Citrus Sinensis ID: 043104

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570
MEMMKISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSDSGVTPLLSSTTGSWKLIGGLLLCFFWRS
ccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHHHHHHcccEEEEEccccccccccccccccEEEEEccccccEEEEccccEEEEcccccHHHHHHHHHHccccccccccccccccccccccccccHHHHHHccccccEEEEEEEEEccccEEEccccccccEEEEEccccccEEEEEEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHcccccccccEEEEEEEccccccccEEEEEEEEEEccHHHHHHHHHHccccccccccccEEccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEccc
cccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccEEEccccccHHHHHHHHHHccccccccccccEEEEEccccHHHEEHEHHHHHcccEEEEEcccccccccEEEccccEEEEEcHHcccEEEEcccccEEEEccccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHccccccEEEEEEEEccccEEcHHHHccHHHHEEEccccccEEEEEEEEEEEEccccEEEEEEEcccHcccHHHHHHHHHHHHHcccccEEEEEEEEEccccccEEEEEEEEEEEcccHHHHHHHHHHHccHccccHccHHEHHHHHHHHHHccccccccHHHHHccccccHHHHccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEcc
MEMMKISTLCSTSFRLSTILLVLCFfnfpitraasdSAYESFLQCLTqqtnssdqqISNIVVTQTNSSYASVLRAYIRNARfnlsstlkptviitplqeAHVSAAVICSKQVGFQLkirsgghdyeglsyisdrpffildmfnlrsidvdvkdesawVEAGATLGELYYRIWQKsklhgypagvcptvgvgghlsgggygnmlrkfglstdnvvdakivdvRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIklvpvpetVTVFRAERLLAENATDVVYKWQlvapatddnlFMRMLlqpvtrnkkptVRASIVALYLGGADSLVTLLAKdfpelglkkeNVMEMSWIQSVLWWAnfdngtspnvlldrdlnsadflkrksdyvqkpipkySLNLLWKQMMELGKIGlvfnpyggkmaeipasetafphragNLFKIQYsiswsdpgteieeDRLSQATSlysfmtpfvsksprsaylnyrdvdiginhhgedsyaegkvygekyfngnfdRLVKVKTmvdpenffrneqsiptqprsdsgvtpllssttgSWKLIGGLLLCFFWRS
MEMMKISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLlaenatdvvyKWQLVAPATDDNLFMRMLLQpvtrnkkptvRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLkrksdyvqkpipKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFfrneqsiptqprsdsgvtPLLSsttgswkliGGLLLCFFWRS
MEMMKISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVgvgghlsgggygNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSDSGVTPLLSSTTGSWKLIGGLLLCFFWRS
*****ISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQ******QISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGT********QATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFF*******************LSSTTGSWKLIGGLLLCFFW**
**************RLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQS*****************************LCFFWRS
********LCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSI************LLSSTTGSWKLIGGLLLCFFWRS
****KISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRS*SGVTPLL*STTGSWKLIGGLLLCFFWRS
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEMMKISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSDSGVTPLLSSTTGSWKLIGGLLLCFFWRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query570 2.2.26 [Sep-21-2011]
Q9SVG4570 Reticuline oxidase-like p no no 0.921 0.921 0.663 0.0
A6P6V9544 Cannabidiolic acid syntha N/A no 0.868 0.909 0.465 1e-126
A6P6W0545 Cannabidiolic acid syntha N/A no 0.922 0.965 0.446 1e-125
A6P6W1545 Cannabidiolic acid syntha N/A no 0.922 0.965 0.444 1e-125
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.903 0.944 0.449 1e-124
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.905 0.946 0.441 1e-120
P93479535 Reticuline oxidase OS=Pap N/A no 0.878 0.936 0.406 1e-91
P30986538 Reticuline oxidase OS=Esc N/A no 0.859 0.910 0.383 5e-89
Q796Y5451 Uncharacterized FAD-linke yes no 0.724 0.915 0.268 4e-25
O06997447 Uncharacterized FAD-linke no no 0.757 0.966 0.267 2e-22
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function desciption
 Score =  679 bits (1752), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/529 (66%), Positives = 416/529 (78%), Gaps = 4/529 (0%)

Query: 35  SDSAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVII 94
           S+S Y SFL+C + +T S   QI++ V +QTN +++SVLRAYIRNARFN SSTLKPT+II
Sbjct: 32  SNSVYNSFLKCFSDKTKSPQSQITDNVFSQTNPAFSSVLRAYIRNARFNTSSTLKPTIII 91

Query: 95  TPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDE 154
           TP  E+HVSAAV CSK + F LKIRSGGHDY+GLSYISD+PFFILDM N+R + VD+   
Sbjct: 92  TPRSESHVSAAVTCSKTLNFLLKIRSGGHDYDGLSYISDKPFFILDMSNIRDVSVDIASN 151

Query: 155 SAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVV 214
           SAW+ AGATLGE+YYRIW+KS++HG+PAGVCPTVGVGGHLSGGGYGNM+RKFGLS D V 
Sbjct: 152 SAWISAGATLGEVYYRIWEKSRVHGFPAGVCPTVGVGGHLSGGGYGNMVRKFGLSVDYVE 211

Query: 215 DAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA 274
           DAKIVDV GR+LDRKAMGEDLFWAI GGGG S+GVVL YK+KLVPVP  VTVFR E+ + 
Sbjct: 212 DAKIVDVNGRVLDRKAMGEDLFWAITGGGGGSYGVVLGYKVKLVPVPSVVTVFRVEQYMD 271

Query: 275 ENATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKD 334
             A D+V+KWQ V P TD NLFMRML+QPVTR K  TVRAS+VAL+LG AD +V LL+K+
Sbjct: 272 SGAVDMVHKWQSVGPKTDPNLFMRMLIQPVTRKKVKTVRASVVALFLGRADEVVALLSKE 331

Query: 335 FPELGLKKENVMEMSWIQSVLWWANFDNGTS--PNVLLDRDLNSADFLKRKSDYVQKPIP 392
           FPELGLKKEN  EM+W QS LWW N  N T   P V LDR+L+++ F KRKSDYV   IP
Sbjct: 332 FPELGLKKENCSEMTWFQSALWWDNRLNATQVDPKVFLDRNLDTSSFGKRKSDYVATAIP 391

Query: 393 KYSLNLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTE 452
           K  +  L+K+M+ELGKIGLVFNPYGGKMAE+  +   FPHR   LFKIQYS++W +   E
Sbjct: 392 KKGIESLFKKMIELGKIGLVFNPYGGKMAEVAVNAKPFPHR-NKLFKIQYSVNWKENSAE 450

