Citrus Sinensis ID: 043107

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240
MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
cEEEEEEEEcccHHHHHHHHHHHccccccccccccEEccccEEEEEccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
cEEEEEEEEcccHHHHHHHHHHHccHccccccccHEHcHHHHEHEHccccccccccHHHHHccccccHHHccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccccccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccccccccHHHHHHHHHHHHHccHHHHEEEEEccccHccccccccccccHHHHHHc
MVSVFTALFLggvdrllplmqdsfpelgltrkdcremTFVESIVYldgyeveepinvdvllgrDFHVRFFrgkvdyltepipeeaFQGIYDIFLEqdqetngvlmffpyggkiseiseseipyphragnIYTLLYYAgwdlestddtYQRHDNMLKKLFNymtpyvaknprtayinyrdldvgtnnklghtsVQEASVWgkkyfknnfYRLVHVKTmvdpenffrneqsippfnlvkdel
MVSVFTALFLGGVDRLLPLMQDSFPELgltrkdcreMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVdpenffrneqsippfnlvkdel
MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
***VFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFR***************
MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF*******
MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVK*EL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLGRDFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNLVKDEL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query240 2.2.26 [Sep-21-2011]
A6P6V9544 Cannabidiolic acid syntha N/A no 0.933 0.411 0.467 3e-58
A6P6W1545 Cannabidiolic acid syntha N/A no 0.954 0.420 0.453 1e-55
A6P6W0545 Cannabidiolic acid syntha N/A no 0.941 0.414 0.447 4e-55
Q8GTB6545 Tetrahydrocannabinolic ac N/A no 0.937 0.412 0.452 1e-54
Q33DQ2545 Inactive tetrahydrocannab N/A no 0.937 0.412 0.443 4e-53
Q9SVG4570 Reticuline oxidase-like p no no 0.912 0.384 0.398 2e-43
P30986538 Reticuline oxidase OS=Esc N/A no 0.841 0.375 0.370 9e-36
P93479535 Reticuline oxidase OS=Pap N/A no 0.925 0.414 0.356 2e-34
O06997447 Uncharacterized FAD-linke yes no 0.791 0.425 0.301 7e-11
Q796Y5451 Uncharacterized FAD-linke no no 0.566 0.301 0.251 2e-05
>sp|A6P6V9|CBDAS_CANSA Cannabidiolic acid synthase OS=Cannabis sativa GN=CBDAS PE=1 SV=1 Back     alignment and function desciption
 Score =  224 bits (572), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 109/233 (46%), Positives = 158/233 (67%), Gaps = 9/233 (3%)

Query: 5   FTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDG---YEVEEPINVDVLL 61
           F+++FLGGVD L+ LM  SFPELG+ + DCR+++++++I++  G   Y+ +   N ++LL
Sbjct: 312 FSSVFLGGVDSLVDLMNKSFPELGIKKTDCRQLSWIDTIIFYSGVVNYDTDN-FNKEILL 370

Query: 62  GRDFHVR-FFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESE 120
            R       F+ K+DY+ +PIPE  F  I +   E+D    G+   +PYGG + EISES 
Sbjct: 371 DRSAGQNGAFKIKLDYVKKPIPESVFVQILEKLYEEDIGA-GMYALYPYGGIMDEISESA 429

Query: 121 IPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDL 180
           IP+PHRAG +Y L Y   W+ +  +   ++H N ++ ++N+MTPYV+KNPR AY+NYRDL
Sbjct: 430 IPFPHRAGILYELWYICSWEKQEDN---EKHLNWIRNIYNFMTPYVSKNPRLAYLNYRDL 486

