Citrus Sinensis ID: 043105

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420------
MGSFKKHEAGSSTKDLKKPQQPLPREDTPLIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILSVKK
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccEEccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccEEEEEHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mgsfkkheagsstkdlkkpqqplpredtpligkpaplssqtkTFANVFIAIVGAGvlglpyafkrtgwLMGSLMIISVSALTFHCMMLLVHTrrklessehgftkinsfgdLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTStilgmsakgfyiwsclpfqlglnsiatlthlaplsifADVVDLAATAVVMVDEVVISLKQmpevaafgnLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVlgyfafgsetKDIITANLGAGFVSVLVQLGLCInlfftfplmmhpvyEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSsvccglgfvlPALFHLLVFKeemgwkgwfLDVGIVVVGVVFGVSGTWYALMEILSVKK
mgsfkkheagsstkdlkkpqqplpredtpligKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILSVKK
MGSFKKHEAGSSTKDLKKPQQPLPREDTPLIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFadvvdlaatavvmvdEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDvgivvvgvvfgvsgTWYALMEILSVKK
*****************************************KTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILS***
***************************************QTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLE*********NSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILSVKK
***********************PREDTPLIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILSVKK
**********************************APLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILSVKK
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MGSFKKHEAGSSTKDLKKPQQPLPREDTPLIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEILSVKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query426 2.2.26 [Sep-21-2011]
Q811P0477 Proton-coupled amino acid yes no 0.880 0.786 0.292 2e-37
Q4V8B1477 Proton-coupled amino acid yes no 0.892 0.796 0.294 2e-37
Q7Z2H8476 Proton-coupled amino acid yes no 0.870 0.779 0.303 5e-37
Q495N2470 Proton-coupled amino acid no no 0.892 0.808 0.281 3e-35
Q4KL91522 Proton-coupled amino acid N/A no 0.882 0.720 0.289 1e-34
Q6YBV0504 Proton-coupled amino acid no no 0.938 0.793 0.269 5e-31
Q10074656 Vacuolar amino acid trans yes no 0.868 0.564 0.275 1e-30
Q8CH36500 Proton-coupled amino acid no no 0.873 0.744 0.269 4e-30
Q495M3483 Proton-coupled amino acid no no 0.849 0.749 0.288 7e-30
Q8K4D3475 Proton-coupled amino acid no no 0.868 0.778 0.290 8e-28
>sp|Q811P0|S36A3_MOUSE Proton-coupled amino acid transporter 3 OS=Mus musculus GN=Slc36a3 PE=2 SV=1 Back     alignment and function desciption
 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 200/413 (48%), Gaps = 38/413 (9%)

Query: 42  KTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLV----HTRRKLE 97
           + F ++  + +G G LGLP A K  G L+G + ++++ ALT HCM +L+    H  ++L+
Sbjct: 54  QIFIHLLKSNIGTGFLGLPLAVKNAGLLVGPVSLLAIGALTVHCMDILLNCACHLTQRLQ 113

Query: 98  SSEHGFTKINSFGDLGFVVCGSI--------GRGIVDVLIILSQAGFCISYLMFIANTLV 149
            S   + +   +       C S         GR +V  L+I++Q GFC  Y MF+A+ L 
Sbjct: 114 RSFVNYEETTMYS---LETCPSPWLRTHSVWGRYVVSFLLIVTQLGFCSVYFMFLADNLQ 170

Query: 150 YFFR----TSTI------LGMSA---KGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVV 196
                   TS +      L M++     FY+ + LPF + L  I     L+  S  A + 
Sbjct: 171 QIMEEAHFTSNVCQPRQSLVMTSILDTRFYMLTILPFLILLVLIQNPQVLSIFSTLATIT 230

Query: 197 DLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKE 256
            L++ A++   E +I       +    N   F    G A++ FEG+GMVLPL+++M+  +
Sbjct: 231 TLSSLALIF--EYLIQTPHHSNLPLVANWKTFLLFFGTAIFTFEGVGMVLPLKSQMKSPQ 288

Query: 257 KFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFT 316
           +F  +L L ++F+  +Y+  G LGY  FG++T+  IT NL   ++   V+L   + +FFT
Sbjct: 289 QFPAVLYLGMSFVIFLYICLGTLGYMKFGTDTQASITLNLPICWLYQSVKLMYSVGIFFT 348