Query: 453 IEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGN 512
           IE+  L+QA  LYSFMT FVSK+PRS+Y NYRDVDIG+N HG +SY EG+VYG KYF  N
Sbjct: 451 IEKGYLNQAKVLYSFMTGFVSKNPRSSYFNYRDVDIGVNDHGANSYKEGEVYGRKYFGEN 510

Query: 513 FDRLVKVKTMVDPENFFRNEQSIPTQPRSDSGVTPLLSSTTGSWKLIGG 561
           FDRLVK+KT VDP NFFRNEQSIPT  +++ G+          W  +GG
Sbjct: 511 FDRLVKIKTAVDPGNFFRNEQSIPTL-KNEKGMLLPEPGKARRWSRVGG 558

Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 2EC: 1EC: .EC: -EC: .EC: -
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query570
255564321539 Reticuline oxidase precursor, putative [ 0.877 0.927 0.740 0.0
341819340539 berberine bridge enzyme [Hevea brasilien 0.901 0.953 0.732 0.0
255564323539 Reticuline oxidase precursor, putative [ 0.877 0.927 0.736 0.0
224056797536 predicted protein [Populus trichocarpa] 0.914 0.972 0.703 0.0
224115646535 predicted protein [Populus trichocarpa] 0.884 0.942 0.728 0.0
356528098577 PREDICTED: reticuline oxidase-like prote 0.919 0.908 0.672 0.0
147846526532 hypothetical protein VITISV_003752 [Viti 0.877 0.939 0.705 0.0
356510760582 PREDICTED: reticuline oxidase-like prote 0.919 0.900 0.661 0.0
225444139532 PREDICTED: reticuline oxidase-like prote 0.877 0.939 0.701 0.0
449433535531 PREDICTED: reticuline oxidase-like prote 0.894 0.960 0.682 0.0
>gi|255564321|ref|XP_002523157.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537564|gb|EEF39188.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 371/501 (74%), Positives = 450/501 (89%), Gaps = 1/501 (0%)

Query: 37  SAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITP 96
           S Y SFLQCL   T   DQ IS++V T+ N+SY SVLRAYIRNAR N ++T KPT+I+TP
Sbjct: 35  SVYTSFLQCLQNNTTPQDQ-ISSLVYTKANASYTSVLRAYIRNARMNTTATPKPTIIVTP 93

Query: 97  LQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESA 156
            Q +HV AAVIC+K+VG+QLK+RSGGHDYEG+SY+SD PFF+LDMFNLRS+ VD+K+ESA
Sbjct: 94  KQISHVQAAVICAKKVGYQLKVRSGGHDYEGISYVSDVPFFVLDMFNLRSVQVDMKNESA 153

Query: 157 WVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDA 216
           W++AGATLGE+Y+ IW+ SK+HG+PAG+CPTVGVGGH+SGGGYGNMLRK+GL+ DN++DA
Sbjct: 154 WIQAGATLGEVYHGIWENSKVHGFPAGICPTVGVGGHISGGGYGNMLRKYGLAVDNILDA 213

Query: 217 KIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAEN 276
           +IVDV G+++DRKAMGEDLFWAIRGGGG SFGVV++YKIKLVPVPETVT+FRAER++ EN
Sbjct: 214 QIVDVNGKLMDRKAMGEDLFWAIRGGGGGSFGVVISYKIKLVPVPETVTIFRAERVIEEN 273

Query: 277 ATDVVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFP 336
           ATD+ YKWQLVAP TD+ LFMRML+QPVTRNK+ T+R SIV+LYLG ADSLV LL K+FP
Sbjct: 274 ATDIAYKWQLVAPKTDNGLFMRMLMQPVTRNKQQTLRVSIVSLYLGNADSLVALLGKEFP 333

Query: 337 ELGLKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSL 396
           ELGLKKEN  EM+WIQSVLWWANFDNGTSP+VLLDR+++SA+FLKRKSDYVQKPIPK +L
Sbjct: 334 ELGLKKENCTEMNWIQSVLWWANFDNGTSPDVLLDRNVDSANFLKRKSDYVQKPIPKNAL 393

Query: 397 NLLWKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEED 456
            L++K+MMELGKIGLVFNPYGG+M EIP++E  FPHRAGNLFK+QYSI+W++PG++++ +
Sbjct: 394 TLIFKRMMELGKIGLVFNPYGGRMDEIPSTEVPFPHRAGNLFKMQYSINWNEPGSDLQSN 453

Query: 457 RLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRL 516
            LSQA +LYS+MTPFVSK+PRSA+LNYRD+DIG+   G++SY EG +YG KYFNGNFDRL
Sbjct: 454 YLSQARNLYSYMTPFVSKNPRSAFLNYRDLDIGVMTPGKNSYEEGSIYGYKYFNGNFDRL 513

Query: 517 VKVKTMVDPENFFRNEQSIPT 537
           VKVKT VDPENFFRNEQSIPT
Sbjct: 514 VKVKTAVDPENFFRNEQSIPT 534

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|341819340|gb|AEK87147.1| berberine bridge enzyme [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255564323|ref|XP_002523158.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537565|gb|EEF39189.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224056797|ref|XP_002299028.1| predicted protein [Populus trichocarpa] gi|222846286|gb|EEE83833.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115646|ref|XP_002317087.1| predicted protein [Populus trichocarpa] gi|222860152|gb|EEE97699.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356528098|ref|XP_003532642.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|147846526|emb|CAN81650.1| hypothetical protein VITISV_003752 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356510760|ref|XP_003524102.1| PREDICTED: reticuline oxidase-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|225444139|ref|XP_002268606.1| PREDICTED: reticuline oxidase-like protein-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449433535|ref|XP_004134553.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] gi|449506758|ref|XP_004162840.1| PREDICTED: reticuline oxidase-like protein-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query570
TAIR|locus:2121544539 AT4G20840 [Arabidopsis thalian 0.933 0.987 0.644 4.5e-185
TAIR|locus:2121539570 AT4G20830 [Arabidopsis thalian 0.942 0.942 0.630 2e-184
TAIR|locus:2025452541 AT1G01980 [Arabidopsis thalian 0.898 0.946 0.619 2e-175
TAIR|locus:2027362536 AT1G11770 [Arabidopsis thalian 0.882 0.938 0.618 3.3e-173
TAIR|locus:2204554533 AT1G30740 [Arabidopsis thalian 0.910 0.973 0.570 1.7e-160
TAIR|locus:2204604527 AT1G30700 [Arabidopsis thalian 0.903 0.977 0.546 5.4e-150
TAIR|locus:2204614531 AT1G30710 [Arabidopsis thalian 0.910 0.977 0.495 2.4e-138
TAIR|locus:505006170527 AT1G34575 [Arabidopsis thalian 0.908 0.982 0.504 5.1e-138
TAIR|locus:2204634526 AT1G30730 [Arabidopsis thalian 0.907 0.982 0.477 2e-134
TAIR|locus:2204624527 AT1G30720 [Arabidopsis thalian 0.908 0.982 0.481 4.8e-133
TAIR|locus:2121544 AT4G20840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1795 (636.9 bits), Expect = 4.5e-185, P = 4.5e-185
 Identities = 346/537 (64%), Positives = 412/537 (76%)