Query: 181 DVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 233
           D+G N+     +  +A +WG+KYF  NF RLV VKT+VDP NFFRNEQSIPP 
Sbjct: 487 DIGINDPKNPNNYTQARIWGEKYFGKNFDRLVKVKTLVDPNNFFRNEQSIPPL 539
Catalyzes the stereoselective oxidative cyclization of the monoterpene moiety in cannabigerolic acid (CBGA), producing cannabidiolate (CBDA), the major cannabioid in fiber-type Cannabis plants. Can also use cannabinerolic acid as substrate, but not cannabigerol or cannabinerol.
Cannabis sativa (taxid: 3483)
EC: 1EC: .EC: 2EC: 1EC: .EC: 3EC: .EC: 8
>sp|A6P6W1|CASL2_CANSA Cannabidiolic acid synthase-like 2 OS=Cannabis sativa GN=CBDAS3 PE=2 SV=1 Back     alignment and function description
>sp|A6P6W0|CASL1_CANSA Cannabidiolic acid synthase-like 1 OS=Cannabis sativa GN=CBDAS2 PE=2 SV=1 Back     alignment and function description
>sp|Q8GTB6|THCAS_CANSA Tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=1 SV=1 Back     alignment and function description
>sp|Q33DQ2|THCAI_CANSA Inactive tetrahydrocannabinolic acid synthase OS=Cannabis sativa PE=3 SV=1 Back     alignment and function description
>sp|Q9SVG4|RETOL_ARATH Reticuline oxidase-like protein OS=Arabidopsis thaliana GN=At4g20830 PE=1 SV=2 Back     alignment and function description
>sp|P30986|RETO_ESCCA Reticuline oxidase OS=Eschscholzia californica GN=BBE1 PE=1 SV=1 Back     alignment and function description
>sp|P93479|RETO_PAPSO Reticuline oxidase OS=Papaver somniferum GN=BBE1 PE=3 SV=1 Back     alignment and function description
>sp|O06997|YVDP_BACSU Uncharacterized FAD-linked oxidoreductase YvdP OS=Bacillus subtilis (strain 168) GN=yvdP PE=1 SV=1 Back     alignment and function description
>sp|Q796Y5|YGAK_BACSU Uncharacterized FAD-linked oxidoreductase YgaK OS=Bacillus subtilis (strain 168) GN=ygaK PE=3 SV=4 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
224122382 534 predicted protein [Populus trichocarpa] 0.95 0.426 0.551 8e-73
224115242 527 predicted protein [Populus trichocarpa] 0.941 0.428 0.567 4e-72
255564305 469 Reticuline oxidase precursor, putative [ 0.941 0.481 0.570 6e-70
224103509 531 predicted protein [Populus trichocarpa] 0.954 0.431 0.544 1e-67
224117896 532 predicted protein [Populus trichocarpa] 0.941 0.424 0.554 3e-67
224122386 533 predicted protein [Populus trichocarpa] 0.945 0.425 0.555 3e-67
224056831 533 predicted protein [Populus trichocarpa] 0.95 0.427 0.540 4e-67
224110866 533 predicted protein [Populus trichocarpa] 0.945 0.425 0.555 4e-67
224108830 533 predicted protein [Populus trichocarpa] 0.945 0.425 0.555 6e-67
224056785 526 predicted protein [Populus trichocarpa] 0.945 0.431 0.540 1e-66
>gi|224122382|ref|XP_002330609.1| predicted protein [Populus trichocarpa] gi|222872167|gb|EEF09298.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  279 bits (713), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 129/234 (55%), Positives = 178/234 (76%), Gaps = 6/234 (2%)

Query: 3   SVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLG 62
           + FT+LFLGGVDRLLPLMQ+SFPELGL + DC E++++E  ++L G+      ++DVLL 
Sbjct: 303 ATFTSLFLGGVDRLLPLMQESFPELGLVKDDCIELSWIEFALFLAGFPSNA--SLDVLLD 360

Query: 63  R--DFHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESE 120
           R  D  +  F+ K DY+ +P+PE A +G+++ F E+D E+  + M  PYGGK+ EISES 
Sbjct: 361 RTPDQSITSFKAKSDYVKQPLPETALEGMWETFFEKDIESPSLFMV-PYGGKMEEISESS 419

Query: 121 IPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDL 180
           IP+PHRAGN+Y + YY  W  E  + + +RH + +++L++YMTPYV+KNPR AY+NYRDL
Sbjct: 420 IPFPHRAGNLYKIHYYVAWTEEGKEAS-ERHISWIRRLYSYMTPYVSKNPREAYVNYRDL 478