Query: 317 FPLMMHPVYEIVERRFKGGEYCLW-------LRWLLVFLVSLVAMSVPNFADFLSLVGSS 369
           + L  H   EI+           W       +R  LV L    A+ +P     +SLVGS 
Sbjct: 349 YALQFHVPAEIIVPYVVSRVSENWALFVDLTVRTALVCLTCFSAVLIPRLDLVISLVGSV 408

Query: 370 VCCGLGFVLPALFHLLVF-KEEMGWKGWFLDVGIVVVGVVFGVSGTWYALMEI 421
               L  ++P L  +  F  E +       D+ I ++G++  V GT+ AL E+
Sbjct: 409 SSSALAIIIPPLLEIATFYSENISCATIVKDIMISILGLLGCVLGTYQALYEM 461

Mus musculus (taxid: 10090)
>sp|Q4V8B1|S36A3_RAT Proton-coupled amino acid transporter 3 OS=Rattus norvegicus GN=Slc36a3 PE=2 SV=1 Back     alignment and function description
>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1 Back     alignment and function description
>sp|Q495N2|S36A3_HUMAN Proton-coupled amino acid transporter 3 OS=Homo sapiens GN=SLC36A3 PE=2 SV=2 Back     alignment and function description
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q6YBV0|S36A4_HUMAN Proton-coupled amino acid transporter 4 OS=Homo sapiens GN=SLC36A4 PE=1 SV=1 Back     alignment and function description
>sp|Q10074|AVT3_SCHPO Vacuolar amino acid transporter 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=avt3 PE=1 SV=1 Back     alignment and function description
>sp|Q8CH36|S36A4_MOUSE Proton-coupled amino acid transporter 4 OS=Mus musculus GN=Slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1 Back     alignment and function description
>sp|Q8K4D3|S36A1_MOUSE Proton-coupled amino acid transporter 1 OS=Mus musculus GN=Slc36a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
255572413433 amino acid transporter, putative [Ricinu 0.974 0.958 0.739 1e-180
224102785428 aromatic and neutral amino acid transpor 0.976 0.971 0.712 1e-173
224132448427 aromatic and neutral amino acid transpor 0.969 0.967 0.703 1e-171
225438450422 PREDICTED: proton-coupled amino acid tra 0.969 0.978 0.705 1e-168
449444417427 PREDICTED: proton-coupled amino acid tra 0.938 0.936 0.723 1e-165
21593378436 putative amino acid transport protein [A 0.981 0.958 0.684 1e-161
297827867413 amino acid transporter family protein [A 0.931 0.961 0.703 1e-160
15233742436 Transmembrane amino acid transporter fam 0.981 0.958 0.682 1e-160
30688867413 transmembrane amino acid transporter-lik 0.931 0.961 0.693 1e-159
224084123401 aromatic and neutral amino acid transpor 0.929 0.987 0.710 1e-159
>gi|255572413|ref|XP_002527144.1| amino acid transporter, putative [Ricinus communis] gi|223533504|gb|EEF35246.1| amino acid transporter, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 315/426 (73%), Positives = 358/426 (84%), Gaps = 11/426 (2%)

Query: 11  SSTKDLKKPQQPLPREDTPLIGKPA----------PLSSQTKTFANVFIAIVGAGVLGLP 60
            ++K  K P  P  +EDTPLI KP           PLSSQ+KTFANVFIAIVGAGVLGLP
Sbjct: 7   EASKTRKPPILPPAKEDTPLITKPNNNNNINDNGNPLSSQSKTFANVFIAIVGAGVLGLP 66

Query: 61  YAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSI 120
           YAFKRTGW+M  LM+ SV+ALT +CMMLLVHTRRKL+S    F+KINSFGDLGF VCGS+
Sbjct: 67  YAFKRTGWIMSLLMLFSVAALTHYCMMLLVHTRRKLQSLPGDFSKINSFGDLGFAVCGSV 126

Query: 121 GRGIVDVLIILSQAGFCISYLMFIANTLVYFFR-TSTILGMSAKGFYIWSCLPFQLGLNS 179
           GR + DV+I+LSQAGFC+ YL+FIANTL   F  +S I+G+SAK FYIW C PFQLGLNS
Sbjct: 127 GRFVADVMIVLSQAGFCVGYLIFIANTLANLFDMSSQIIGLSAKSFYIWGCFPFQLGLNS 186