Query:     3 MMKISTLCSTSFRLSTILLVLCFFNFPITRAASDSAYESFLQCLTQQTNSSDQQISNIVV 62
             M+   T  S  F +   L+ L FF+      +SDS YESF+QC + +T S   QI++ V 
Sbjct:     1 MIATQTFVSVFFFVF-FLVSLPFFS-SAAPPSSDSIYESFVQCFSDKTKSPQAQITDNVF 58

Query:    63 TQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQLKIRSGG 122
             ++TN S++SVLRAYIRN RFN SST KP +I+TP  + HVSAAV CSK + F LKIRSGG
Sbjct:    59 SRTNPSFSSVLRAYIRNGRFNTSSTPKPAIIVTPRSDIHVSAAVTCSKSLNFLLKIRSGG 118

Query:   123 HDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPA 182
             HDYEGLSYISD+PFFILDM NLR + VD+ D+SAW+ AGATLGE+YYRIW+KSK+HG+PA
Sbjct:   119 HDYEGLSYISDKPFFILDMSNLRDVSVDIADQSAWISAGATLGEVYYRIWEKSKVHGFPA 178

Query:   183 GVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGG 242
             GVCPTV            NMLRKFGLS DN++DAKIVDV G+ILDRK+MGEDLFWAI GG
Sbjct:   179 GVCPTVGVGGHISGGGYGNMLRKFGLSVDNLIDAKIVDVNGQILDRKSMGEDLFWAISGG 238

Query:   243 GGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATDVVYKWQLVAPATDDNLFMRMLLQ 302
             GGASFGVVL YK+KLVPVPETVTVFR E+ +   A D+V+KWQ V P TD NLF+RML+Q
Sbjct:   239 GGASFGVVLGYKVKLVPVPETVTVFRVEKYMDSGAVDMVHKWQSVGPKTDRNLFLRMLIQ 298

Query:   303 PVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSWIQSVLWWANFDN 362
             PVTR K  TVRA++VAL+LG A+ +V LL K+FPEL LKKEN  EM+W QS LWW N  N
Sbjct:   299 PVTRKKVKTVRATVVALFLGRAEEVVALLGKEFPELSLKKENCSEMTWFQSALWWDNRVN 358

Query:   363 GTS--PNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMELGKIGLVFNPYGGKM 420
              T   P V LDR+L+ A+F KRKSDYV   IP+  +  L+K+M ELGKIGLVFNPYGGKM
Sbjct:   359 PTQIDPKVFLDRNLDRANFGKRKSDYVASEIPRDGIESLFKKMTELGKIGLVFNPYGGKM 418

Query:   421 AEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAY 480
             AE+  + T FPHR+  LFKIQYS++W +   EIE+  L+QA  LYSFMT FVSK+PR+AY
Sbjct:   419 AEVTVNATPFPHRS-KLFKIQYSVTWQENSVEIEKGFLNQANVLYSFMTGFVSKNPRNAY 477

Query:   481 LNYRDVDIGINHHGEDSYAEGKVYGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPT 537
             LNYRDVDIG+N HG +SY EG+VYG KYF  NFDRLVKVKT  DP+NFFRNEQSIPT
Sbjct:   478 LNYRDVDIGVNDHGTNSYEEGEVYGRKYFGDNFDRLVKVKTAADPDNFFRNEQSIPT 534
GO:0003824 "catalytic activity" evidence=IEA
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005886 "plasma membrane" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
TAIR|locus:2121539 AT4G20830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2025452 AT1G01980 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027362 AT1G11770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204554 AT1G30740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204604 AT1G30700 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204614 AT1G30710 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006170 AT1G34575 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204634 AT1G30730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204624 AT1G30720 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.21.3LOW CONFIDENCE prediction!
3rd Layer1.21.3.3LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
pfam01565139 pfam01565, FAD_binding_4, FAD binding domain 1e-24
COG0277459 COG0277, GlcD, FAD/FMN-containing dehydrogenases [ 3e-21
pfam0803145 pfam08031, BBE, Berberine and berberine like 1e-18
>gnl|CDD|216574 pfam01565, FAD_binding_4, FAD binding domain Back     alignment and domain information 
 Score = 99.2 bits (248), Expect = 1e-24
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 3/139 (2%)

Query: 90  PTVIITPLQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNL-RSID 148
           P  ++ P  E  V+A V  + + G  + +R GG    G + ++     +LD+  L   ++
Sbjct: 1   PAAVVRPESEEEVAAIVRLANENGLPVLVRGGGSSLLGDAVLTGG--VVLDLSRLNGILE 58

Query: 149 VDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGL 208
           +D +D +A VEAG TLG+L   +  K  L G   G      VGG ++  G G    ++GL
Sbjct: 59  IDPEDGTATVEAGVTLGDLVRALAAKGLLLGLEPGSGIPGTVGGAIATNGGGYGSERYGL 118