Query: 181 DVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFN 234
           D+G NN  G+TS ++AS+WG+KYFKNNF +LV +KT VDP NFFRNEQSIPPF+
Sbjct: 479 DLGINNLAGNTSYKQASIWGRKYFKNNFDKLVRIKTEVDPANFFRNEQSIPPFS 532

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224115242|ref|XP_002332196.1| predicted protein [Populus trichocarpa] gi|222875303|gb|EEF12434.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255564305|ref|XP_002523149.1| Reticuline oxidase precursor, putative [Ricinus communis] gi|223537556|gb|EEF39180.1| Reticuline oxidase precursor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224103509|ref|XP_002334045.1| predicted protein [Populus trichocarpa] gi|222839749|gb|EEE78072.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224117896|ref|XP_002317695.1| predicted protein [Populus trichocarpa] gi|222860760|gb|EEE98307.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224122386|ref|XP_002330610.1| predicted protein [Populus trichocarpa] gi|222872168|gb|EEF09299.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056831|ref|XP_002299045.1| predicted protein [Populus trichocarpa] gi|222846303|gb|EEE83850.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224110866|ref|XP_002333020.1| predicted protein [Populus trichocarpa] gi|222834634|gb|EEE73097.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224108830|ref|XP_002333338.1| predicted protein [Populus trichocarpa] gi|222836258|gb|EEE74679.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224056785|ref|XP_002299022.1| predicted protein [Populus trichocarpa] gi|224056787|ref|XP_002299023.1| predicted protein [Populus trichocarpa] gi|222846280|gb|EEE83827.1| predicted protein [Populus trichocarpa] gi|222846281|gb|EEE83828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query240
TAIR|locus:2133044530 AT4G20860 [Arabidopsis thalian 0.925 0.418 0.487 8.4e-58
TAIR|locus:2158740537 AT5G44400 [Arabidopsis thalian 0.925 0.413 0.497 9.6e-57
TAIR|locus:2158720541 AT5G44380 [Arabidopsis thalian 0.912 0.404 0.477 2.4e-53
TAIR|locus:2044692532 MEE23 "MATERNAL EFFECT EMBRYO 0.9 0.406 0.449 1.2e-51
TAIR|locus:2158730542 AT5G44390 [Arabidopsis thalian 0.908 0.402 0.44 1.9e-51
TAIR|locus:2158700532 AT5G44360 [Arabidopsis thalian 0.933 0.421 0.430 6.5e-51
TAIR|locus:2163441533 AT5G44440 [Arabidopsis thalian 0.958 0.431 0.443 2.5e-49
TAIR|locus:2204579534 AT1G30760 [Arabidopsis thalian 0.883 0.397 0.430 3.2e-49
TAIR|locus:2163411535 AT5G44410 [Arabidopsis thalian 0.95 0.426 0.443 1.1e-48
TAIR|locus:2121534532 AT4G20820 [Arabidopsis thalian 0.937 0.422 0.433 1.8e-46
TAIR|locus:2133044 AT4G20860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 594 (214.2 bits), Expect = 8.4e-58, P = 8.4e-58
 Identities = 113/232 (48%), Positives = 160/232 (68%)

Query:     3 SVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINVDVLLG 62
             S F  LFLGG+DRL+PLM   FPELGL  +DC EM+++ESI++ + +   +P+  ++LL 
Sbjct:   305 STFQTLFLGGIDRLIPLMNQKFPELGLRSQDCSEMSWIESIMFFN-WRSGQPL--EILLN 361

Query:    63 RD--FHVRFFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESE 120
             RD  F  ++F+ K DY+ +P+PE  F+ +   FLEQD     +++F P GGKIS+ISE+E
Sbjct:   362 RDLRFEDQYFKAKSDYVQKPVPENVFEEVTKRFLEQDTP---LMIFEPLGGKISKISETE 418

Query:   121 IPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDL 180
              PYPHR GN+Y + Y   W +   ++   +H   ++ L +YMTPYV+K+PR AY+NYRDL
Sbjct:   419 SPYPHRRGNLYNIQYMVKWKVNEVEEM-NKHVRWMRSLHDYMTPYVSKSPRGAYLNYRDL 477

