dlp~v~~~a~~--~~ri~~~~gd~~~~~p-~-~D~  206 (301)
                      ++.+.+ .+.+..+|||+|||.|               ..    .|+.+.--....  .+-+++..++-....+ . +|+
T Consensus        57 ~~~~~~-~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D~  135 (257)
T d2p41a1          57 WFVERN-LVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDT  135 (257)
T ss_dssp             HHHHTT-SSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred             HHHHhc-CccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCCE
Confidence            344445 2777789999999995               12    233110000111  2445666664443433 3 588


Q ss_pred             eeHhhhhccCCh-----HHHHHHHHHHHHhCCCCCEEEE
Q 043063          207 IFMKWVLTTWTD-----DECKLIMENCYKAIPAGGKLIA  240 (301)
Q Consensus       207 v~~~~vlh~~~d-----~~~~~iL~~~~~aL~pgg~lli  240 (301)
                      |++-..-+ -++     .-..++|.-+.+.|+|||-+++
T Consensus       136 vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~gg~Fvv  173 (257)
T d2p41a1         136 LLCDIGES-SPNPTVEAGRTLRVLNLVENWLSNNTQFCV  173 (257)
T ss_dssp             EEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCEEEE
T ss_pred             EEeeCCCC-CCCchhhhhhHHHHHHHHHHHcccCCEEEE
Confidence            88764322 111     1244778888899999997665

>d1jgsa_ a.4.5.28 (A:) Multiple antibiotic resistance repressor, MarR {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Multiple antibiotic resistance repressor, MarR
species: Escherichia coli [TaxId: 562]

Probab=92.90  E-value=0.02  Score=41.77  Aligned_cols=63  Identities=14%  Similarity=0.100  Sum_probs=48.9

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      +..++..|.. ++.|..+||+.+++    ++..+.++++.|...|++++.+.. .++   .+++|+.++.+.
T Consensus        36 q~~vL~~l~~~~~~t~~ela~~~~i----~~~~vs~~v~~L~~~glv~r~~~~-~D~R~~~i~lT~~G~~~~  102 (138)
T d1jgsa_          36 QFKVLCSIRCAACITPVELKKVLSV----DLGALTRMLDRLVCKGWVERLPNP-NDKRGVLVKLTTGGAAIC  102 (138)
T ss_dssp             HHHHHHHHHHHSSBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECT-TCSSCEEEEECHHHHHHH
T ss_pred             HHHHHHhHHhCcCCCHHHHHHHHCC----CHhHHHHHHHHHhhCCCEEEeecc-CCCCeeEEEECHHHHHHH
Confidence            3444555543 78999999999999    899999999999999999976422 122   688899887664

>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator TM0710
species: Thermotoga maritima [TaxId: 2336]

Probab=92.75  E-value=0.045  Score=39.71  Aligned_cols=62  Identities=8%  Similarity=0.111  Sum_probs=47.8

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhhc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLVT   76 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~~   76 (301)
                      ++..|.. ++.|..+||+.+++    ++..+.+.++.|...|++++.....  ..-.+.+|+.++.+..
T Consensus        35 iL~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~   99 (139)
T d2a61a1          35 ILQKIYFEGPKRPGELSVLLGV----AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIE   99 (139)
T ss_dssp             HHHHHHHHCCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHhCC----CcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHH
Confidence            3444543 78999999999999    8999999999999999998774210  1125888998876654

>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator MgrA
species: Staphylococcus aureus [TaxId: 1280]

Probab=92.65  E-value=0.016  Score=42.21  Aligned_cols=63  Identities=13%  Similarity=0.178  Sum_probs=48.3

Q ss_pred             cccccccC-CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhhc
Q 043063            9 GGKKGRLA-NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLVT   76 (301)
Q Consensus         9 lglf~~L~-~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~~   76 (301)
                      ..++..|. .++.|..+||+.+++    ++..+.++++.|+..|++++.+.. .++   .+.+|+.++.+..
T Consensus        37 ~~vL~~i~~~~~~t~~~la~~l~~----~~~~~s~~l~~L~~~Gli~r~~~~-~D~R~~~l~lT~~G~~~~~  103 (136)
T d2bv6a1          37 FLVLTILWDESPVNVKKVVTELAL----DTGTVSPLLKRMEQVDLIKRERSE-VDQREVFIHLTDKSETIRP  103 (136)
T ss_dssp             HHHHHHHHHSSEEEHHHHHHHTTC----CTTTHHHHHHHHHHTTSEEEEECS-SSTTCEEEEECHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHCC----CHhHHHHHHHHHHHCCCEEEeecC-CcccchhhccCHHHHHHHH
Confidence            34455564 378899999999999    788999999999999999977432 122   5788988876543

>d2d1ha1 a.4.5.50 (A:1-109) Hypothetical transcriptional regulator ST1889 {Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: TrmB-like
domain: Hypothetical transcriptional regulator ST1889
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=92.57  E-value=0.034  Score=38.64  Aligned_cols=45  Identities=9%  Similarity=0.209  Sum_probs=38.5

Q ss_pred             cccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063            9 GGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus         9 lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      ..|+..|.  .||.|..+||+.+++    ++..+.+.|+.|...|+|.+.+
T Consensus        24 ~~iL~~L~~~~~~~t~~eLa~~~~i----~~~tvs~~l~~L~~~GlV~r~~   70 (109)
T d2d1ha1          24 VAVLLKMVEIEKPITSEELADIFKL----SKTTVENSLKKLIELGLVVRTK   70 (109)
T ss_dssp             HHHHHHHHHHCSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEE
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHCc----cHhHHHHHHHHHHHCCCEEEee
Confidence            44555553  478999999999999    8999999999999999998774

>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA3067
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.54  E-value=0.064  Score=39.13  Aligned_cols=64  Identities=20%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             ccccccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063            8 DGGKKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus         8 ~lglf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      ++.++..|.  +|++|..+||+.+++    ++..+.++++.|+..|+|.+.+..  ...-.+.+|+.++.+.
T Consensus        36 q~~vL~~L~~~~g~~t~~~La~~~~~----~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~  103 (145)
T d2hr3a1          36 QLVVLGAIDRLGGDVTPSELAAAERM----RSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNL  103 (145)
T ss_dssp             HHHHHHHHHHTTSCBCHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHCC----CHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHH
Confidence            344555563  368999999999999    899999999999999999977421  0112588899887654

>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: LprA
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.41  E-value=0.015  Score=35.98  Aligned_cols=46  Identities=13%  Similarity=0.146  Sum_probs=39.1