Query: 209 STDNVVDAKIVDVRGRILD 227
           + DNV+  ++V   G ++ 
Sbjct: 119 TRDNVLSLEVVLADGEVVR 137

This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. Length = 139
>gnl|CDD|223354 COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 570
PLN02441525 cytokinin dehydrogenase 100.0
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 100.0
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 100.0
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 100.0
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 100.0
PLN02805555 D-lactate dehydrogenase [cytochrome] 100.0
TIGR01676541 GLDHase galactonolactone dehydrogenase. This model 100.0
PRK11230499 glycolate oxidase subunit GlcD; Provisional 99.97
KOG1231505 consensus Proteins containing the FAD binding doma 99.97
PRK11282352 glcE glycolate oxidase FAD binding subunit; Provis 99.97
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 99.96
PLN02465573 L-galactono-1,4-lactone dehydrogenase 99.96
PF01565139 FAD_binding_4: FAD binding domain This is only a s 99.94
KOG4730518 consensus D-arabinono-1, 4-lactone oxidase [Defens 99.92
PRK13905298 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.9
PRK11183564 D-lactate dehydrogenase; Provisional 99.88
PRK12436305 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.84
TIGR00179284 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.84
PRK14652302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.83
PRK13906307 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
PRK13903363 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.82
KOG1233613 consensus Alkyl-dihydroxyacetonephosphate synthase 99.79
PRK14649295 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.77
KOG1232511 consensus Proteins containing the FAD binding doma 99.77
PRK14653297 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.66
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.61
COG0812291 MurB UDP-N-acetylmuramate dehydrogenase [Cell enve 99.61
PRK14650302 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.57
KOG1262543 consensus FAD-binding protein DIMINUTO [General fu 99.57
PRK00046334 murB UDP-N-acetylenolpyruvoylglucosamine reductase 99.57
PRK14648354 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.52
PRK14651273 UDP-N-acetylenolpyruvoylglucosamine reductase; Pro 99.33
PRK13904257 murB UDP-N-acetylenolpyruvoylglucosamine reductase 98.99
PF00941171 FAD_binding_5: FAD binding domain in molybdopterin 95.06
PRK09799258 putative oxidoreductase; Provisional 94.33
PRK09971291 xanthine dehydrogenase subunit XdhB; Provisional 93.51
TIGR03312257 Se_sel_red_FAD probable selenate reductase, FAD-bi 92.71
TIGR02963467 xanthine_xdhA xanthine dehydrogenase, small subuni 91.97
TIGR03195321 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta s 89.79
TIGR03199264 pucC xanthine dehydrogenase C subunit. This gene h 87.65
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 87.39
PLN00107257 FAD-dependent oxidoreductase; Provisional 82.2
PLN02906 1319 xanthine dehydrogenase 81.05
COG4630493 XdhA Xanthine dehydrogenase, iron-sulfur cluster a 80.1
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information 
Probab=100.00  E-value=2.4e-38  Score=344.70  Aligned_cols=188  Identities=22%  Similarity=0.300  Sum_probs=169.2

Q ss_pred             ccCCCCCCCccEEEecCCHHHHHHHHHHHH--HcCCeEEEEeCCCCCCCCCccCCCCeEEEEccCCcc-------EEEeC
Q 043104           81 RFNLSSTLKPTVIITPLQEAHVSAAVICSK--QVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRS-------IDVDV  151 (570)
Q Consensus        81 r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~--~~~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~-------i~vd~  151 (570)
                      .|.......|.+|++|+|++||+++|++|+  ++++++++||+||++.|.+...+  |++|||++||+       +++|.
T Consensus        56 d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~~~--GivIdms~Ln~i~~~~~ii~vd~  133 (525)
T PLN02441         56 DFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQAPG--GVVVDMRSLRGGVRGPPVIVVSG  133 (525)
T ss_pred             CcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccCCC--eEEEECCCCCCcCccCceEEEcC
Confidence            488777889999999999999999999997  67999999999999999887754  99999999999       37889


Q ss_pred             CCCeEEEcCCCCHHHHHHHHHhcCCcCeec-CCCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-cc
Q 043104          152 KDESAWVEAGATLGELYYRIWQKSKLHGYP-AGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RK  229 (570)
Q Consensus       152 ~~~~v~V~aG~~~~~l~~~l~~~g~~l~~~-~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~~  229 (570)
                      +..+|+|++|++|.++++++.++|  ++.+ .+.+..++|||.+++||+|..+.+||..+|||++++||+++|++++ ++
T Consensus       134 ~~~~VtV~aG~~~~dv~~~l~~~G--laP~~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~leVVtadGevv~~s~  211 (525)
T PLN02441        134 DGPYVDVSGGELWIDVLKATLKHG--LAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELDVVTGKGEVVTCSP  211 (525)
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHCC--CccCCccccCceEEeEEcCCCCccccccccCcHHHhEEEEEEEeCCceEEEeCC
Confidence            999999999999999999999987  5433 3455688999999999999999999999999999999999999999 77


Q ss_pred             CCCchhhHHhhccCCCceEEEEeeEEeeeecCceEEEEEEEecc
Q 043104          230 AMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLL  273 (570)
Q Consensus       230 ~~~~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~  273 (570)
                      .+|+|||||+||| +|+|||||++|+|++|+|+.+.++.+.+..
T Consensus       212 ~~n~DLF~Av~Gg-lG~fGIIT~atlrL~Pap~~v~~~~~~y~~  254 (525)
T PLN02441        212 TQNSDLFFAVLGG-LGQFGIITRARIALEPAPKRVRWIRVLYSD  254 (525)
T ss_pred             CCChhHHHhhccC-CCCcEEEEEEEEEEEecCCceEEEEEEcCC
Confidence            8899999999998 579999999999999999977666666653

>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information
>TIGR01676 GLDHase galactonolactone dehydrogenase Back     alignment and domain information
>PRK11230 glycolate oxidase subunit GlcD; Provisional Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PLN02465 L-galactono-1,4-lactone dehydrogenase Back     alignment and domain information
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms] Back     alignment and domain information
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK11183 D-lactate dehydrogenase; Provisional Back     alignment and domain information
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase Back     alignment and domain information
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only] Back     alignment and domain information
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only] Back     alignment and domain information
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional Back     alignment and domain information
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain Back     alignment and domain information
>PRK09799 putative oxidoreductase; Provisional Back     alignment and domain information
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional Back     alignment and domain information
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit Back     alignment and domain information
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit Back     alignment and domain information
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit Back     alignment and domain information
>TIGR03199 pucC xanthine dehydrogenase C subunit Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PLN02906 xanthine dehydrogenase Back     alignment and domain information
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 1e-125
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 1e-125
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 1e-120
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-90
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 2e-90
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-90
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 2e-90
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-89
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 3e-89
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 3e-89
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 9e-19
3rj8_A473 Crystal Structure Of Carbohydrate Oxidase From Micr 2e-18
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-18
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 8e-15
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 5e-14
1zr6_A503 The Crystal Structure Of An Acremonium Strictum Glu 8e-13
2bvf_A459 Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase Fr 8e-13
3hsu_A503 Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-H 1e-11
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure 
Iteration: 1