Query:   181 DVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
             D+G+   + +TS ++A  WG+ YFK NF RL  VK  +DP NFFRNEQSIPP
Sbjct:   478 DLGSTKGI-NTSFEDARKWGETYFKGNFKRLGLVKGKIDPTNFFRNEQSIPP 528
GO:0003824 "catalytic activity" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008762 "UDP-N-acetylmuramate dehydrogenase activity" evidence=IEA
GO:0009055 "electron carrier activity" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016614 "oxidoreductase activity, acting on CH-OH group of donors" evidence=IEA
GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0005829 "cytosol" evidence=IDA
GO:0002679 "respiratory burst involved in defense response" evidence=RCA
GO:0006865 "amino acid transport" evidence=RCA
GO:0009407 "toxin catabolic process" evidence=RCA
GO:0010167 "response to nitrate" evidence=RCA
GO:0010200 "response to chitin" evidence=RCA
GO:0010583 "response to cyclopentenone" evidence=RCA
GO:0015706 "nitrate transport" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2158740 AT5G44400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158720 AT5G44380 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044692 MEE23 "MATERNAL EFFECT EMBRYO ARREST 23" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158730 AT5G44390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158700 AT5G44360 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163441 AT5G44440 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2204579 AT1G30760 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2163411 AT5G44410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2121534 AT4G20820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
pfam0803145 pfam08031, BBE, Berberine and berberine like 2e-16
>gnl|CDD|219706 pfam08031, BBE, Berberine and berberine like Back     alignment and domain information 
 Score = 70.3 bits (173), Expect = 2e-16
 Identities = 28/59 (47%), Positives = 33/59 (55%), Gaps = 14/59 (23%)

Query: 173 AYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP 231
           AY+NY DLD+G               WG+ YF  N+ RL  VK   DP+N FRNEQSIP
Sbjct: 1   AYVNYPDLDLG--------------DWGEAYFGGNYERLRKVKAKYDPDNVFRNEQSIP 45

This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. Length = 45

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 240
PF0803147 BBE: Berberine and berberine like ; InterPro: IPR0 99.73
COG0277459 GlcD FAD/FMN-containing dehydrogenases [Energy pro 95.98
PLN02441525 cytokinin dehydrogenase 95.96
PF09265281 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and c 95.95
PLN00107257 FAD-dependent oxidoreductase; Provisional 95.39
PF04030259 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: I 94.51
TIGR01678438 FAD_lactone_ox sugar 1,4-lactone oxidases. This mo 92.77
PF02913248 FAD-oxidase_C: FAD linked oxidases, C-terminal dom 91.81
TIGR01677557 pln_FAD_oxido plant-specific FAD-dependent oxidore 91.59
KOG1231505 consensus Proteins containing the FAD binding doma 91.33
TIGR01679419 bact_FAD_ox FAD-linked oxidoreductase. This model 90.63
TIGR00387413 glcD glycolate oxidase, subunit GlcD. This protein 87.34
PLN02805555 D-lactate dehydrogenase [cytochrome] 83.43
>PF08031 BBE: Berberine and berberine like ; InterPro: IPR012951 This domain is found in the berberine bridge and berberine bridge-like enzymes, which are involved in the biosynthesis of numerous isoquinoline alkaloids Back     alignment and domain information 
Probab=99.73  E-value=2.2e-18  Score=107.64  Aligned_cols=47  Identities=45%  Similarity=0.805  Sum_probs=34.4

Q ss_pred             ccccccCCCCCCCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCCC
Q 043107          173 AYINYRDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIP  231 (240)
Q Consensus       173 ~Y~Ny~d~~~~~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I~  231 (240)
                      +|+||+|.+++.            ..|...|||+|++||++||++|||+|||+++|+||
T Consensus         1 aY~Ny~d~~~~~------------~~~~~~yyg~n~~rL~~iK~~yDP~n~F~~~q~I~   47 (47)
T PF08031_consen    1 AYVNYPDPDLPG------------DDWQEAYYGENYDRLRAIKRKYDPDNVFRFPQSIP   47 (47)
T ss_dssp             --TTS--GGGGS------------SHHHHHHHGGGHHHHHHHHHHH-TT-TS-STTS--
T ss_pred             CcccCCCCccch------------hHHHHHHhchhHHHHHHHHHHhCccceeCCCCCcC
Confidence            599999987752            24889999999999999999999999999999996