Query: 180 IATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAF 239
           IATLTHLAPLSIFAD+VDL A  VV+V++++I +K  P+V AFG LSVFFYG+GVAVYAF
Sbjct: 187 IATLTHLAPLSIFADLVDLGAMGVVIVEDILIMMKNRPQVNAFGGLSVFFYGMGVAVYAF 246

Query: 240 EGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAG 299
           EGIGMVLPLE+EM+ K+KFGGILGLS+  I+L+Y  FGVLGYFAFG+ETKDIITANLGAG
Sbjct: 247 EGIGMVLPLESEMKDKDKFGGILGLSMALISLLYGAFGVLGYFAFGNETKDIITANLGAG 306

Query: 300 FVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSLVAMSVPNF 359
            +S LVQLGLCINLFFTFPLMMHPVYEIVERRF GG YCLWLRW+LV  VSLVA+ VPNF
Sbjct: 307 LISSLVQLGLCINLFFTFPLMMHPVYEIVERRFWGGRYCLWLRWVLVLAVSLVALLVPNF 366

Query: 360 ADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDVGIVVVGVVFGVSGTWYALM 419
           ADF+SLVGSS+CCGLGFVLPALFHLLVFKEEM WKGW +D+ IV +GVV  VSGTWYALM
Sbjct: 367 ADFMSLVGSSICCGLGFVLPALFHLLVFKEEMDWKGWSVDIAIVTIGVVLAVSGTWYALM 426

Query: 420 EILSVK 425
           EI SVK
Sbjct: 427 EIFSVK 432

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224102785|ref|XP_002312799.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222849207|gb|EEE86754.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224132448|ref|XP_002328275.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222837790|gb|EEE76155.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225438450|ref|XP_002277064.1| PREDICTED: proton-coupled amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|449444417|ref|XP_004139971.1| PREDICTED: proton-coupled amino acid transporter 3-like [Cucumis sativus] gi|449475703|ref|XP_004154528.1| PREDICTED: proton-coupled amino acid transporter 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|21593378|gb|AAM65327.1| putative amino acid transport protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297827867|ref|XP_002881816.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297327655|gb|EFH58075.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15233742|ref|NP_195538.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] gi|4539333|emb|CAB37481.1| putative amino acid transport protein [Arabidopsis thaliana] gi|7270809|emb|CAB80490.1| putative amino acid transport protein [Arabidopsis thaliana] gi|15215843|gb|AAK91466.1| AT4g38250/F22I13_20 [Arabidopsis thaliana] gi|22137052|gb|AAM91371.1| At4g38250/F22I13_20 [Arabidopsis thaliana] gi|332661505|gb|AEE86905.1| Transmembrane amino acid transporter family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30688867|ref|NP_850361.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|330254968|gb|AEC10062.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224084123|ref|XP_002307218.1| aromatic and neutral amino acid transporter [Populus trichocarpa] gi|222856667|gb|EEE94214.1| aromatic and neutral amino acid transporter [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query426
TAIR|locus:2121733436 AT4G38250 [Arabidopsis thalian 0.981 0.958 0.638 4.8e-142
TAIR|locus:504955913413 AT2G42005 "AT2G42005" [Arabido 0.931 0.961 0.649 2.5e-136
TAIR|locus:2156862427 AT5G65990 [Arabidopsis thalian 0.976 0.974 0.600 6.8e-127
TAIR|locus:2081471432 ANT1 "AT3G11900" [Arabidopsis 0.676 0.666 0.409 2e-61
MGI|MGI:2665001477 Slc36a3 "solute carrier family 0.626 0.559 0.302 2.4e-41
RGD|1309092477 Slc36a3 "solute carrier family 0.619 0.553 0.306 1e-40
UNIPROTKB|Q7Z2H8476 SLC36A1 "Proton-coupled amino 0.699 0.626 0.294 2.5e-39
UNIPROTKB|E1B9A0476 SLC36A1 "Uncharacterized prote 0.624 0.558 0.300 8.2e-39
UNIPROTKB|E2RHF1476 SLC36A1 "Uncharacterized prote 0.624 0.558 0.303 6.7e-36
UNIPROTKB|F1P8V1485 SLC36A3 "Uncharacterized prote 0.624 0.548 0.300 8.3e-35
TAIR|locus:2121733 AT4G38250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1389 (494.0 bits), Expect = 4.8e-142, P = 4.8e-142
 Identities = 277/434 (63%), Positives = 321/434 (73%)