 Score =  446 bits (1148), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 226/499 (45%), Positives = 319/499 (63%), Gaps = 21/499 (4%)
Query: 42  FLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAH 101
           FL CLT+            +  +++ +YASV  + +RN +F    T+KP  IITP   +H
Sbjct: 13  FLTCLTKDIPPRQ------LYAKSSPAYASVWSSTVRNIKFLSDKTVKPLYIITPTNASH 66
Query: 102 VSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRP--FFILDMFNLRSIDVDVKDESAWVE 159
           + AAV+C ++ G ++++RSGGHDYEGLSY S++P  F ++DM  +R++ +D K  +AWV+
Sbjct: 67  IQAAVVCGRRHGMRIRVRSGGHDYEGLSYRSEKPEPFAVVDMNKMRAVSIDGKAATAWVD 126
Query: 160 AGATLGELYYRIWQKSKLHGYPAGVCPTVXXXXXXXXXXXXNMLRKFGLSTDNVVDAKIV 219
           +GA LG+LYY I + S   G+PAGVC T+             +LRK+G + DNV+DAK+V
Sbjct: 127 SGAQLGDLYYGIAKASPKLGFPAGVCTTIGVGGHFSGGGFGMLLRKYGTAADNVIDAKVV 186
Query: 220 DVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLAENATD 279
           D +GR+LDRKAMGED FWAIRGGGG SFG+V ++++KL+PVP  VTVF+  + + E A D
Sbjct: 187 DAQGRLLDRKAMGEDHFWAIRGGGGESFGIVASWQVKLLPVPPKVTVFQVHKGIKEGAID 246
Query: 280 VVYKWQLVAPATDDNLFMRMLLQPVTRNKKPTVRASIVALYLGGADSLVTLLAKDFPELG 339
           +V KWQ VAPA  D+L +R++             A   ALYLG    LV L+   FPELG
Sbjct: 247 LVTKWQTVAPALPDDLMIRIMAM--------GQGAMFEALYLGTCKDLVLLMTARFPELG 298
Query: 340 LKKENVMEMSWIQSVLWWANFDNGTSPNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLL 399
           +   +  EM+WI+SV +      GT  + LL+R  N   F K KSDYV +PIPK     +
Sbjct: 299 MNATHCKEMTWIESVPYIPMGPKGTVRD-LLNRTSNIKAFGKYKSDYVLEPIPKSDWEKI 357
Query: 400 WKQMMELGKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLS 459
           +  +++ G   ++ +PYGG +A +P S T FP R+G LF IQY + W   G      + +
Sbjct: 358 FTWLVKPGAGVMIMDPYGGGIASVPESATPFPRRSGVLFNIQYVVYWFGEGAAALPTQWT 417
Query: 460 QATSLYSFMTPFVSKSPRSAYLNYRDVDIGINH--HGEDSYAEGKVYGEKYFNGNFDRLV 517
           +   +Y FMTP+VSK+PR AY+NYRD+D+G+N       +YA GKV+GEKYF GNF+RL 
Sbjct: 418 R--DIYDFMTPYVSKNPRQAYVNYRDLDLGVNQVVGNVSTYASGKVWGEKYFKGNFERLA 475
Query: 518 KVKTMVDPENFFRNEQSIP 536
           + K  +DPE++FRNEQSIP
Sbjct: 476 RTKGKIDPEDYFRNEQSIP 494
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3RJ8|A Chain A, Crystal Structure Of Carbohydrate Oxidase From Microdochium Nivale Length = 473 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure
>pdb|1ZR6|A Chain A, The Crystal Structure Of An Acremonium Strictum Glucooligosaccharide Oxidase Reveals A Novel Flavinylation Length = 503 Back     alignment and structure
>pdb|2BVF|A Chain A, Crystal Structure Of 6-Hydoxy-D-Nicotine Oxidase From Arthrobacter Nicotinovorans. Crystal Form 3 (P1) Length = 459 Back     alignment and structure
>pdb|3HSU|A Chain A, Functional Roles Of The 6-S-Cysteinyl, 8 Alpha-N1-Histidyl Fad In Glucooligosaccharide Oxidase From Acremonium Strictum Length = 503 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query570
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 0.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 0.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 1e-171
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 1e-170
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 1e-168
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 1e-167
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-164
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 1e-164
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 1e-109
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 7e-47
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 3e-37
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 8e-20
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 1e-17
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 6e-11
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 3e-10
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 8e-07
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 9e-06
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  582 bits (1502), Expect = 0.0
 Identities = 233/519 (44%), Positives = 332/519 (63%), Gaps = 16/519 (3%)

Query: 37  SAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITP 96
           +  E+FL+C ++   ++      +V TQ +  Y S+L + I+N RF   +T KP VI+TP
Sbjct: 2   NPRENFLKCFSKHIPNNVA-NPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTP 60

Query: 97  LQEAHVSAAVICSKQVGFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESA 156
              +H+ A ++CSK+VG Q++ RSGGHD EG+SYIS  PF ++D+ N+ SI +DV  ++A
Sbjct: 61  SNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTA 120

Query: 157 WVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDA 216
           WVEAGATLGE+YY I +K++   +P G CPTVGVGGH SGGGYG ++R +GL+ DN++DA
Sbjct: 121 WVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDA 180

Query: 217 KIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLL-AE 275
            +V+V G++LDRK+MGEDLFWAIRGGGG +FG++ A+KIKLV VP   T+F  ++ +   
Sbjct: 181 HLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH 240

Query: 276 NATDVVYKWQLVAPATDDNLFMRMLLQPVTRN-----KKPTVRASIVALYLGGADSLVTL 330
               +  KWQ +A   D +L +                K TV     +++ GG DSLV L
Sbjct: 241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDL 300

Query: 331 LAKDFPELGLKKENVMEMSWIQSVLWWANFDNGTSPN----VLLDRDLNSADFLKRKSDY 386
           + K FPELG+KK +  E SWI + ++++   N  + N    +LLDR          K DY
Sbjct: 301 MNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDY 360

Query: 387 VQKPIPKYSLNLLWKQMMEL--GKIGLVFNPYGGKMAEIPASETAFPHRAGNLFKIQYSI 444
           V+KPIP+ ++  + +++ E   G    V  PYGG M EI  S   FPHRAG ++++ Y+ 
Sbjct: 361 VKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTA 420

Query: 445 SWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIG-INHHGEDSYAEGKV 503
           SW        E  ++   S+Y+F TP+VS++PR AYLNYRD+D+G  NH   ++Y + ++
Sbjct: 421 SWEKQED--NEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI 478