They catalyse the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine [].; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 2IPI_A 2Y3S_A 2Y3R_D 2Y08_B 2Y4G_A 3D2H_A 3FW9_A 3FW8_A 3FWA_A 3D2J_A ....
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion] Back     alignment and domain information
>PLN02441 cytokinin dehydrogenase Back     alignment and domain information
>PF09265 Cytokin-bind: Cytokinin dehydrogenase 1, FAD and cytokinin binding; InterPro: IPR015345 This domain adopts an alpha+beta sandwich structure with an antiparallel beta-sheet, in a ferredoxin-like fold Back     alignment and domain information
>PLN00107 FAD-dependent oxidoreductase; Provisional Back     alignment and domain information
>PF04030 ALO: D-arabinono-1,4-lactone oxidase ; InterPro: IPR007173 This domain is specific to D-arabinono-1,4-lactone oxidase 1 Back     alignment and domain information
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases Back     alignment and domain information
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage Back     alignment and domain information
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase Back     alignment and domain information
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion] Back     alignment and domain information
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase Back     alignment and domain information
>TIGR00387 glcD glycolate oxidase, subunit GlcD Back     alignment and domain information
>PLN02805 D-lactate dehydrogenase [cytochrome] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
3vte_A518 Crystal Structure Of Tetrahydrocannabinolic Acid Sy 8e-56
4dns_A497 Crystal Structure Of Bermuda Grass Isoallergen Bg60 4e-46
3tsh_A500 Crystal Structure Of Phl P 4, A Grass Pollen Allerg 3e-42
3d2d_A538 Structure Of Berberine Bridge Enzyme In Complex Wit 7e-37
3fw9_A495 Structure Of Berberine Bridge Enzyme In Complex Wit 8e-37
3fwa_A497 Structure Of Berberine Bridge Enzyme, C166a Variant 8e-37
3fw8_A495 Structure Of Berberine Bridge Enzyme, C166a Variant 8e-37
3fw7_A498 Structure Of Berberine Bridge Enzyme, H104a Variant 9e-37
4ec3_A519 Structure Of Berberine Bridge Enzyme, H174a Variant 9e-37
3gsy_A519 Structure Of Berberine Bridge Enzyme In Complex Wit 9e-37
2wdw_A523 The Native Crystal Structure Of The Primary Hexose 5e-11
2y08_A530 Structure Of The Substrate-Free Fad-Dependent Tiran 2e-06
2ipi_A521 Crystal Structure Of Aclacinomycin Oxidoreductase L 2e-06
3pop_A501 The Crystal Structure Of Gilr, An Oxidoreductase Th 8e-05
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa Length = 518 Back     alignment and structure 
Iteration: 1