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|...|.+ +..|+.+||+++|+    ++..+.+=++.|...|++...
T Consensus         4 ~D~kIl~~L~~n~r~s~~~lA~~~gl----s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d1i1ga1           4 RDKIILEILEKDARTPFTEIAKKLGI----SETAVRKRVKALEEKGIIEGY   50 (60)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHTS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            34566777764 78899999999999    799999999999999999754

>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Putative transcriptional regulator PH1519
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.33  E-value=0.014  Score=36.02  Aligned_cols=46  Identities=17%  Similarity=0.096  Sum_probs=39.8

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ++..|.+.|.. +..|..+||+++|+    .+..+.+=++.|...|++...
T Consensus         4 ~D~~Il~~L~~n~r~s~~eiA~~l~l----s~~~v~~Ri~~L~~~giI~~~   50 (60)
T d2cyya1           4 IDKKIIKILQNDGKAPLREISKITGL----AESTIHERIRKLRESGVIKKF   50 (60)
T ss_dssp             HHHHHHHHHHHCTTCCHHHHHHHHCS----CHHHHHHHHHHHHHHTSSCCC
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            45667788875 78899999999999    799999999999999999855

>d2p8ta1 a.4.5.72 (A:14-82) Hypothetical protein PH0730 {Pyrococcus horikoshii [TaxId: 53953]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PH0730 N-terminal domain-like
domain: Hypothetical protein PH0730
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=92.29  E-value=0.052  Score=34.25  Aligned_cols=49  Identities=27%  Similarity=0.377  Sum_probs=41.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      .|+....||+.+|+    .++.++..++.|...|+++..     ...-.+|+.++.+.
T Consensus        16 qPiGRr~La~~L~l----~Er~vRte~~~Lk~~gLI~~~-----~~Gm~lTe~G~~~l   64 (69)
T d2p8ta1          16 EPLGRKQISERLEL----GEGSVRTLLRKLSHLDIIRSK-----QRGHFLTLKGKEIR   64 (69)
T ss_dssp             SCBCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC-------CEEECHHHHHHH
T ss_pred             CCccHHHHHHHcCC----cHHHHHHHHHHHHHCCCeeee-----CCCCEECHhHHHHH
Confidence            69999999999999    799999999999999999998     34567788776544

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=92.19  E-value=0.15  Score=40.37  Aligned_cols=81  Identities=15%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             CcceEEeecCCce-------------------eeeeh-hHHHhhC-CCCCceeEEeCCCCcc--C---Cc--ccEeeHhh
Q 043063          160 GVKRLVDVGGSAG-------------------INFDL-PEVVAEA-PSIPGVTHIGGDMFKS--I---PA--ADAIFMKW  211 (301)
Q Consensus       160 ~~~~vlDvGgG~g-------------------~~~Dl-p~v~~~a-~~~~ri~~~~gd~~~~--~---p~--~D~v~~~~  211 (301)
                      .+.+||+||.+.|                   +.+|. +...... ...+||++..||....  +   ..  .|.|++=.
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~  159 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDN  159 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEES
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcC
Confidence            3679999998774                   34565 3222222 1258999999997654  2   22  37666533


Q ss_pred             hhccCChHHHHHHHHHHHHhCCCCCEEEEeccc
Q 043063          212 VLTTWTDDECKLIMENCYKAIPAGGKLIACEPV  244 (301)
Q Consensus       212 vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~  244 (301)
                      . |..  +.+..-+ .....|+|||.++|-|.+
T Consensus       160 ~-H~~--~~v~~~~-~~~~lLk~GG~iIveD~i  188 (232)
T d2bm8a1         160 A-HAN--TFNIMKW-AVDHLLEEGDYFIIEDMI  188 (232)
T ss_dssp             S-CSS--HHHHHHH-HHHHTCCTTCEEEECSCH
T ss_pred             C-cch--HHHHHHH-HHhcccCcCCEEEEEcCC
Confidence            2 432  2233334 356789999999988864

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=92.18  E-value=0.043  Score=42.98  Aligned_cols=76  Identities=16%  Similarity=0.225  Sum_probs=52.0

Q ss_pred             cceEEeecCCce---------------eeeeh-h-------HHHhhCCCCCceeEEeCCCCccCC--cccEeeHhhhhcc
Q 043063          161 VKRLVDVGGSAG---------------INFDL-P-------EVVAEAPSIPGVTHIGGDMFKSIP--AADAIFMKWVLTT  215 (301)
Q Consensus       161 ~~~vlDvGgG~g---------------~~~Dl-p-------~v~~~a~~~~ri~~~~gd~~~~~p--~~D~v~~~~vlh~  215 (301)
                      ..+++|||+|.|               +.+|. .       +++... ..++++++.....+..+  ..|+|+++.+   
T Consensus        66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L-~L~nv~v~~~R~E~~~~~~~fD~V~sRA~---  141 (207)
T d1jsxa_          66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL-KLENIEPVQSRVEEFPSEPPFDGVISRAF---  141 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT-TCSSEEEEECCTTTSCCCSCEEEEECSCS---
T ss_pred             CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc-CCcceeeeccchhhhccccccceehhhhh---
Confidence            468999999996               23343 1       122221 14689999888765433  3699888765   


Q ss_pred             CChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          216 WTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       216 ~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                       .+  ...+++-+...++++|+++..-.
T Consensus       142 -~~--~~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         142 -AS--LNDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             -SS--HHHHHHHHTTSEEEEEEEEEEES
T ss_pred             -cC--HHHHHHHHHHhcCCCcEEEEECC
Confidence             33  34788888889999999988864

>d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Transcriptional regulator LrpC
species: Bacillus subtilis [TaxId: 1423]

Probab=92.01  E-value=0.023  Score=35.49  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=39.8

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .+..|.+.|.. ++.|..+||+.+|+    .+..+.+=++.|...|++...
T Consensus         6 ~D~~IL~~L~~n~r~s~~~iA~~lgi----s~~tv~~Ri~~L~~~giI~~~   52 (63)
T d2cfxa1           6 IDLNIIEELKKDSRLSMRELGRKIKL----SPPSVTERVRQLESFGIIKQY   52 (63)
T ss_dssp             HHHHHHHHHHHCSCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeeeE
Confidence            45567778874 78999999999999    688999999999999999754

>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Probable transcriptional regulator PA4135
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.87  E-value=0.017  Score=41.95  Aligned_cols=64  Identities=14%  Similarity=0.098  Sum_probs=49.5