Query:     6 KHEAGSSTKDLKKPQQPLPREDTPLIGKPAPLSSQTKTFANVFIAIVGAGVLGLPYAFKR 65
             ++EA SS+  LK P  P  RED+PL+GK  PLSSQ KTFANVFIA+VGAGVLGLPYAFKR
Sbjct:     4 QNEASSSSYTLKIP--PPAREDSPLLGKGPPLSSQFKTFANVFIAVVGAGVLGLPYAFKR 61

Query:    66 TGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLGFVVCGSIGRGIV 125
             TGWLMG L+++SVS LT HCMMLLV+TRRKL+S   G +KI SFGDLGF VCGS+GR +V
Sbjct:    62 TGWLMGVLLLVSVSVLTHHCMMLLVYTRRKLDSFNAGISKIGSFGDLGFAVCGSLGRIVV 121

Query:   126 DVLIILSQAGFCISYLMFIANTLV-------------YFFRT-STILGMSAKGFYIWSCL 171
             D+ IILSQAGFC+ YL+FI  TL               F R  S  LG+S+K  YIW C 
Sbjct:   122 DLFIILSQAGFCVGYLIFIGTTLANLSDPESPTSLRHQFTRLGSEFLGVSSKSLYIWGCF 181

Query:   172 PFQLGLNSIATLTHLAPLSIFXXXXXXXXXXXXXXXEVVISLKQMPEVAAFGNLSVFFYG 231
             PFQLGLNSI TLTHLAPLSIF               + +I LKQ P+V AFG +S+F YG
Sbjct:   182 PFQLGLNSIKTLTHLAPLSIFADIVDLGAMAVVIVEDSMIILKQRPDVVAFGGMSLFLYG 241

Query:   232 IGVAVYAFEGIGMVLPLEAEMEKKEKFGGILGLSVTFIALMYVGFGVLGYFAFGSETKDI 291
             +GVAVY+FEG+GMVLPLE+EM+ K+KFG +L L + FI+L+Y+ FG+LGY AFG +T DI
Sbjct:   242 MGVAVYSFEGVGMVLPLESEMKDKDKFGKVLALGMGFISLIYIAFGILGYLAFGEDTMDI 301

Query:   292 ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGEYCLWLRWLLVFLVSL 351
             ITANLGAG VS +VQLGLCINLFFTFPLMM+PV+EIVERRF  G Y  WLRW+LV  V+L
Sbjct:   302 ITANLGAGLVSTVVQLGLCINLFFTFPLMMNPVFEIVERRFSRGMYSAWLRWVLVLAVTL 361

Query:   352 VAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEEMGWKGWFLDXXXXXXXXXXXX 411
             VA+ VPNFADFLSLVGSS CC LGFVLPALFHLLVFKEEMGW  W  D            
Sbjct:   362 VALFVPNFADFLSLVGSSTCCVLGFVLPALFHLLVFKEEMGWLQWSSDTAIVVLGVVLAV 421

Query:   412 XXTWYALMEILSVK 425
               TW +L EI SVK
Sbjct:   422 SGTWSSLSEIFSVK 435
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0006007 "glucose catabolic process" evidence=RCA
GO:0010193 "response to ozone" evidence=RCA
GO:0030244 "cellulose biosynthetic process" evidence=RCA
TAIR|locus:504955913 AT2G42005 "AT2G42005" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2156862 AT5G65990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2081471 ANT1 "AT3G11900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2665001 Slc36a3 "solute carrier family 36 (proton/amino acid symporter), member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1309092 Slc36a3 "solute carrier family 36 (proton/amino acid symporter), member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z2H8 SLC36A1 "Proton-coupled amino acid transporter 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1B9A0 SLC36A1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RHF1 SLC36A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1P8V1 SLC36A3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query426
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 1e-68
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 2e-17
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 3e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  222 bits (568), Expect = 1e-68
 Identities = 116/402 (28%), Positives = 196/402 (48%), Gaps = 26/402 (6%)