 Score =  213 bits (542), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 105/232 (45%), Positives = 151/232 (65%), Gaps = 7/232 (3%)
Query: 5   FTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPINV--DVLLG 62
           F+++F GGVD L+ LM  SFPELG+ + DC+E +++++ ++  G       N   ++LL 
Sbjct: 286 FSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKEILLD 345
Query: 63  RDFHVR-FFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEI 121
           R    +  F  K+DY+ +PIPE A   I +   E+D    G+ + +PYGG + EISES I
Sbjct: 346 RSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEEDVGA-GMYVLYPYGGIMEEISESAI 404
Query: 122 PYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINYRDLD 181
           P+PHRAG +Y L Y A W+ +  +   ++H N ++ ++N+ TPYV++NPR AY+NYRDLD
Sbjct: 405 PFPHRAGIMYELWYTASWEKQEDN---EKHINWVRSVYNFTTPYVSQNPRLAYLNYRDLD 461
Query: 182 VGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPF 233
           +G  N     +  +A +WG+KYF  NF RLV VKT VDP NFFRNEQSIPP 
Sbjct: 462 LGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPL 513
>pdb|4DNS|A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens Length = 497 Back     alignment and structure
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity Length = 500 Back     alignment and structure
>pdb|3D2D|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Reticuline Length = 538 Back     alignment and structure
>pdb|3FW9|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With (S)-Scoulerine Length = 495 Back     alignment and structure
>pdb|3FWA|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant In Complex With (S)-Reticuline Length = 497 Back     alignment and structure
>pdb|3FW8|A Chain A, Structure Of Berberine Bridge Enzyme, C166a Variant Length = 495 Back     alignment and structure
>pdb|3FW7|A Chain A, Structure Of Berberine Bridge Enzyme, H104a Variant Length = 498 Back     alignment and structure
>pdb|4EC3|A Chain A, Structure Of Berberine Bridge Enzyme, H174a Variant In Complex With (S)-Reticuline Length = 519 Back     alignment and structure
>pdb|3GSY|A Chain A, Structure Of Berberine Bridge Enzyme In Complex With Dehydroscoulerine Length = 519 Back     alignment and structure
>pdb|2WDW|A Chain A, The Native Crystal Structure Of The Primary Hexose Oxidase ( Dbv29) In Antibiotic A40926 Biosynthesis Length = 523 Back     alignment and structure
>pdb|2Y08|A Chain A, Structure Of The Substrate-Free Fad-Dependent Tirandamycin Oxidase Taml Length = 530 Back     alignment and structure
>pdb|2IPI|A Chain A, Crystal Structure Of Aclacinomycin Oxidoreductase Length = 521 Back     alignment and structure
>pdb|3POP|A Chain A, The Crystal Structure Of Gilr, An Oxidoreductase That Catalyzes The Terminal Step Of Gilvocarcin Biosynthesis Length = 501 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query240
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 2e-73
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 1e-69
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 6e-62
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 2e-61
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 6e-60
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 1e-59
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 2e-59
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 3e-57
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 3e-33
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 6e-04
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Length = 518 Back     alignment and structure
 Score =  231 bits (589), Expect = 2e-73
 Identities = 105/235 (44%), Positives = 152/235 (64%), Gaps = 7/235 (2%)

Query: 1   MVSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVEEPIN--VD 58
           +   F+++F GGVD L+ LM  SFPELG+ + DC+E +++++ ++  G       N   +
Sbjct: 282 VHGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKKE 341

Query: 59  VLLGRDFHVR-FFRGKVDYLTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEIS 117
           +LL R    +  F  K+DY+ +PIPE A   I +   E+D    G+ + +PYGG + EIS
Sbjct: 342 ILLDRSAGKKTAFSIKLDYVKKPIPETAMVKILEKLYEED-VGAGMYVLYPYGGIMEEIS 400

Query: 118 ESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLKKLFNYMTPYVAKNPRTAYINY 177
           ES IP+PHRAG +Y L Y A W+ +  ++   +H N ++ ++N+ TPYV++NPR AY+NY
Sbjct: 401 ESAIPFPHRAGIMYELWYTASWEKQEDNE---KHINWVRSVYNFTTPYVSQNPRLAYLNY 457