Query: 504 YGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPRSD 542
           +GEKYF  NF+RLVKVKT VDP NFFRNEQSIP  P   
Sbjct: 479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPPHH 517
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Length = 534 Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* Length = 481 Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Length = 422 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Length = 561 Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Length = 540 Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Length = 520 Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Length = 560 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query570
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 100.0
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 100.0
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 100.0
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 100.0
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 100.0
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 100.0
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 100.0
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 100.0
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 100.0
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 100.0
3pm9_A476 Putative oxidoreductase; putative D-2-hydroxygluta 99.98
2uuu_A584 Alkyldihydroxyacetonephosphate synthase; transfera 99.97
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 99.97
2i0k_A561 Oxidoreductase; MIX alpha beta, covalent FAD, flav 99.96
1e8g_A560 Vanillyl-alcohol oxidase; oxidoreductase, flavoenz 99.96
3js8_A540 Cholesterol oxidase; cholsterol, organic solvent s 99.95
1f0x_A571 DLDH, D-lactate dehydrogenase; oxidoreductase; HET 99.95
3tx1_A322 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
3i99_A357 UDP-N-acetylenolpyruvoylglucosamine reductase; str 99.91
1hsk_A326 UDP-N-acetylenolpyruvoylglucosamine reductase; pep 99.89
1uxy_A340 MURB, uridine diphospho-N-acetylenolpyruvylglucosa 99.89
2gqt_A268 UDP-N-acetylenolpyruvylglucosamine reductase; pept 99.85
2yvs_A219 Glycolate oxidase subunit GLCE; oxidoreductase; 2. 99.78
1ffv_C287 CUTM, flavoprotein of carbon monoxide dehydrogenas 97.89
1n62_C288 Carbon monoxide dehydrogenase medium chain; CODH, 97.19
2w3s_A462 Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2 96.82
1t3q_C288 Quinoline 2-oxidoreductase medium subunit; QOR, mo 92.76
3hrd_C296 Nicotinate dehydrogenase FAD-subunit; selenium lig 91.85
3nvz_B305 Xanthine dehydrogenase/oxidase; hydroxylase, homod 91.75
1rm6_B324 4-hydroxybenzoyl-COA reductase beta subunit; xanth 85.2
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 80.7
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=4.9e-98  Score=819.89  Aligned_cols=501  Identities=47%  Similarity=0.868  Sum_probs=442.2

Q ss_pred             CcccCHHHHhcccCCCCCCCccceEEcCCCcchHHHHHhhhhccccCCCCCCCccEEEecCCHHHHHHHHHHHHHcCCeE
Q 043104           37 SAYESFLQCLTQQTNSSDQQISNIVVTQTNSSYASVLRAYIRNARFNLSSTLKPTVIITPLQEAHVSAAVICSKQVGFQL  116 (570)
Q Consensus        37 ~~~~~~~~cl~~~~~~~~~~~~~~v~~p~~~~y~~~~~~~~~n~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~~~~~  116 (570)
                      .+.++|++||+.++.++. .+++.|++|+|+.|++++.++++|.||+....++|.+||+|+|++||+++|++|+++++|+
T Consensus         2 ~~~~~f~~c~~~~~~~~~-~~~~~v~~p~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v   80 (518)
T 3vte_A            2 NPRENFLKCFSKHIPNNV-ANPKLVYTQHDQLYMSILNSTIQNLRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQI   80 (518)
T ss_dssp             CHHHHHHHHHHHHCCC-----CCCEECTTSTTHHHHHHHTCCBGGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEE
T ss_pred             ChhHHHHHHHHhcCCccC-CCCceEECCCCcchHHHHhhhhcccccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcE
Confidence            467789999998876665 7889999999999999998999999999988999999999999999999999999999999


Q ss_pred             EEEeCCCCCCCCCccCCCCeEEEEccCCccEEEeCCCCeEEEcCCCCHHHHHHHHHhcCCcCeecCCCCCcceecccccc
Q 043104          117 KIRSGGHDYEGLSYISDRPFFILDMFNLRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHLSG  196 (570)
Q Consensus       117 ~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~~~~l~~~l~~~g~~l~~~~G~~~~vgvgG~~~g  196 (570)
                      ++|||||++.|.+.....++++|||++|++|++|+++++|+||||+++++|++++.++|.++++++|.|++|||||+++|
T Consensus        81 ~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i~vd~~~~~v~V~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~g  160 (518)
T 3vte_A           81 RTRSGGHDAEGMSYISQVPFVVVDLRNMHSIKIDVHSQTAWVEAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSG  160 (518)
T ss_dssp             EEESSCCCTTCTTTCCSSSEEEEECTTCCCEEEETTTTEEEEETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHT
T ss_pred             EEECCCcCCCCCccCCCCCeEEEECCCCceeEEeCCCCEEEEeCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCC
Confidence            99999999998875332359999999999999999999999999999999999999998789999999999999999999


Q ss_pred             CccCCCcccccchhhceeEEEEEccCceEeeccCCCchhhHHhhccCCCceEEEEeeEEeeeecCceEEEEEEEecch-h
Q 043104          197 GGYGNMLRKFGLSTDNVVDAKIVDVRGRILDRKAMGEDLFWAIRGGGGASFGVVLAYKIKLVPVPETVTVFRAERLLA-E  275 (570)
Q Consensus       197 Gg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~~~~~~~DLfwa~rGgggg~fGVVt~~t~kl~p~p~~~~~~~~~~~~~-~  275 (570)
                      ||+|+++++||+++|+|++++||++||++++.+.+++|||||+||||+|+|||||+++|||+|.|+.++.|.+.++++ +
T Consensus       161 Gg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~  240 (518)
T 3vte_A          161 GGYGALMRNYGLAADNIIDAHLVNVDGKVLDRKSMGEDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIH  240 (518)
T ss_dssp             CCCCTTHHHHCCGGGGEEEEEEECTTCCEECHHHHCHHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHH
T ss_pred             CCCccccCCCCchhheEEEEEEEccCCeEEEeeccccchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHH
Confidence            999999999999999999999999999999854568999999999867899999999999999999888888887765 5