Q ss_pred             ccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063            8 DGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT   76 (301)
Q Consensus         8 ~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~   76 (301)
                      +..++..|.. ++.|..+||+.+++    ++..+.++++.|...|++++.... .+   -.+++|+.+..+..
T Consensus        32 q~~vL~~l~~~~~~t~~~la~~~~i----~~~~vs~~i~~L~~~gli~r~~~~-~D~R~~~l~lT~~G~~~~~   99 (136)
T d2fbia1          32 QWRVIRILRQQGEMESYQLANQACI----LRPSMTGVLARLERDGIVRRWKAP-KDQRRVYVNLTEKGQQCFV   99 (136)
T ss_dssp             HHHHHHHHHHHCSEEHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEEEET-TEEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEeecC-ccCchhhhccCHHHHHHHH
Confidence            3345556654 78999999999999    899999999999999999977432 11   24888988876553

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.70  E-value=0.045  Score=41.94  Aligned_cols=97  Identities=25%  Similarity=0.359  Sum_probs=65.1

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCCC--CCceeEEeCCCCcc---CC-----c
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAPS--IPGVTHIGGDMFKS---IP-----A  203 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~~--~~ri~~~~gd~~~~---~p-----~  203 (301)
                      ..++++.+. ......+||..+|.|             +.+|. |.++..+++  .+|+.++.++|-.-   .+     .
T Consensus         7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~~~   85 (182)
T d1wg8a2           7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGVER   85 (182)
T ss_dssp             HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTCSC
T ss_pred             HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCCCc
Confidence            355666553 566788999988874             67898 888776653  57999999887542   11     2


Q ss_pred             ccEee-----HhhhhccCCh--HHHHHHHHHHHHhCCCCCEEEEecccc
Q 043063          204 ADAIF-----MKWVLTTWTD--DECKLIMENCYKAIPAGGKLIACEPVL  245 (301)
Q Consensus       204 ~D~v~-----~~~vlh~~~d--~~~~~iL~~~~~aL~pgg~lli~e~~~  245 (301)
                      .|.|+     .+.-|.+-.+  ......|......|+|||+++++..-.
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs  134 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHS  134 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSH
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEeccc
Confidence            35444     4444433222  123457889999999999999888733

>d1ku9a_ a.4.5.36 (A:) DNA-binding protein Mj223 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: DNA-binding protein Mj223
domain: DNA-binding protein Mj223
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=91.68  E-value=0.059  Score=39.52  Aligned_cols=43  Identities=21%  Similarity=0.292  Sum_probs=36.9

Q ss_pred             ccccc--CCCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           11 KKGRL--ANTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        11 lf~~L--~~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      |+-.|  .++|+|..+||+.+|+    ++..+.+.|+.|...|++.+..
T Consensus        31 i~~~L~~~~~plt~~ela~~l~v----sk~~vs~~l~~L~~~GlV~r~~   75 (151)
T d1ku9a_          31 VYAILYLSDKPLTISDIMEELKI----SKGNVSMSLKKLEELGFVRKVW   75 (151)
T ss_dssp             HHHHHHHCSSCEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEC
T ss_pred             HHHHHHhCCCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCEEEEE
Confidence            44445  4578999999999999    7999999999999999998663

>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator PA3341
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.39  E-value=0.11  Score=37.37  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=45.3

Q ss_pred             cccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063           11 KKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus        11 lf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      ++-.|.  .++.|..+||+.+++    ++..+.++++.|+..|++.+.... .++   ...+|+.++.+.
T Consensus        33 iL~~l~~~~~~~t~~~la~~~~~----~~~~vs~~v~~L~~~gli~r~~~~-~D~R~~~i~lT~~G~~~~   97 (137)
T d2fbha1          33 VLLHLARHRDSPTQRELAQSVGV----EGPTLARLLDGLESQGLVRRLAVA-EDRRAKHIVLTPKADVLI   97 (137)
T ss_dssp             HHHHHHHCSSCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEECCB-TTBCSCEEEECTTHHHHH
T ss_pred             HHHHHHHcCCCCcHHHHHHHHCC----CHHHHHHHHHHHHHcCCccccCCC-CCCCchhhhcCHHHHHHH
Confidence            344443  246899999999999    899999999999999999987421 111   477888776554

>d1jhfa1 a.4.5.2 (A:2-72) LexA repressor, N-terminal DNA-binding domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: LexA repressor, N-terminal DNA-binding domain
domain: LexA repressor, N-terminal DNA-binding domain
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.086  Score=33.53  Aligned_cols=35  Identities=20%  Similarity=0.247  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |-|+.|||+.+|++   .+..+.+.|+.|...|+|.+.
T Consensus        24 ~Ps~rei~~~~g~~---S~stv~~~l~~Le~kG~I~r~   58 (71)
T d1jhfa1          24 PPTRAEIAQRLGFR---SPNAAEEHLKALARKGVIEIV   58 (71)
T ss_dssp             CCCHHHHHHHTTCS---SHHHHHHHHHHHHHTTSEEEC
T ss_pred             CCCHHHHHHHcCCC---CHHHHHHHHHHHHHCcCeecC
Confidence            67999999999993   477899999999999999997

>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Lrp/AsnC-like transcriptional regulator N-terminal domain
domain: Regulatory protein AsnC
species: Escherichia coli [TaxId: 562]

Probab=91.27  E-value=0.022  Score=35.55  Aligned_cols=46  Identities=11%  Similarity=0.153  Sum_probs=39.7

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ++..|.+.|.. +..|..+||+.+|+    .+..+.+=++.|...|++...
T Consensus         6 ~D~~IL~~L~~~~r~s~~eiA~~l~l----s~~~v~~Ri~rL~~~GiI~~~   52 (63)
T d2cg4a1           6 LDRGILEALMGNARTAYAELAKQFGV----SPETIHVRVEKMKQAGIITGA   52 (63)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHTS----CHHHHHHHHHHHHHHTSEEEE
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHCc----CHHHHHHHHHHHHHCCCeEeE
Confidence            35567778875 78999999999999    788999999999999999865

>d2ev0a1 a.4.5.24 (A:2-62) Manganese transport regulator MntR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Manganese transport regulator MntR
species: Bacillus subtilis [TaxId: 1423]

Probab=90.84  E-value=0.049  Score=33.60  Aligned_cols=35  Identities=9%  Similarity=0.074  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ++.+..+||+.+|+    .+..+...++-|...|++...
T Consensus        20 ~~v~~~~iA~~L~v----s~~SVs~mikrL~~~GlV~~~   54 (61)
T d2ev0a1          20 GYARVSDIAEALAV----HPSSVTKMVQKLDKDEYLIYE   54 (61)
T ss_dssp             SSCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC-
T ss_pred             CCccHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence            78999999999999    688999999999999999987

>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Enterococcus faecalis [TaxId: 1351]