Query: 38  SSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLE 97
            S  +   N+  AI+GAGVL LPYAFK+ GW+ G ++++ V  ++ + + LLV   + ++
Sbjct: 3   ISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVD 62

Query: 98  SSEHGFTKINSFGDLGFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTI 157
             +    +  S+GDLG+ + G  G+ ++   I+++  G CISYL+F  + L   F +   
Sbjct: 63  KVKG--KRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 158 LGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFADVVDLAATAVVMVDEVVISLKQMP 217
               +  ++I       + L+ I  L+ L+ LS+ A V  L    +V+    +  L    
Sbjct: 121 TCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQG 180

Query: 218 ----EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFG---GILGLSVTFIA 270
                      L+  F  IG+ V+AFEG  ++LP++  M+   KF     +L  ++  + 
Sbjct: 181 VGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVT 240

Query: 271 LMYVGFGVLGYFAFGSETKDIITANLGAGFVS-VLVQLGLCINLFFTFPLMMHPVYEIVE 329
           ++Y+  G++GY AFG+  K  I  NL        +  L L ++L  ++PL   P+ +IVE
Sbjct: 241 VLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVE 300

Query: 330 RRFKGGEYC-----------LWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVL 378
                               + +R  LV +  L+A+SVP   DFLSLVG++    L F+L
Sbjct: 301 NLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFIL 360

Query: 379 PALFHLLVFKEEMGWKGW-----FLDVGIVVVGVVFGVSGTW 415
           P LFHL + K +            LDV  +V+G++    G  
Sbjct: 361 PPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 426
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PLN03074473 auxin influx permease; Provisional 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 100.0
PRK10483414 tryptophan permease; Provisional 99.97
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.96
PRK09664415 tryptophan permease TnaB; Provisional 99.96
PRK15132403 tyrosine transporter TyrP; Provisional 99.96
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.96
PRK13629443 threonine/serine transporter TdcC; Provisional 99.93
TIGR00814397 stp serine transporter. The HAAAP family includes 99.92
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.85
PRK10655438 potE putrescine transporter; Provisional 99.82
PRK10435435 cadB lysine/cadaverine antiporter; Provisional 99.81
KOG1287479 consensus Amino acid transporters [Amino acid tran 99.81
PRK11021410 putative transporter; Provisional 99.8
TIGR00909429 2A0306 amino acid transporter. 99.8
TIGR03810468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.8
PRK10249458 phenylalanine transporter; Provisional 99.79
PRK15049499 L-asparagine permease; Provisional 99.79
TIGR00905473 2A0302 transporter, basic amino acid/polyamine ant 99.79
PRK10644445 arginine:agmatin antiporter; Provisional 99.78
PRK11387471 S-methylmethionine transporter; Provisional 99.78
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.77
TIGR01773452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.76
PRK10238456 aromatic amino acid transporter; Provisional 99.76
PRK10746461 putative transport protein YifK; Provisional 99.75
PRK11049469 D-alanine/D-serine/glycine permease; Provisional 99.74
PF03845320 Spore_permease: Spore germination protein; InterPr 99.73
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.73
TIGR00911501 2A0308 L-type amino acid transporter. 99.73
TIGR00908442 2A0305 ethanolamine permease. The three genes used 99.72
TIGR00913478 2A0310 amino acid permease (yeast). 99.72
PRK10580457 proY putative proline-specific permease; Provision 99.72
PRK10836489 lysine transporter; Provisional 99.71
PRK11357445 frlA putative fructoselysine transporter; Provisio 99.71
TIGR00930 953 2a30 K-Cl cotransporter. 99.7
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.7
PRK10197446 gamma-aminobutyrate transporter; Provisional 99.66
COG0531466 PotE Amino acid transporters [Amino acid transport 99.58
TIGR03428475 ureacarb_perm permease, urea carboxylase system. A 99.52
KOG1286554 consensus Amino acid transporters [Amino acid tran 99.51
TIGR00907482 2A0304 amino acid permease (GABA permease). 99.47
COG0833541 LysP Amino acid transporters [Amino acid transport 99.47
TIGR03813474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.38
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.38
PRK15238496 inner membrane transporter YjeM; Provisional 99.37
PF00324478 AA_permease: Amino acid permease; InterPro: IPR004 99.25
COG3949349 Uncharacterized membrane protein [Function unknown 98.99
KOG1289550 consensus Amino acid transporters [Amino acid tran 98.97
PRK11375484 allantoin permease; Provisional 98.9
KOG3832319 consensus Predicted amino acid transporter [Genera 98.85
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.81
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.76
TIGR00813407 sss transporter, SSS family. have different number 98.54
COG1457442 CodB Purine-cytosine permease and related proteins 98.52
PRK12488 549 acetate permease; Provisional 98.51
PRK11017404 codB cytosine permease; Provisional 98.5
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.5
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.47
PRK09442483 panF sodium/panthothenate symporter; Provisional 98.41
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 98.41
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 98.32
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 98.31
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.23
PRK09395 551 actP acetate permease; Provisional 98.18
TIGR02121487 Na_Pro_sym sodium/proline symporter. This family c 98.13
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 98.09
COG0591493 PutP Na+/proline symporter [Amino acid transport a 98.04
COG1953497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.99
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.99
PRK15419502 proline:sodium symporter PutP; Provisional 97.97
PRK00701439 manganese transport protein MntH; Reviewed 97.95
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 97.94
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.86
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.82
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.45
PF01566358 Nramp: Natural resistance-associated macrophage pr 97.37
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 97.35
PRK10484523 putative transporter; Provisional 97.33
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 97.32
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 96.99
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 96.26
PHA02764399 hypothetical protein; Provisional 96.18
COG4147529 DhlC Predicted symporter [General function predict 96.18
PRK15433439 branched-chain amino acid transport system 2 carri 96.1
PF00209523 SNF: Sodium:neurotransmitter symporter family; Int 95.98
COG1966 575 CstA Carbon starvation protein, predicted membrane 95.47
PRK15015 701 carbon starvation protein A; Provisional 95.09
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 92.38
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 90.69
TIGR01197390 nramp NRAMP (natural resistance-associated macroph 85.81
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 84.66
COG4145473 PanF Na+/panthothenate symporter [Coenzyme metabol 83.94
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 83.83
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 82.74
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.1e-56  Score=416.19  Aligned_cols=384  Identities=35%  Similarity=0.524  Sum_probs=346.4