Q ss_pred             hHHHHHHHHHHhcccCCccceEEEEEeecc----C-CCCCeEEEEEEEEEecCcchhhhhhhccCccCCCcccceeeecH
Q 043104          276 NATDVVYKWQLVAPATDDNLFMRMLLQPVT----R-NKKPTVRASIVALYLGGADSLVTLLAKDFPELGLKKENVMEMSW  350 (570)
Q Consensus       276 ~a~~~~~~~~~~~~~~p~~l~~~~~~~~~~----~-~g~~~~~~~~~~~~~G~~~~~~~~~~~~f~~lg~~~~~~~~~~~  350 (570)
                      ++.+++.+||++++++|+++++++.+...+    . .++.++.+.+.++|+|+.+++.++|.+.|++++....+|.+|+|
T Consensus       241 ~~~~~l~~~~~~~~~~p~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w  320 (518)
T 3vte_A          241 GLVKLFNKWQNIAYKYDKDLVLMTHFITKNITDNHGKNKTTVHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSW  320 (518)
T ss_dssp             HHHHHHHHHHHHGGGSCTTEEEEEEEEEESCC-------CEEEEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECH
T ss_pred             HHHHHHHHHHHHHHcCCHhHeEEEEEcccCCCCCCCcCCCceEEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecch
Confidence            578999999999999999999998877532    1 12234567889999999999999999888999988889999999


Q ss_pred             HHHHHHHhhcCCC-CC---ccccccCCCCCccccccccccccCCCCHHHHHHHHHHHHHc--CceEEEEeecCCccccCC
Q 043104          351 IQSVLWWANFDNG-TS---PNVLLDRDLNSADFLKRKSDYVQKPIPKYSLNLLWKQMMEL--GKIGLVFNPYGGKMAEIP  424 (570)
Q Consensus       351 ~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~k~ks~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~GG~~~~v~  424 (570)
                      ++++.++++++.+ .+   ++.++++......|||.||+|+++++++++|+.+++.+.+.  +.+.+.+++|||+|++++
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~ks~~~~~~l~~~~i~~l~~~~~~~~~~~~~v~~~~~GGa~~~v~  400 (518)
T 3vte_A          321 IDTTIFYSGVVNFNTANFKKEILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGAGMYVLYPYGGIMEEIS  400 (518)
T ss_dssp             HHHHHHTSSSCCC-----CGGGGGCTTCSCCBEEEEEEEEESSCCCHHHHHHHHHGGGGSCTTTEEEEEEECCGGGGTSC
T ss_pred             hhhhhhhhcCCccCCccchhhhhccCCcCcccceeeechhcccCCCHHHHHHHHHHHHhCCCCCeEEEEeecCccccCCC
Confidence            9999998766543 34   56666665545567899999999999999999999988763  357899999999999999


Q ss_pred             CCCCCCCccCCceEEEEEEEEeCCCCchHHHHHHHHHHHHHhhhcCcccCCCCcccccCCCCccC-CCCCCCCccccchh
Q 043104          425 ASETAFPHRAGNLFKIQYSISWSDPGTEIEEDRLSQATSLYSFMTPFVSKSPRSAYLNYRDVDIG-INHHGEDSYAEGKV  503 (570)
Q Consensus       425 ~~~taf~hR~~~~~~i~~~~~W~~~~~~~~~~~~~wi~~~~~~~~p~~~~~~~~~YvNy~d~dlg-~~~~~~~~~~~~~~  503 (570)
                      +++||||||++++|.+++.+.|.++  +.++++++|+++++++|.||++++++++|+||+|.|++ .+...+++|++++.
T Consensus       401 ~~~TAf~hR~~~~~~~~~~~~w~~~--~~~~~~~~w~~~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~~~~~~~~~~~~  478 (518)
T 3vte_A          401 ESAIPFPHRAGIMYELWYTASWEKQ--EDNEKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLDLGKTNHASPNNYTQARI  478 (518)
T ss_dssp             TTSSSCCCCTTCCEEEEEEEEECCT--TTHHHHHHHHHHHHHHTGGGSCCTTCCCCTTSCCGGGCCCCTTSCCCHHHHHH
T ss_pred             CCCCcccccCcceEEEEEEEecCCc--chhHHHHHHHHHHHHHhccccCCCCccccccCCCccccccccccccchhhhhh
Confidence            9999999999779999999999765  44578899999999999999887889999999999987 54345678889999


Q ss_pred             hhhhhccccHHHHHHhhhhcCcCCcccCCCCCCCCCC
Q 043104          504 YGEKYFNGNFDRLVKVKTMVDPENFFRNEQSIPTQPR  540 (570)
Q Consensus       504 ~g~~Yfg~N~~RL~~IK~kyDP~n~F~~~qsI~~~~~  540 (570)
                      |+++|||+||+||++||+||||+|||+++|||||+++
T Consensus       479 w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          479 WGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            9999999999999999999999999999999999865
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris} Back     alignment and structure
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A* Back     alignment and structure
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A* Back     alignment and structure
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP} Back     alignment and structure
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1 Back     alignment and structure
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes} Back     alignment and structure
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae} Back     alignment and structure
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1 Back     alignment and structure
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A* Back     alignment and structure
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A* Back     alignment and structure
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus} Back     alignment and structure
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C* Back     alignment and structure
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C* Back     alignment and structure
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A* Back     alignment and structure
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3 Back     alignment and structure
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri} Back     alignment and structure
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B* Back     alignment and structure
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 570
d1w1oa2206 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Ma 1e-16
d2i0ka2216 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibac 6e-14
d1wvfa2236 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cres 3e-04
d1e8ga2268 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fung 4e-04
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

 Score = 76.5 bits (187), Expect = 1e-16
 Identities = 35/186 (18%), Positives = 63/186 (33%), Gaps = 10/186 (5%)

Query: 82  FNLSSTLKPTVIITPLQEAHVSAAV-ICSKQVGFQLKI--RSGGHDYEGLSYISDRPFFI 138
           F   ++  P  ++ P     + A +   +   G+   I  R  GH   G ++        
Sbjct: 22  FGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPGGVVVN 81

Query: 139 LDMFN----LRSIDVDVKDESAWVEAGATLGELYYRIWQKSKLHGYPAGVCPTVGVGGHL 194
           +           I+V                ++      +             + VGG L
Sbjct: 82  MASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVAPRSW-TDYLYLTVGGTL 140

Query: 195 SGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-RKAMGEDLFWAIRGGGGASFGVVLAY 253
           S  G      + G    NV++  ++   G ++   K +  DLF A+ GG G  FGV+   
Sbjct: 141 SNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCSKQLNADLFDAVLGGLG-QFGVITRA 199