Probab=90.64  E-value=0.038  Score=40.45  Aligned_cols=59  Identities=19%  Similarity=0.250  Sum_probs=45.6

Q ss_pred             ccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063           12 KGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus        12 f~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      +..|.. ++.|..+||+.+++    ++..+.++++.|+..|++.+.+.. .+.   ...+|+.++.+.
T Consensus        35 L~~i~~~~~~t~~~la~~l~i----~~~tvs~~l~~L~~~glI~r~~~~-~D~R~~~l~LT~~G~~~~   97 (144)
T d1lj9a_          35 LVRVCENPGIIQEKIAELIKV----DRTTAARAIKRLEEQGFIYRQEDA-SNKKIKRIYATEKGKNVY   97 (144)
T ss_dssp             HHHHHHSTTEEHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECS-SCTTCEEEEECHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHHHHHCc----cHhhHHHHHHHHHhhhcccccCCC-CCCCccccccCHHHHHHH
Confidence            334443 67899999999999    899999999999999999987422 112   577888776554

>d2isya1 a.4.5.24 (A:2-64) Iron-dependent regulator IdeR {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Iron-dependent repressor protein
domain: Iron-dependent regulator IdeR
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.63  E-value=0.11  Score=32.14  Aligned_cols=36  Identities=8%  Similarity=0.142  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      .++.+..+||+.+|+    .+..+...++-|...|++...
T Consensus        21 ~~~v~~~~iA~~L~v----s~~SVt~mvkrL~~~Glv~~~   56 (63)
T d2isya1          21 GVTPLRARIAERLDQ----SGPTVSQTVSRMERDGLLRVA   56 (63)
T ss_dssp             TCCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEC
T ss_pred             CCCCcHHHHHHHhCC----CchhHHHHHHHHHHCCCEEEc
Confidence            367899999999999    688999999999999999987

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=90.49  E-value=0.11  Score=39.57  Aligned_cols=90  Identities=23%  Similarity=0.329  Sum_probs=53.2

Q ss_pred             HhhhcCCCCCCcceEEeecCCce----------------eeeehhHHHhhCCCCCceeEEeCCCCcc-C--------C--
Q 043063          150 SILDGYDGFKGVKRLVDVGGSAG----------------INFDLPEVVAEAPSIPGVTHIGGDMFKS-I--------P--  202 (301)
Q Consensus       150 ~~~~~~~~~~~~~~vlDvGgG~g----------------~~~Dlp~v~~~a~~~~ri~~~~gd~~~~-~--------p--  202 (301)
                      ++-+.+.-+++..+||||||+.|                +.+|+..    ....+.+.++.+|+... .        .  
T Consensus        12 EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~----~~~i~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T d1ej0a_          12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP----MDPIVGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC----CCCCTTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             HHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc----ccccCCceEeecccccchhhhhhhhhccCc
Confidence            44455544677889999999996                3456533    22356788888887653 1        1  


Q ss_pred             cccEeeHhhhhccCC----hH-----HHHHHHHHHHHhCCCCCEEEEecc
Q 043063          203 AADAIFMKWVLTTWT----DD-----ECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       203 ~~D~v~~~~vlh~~~----d~-----~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ..|+|+.=....--.    |+     -+...|.-+.+.|++||.+++-=.
T Consensus        88 ~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F  137 (180)
T d1ej0a_          88 KVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             CEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEe
Confidence            136665543322111    11     123445666777888888887655

>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Probable transcription regulator BT4300, C-terminal domain
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=90.47  E-value=0.16  Score=32.41  Aligned_cols=43  Identities=12%  Similarity=0.236  Sum_probs=37.4

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChh
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEI   70 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~   70 (301)
                      +.|-++||..+|+    ....+.|.|..|...|+++..     .+.+.+...
T Consensus        27 ~lt~~elA~~lg~----sr~tvsr~l~~l~~~g~I~~~-----~~~i~I~d~   69 (73)
T d1zyba1          27 KVKMDDLARCLDD----TRLNISKTLNELQDNGLIELH-----RKEILIPDA   69 (73)
T ss_dssp             ECCHHHHHHHHTS----CHHHHHHHHHHHHHTTSCEEE-----TTEEEESCG
T ss_pred             ecCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec-----CCEEEEccH
Confidence            5799999999999    799999999999999999977     667776543

>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Transcriptional regulator SlyA
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.42  E-value=0.11  Score=37.47  Aligned_cols=61  Identities=21%  Similarity=0.252  Sum_probs=45.4

Q ss_pred             cccccC--CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhc
Q 043063           11 KKGRLA--NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVT   76 (301)
Q Consensus        11 lf~~L~--~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~   76 (301)
                      ++..|.  +++.|..+||+.+++    ++..+.++++.|...|++++.+.. .+   -.+.+|+.++.+..
T Consensus        36 ~L~~l~~~~~~~t~~~la~~l~i----~~~~vs~~l~~L~~~glI~~~~~~-~D~R~~~l~lT~~G~~~~~  101 (140)
T d3deua1          36 TLHNIHQLPPDQSQIQLAKAIGI----EQPSLVRTLDQLEDKGLISRQTCA-SDRRAKRIKLTEKAEPLIA  101 (140)
T ss_dssp             HHHHHHHSCSSEEHHHHHHHHTS----CHHHHHHHHHHHHHTTSEEEC---------CEEEECGGGHHHHH
T ss_pred             HHHHHHHcCCCccHHHHHHHHCC----CHhHHHHHHHHHHhCCCEEecccC-CCCCceeeEECHHHHHHHH
Confidence            344453  245899999999999    899999999999999999976421 11   25889998876553

>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarR
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.22  E-value=0.06  Score=37.77  Aligned_cols=55  Identities=16%  Similarity=0.169  Sum_probs=43.3

Q ss_pred             CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063           17 NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus        17 ~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      +++.|..+||+.+++    ++..+.++++.|...|++.+.+...  ..-...+|+.++.+.
T Consensus        46 ~~~~t~~ela~~l~~----~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~  102 (115)
T d1hsja1          46 SNEISSKEIAKCSEF----KPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANI  102 (115)
T ss_dssp             CSEEEHHHHHHSSCC----CHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHH
T ss_pred             CCCcCHHHHHHHHCC----ChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHH
Confidence            467999999999999    8999999999999999999875320  111477788776544

>d1sfua_ a.4.5.19 (A:) 34L {Yaba-like disease virus, YLDV [TaxId: 132475]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: 34L
species: Yaba-like disease virus, YLDV [TaxId: 132475]

Probab=88.91  E-value=0.13  Score=32.22  Aligned_cols=42  Identities=12%  Similarity=0.053  Sum_probs=36.3

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      ..+.|.. ...|+.+||+.+|+    ..+-+.+.|..|...|.+.+.
T Consensus        15 ~l~~L~~~~~~tA~~LAk~Lg~----~Kk~VNr~LY~L~~~G~v~~~   57 (70)
T d1sfua_          15 EVLSLNTNDYTTAISLSNRLKI----NKKKINQQLYKLQKEDTVKMV   57 (70)
T ss_dssp             HHHTSCTTCEECHHHHHHHTTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             HHHhcCCCCCchHHHHHHHhCC----CHHHHHHHHHHHHHCCCeecC
Confidence            3455665 56899999999999    789999999999999999987

>d1xmka1 a.4.5.19 (A:294-366) Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Z-alpha domain of dsRNA-specific adenosine deaminase, ADAR1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.48  E-value=0.063  Score=34.15  Aligned_cols=59  Identities=15%  Similarity=0.059  Sum_probs=46.6

Q ss_pred             cccccccccCC-CCCCHHHHHHHhCCCCCCCc-ccHHHHHHHHhcCcceeccccccCCCeEecChhc
Q 043063            7 RDGGKKGRLAN-TPLSASQILTRILPSGGGDA-ENLQRILRLLTNYGVFSEHREFGGERKYSLTEIG   71 (301)
Q Consensus         7 ~~lglf~~L~~-g~~t~~ela~~~~~~~~~~~-~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s   71 (301)
                      .+-.|.+.|.. ||.|+-.||+.+|+    .. .-+.+.|..|...|-+.+..  ..+-.|.++.-.
T Consensus         6 ~eekI~~~L~~~g~~~Al~iak~lGl----~kakeVN~~LY~L~k~g~v~k~~--~tPP~W~L~~~~   66 (73)
T d1xmka1           6 IKEKICDYLFNVSDSSALNLAKNIGL----TKARDINAVLIDMERQGDVYRQG--TTPPIWHLTDKK   66 (73)
T ss_dssp             HHHHHHHHHHHTCCEEHHHHHHHHCG----GGHHHHHHHHHHHHHTTSEEEEC--SSSCEEEECHHH
T ss_pred             HHHHHHHHHHHcCCchHHHHHHHhCC----CcHHHHhHHHHHHHHCCCeecCC--CCCCceeeecch
Confidence            34567778865 89999999999999    44 46999999999999999872  135578888654

>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Pleiotropic regulator of virulence genes, SarA
species: Staphylococcus aureus [TaxId: 1280]

Probab=88.22  E-value=0.13  Score=35.88  Aligned_cols=54  Identities=7%  Similarity=0.122  Sum_probs=43.3

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      ++.|..+||+.+++    ++..+.++++.|...|++.+.+...  ..-.+.+|+.++.+.
T Consensus        48 ~~~t~~~la~~l~~----~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~  103 (115)
T d2frha1          48 KEYYLKDIINHLNY----KQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKI  103 (115)
T ss_dssp             SEEEHHHHHHHSSS----HHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHH
T ss_pred             CCCCHHHHHHHHCC----CHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHH
Confidence            56899999999999    7999999999999999999885321  112478888886543

>d2fxaa1 a.4.5.28 (A:6-167) Protease production regulatory protein Hpr {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Protease production regulatory protein Hpr
species: Bacillus subtilis [TaxId: 1423]

Probab=88.16  E-value=0.054  Score=40.61  Aligned_cols=62  Identities=15%  Similarity=0.020  Sum_probs=47.0

Q ss_pred             ccccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccc--cCCCeEecChhchhhh
Q 043063           10 GKKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREF--GGERKYSLTEIGKSLV   75 (301)
Q Consensus        10 glf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~--~~~~~y~~t~~s~~l~   75 (301)
                      .++..|.. ++.|..+||+.+++    ++..+.++++.|...|++.+.+..  ...-...+|+.++.+.
T Consensus        45 ~vL~~l~~~~~~t~~~la~~~~l----~~~tvs~~i~rL~~~gli~r~~~~~D~R~~~l~lT~~G~~~~  109 (162)
T d2fxaa1          45 HILWIAYQLNGASISEIAKFGVM----HVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEVF  109 (162)
T ss_dssp             HHHHHHHHHTSEEHHHHHHHTTC----CHHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHHH
T ss_pred             HHHhhhccCCCcCHHHHHHHHcC----CchhhHHHHHHHHHCCCceeecccccCeeeeeccCHhHHHHH
Confidence            34555544 78999999999999    899999999999999999987421  0111588888887554

>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Transcriptional regulator PG0396, C-terminal domain
species: Porphyromonas gingivalis [TaxId: 837]

Probab=87.59  E-value=0.34  Score=31.17  Aligned_cols=42  Identities=14%  Similarity=0.138  Sum_probs=36.6

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      |.|-.+||..+|+    .+..+.|.|..|...|+++..     .+.+.+..
T Consensus        29 ~lt~~eLA~~~G~----sretvsr~L~~l~~~glI~~~-----~~~i~I~d   70 (81)
T d2gaua1          29 YLSREELATLSNM----TVSNAIRTLSTFVSERMLALD-----GKRIKIID   70 (81)
T ss_dssp             CCCHHHHHHHTTS----CHHHHHHHHHHHHHTTSEEEE-----TTEEEESC
T ss_pred             cCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEec-----CCEEEEcC
Confidence            7899999999999    789999999999999999987     55665543

>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Catabolite gene activator protein (CAP), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.38  E-value=0.3  Score=30.47  Aligned_cols=34  Identities=24%  Similarity=0.360  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecc
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEH   56 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~   56 (301)
                      |.|-++||..+|+    ....+.|.|+.|...|+++..
T Consensus        29 ~lt~~~lA~~~G~----sRetvsr~L~~l~~~glI~~~   62 (69)
T d1i5za1          29 KITRQEIGQIVGC----SRETVGRILKMLEDQNLISAH   62 (69)
T ss_dssp             ECCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEE
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEc
Confidence            6899999999999    789999999999999999987

>d2obpa1 a.4.5.71 (A:12-92) Putative DNA-binding protein ReutB4095 {Ralstonia eutropha [TaxId: 106590]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: ReutB4095-like
domain: Putative DNA-binding protein ReutB4095
species: Ralstonia eutropha [TaxId: 106590]

Probab=87.22  E-value=0.51  Score=29.79  Aligned_cols=54  Identities=31%  Similarity=0.348  Sum_probs=43.8