Query: 178 RDLDVGTNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPP 232
           RDLD+G  N     +  +A +WG+KYF  NF RLV VKT VDP NFFRNEQSIPP
Sbjct: 458 RDLDLGKTNHASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPP 512
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 3fw8_A* 3fw7_A* 3fwa_A* Length = 495 Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Length = 530 Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Length = 521 Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Length = 503 Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Length = 523 Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Length = 473 Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Length = 501 Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Length = 459 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Length = 524 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
3vte_A518 Tetrahydrocannabinolic acid synthase; BI-covalent 100.0
3fw9_A495 Reticuline oxidase; BI-covalent flavinylation, N-g 100.0
3rja_A473 Carbohydrate oxidase; protein-substrate analogue c 100.0
3pop_A501 GILR oxidase; FAD binding protein, gilvocarcin, gi 100.0
3tsh_A500 Pollen allergen PHL P 4; flavoprotein, BI-covalent 99.98
2y3s_A530 TAML; oxidoreductase; HET: FAD TIR; 1.67A {Strepto 99.97
2wdx_A523 Putative hexose oxidase; oxidoreductase-antibiotic 99.96
2ipi_A521 Aclacinomycin oxidoreductase (aknox); anthracyclin 99.96
1zr6_A503 Glucooligosaccharide oxidase; alpha + beta, flavoe 99.95
2bvf_A459 6-hydroxy-D-nicotine oxidase; autoflavinylation, e 99.91
1w1o_A534 Cytokinin dehydrogenase 1; flavin, oxidoreductase, 98.28
2vfr_A422 Xylitol oxidase, alditol oxidase; FAD, sugar, poly 95.15
2exr_A524 Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin 95.02
1wvf_A520 4-cresol dehydrogenase [hydroxylating] flavoprote 93.85
4bby_A658 Alkyldihydroxyacetonephosphate synthase, peroxiso; 92.12
4feh_A481 Oxidoreductase DPRE1; alpha+beta, decaprenylphosph 89.9
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa} Back     alignment and structure
Probab=100.00  E-value=1.2e-42  Score=318.26  Aligned_cols=227  Identities=46%  Similarity=0.900  Sum_probs=190.8

Q ss_pred             EEEEEEEEecChhchHHhhhhhcCCCCCCCCCceEcCHHHHHHHHhCCCCC-CC---cccccccCCCcccc-cccccccC
Q 043107            2 VSVFTALFLGGVDRLLPLMQDSFPELGLTRKDCREMTFVESIVYLDGYEVE-EP---INVDVLLGRDFHVR-FFRGKVDY   76 (240)
Q Consensus         2 ~~~~~g~~~G~~~e~~~~l~pl~~~lg~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~-~~~~~s~~   76 (240)
                      .+.+.++|+|+++++.++|+++|+++|+....++++||++++.++++++.+ .+   +  +.+.++.+.+. +|+.||.+
T Consensus       283 ~~~~~~~~~G~~~~~~~~l~~~~~~lg~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~k~ks~~  360 (518)
T 3vte_A          283 HGYFSSIFHGGVDSLVDLMNKSFPELGIKKTDCKEFSWIDTTIFYSGVVNFNTANFKK--EILLDRSAGKKTAFSIKLDY  360 (518)
T ss_dssp             EEEEEEEEESCHHHHHHHHHHHCGGGCCCGGGEEEECHHHHHHHTSSSCCC-----CG--GGGGCTTCSCCBEEEEEEEE
T ss_pred             EEEEEEEEeCCHHHHhhhhhhhhhhcCCCccceeecchhhhhhhhhcCCccCCccchh--hhhccCCcCcccceeeechh
Confidence            467889999999999999999888888777788999999998888765433 33   3  45555544444 56889999


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCCceEEEEEecCccccccCCCCCCCcCCCCceEEEEEEeEeCCCCCchhHHHHHHHHH
Q 043107           77 LTEPIPEEAFQGIYDIFLEQDQETNGVLMFFPYGGKISEISESEIPYPHRAGNIYTLLYYAGWDLESTDDTYQRHDNMLK  156 (240)
Q Consensus        77 ~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~gGav~~v~~~~tAf~hR~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~  156 (240)
                      +.++|++++++.+++++.+.+. ..+.++|+++||+|++|++++|||+||+++.|.+++.+.|.+++   .+++.++|++
T Consensus       361 ~~~~l~~~~i~~l~~~~~~~~~-~~~~v~~~~~GGa~~~v~~~~TAf~hR~~~~~~~~~~~~w~~~~---~~~~~~~w~~  436 (518)
T 3vte_A          361 VKKPIPETAMVKILEKLYEEDV-GAGMYVLYPYGGIMEEISESAIPFPHRAGIMYELWYTASWEKQE---DNEKHINWVR  436 (518)
T ss_dssp             ESSCCCHHHHHHHHHGGGGSCT-TTEEEEEEECCGGGGTSCTTSSSCCCCTTCCEEEEEEEEECCTT---THHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhCCC-CCeEEEEeecCccccCCCCCCCcccccCcceEEEEEEEecCCcc---hhHHHHHHHH
Confidence            9888999999999998887542 25789999999999999999999999993499999999998765   5788999999