Query: 254 KIKLVP 259
           +I + P
Sbjct: 200 RIAVEP 205
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Length = 216 Back     information, alignment and structure
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Length = 236 Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Length = 268 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query570
d1w1oa2206 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 100.0
d1wvfa2236 Flavoprotein subunit of p-cresol methylhydroxylase 100.0
d2i0ka2216 Cholesterol oxidase {Brevibacterium sterolicum [Ta 99.96
d1e8ga2268 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 99.96
d1hska1194 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.83
d1uxya1198 Uridine diphospho-N-Acetylenolpyruvylglucosamine r 99.81
d1f0xa2265 D-lactate dehydrogenase {Escherichia coli [TaxId: 99.75
d1ffvc2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 93.46
d1t3qc2176 Quinoline 2-oxidoreductase medium subunit QorM {Ps 92.88
d1v97a6223 Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [ 92.26
d1jroa4167 Xanthine dehydrogenase chain A, domain 3 {Rhodobac 92.16
d1n62c2177 Carbon monoxide (CO) dehydrogenase flavoprotein, N 91.63
d1rm6b2216 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, 91.19
>d1w1oa2 d.145.1.1 (A:40-245) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAD-binding/transporter-associated domain-like
superfamily: FAD-binding/transporter-associated domain-like
family: FAD-linked oxidases, N-terminal domain
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=6.6e-37  Score=296.28  Aligned_cols=176  Identities=19%  Similarity=0.319  Sum_probs=159.6

Q ss_pred             cccCCCCCCCccEEEecCCHHHHHHHHHHHHHc---CCeEEEEeCCCCCCCCCccCCCCeEEEEccCCccE------EEe
Q 043104           80 ARFNLSSTLKPTVIITPLQEAHVSAAVICSKQV---GFQLKIRSGGHDYEGLSYISDRPFFILDMFNLRSI------DVD  150 (570)
Q Consensus        80 ~r~~~~~~~~P~~vv~P~s~~dV~~~V~~a~~~---~~~~~vrggGh~~~g~s~~~~~~gvvIdl~~l~~i------~vd  150 (570)
                      ..|.......|.+|++|+|++||+++|++|+++   ++|+++|||||++.|.+...+  +++|||++||+|      ++|
T Consensus        20 ~d~~~~~~~~P~~Vv~P~s~~ev~~iv~~a~~~~~~~~~v~~rggGhs~~g~s~~~~--~ividl~~l~~i~~~~~~~id   97 (206)
T d1w1oa2          20 TDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQAFAPG--GVVVNMASLGDAAAPPRINVS   97 (206)
T ss_dssp             CCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSSTTCCTT--SEEEEGGGGGCSSSSCSEEEC
T ss_pred             ECcccCcccCCCEEEEcCCHHHHHHHHHHHHhCCCCCeEEEEECCCCCcccCcccCC--CEeeeccccceeeeceeEEEe
Confidence            346666678999999999999999999999997   699999999999998887654  899999999985      799


Q ss_pred             CCCCeEEEcCCCCHHHHHHHHHhcCCcCeecC-CCCCcceeccccccCccCCCcccccchhhceeEEEEEccCceEee-c
Q 043104          151 VKDESAWVEAGATLGELYYRIWQKSKLHGYPA-GVCPTVGVGGHLSGGGYGNMLRKFGLSTDNVVDAKIVDVRGRILD-R  228 (570)
Q Consensus       151 ~~~~~v~V~aG~~~~~l~~~l~~~g~~l~~~~-G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~~vV~a~G~iv~-~  228 (570)
                      ++..+++||+|+++.||++++.++|  +.++. +....++|||++++||+|..+++||..+|+|+++|+|++||++++ +
T Consensus        98 ~~~~~v~v~aG~~~~~l~~~l~~~G--l~~~~~~~~~~~tvGG~i~~~g~g~~s~~~G~~~d~v~~~evV~~~G~~~~~s  175 (206)
T d1w1oa2          98 ADGRYVDAGGEQVWIDVLRASLARG--VAPRSWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLEMDVITGHGEMVTCS  175 (206)
T ss_dssp             TTSSEEEEETTCBHHHHHHHHHTTT--EEESCCCSSCCSBHHHHHTTCCCSTTHHHHCCGGGSEEEEEEEETTSCEEEEE
T ss_pred             cCCCEEEEEcceehhhhhhhhhccc--cccccCCccCceEEeeeeccccceeccccccceeeeeeEEEEEcCCCcEEEEC
Confidence            9999999999999999999999987  55553 445778999999999999999999999999999999999999998 7


Q ss_pred             cCCCchhhHHhhccCCCceEEEEeeEEeeeec
Q 043104          229 KAMGEDLFWAIRGGGGASFGVVLAYKIKLVPV  260 (570)
Q Consensus       229 ~~~~~DLfwa~rGgggg~fGVVt~~t~kl~p~  260 (570)
                      +.+|+|||||+||+ +|+|||||++|||++|+
T Consensus       176 ~~~~~dl~~a~~g~-~G~~Giit~~tl~l~PA  206 (206)
T d1w1oa2         176 KQLNADLFDAVLGG-LGQFGVITRARIAVEPA  206 (206)
T ss_dssp             SSSSHHHHHHHTTC-TTCSEEEEEEEEEEEEC
T ss_pred             CCCCHHHHHHHhhC-CCccEeEEEEEEEEEcC
Confidence            77899999999998 57999999999999995
>d1wvfa2 d.145.1.1 (A:7-242) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2i0ka2 d.145.1.1 (A:58-273) Cholesterol oxidase {Brevibacterium sterolicum [TaxId: 1702]} Back     information, alignment and structure
>d1e8ga2 d.145.1.1 (A:6-273) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1hska1 d.145.1.2 (A:15-208) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1uxya1 d.145.1.2 (A:3-200) Uridine diphospho-N-Acetylenolpyruvylglucosamine reductase (MurB), N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0xa2 d.145.1.1 (A:9-273) D-lactate dehydrogenase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ffvc2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Hydrogenophaga pseudoflava [TaxId: 47421]} Back     information, alignment and structure
>d1t3qc2 d.145.1.3 (C:1-176) Quinoline 2-oxidoreductase medium subunit QorM {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1v97a6 d.145.1.3 (A:192-414) Xanthine oxidase, domain 3 (?) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1jroa4 d.145.1.3 (A:179-345) Xanthine dehydrogenase chain A, domain 3 {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase flavoprotein, N-terminal domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]} Back     information, alignment and structure
>d1rm6b2 d.145.1.3 (B:1-216) 4-hydroxybenzoyl-CoA reductase beta subunit HrcB, N-terminal domain {Thauera aromatica [TaxId: 59405]} Back     information, alignment and structure