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecChhchhhh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTEIGKSLV   75 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~~s~~l~   75 (301)
                      +|-|...|+++.++    +-..|+|.|..|...|+.+..-.+.+.|.=++|+.++.+.
T Consensus        23 ~~WSLaklsKra~~----PMS~LRR~LTqL~~aGl~~t~~~edG~G~A~Lt~~G~~lc   76 (81)
T d2obpa1          23 TPWSLPKIAKRAQL----PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEGAALA   76 (81)
T ss_dssp             CCCBHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHHHHHH
T ss_pred             CCccHHHHHhhcCC----cHHHHHHHHHHHhhcCceeeeeccCCcceeeccHHHHHHH
Confidence            57899999999999    6789999999999999987553222456788898887665

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=87.19  E-value=0.15  Score=40.94  Aligned_cols=51  Identities=18%  Similarity=0.256  Sum_probs=35.3

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhCC----CCCceeEEeCCCCc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEAP----SIPGVTHIGGDMFK  199 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a~----~~~ri~~~~gd~~~  199 (301)
                      ...+++..+ ..+...||+||+|.|             +.+|. +..++..+    ..++++++.+|+.+
T Consensus        10 ~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          10 IDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGG
T ss_pred             HHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHHHHHHhhhccchhHHhhhhhh
Confidence            445666664 667889999999997             34555 44443322    24789999999986

>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Organic hydroperoxide resistance transcriptional regulator OhrR
species: Bacillus subtilis [TaxId: 1423]

Probab=87.00  E-value=0.15  Score=36.56  Aligned_cols=62  Identities=21%  Similarity=0.228  Sum_probs=48.5

Q ss_pred             cccccCC-CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCC---CeEecChhchhhhcC
Q 043063           11 KKGRLAN-TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGE---RKYSLTEIGKSLVTD   77 (301)
Q Consensus        11 lf~~L~~-g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~---~~y~~t~~s~~l~~~   77 (301)
                      ++..|.. ++.|..+||+.+++    ++..+.+.++.|+..|+|.+.+.. .+   -...+|+.++.+...
T Consensus        38 vL~~l~~~~~~t~~~La~~~~i----~~~~vsr~i~~L~~~glv~r~~~~-~D~R~~~i~lT~~G~~~~~~  103 (137)
T d1z91a1          38 ALLLLWEHETLTVKKMGEQLYL----DSGTLTPMLKRMEQQGLITRKRSE-EDERSVLISLTEDGALLKEK  103 (137)
T ss_dssp             HHHHHHHHSEEEHHHHHHTTTC----CHHHHHHHHHHHHHHTSEECCBCS-SCTTSBEEEECHHHHSGGGG
T ss_pred             HHHHHHcCCCCCHHHHHHHHCc----CHHHHHHHHHHHhhccceEEeecC-CCCCeEEEEECHHHHHHHHH
Confidence            4445543 78999999999999    899999999999999999987531 11   247899988766543

>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.94  E-value=0.16  Score=35.98  Aligned_cols=62  Identities=15%  Similarity=0.114  Sum_probs=46.1

Q ss_pred             ccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceecccccc--CCCeEecChhchhhh
Q 043063           10 GKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFG--GERKYSLTEIGKSLV   75 (301)
Q Consensus        10 glf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~--~~~~y~~t~~s~~l~   75 (301)
                      -++..|.   ++++|..+||+.+++    .+..+.+.++.|...|+|.+.+...  ..-...+|+.++...
T Consensus        38 ~iL~~l~~~~~~~~t~~eia~~~~~----~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~  104 (125)
T d1p4xa1          38 ILLTYLFHQQENTLPFKKIVSDLCY----KQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKI  104 (125)
T ss_dssp             HHHHHHHSCSCSEEEHHHHHHHSSS----CGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHH
T ss_pred             HHHHHHHHhccCCcCHHHHHHHhCC----CcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHH
Confidence            3444452   367899999999999    7899999999999999999875320  111477788876543

>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: MarR-like transcriptional regulators
domain: Staphylococcal accessory regulator A homolog, SarS
species: Staphylococcus aureus [TaxId: 1280]

Probab=86.65  E-value=0.23  Score=35.22  Aligned_cols=62  Identities=10%  Similarity=0.071  Sum_probs=46.3

Q ss_pred             cccccccC---CCCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCC---eEecChhchhhh
Q 043063            9 GGKKGRLA---NTPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGER---KYSLTEIGKSLV   75 (301)
Q Consensus         9 lglf~~L~---~g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~---~y~~t~~s~~l~   75 (301)
                      +-++..|.   +++.|..+||+.+++    ++..+.+.++.|...|++.+.+.. .+.   ...+|+.++.+.
T Consensus        36 ~~vL~~l~~~~~~~~~~~~ia~~l~~----~~~~vs~~v~~L~~~glV~r~~~~-~D~R~v~i~LT~~G~~~~  103 (125)
T d1p4xa2          36 FTILAIITSQNKNIVLLKDLIETIHH----KYPQTVRALNNLKKQGYLIKERST-EDERKILIHMDDAQQDHA  103 (125)
T ss_dssp             HHHHHHHHTTTTCCEEHHHHHHHSSS----CHHHHHHHHHHHHHHTSSEEEECS-SSTTCEEEECCHHHHHHH
T ss_pred             HHHHHHHHHccCCCccHHHHHHHHCC----CcchHHHHHHHHHhccCEeeeecC-CCCCeEEEEECHHHHHHH
Confidence            33455552   256899999999999    799999999999999999977432 111   477788776544

>d1j75a_ a.4.5.19 (A:) Dlm-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Z-DNA binding domain
domain: Dlm-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.42  E-value=0.09  Score=30.81  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=43.7

Q ss_pred             ccccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEec
Q 043063            8 DGGKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSL   67 (301)
Q Consensus         8 ~lglf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~   67 (301)
                      |-.|++.|.+  +|.-..+|++++.+    +..-+.++|..|...+=+...    +++.|++
T Consensus         3 EQkILQVL~dagspvk~~ql~k~cqV----pkk~lNqVL~rlkke~kVsl~----~patW~l   56 (57)
T d1j75a_           3 EQKILQVLSDDGGPVKIGQLVKKCQV----PKKTLNQVLYRLKKEDRVSSP----EPATWSI   56 (57)
T ss_dssp             HHHHHHHHHHHCSCEEHHHHHHHHCS----CHHHHHHHHHHHHHTTSEEEE----ETTEEEE
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHCC----CHHHHHHHHHHHHhccccccC----CCccccC
Confidence            4457777864  78999999999999    788999999999999988877    4778876

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.18  E-value=1  Score=36.33  Aligned_cols=78  Identities=21%  Similarity=0.340  Sum_probs=46.2

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCce-------------eeeeh-hHHHhhC----CC---CCceeEEeCCCCcc-CCccc
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAG-------------INFDL-PEVVAEA----PS---IPGVTHIGGDMFKS-IPAAD  205 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g-------------~~~Dl-p~v~~~a----~~---~~ri~~~~gd~~~~-~p~~D  205 (301)
                      ...+++..+ .....+||+||+|.|             +.++. +..++..    ..   .++++++.+|+++. +|..+
T Consensus        10 ~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~~~   88 (278)
T d1zq9a1          10 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPFFD   88 (278)
T ss_dssp             HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCCCS
T ss_pred             HHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhhhh
Confidence            455666664 667789999999997             34443 2222221    11   36899999999875 56544


Q ss_pred             EeeHhhhhccCChHHHHHHHHHHHHh
Q 043063          206 AIFMKWVLTTWTDDECKLIMENCYKA  231 (301)
Q Consensus       206 ~v~~~~vlh~~~d~~~~~iL~~~~~a  231 (301)
                      .++ +    ++|=.-...++.++...
T Consensus        89 ~vV-~----NLPY~Iss~il~~~~~~  109 (278)
T d1zq9a1          89 TCV-A----NLPYQISSPFVFKLLLH  109 (278)
T ss_dssp             EEE-E----ECCGGGHHHHHHHHHHC
T ss_pred             hhh-c----chHHHHHHHHHHHHHhh
Confidence            332 2    33333344566665543

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=85.08  E-value=0.17  Score=40.23  Aligned_cols=79  Identities=19%  Similarity=0.294  Sum_probs=50.9

Q ss_pred             CCCcceEEeecCCce---------------eeeehh--------HHHhhCCCCCceeEEeCCCCc-----cCC-cccEee
Q 043063          158 FKGVKRLVDVGGSAG---------------INFDLP--------EVVAEAPSIPGVTHIGGDMFK-----SIP-AADAIF  208 (301)
Q Consensus       158 ~~~~~~vlDvGgG~g---------------~~~Dlp--------~v~~~a~~~~ri~~~~gd~~~-----~~p-~~D~v~  208 (301)
                      +....+++|||+|.|               +.+|.-        .++... ...++.++.+...+     +.. ..|+|+
T Consensus        68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L-~L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL-QLENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-TCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh-CCCCcEEEeehhhhccccccccccceEEE
Confidence            445679999999996               233321        111111 13677777765432     112 259999


Q ss_pred             HhhhhccCChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          209 MKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       209 ~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      ++.+    .+  ...+|.-+...+++||+++..-.
T Consensus       147 sRAv----a~--l~~ll~~~~~~l~~~g~~i~~KG  175 (239)
T d1xdza_         147 ARAV----AR--LSVLSELCLPLVKKNGLFVALKA  175 (239)
T ss_dssp             EECC----SC--HHHHHHHHGGGEEEEEEEEEEEC
T ss_pred             Ehhh----hC--HHHHHHHHhhhcccCCEEEEECC
Confidence            8865    33  34899999999999999988765

>d1ft9a1 a.4.5.4 (A:134-213) CO-sensing protein CooA, C-terminal domain {Rhodospirillum rubrum [TaxId: 1085]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: CO-sensing protein CooA, C-terminal domain
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=84.22  E-value=0.7  Score=29.56  Aligned_cols=43  Identities=19%  Similarity=0.308  Sum_probs=37.0

Q ss_pred             CCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           19 PLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        19 ~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      |.|-++||..+|+    ....+.|.|+.|...|+++..    ..+.+....
T Consensus        30 ~~t~~eiA~~lG~----sretvsr~l~~l~~~g~I~~~----~~~~i~I~d   72 (80)
T d1ft9a1          30 DFTVEEIANLIGS----SRQTTSTALNSLIKEGYISRQ----GRGHYTIPN   72 (80)
T ss_dssp             CCCHHHHHHHHCS----CHHHHHHHHHHHHHTTSSEEC----STTCEECSS
T ss_pred             CCCHHHHHHHHCC----CHHHHHHHHHHHHHCCCEEEC----CCCeEEECC
Confidence            7899999999999    799999999999999999976    245666654

>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Helicase DNA-binding domain
domain: Hypothetical protein SSO1545, C-terminal domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=83.85  E-value=0.55  Score=29.63  Aligned_cols=49  Identities=16%  Similarity=0.093  Sum_probs=37.2

Q ss_pred             cccccCCCCCCHHHHHHHh----C--CCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           11 KKGRLANTPLSASQILTRI----L--PSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        11 lf~~L~~g~~t~~ela~~~----~--~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      |.+.++.| .+-++|-.-+    |  +    +...+..+|+.|+.+|++++.     ++.|+.+.
T Consensus        11 ILkaia~G-~rWs~IK~yle~~~G~~I----~d~~ls~lL~nL~k~~~iek~-----~~~Y~i~D   65 (73)
T d2fnaa1          11 IMRTLSKC-GKWSDVKRALELEEGIEI----SDSEIYNYLTQLTKHSWIIKE-----GEKYCPSE   65 (73)
T ss_dssp             HHHHHTTC-BCHHHHHHHHHHHHCSCC----CHHHHHHHHHHHHHTTSEEES-----SSCEEESS
T ss_pred             HHHHHHcc-CcHHHHHHHHHHHcCCCC----ChHHHHHHHHHHHHcCceeec-----CCeeccCc
Confidence            45666666 5777765443    5  4    567999999999999999987     67898864

>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: CAP C-terminal domain-like
domain: Chlorophenol reduction protein CprK
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=83.41  E-value=0.54  Score=30.13  Aligned_cols=43  Identities=19%  Similarity=0.199  Sum_probs=34.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccccccCCCeEecCh
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHREFGGERKYSLTE   69 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~~~~~~~~y~~t~   69 (301)
                      =|+|-.+||..+|+    ....+.+.|..|...|+++..     .+.+....
T Consensus        29 ~~lt~~elA~~~g~----sretvsr~l~~l~~~glI~~~-----~~~i~I~d   71 (80)
T d3e5ua1          29 MPLSQKSIGEITGV----HHVTVSRVLASLKRENILDKK-----KNKIIVYN   71 (80)
T ss_dssp             SCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEC---------CEESC
T ss_pred             eCCCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEec-----CCEEEEcC
Confidence            37899999999999    788999999999999999877     45555543

>d2hs5a1 a.4.5.6 (A:25-93) Putative transcriptional regulator RHA1_ro03477 {Rhodococcus sp. RHA1 [TaxId: 101510]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Putative transcriptional regulator RHA1 ro03477
species: Rhodococcus sp. RHA1 [TaxId: 101510]

Probab=83.27  E-value=0.69  Score=28.77  Aligned_cols=36  Identities=11%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           18 TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        18 g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      ..++..+||+..|+    ...-+++-|+.|.+.|+|...+
T Consensus        24 ~~l~~~~La~~~~v----Sr~tvr~Al~~L~~~Gli~~~~   59 (69)
T d2hs5a1          24 ARLSEPDICAALDV----SRNTVREAFQILIEDRLVAHEL   59 (69)
T ss_dssp             CEECHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET
T ss_pred             CccCHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEEc
Confidence            34578999999999    7889999999999999999884

>d1q1ha_ a.4.5.41 (A:) Transcription factor E/IIe-alpha, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcription factor E/IIe-alpha, N-terminal domain
domain: Transcription factor E/IIe-alpha, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=81.17  E-value=0.15  Score=33.65  Aligned_cols=44  Identities=18%  Similarity=0.277  Sum_probs=37.7

Q ss_pred             ccccccCC--CCCCHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           10 GKKGRLAN--TPLSASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        10 glf~~L~~--g~~t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .|++.|.+  +.+|=++||+.+|+    ....+++.|..|...|++...+
T Consensus        22 ~v~~~L~~~~~evtDe~iA~~tgi----~in~VRk~Ly~L~~~~L~~y~R   67 (88)
T d1q1ha_          22 DVLRILLDKGTEMTDEEIANQLNI----KVNDVRKKLNLLEEQGFVSYRK   67 (88)
T ss_dssp             HHHHHHHHHCSCBCHHHHHHTTTS----CHHHHHHHHHHHHHHTSCEEEE
T ss_pred             HHHHHHHhccCcCCHHHHHHHhCC----cHHHHHHHHHHHHhCCceEEEE
Confidence            46776642  57899999999999    8999999999999999997654

>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.92  E-value=2.9  Score=34.40  Aligned_cols=87  Identities=14%  Similarity=0.226  Sum_probs=64.2

Q ss_pred             cceEEeecCCc------------e---eeeehhHHHhhCC---------------------------CCCceeEEeCCCC
Q 043063          161 VKRLVDVGGSA------------G---INFDLPEVVAEAP---------------------------SIPGVTHIGGDMF  198 (301)
Q Consensus       161 ~~~vlDvGgG~------------g---~~~Dlp~v~~~a~---------------------------~~~ri~~~~gd~~  198 (301)
                      ...||-+|||.            +   +=+|.|++++.=.                           ..++..+++.|+.
T Consensus        97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~  176 (328)
T d1rjda_          97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLN  176 (328)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTT
T ss_pred             CcEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCCC
Confidence            46899999999            1   2247788775310                           0267899999987


Q ss_pred             cc--CC---------c-ccEeeHhhhhccCChHHHHHHHHHHHHhCCCCCEEEEeccccCCC
Q 043063          199 KS--IP---------A-ADAIFMKWVLTTWTDDECKLIMENCYKAIPAGGKLIACEPVLPDD  248 (301)
Q Consensus       199 ~~--~p---------~-~D~v~~~~vlh~~~d~~~~~iL~~~~~aL~pgg~lli~e~~~~~~  248 (301)
                      +.  ..         + .-+++.--+|.+++++++.++|+.+.+.. |++.+++.|.+.+..
T Consensus       177 d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~~  237 (328)
T d1rjda_         177 DITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ  237 (328)
T ss_dssp             CHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS
T ss_pred             CcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCCC
Confidence            53  11         1 14788888999999999999999988876 467788999986543

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=80.09  E-value=0.42  Score=41.26  Aligned_cols=94  Identities=17%  Similarity=0.215  Sum_probs=57.0

Q ss_pred             hHHhhhcCCCCCCcceEEeecCCcee----------------------------eeeh-hHHHhhCC--------CCCce
Q 043063          148 MTSILDGYDGFKGVKRLVDVGGSAGI----------------------------NFDL-PEVVAEAP--------SIPGV  190 (301)
Q Consensus       148 ~~~~~~~~~~~~~~~~vlDvGgG~g~----------------------------~~Dl-p~v~~~a~--------~~~ri  190 (301)
                      +.-+++.++ .....+|+|-.||+|.                            ++|. |.....++        .....
T Consensus       151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~  229 (425)
T d2okca1         151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS  229 (425)
T ss_dssp             HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred             hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence            344455553 4456899999999962                            3343 33332221        12456


Q ss_pred             eEEeCCCCccCCc--ccEeeHhhhhccC----------------ChHHHHHHHHHHHHhCCCCCEEEEecc
Q 043063          191 THIGGDMFKSIPA--ADAIFMKWVLTTW----------------TDDECKLIMENCYKAIPAGGKLIACEP  243 (301)
Q Consensus       191 ~~~~gd~~~~~p~--~D~v~~~~vlh~~----------------~d~~~~~iL~~~~~aL~pgg~lli~e~  243 (301)
                      .+..+|.+...+.  .|+|+..--+..-                .+. -..++.++.+.|+|||++.++-+
T Consensus       230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~-~~~Fi~~~~~~Lk~~G~~~iI~p  299 (425)
T d2okca1         230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNN-QLNFLQHMMLMLKTGGRAAVVLP  299 (425)
T ss_dssp             SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCH-HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccH-HHHHHHHHHHhcCCCCeEEEEec
Confidence            6777888765333  5888776544211                111 24589999999999998766643

>d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: GntR-like transcriptional regulators
domain: Fatty acid responsive transcription factor FadR, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.06  E-value=0.96  Score=28.56  Aligned_cols=35  Identities=17%  Similarity=0.202  Sum_probs=32.1

Q ss_pred             CC-CHHHHHHHhCCCCCCCcccHHHHHHHHhcCcceeccc
Q 043063           19 PL-SASQILTRILPSGGGDAENLQRILRLLTNYGVFSEHR   57 (301)
Q Consensus        19 ~~-t~~ela~~~~~~~~~~~~~l~~lL~~L~~~g~l~~~~   57 (301)
                      .+ |..+||+.+++    ...-+++-++.|+..|+|...+
T Consensus        26 ~LPs~~eLa~~~~v----Sr~tvr~Al~~L~~~G~i~~~~   61 (74)
T d1hw1a1          26 ILPAERELSELIGV----TRTTLREVLQRLARDGWLTIQH   61 (74)
T ss_dssp             BCCCHHHHHHHHTC----CHHHHHHHHHHHHHTTSEEEET
T ss_pred             CCccHHHHHHHHCC----CHHHHHHHHHHHHHCCcEEEEe
Confidence            45 78999999999    7899999999999999999884