Q ss_pred             CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105           34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG  113 (426)
Q Consensus        34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~  113 (426)
                      .++..|..++..|+.+.++|+|+|++|++|+++|++.|.+..++.+.++.|+++.+++|.++..++  +.....+|.+.+
T Consensus        43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~--~~~~~~~y~~~~  120 (449)
T KOG1304|consen   43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKR--FRGPSLDYAETA  120 (449)
T ss_pred             CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCccccHHHHH
Confidence            456799999999999999999999999999999999999999999999999999999999998765  222336777766


Q ss_pred             H----------HHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhh
Q 043105          114 F----------VVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATL  183 (426)
Q Consensus       114 ~----------~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l  183 (426)
                      +          +.+|++++.+++.++.+.++|.|..|+++.+++++++.+...+...+ .+.++++.++.++++++.|++
T Consensus       121 ~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s-~~~~i~~~~~~~lll~~Ir~L  199 (449)
T KOG1304|consen  121 ESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLS-VRLYILIQLPPLLLLNLIRNL  199 (449)
T ss_pred             HHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCcc-HHHHHHHHHHHHHHHHHHHhh
Confidence            5          56789999999999999999999999999999999999954333333 455566888888999999999


Q ss_pred             hhhhHHHHHHHHHHHHHhhhhhhhhhhhhccCCccccccCChhhHHHHHHHHHhhhccceeeccchhhccccccch---h
Q 043105          184 THLAPLSIFADVVDLAATAVVMVDEVVISLKQMPEVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKKEKFG---G  260 (426)
Q Consensus       184 ~~l~~~s~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p~~~~---~  260 (426)
                      |.++.+|.++.++++..+++++++...... +..+.+.+.++.+++..+|+.+|||.|+.++.|++++||+|++++   +
T Consensus       200 k~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~-~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g  278 (449)
T KOG1304|consen  200 KILSPFSLFANVFILVGLAIIMYYLVQDLP-PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG  278 (449)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhccC-CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence            999999999999999999999988877654 566777777899999999999999999999999999999999999   9


Q ss_pred             hHHHHHHHHHHHHHHHHhHhhhhcCCccccchhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCC----c
Q 043105          261 ILGLSVTFIALMYVGFGVLGYFAFGSETKDIITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGG----E  336 (426)
Q Consensus       261 ~~~~~~~~~~~~Y~~~g~~gy~~fg~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~----~  336 (426)
                      ++..++.+++++|..+|++||++||+++++.++.|+|++++...+++++.+.++.+||++++|+.+.+++.+++|    +
T Consensus       279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~  358 (449)
T KOG1304|consen  279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENR  358 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcch
Confidence            999999999999999999999999999999999999999999999999999999999999999999999976432    2


Q ss_pred             ---chhHHHHHHHHHHHHHHhhcCCccchhhhhchhhhhhhHhHHHHHHHHHHhccc---cchHHHHHHHHHHHHHHHHH
Q 043105          337 ---YCLWLRWLLVFLVSLVAMSVPNFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE---MGWKGWFLDVGIVVVGVVFG  410 (426)
Q Consensus       337 ---~~~~~~~~~~~~~~~~a~~~~~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~---~~~~~~~~~~~~~~~g~~~~  410 (426)
                         ..++.|..+++++..+|..+|+++.+++++|+++++.+.+++|++++++..+++   ..+|+.+.+.+++++|++.+
T Consensus       359 ~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~  438 (449)
T KOG1304|consen  359 KKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGF  438 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHH
Confidence               123499999999999999999999999999999999999999999999998743   34688999999999999999


Q ss_pred             HHhHHHHHHHH
Q 043105          411 VSGTWYALMEI  421 (426)
Q Consensus       411 v~~~~~~i~~i  421 (426)
                      +.|||+++.++
T Consensus       439 v~Gty~si~~i  449 (449)
T KOG1304|consen  439 VYGTYTSIKEI  449 (449)
T ss_pred             HHHHhhhhhcC
Confidence            99999999874

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
3l1l_A445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.86
3gia_A444 Uncharacterized protein MJ0609; membrane protein, 99.8
4djk_A511 Probable glutamate/gamma-aminobutyrate antiporter; 99.66
2jln_A501 MHP1; hydantoin, transporter, membrane protein, nu 99.16
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.41
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 98.08
2a65_A519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 96.93
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.86  E-value=3.1e-19  Score=175.42  Aligned_cols=344  Identities=13%  Similarity=0.013  Sum_probs=228.3

Q ss_pred             CCCCCChHHHHHHHHHHhhhhhhchhhHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhhH
Q 043105           34 PAPLSSQTKTFANVFIAIVGAGVLGLPYAFKRTGWLMGSLMIISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDLG  113 (426)
Q Consensus        34 ~~~~~s~~~~~~~l~~s~iG~Gil~lP~~~~~~G~~~g~i~l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l~  113 (426)
                      ++|+.+.++.+...+++++|+|++.+|....+.|. .+++..++.++........+.|...+.       |+..+..+..
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~-~~~~~~li~~~~~~~~a~~~~el~~~~-------p~~Gg~y~~~   77 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGG-IAIYGWLVTIIGALGLSMVYAKMSFLD-------PSPGGSYAYA   77 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCTTTHHHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHccC-------CCCCCchhhH
Confidence            46889999999999999999999999998888886 478888888999988888888888876       4455677779


Q ss_pred             HHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHHHHhhccccCCCchhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 043105          114 FVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLVYFFRTSTILGMSAKGFYIWSCLPFQLGLNSIATLTHLAPLSIFA  193 (426)
Q Consensus       114 ~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~  193 (426)
                      ++.+||+.+++..+.+++........+....++++..+++....   ....+...+...++......++.|...+++.+.
T Consensus        78 ~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~  154 (445)
T 3l1l_A           78 RRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD---PWVLTITCVVVLWIFVLLNIVGPKMITRVQAVA  154 (445)
T ss_dssp             HHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGS---HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccc---cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHH
Confidence            99999999999999999988888888888888888776664321   112233333344444455667888888888777


Q ss_pred             HHHHHHHhhhhhhhhhhhhccC-Cc---cccccCChhhHHHHHHHHHhhhccceeeccchhhcccc-ccchhhHHHHHHH
Q 043105          194 DVVDLAATAVVMVDEVVISLKQ-MP---EVAAFGNLSVFFYGIGVAVYAFEGIGMVLPLEAEMEKK-EKFGGILGLSVTF  268 (426)
Q Consensus       194 ~~~~~~~~~~~i~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~~m~~p-~~~~~~~~~~~~~  268 (426)
                      ....+..++.++.......+.. ..   +.....++.++..++....|+|.|.+......+|+||| |+.+|++..+..+
T Consensus       155 ~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~  234 (445)
T 3l1l_A          155 TVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLI  234 (445)
T ss_dssp             HHHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHH
Confidence            6665555444433332221111 10   11111235678889999999999999999999999998 6699999999999


Q ss_pred             HHHHHHHHHhHhhhhcCCccccc-------hhcccCCchHHHHHHHHHHHHHHhhhccchhhHHHHHHHhhcCCc-----
Q 043105          269 IALMYVGFGVLGYFAFGSETKDI-------ITANLGAGFVSVLVQLGLCINLFFTFPLMMHPVYEIVERRFKGGE-----  336 (426)
Q Consensus       269 ~~~~Y~~~g~~gy~~fg~~~~~~-------i~~~~~~~~~~~~~~~~~~~~~~~s~pl~~~~~~~~~~~~~~~~~-----  336 (426)
                      +.++|....+......+.+...+       +.++...++...+..+...+..+.+....++...+.+...-+++.     
T Consensus       235 ~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a~dg~lP~~~  314 (445)
T 3l1l_A          235 AAVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIF  314 (445)
T ss_dssp             HHHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTSSCGGG
T ss_pred             HHHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            99999999988887776543211       111111234445555666666666655555554454444322211     


Q ss_pred             -------chhHHHHHHHHHHHHHHhh--cC----CccchhhhhchhhhhhhHhHHHHHHHHHHhccc
Q 043105          337 -------YCLWLRWLLVFLVSLVAMS--VP----NFADFLSLVGSSVCCGLGFVLPALFHLLVFKEE  390 (426)
Q Consensus       337 -------~~~~~~~~~~~~~~~~a~~--~~----~~~~i~~~~G~~~~~~~~~ilP~l~~l~~~~~~  390 (426)
                             .+.+.......+..++...  .|    .++.+.++.+  ....+.|.++.+.+++.++++
T Consensus       315 ~~~~~~~~P~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~  379 (445)
T 3l1l_A          315 ARVNKAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGH  379 (445)
T ss_dssp             GCCCTTCCCHHHHHHHHHHHHHHHHSTTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSS
T ss_pred             HhcCCCCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence                   1111111112222233322  12    3555666643  456788999999999988754
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query426
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 96.7
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.70  E-value=0.25  Score=46.14  Aligned_cols=104  Identities=13%  Similarity=0.022  Sum_probs=62.0

Q ss_pred             CChHHHHHHHHHHhhhhh-hchhhHHHhccchhHHHHH----HHHHHHHHHHHHHHHHHHHHHhhccccCCccccchhhh
Q 043105           38 SSQTKTFANVFIAIVGAG-VLGLPYAFKRTGWLMGSLM----IISVSALTFHCMMLLVHTRRKLESSEHGFTKINSFGDL  112 (426)
Q Consensus        38 ~s~~~~~~~l~~s~iG~G-il~lP~~~~~~G~~~g~i~----l~~~~~~~~~t~~~l~~~~~~~~~~~~~~~~~~~y~~l  112 (426)
                      .|..+.+...++..+|-| +--.|+-..+.|...-++.    +++.+.-..+--..+.|..++        .+...+..+
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~~~--------g~i~~~~~i   76 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGA--------QGHGTTPAI   76 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT--------TTCCSHHHH
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCCCC--------CcccHHHHH
Confidence            567888999999999999 4468998877664433333    333333333333344443222        344566666


Q ss_pred             HHHHhcccchhHHHHHHHHHhhhhHHHHHHHHHHhHH
Q 043105          113 GFVVCGSIGRGIVDVLIILSQAGFCISYLMFIANTLV  149 (426)
Q Consensus       113 ~~~~~G~~~~~i~~~~~~~~~~g~~~~y~i~~~~~l~  149 (426)
                      .....+++....+.+...+..+..++-|....+-.+.
T Consensus        77 ~~~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~  113 (509)
T d2a65a1          77 FYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLG  113 (509)
T ss_dssp             HHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666555444455555556666666666666665443