Q ss_pred             HHHHhhcccccCCCCcccccccCCCCC-CCCCCCCchhHHhhHHHHHhhhhhHHHHHHHHhhcCcCCCCCCCCCCCCCCC
Q 043107          157 KLFNYMTPYVAKNPRTAYINYRDLDVG-TNNKLGHTSVQEASVWGKKYFKNNFYRLVHVKTMVDPENFFRNEQSIPPFNL  235 (240)
Q Consensus       157 ~~~~~l~~~~~~~~~~~Y~Ny~d~~~~-~~~~~~~~~~~~~~~~~~~y~G~n~~RL~~iK~kyDP~nvF~~~~~I~~~~~  235 (240)
                      ++++.|.|+.+++++++|+||+|.+++ .+. .+||+++.+..|++.|||+||+||++||+||||+|||+++|+|+|...
T Consensus       437 ~~~~~~~p~~~~~~~g~YvNy~D~dl~~~~~-~~~~~~~~~~~w~~~Yyg~N~~RL~~vK~~yDP~n~F~~~QsI~p~~~  515 (518)
T 3vte_A          437 SVYNFTTPYVSQNPRLAYLNYRDLDLGKTNH-ASPNNYTQARIWGEKYFGKNFNRLVKVKTKVDPNNFFRNEQSIPPLPP  515 (518)
T ss_dssp             HHHHHTGGGSCCTTCCCCTTSCCGGGCCCCT-TSCCCHHHHHHHHHHHSSTHHHHHHHHHHHHCTTCCSCCTTCCCCCCT
T ss_pred             HHHHHhccccCCCCccccccCCCcccccccc-ccccchhhhhhHHHHHhHhHHHHHHHHHhhcCchhcccCCCCCCCCCC
Confidence            999999998765668999999998776 321 347888888899999999999999999999999999999999998754
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A* Back     alignment and structure
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A* Back     alignment and structure
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A* Back     alignment and structure
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A* Back     alignment and structure
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A* Back     alignment and structure
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A* Back     alignment and structure
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus} Back     alignment and structure
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A* Back     alignment and structure
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A* Back     alignment and structure
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A* Back     alignment and structure
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A* Back     alignment and structure
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A* Back     alignment and structure
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A* Back     alignment and structure
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A* Back     alignment and structure
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query240
d1w1oa1289 Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId 95.19
d1e8ga1287 Vanillyl-alcohol oxidase {Fungus (Penicillium simp 92.29
d1wvfa1279 Flavoprotein subunit of p-cresol methylhydroxylase 86.73
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: FAD-linked oxidases, C-terminal domain
family: Cytokinin dehydrogenase 1
domain: Cytokinin dehydrogenase 1
species: Maize (Zea mays) [TaxId: 4577]

Probab=95.19  E-value=0.069  Score=42.68  Aligned_cols=33  Identities=30%  Similarity=0.579  Sum_probs=28.5

Q ss_pred             hHHHHHhhhh-hHHHHHHHHhhcCcCCCCCCCCCC
Q 043107          197 SVWGKKYFKN-NFYRLVHVKTMVDPENFFRNEQSI  230 (240)
Q Consensus       197 ~~~~~~y~G~-n~~RL~~iK~kyDP~nvF~~~~~I  230 (240)
                      +.| ..=||. .++|.++.|++|||.++..-.|.|
T Consensus       254 ~dW-~~HFG~~kW~~F~~~K~~yDP~~ILsPGQ~I  287 (289)
T d1w1oa1         254 SDW-VRHFGAAKWNRFVEMKNKYDPKRLLSPGQDI  287 (289)
T ss_dssp             HHH-HHHHCHHHHHHHHHHHHHHCTTCCBCGGGCS
T ss_pred             HHH-HHHcCcchHHHHHHHHhhCCcccccCCCCcc
Confidence            348 457895 699999999999999999988887
>d1e8ga1 d.58.32.1 (A:274-560) Vanillyl-alcohol oxidase {Fungus (Penicillium simplicissimum) [TaxId: 69488]} Back     information, alignment and structure
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol methylhydroxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure