Citrus Sinensis ID: 043116

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480--
Protein Sequence
KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIANGKVY
Secondary Structure (PSIPRED)
cHHHHHcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHccHHHHHHccccccHHHHHHHHHHHHHHHHHcHHcccccccccHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccccHHcHHHHcHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccHHHHcHHHHcccHHcccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
KLGEFLQSqqfqisapalslnlqskfeiLPTMVagvwsddnkvQLEATTLFRKMlsfdrnspiekviqsgvvprFVEFLMREDYPQLQFEAARALTniasgtsentkvaidhgaVPIFVKLlaspsddvREQAVWALGnvagdssrcrdFVLSQGALIPLLAELNEHAKLSMLRTATWtlsnfcrgkpqppfnqiRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIgnivtgddfqtqciiNCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAgligpivnllqdaefgtKKEAAWVISnatsggthEQIKHLVRegcvkplcdllpcpdpqiVTVCLIGLENILkvgeaekntdnigdvNQYAQLVEEAEGLEKIEnlqshdnndiHEMSVKILETYWcgrvvgpqpgltyagnegedalgsnviangkvy
Flexible Loop (DISEMBL)
KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKmlsfdrnspiekviqsGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIgnivtgddfqtqCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGeaekntdnigDVNQYAQLVEEAEGLEKIENlqshdnndIHEMSVKILETYWCGRVVGPQPGLTYagnegedalgsnviangkvy
Low Complexity Region (SEG)
KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKplcdllpcpdpQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIANGKVY
Disordered region (IsUnstruct)
**************APALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGL**I********NDIHEMSVKILETYWCGRVVGPQPGLTYAG******************
Disordered Region (DISOPRED)
****************************LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQ*************************
Disordered Region (DISEMBL)
KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIANGKVY
Disordered Region (DISPRO)
********************NLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG*******************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIANGKVY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	482	2.2.26 [Sep-21-2011]
Q71VM4	526	Importin subunit alpha-1a	yes	no	0.939	0.861	0.714	0.0
Q96321	532	Importin subunit alpha-1	no	no	0.964	0.874	0.689	0.0
Q9SLX0	534	Importin subunit alpha-1b	no	no	0.896	0.808	0.739	0.0
O22478	527	Importin subunit alpha OS	N/A	no	0.919	0.840	0.723	0.0
O04294	531	Importin subunit alpha-2	no	no	0.873	0.792	0.703	1e-174
Q76P29	516	Importin subunit alpha-B	yes	no	0.877	0.819	0.575	1e-137
O35345	536	Importin subunit alpha-7	yes	no	0.863	0.776	0.580	1e-131
Q0V7M0	536	Importin subunit alpha-7	yes	no	0.863	0.776	0.580	1e-130
Q5RBV0	536	Importin subunit alpha-7	yes	no	0.863	0.776	0.578	1e-129
O60684	536	Importin subunit alpha-7	yes	no	0.863	0.776	0.578	1e-129

>sp|Q71VM4|IMA1A_ORYSJ Importin subunit alpha-1a OS=Oryza sativa subsp. japonica GN=Os01g0253300 PE=1 SV=2

 Score =  667 bits (1720), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/469 (71%), Positives = 381/469 (81%), Gaps = 16/469 (3%)

Query: 10  QFQISAPA-LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQ 68
           Q Q   PA  +  +  K E LP M+ GV+SDDN +QLEATT FRK+LS +R+ PIE+VIQ
Sbjct: 54  QAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ 113

Query: 69  SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
           SGVVPRFV+FL RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVKLL S SDD
Sbjct: 114 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDD 173

Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
           VREQAVWALGNVAGDS +CRD VL+ GAL+PLLA+LNEH KLSMLR ATWTLSNFCRGKP
Sbjct: 174 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 233

Query: 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL 248
           QP F Q RPAL  LA+LI SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGVCPRLV+LL
Sbjct: 234 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 293

Query: 249 GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308
            H S  VL  ALRT+GNIVTGDD QTQCII+  AL  LL LL  N  KSIKKE CW ISN
Sbjct: 294 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 353

Query: 309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC 368
           ITAGN++QIQAVI+AG+IGP+VNLLQ AEF  KKEAAW ISNATSGG+H+QIK+LV EGC
Sbjct: 354 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 413

Query: 369 VKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN 428
           +KPLCDLL CPD +IVTVCL GLENILKVGE +K T   GDVN ++Q+++EAEGLEKIEN
Sbjct: 414 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDK-TLAAGDVNVFSQMIDEAEGLEKIEN 472

Query: 429 LQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIA 477
           LQSHDNN+I+E +VKILE YW               +E +D +G+  +A
Sbjct: 473 LQSHDNNEIYEKAVKILEAYWM--------------DEEDDTMGATTVA 507

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q96321|IMA1_ARATH Importin subunit alpha-1 OS=Arabidopsis thaliana GN=KAP1 PE=1 SV=2

 Score =  662 bits (1709), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/477 (68%), Positives = 385/477 (80%), Gaps = 12/477 (2%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E +Q+ Q   SA A S++   K + L  MVAGVWSDD  +QLE+TT FRK+LS +R+
Sbjct: 48  KRREGMQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERS 105

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VI +GVVPRFVEFL +EDYP +QFEAA ALTNIASGTS++TKV IDH AVPIFV+
Sbjct: 106 PPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQ 165

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LLASPSDDVREQAVWALGNVAGDS RCRD VL  GAL+PLL +LNEHAKLSMLR ATWTL
Sbjct: 166 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTL 225

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQP F+Q++PAL  L +LI S+DE+VLTDAC AL+YL+DGTNDKIQ VI+AGV
Sbjct: 226 SNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGV 285

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
            P+LV+LL H S  VL  ALRT+GNIVTGDD QTQC+IN GAL  L  LL  NH KSIKK
Sbjct: 286 VPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKK 345

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN++QIQ V++A LI P+V+LLQ+AEF  KKEAAW ISNATSGG+H+QI
Sbjct: 346 EACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQI 405

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K+LV +GC+KPLCDLL CPDP+I+TVCL GLENILKVGEAEKN  + GD+N YAQL+++A
Sbjct: 406 KYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDA 465

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPGLTYAGNEG 467
           EGLEKIENLQSHDNN+I+E +VKILETYW             V G Q G  + GN+ 
Sbjct: 466 EGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQA 522

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs (By similarity). Cellular receptor for the nuclear import of the virD2 protein of Agrobacterium.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLX0|IMA1B_ORYSJ Importin subunit alpha-1b OS=Oryza sativa subsp. japonica GN=Os05g0155500 PE=1 SV=2

 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/433 (73%), Positives = 365/433 (84%), Gaps = 1/433 (0%)

Query: 17  ALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFV 76
           A S  LQ K E LP MV  V SDD+ VQLEATT FRK+LS +R+ PIE+VI +GVVPRF+
Sbjct: 68  AHSSALQQKLEGLPAMVQAVQSDDSAVQLEATTQFRKLLSIERSPPIEEVINTGVVPRFI 127

Query: 77  EFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWA 136
            FL REDYPQLQFEAA ALTNIASGTS+NTKV ++ GAVPIFVKLL+SPS+DVREQAVWA
Sbjct: 128 AFLQREDYPQLQFEAAWALTNIASGTSDNTKVVVESGAVPIFVKLLSSPSEDVREQAVWA 187

Query: 137 LGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIR 196
           LGNVAGDS +CRD VL+ G L PLL +LNEHAKLSMLR ATWTLSNFCRGKPQP F Q++
Sbjct: 188 LGNVAGDSPKCRDLVLASGGLYPLLQQLNEHAKLSMLRNATWTLSNFCRGKPQPNFEQVK 247

Query: 197 PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVL 256
           PAL  L +LI S DE+VLTDAC AL+YL+DGTNDKIQAVIE+GV PRLV+LL H S  VL
Sbjct: 248 PALSALQRLIHSQDEEVLTDACWALSYLSDGTNDKIQAVIESGVFPRLVELLMHPSASVL 307

Query: 257 TAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ 316
             ALRT+GNIVTGDD QTQC+I+  AL  LL LL +NH KSIKKE CW ISNITAGNREQ
Sbjct: 308 IPALRTVGNIVTGDDMQTQCVIDHQALPCLLNLLTNNHKKSIKKEACWTISNITAGNREQ 367

Query: 317 IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL 376
           IQAVI+A +I P+V+LLQ AEF  KKEAAW ISNATSGGTH+QIK+LV +GC+KPLCDLL
Sbjct: 368 IQAVINANIIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHDQIKYLVAQGCIKPLCDLL 427

Query: 377 PCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNND 436
            CPDP+IVTVCL GLENILKVGEAEKN    GDVN YAQ++++AEGLEKIENLQSHDN +
Sbjct: 428 VCPDPRIVTVCLEGLENILKVGEAEKNL-GAGDVNSYAQMIDDAEGLEKIENLQSHDNTE 486

Query: 437 IHEMSVKILETYW 449
           I+E +VK+LE+YW
Sbjct: 487 IYEKAVKMLESYW 499

Functions in nuclear protein import. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. In conjunction with importin beta-1, mediates the nuclear envelope docking, and the subsequent translocation into the nucleus of the constitutive morphogenetic 1 (COP1) protein containing bipartite NLS motif.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O22478|IMA_SOLLC Importin subunit alpha OS=Solanum lycopersicum PE=2 SV=2

 Score =  650 bits (1678), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/445 (72%), Positives = 370/445 (83%), Gaps = 2/445 (0%)

Query: 5   FLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIE 64
            LQ+QQF  +A A+S +L  K E LP ++AGVWSDD+ +QLE TT FRK+LS +RN PIE
Sbjct: 53  LLQAQQFPSTA-AVS-HLDKKLETLPELIAGVWSDDSSLQLECTTQFRKLLSIERNPPIE 110

Query: 65  KVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS 124
           +VIQSGVVPRFVEFL R+DYPQLQFEAA ALTNIASGTSENTKV ID+G+VPIF++LL+S
Sbjct: 111 EVIQSGVVPRFVEFLARDDYPQLQFEAAWALTNIASGTSENTKVVIDYGSVPIFIRLLSS 170

Query: 125 PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC 184
           PSDDVREQAVWALGN+AGDS + RD VL  GAL+ LLA+ NE AKLSMLR ATWTLSNFC
Sbjct: 171 PSDDVREQAVWALGNIAGDSPKYRDLVLGHGALVALLAQFNEQAKLSMLRNATWTLSNFC 230

Query: 185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRL 244
           RGKPQP F Q + AL  L +LI SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGVC RL
Sbjct: 231 RGKPQPLFEQTKAALPTLGRLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCSRL 290

Query: 245 VKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW 304
           V+LL H S  VL  ALRT+GNIVTGDD QTQ +I+  AL  L+ LL  N+ KSIKKE CW
Sbjct: 291 VELLLHSSPSVLIPALRTVGNIVTGDDIQTQVMIDHHALPCLVNLLTQNYKKSIKKEACW 350

Query: 305 IISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV 364
            ISNITAGNR QIQ VI+AG+I P+V LLQ+AEF  KKEAAW ISNATSGG H+QIK LV
Sbjct: 351 TISNITAGNRNQIQIVIEAGIIAPLVYLLQNAEFEIKKEAAWAISNATSGGNHDQIKFLV 410

Query: 365 REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE 424
            +GC+KPLCDLL CPDP+IVTVCL GLENILK+GEA+K+  N   VN YAQL++EAEGLE
Sbjct: 411 SQGCIKPLCDLLVCPDPRIVTVCLEGLENILKIGEADKDLGNTEGVNVYAQLIDEAEGLE 470

Query: 425 KIENLQSHDNNDIHEMSVKILETYW 449
           KIENLQSHDN +I+E +VKILETYW
Sbjct: 471 KIENLQSHDNTEIYEKAVKILETYW 495

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Solanum lycopersicum (taxid: 4081)

>sp|O04294|IMA2_ARATH Importin subunit alpha-2 OS=Arabidopsis thaliana GN=KAP2 PE=1 SV=2

 Score =  611 bits (1576), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 296/421 (70%), Positives = 352/421 (83%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           LP MVAG+WS+D+  QLEAT L RK+LS ++N PI +V+QSGVVPR V+FL R+D+P+LQ
Sbjct: 77  LPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNPPINEVVQSGVVPRVVKFLSRDDFPKLQ 136

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
           FEAA ALTNIASGTSENT V I+ GAVPIF++LL+S S+DVREQAVWALGNVAGDS +CR
Sbjct: 137 FEAAWALTNIASGTSENTNVIIESGAVPIFIQLLSSASEDVREQAVWALGNVAGDSPKCR 196

Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS 208
           D VLS GA+ PLL++ NE+ KLSMLR ATWTLSNFCRGKP P F Q +PAL VL +L++S
Sbjct: 197 DLVLSYGAMTPLLSQFNENTKLSMLRNATWTLSNFCRGKPPPAFEQTQPALPVLERLVQS 256

Query: 209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
            DE+VLTDAC AL+YL+D +NDKIQAVIEAGV PRL++LLGH S  VL  ALRTIGNIVT
Sbjct: 257 MDEEVLTDACWALSYLSDNSNDKIQAVIEAGVVPRLIQLLGHSSPSVLIPALRTIGNIVT 316

Query: 269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP 328
           GDD QTQ +++  AL  LL LL +N+ KSIKKE CW ISNITAGN +QIQAVIDAG+I  
Sbjct: 317 GDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKEACWTISNITAGNADQIQAVIDAGIIQS 376

Query: 329 IVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL 388
           +V +LQ AEF  KKEAAW ISNATSGGTH+QIK +V +GC+KPLCDLL CPD ++VTVCL
Sbjct: 377 LVWVLQSAEFEVKKEAAWGISNATSGGTHDQIKFMVSQGCIKPLCDLLTCPDLKVVTVCL 436

Query: 389 IGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448
             LENIL VGEAEKN  + G+ N YAQ+++EAEGLEKIENLQSHDNNDI++ +VKILET+
Sbjct: 437 EALENILVVGEAEKNLGHTGEDNLYAQMIDEAEGLEKIENLQSHDNNDIYDKAVKILETF 496

Query: 449 W 449
           W
Sbjct: 497 W 497

Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Promotes docking of import substrates to the nuclear envelope. Seems to act as a cytosolic receptor for both simple and bipartite NLS motifs.

Arabidopsis thaliana (taxid: 3702)

>sp|Q76P29|IMAB_DICDI Importin subunit alpha-B OS=Dictyostelium discoideum GN=DDB_G0272318 PE=3 SV=1

 Score =  489 bits (1258), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 247/429 (57%), Positives = 321/429 (74%), Gaps = 6/429 (1%)

Query: 22  LQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR 81
           +  + E LP++VA + S++  + L++TT FRK+LS +++ PIE+VI++G+VPR V+FL  
Sbjct: 62  INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121

Query: 82  EDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141
           +D+PQLQFEAA ALTNIASGT E T+V I++GA+ +FV LL+SP DDVREQAVWALGN+A
Sbjct: 122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181

Query: 142 GDSSRCRDFVLSQGALIPLLAELNEHA--KLSMLRTATWTLSNFCRGKPQPPFNQIRPAL 199
           GDS  CRD VLS  AL PLL+ L   A  K+SM+R ATWTLSNFCRGKPQPPF  +R +L
Sbjct: 182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241

Query: 200 RVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA 259
            VLA+LI   DE+VL DAC AL+YL+DG+N++IQ VI+A VC ++V+LLGH +  V T A
Sbjct: 242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301

Query: 260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA 319
           LRTIGNIVTGDD QTQ +++  AL +LL LL  +  ++I+KE CW ISNITAG++ QIQ 
Sbjct: 302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360

Query: 320 VIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP 379
           VIDA +I  +V LL +AEF  +KEAAW ISNATS GT +QI  LV +GCVKPLCDLL   
Sbjct: 361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query: 380 DPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHE 439
           DP+I+ V L G+ENIL  G+ E     +  VN Y +++E+A+GL KI +LQ H N D  E
Sbjct: 421 DPRIINVALEGIENILVAGKKEA---QVTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFE 477

Query: 440 MSVKILETY 448
              +I+ TY
Sbjct: 478 KVSRIISTY 486

Functions in nuclear protein import via a substrate-importin alpha-beta transport complex that passes though the nuclear pore complexes (NPC). Binds specifically and directly to substrates containing either a simple or bipartite NLS motif.

Dictyostelium discoideum (taxid: 44689)

>sp|O35345|IMA7_MOUSE Importin subunit alpha-7 OS=Mus musculus GN=Kpna6 PE=1 SV=2

 Score =  468 bits (1205), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 244/420 (58%), Positives = 309/420 (73%), Gaps = 4/420 (0%)

Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQLQFE 90
           MV  ++SDD+ +QL  T  FRK+LS + + PI++VI + GVV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 91  AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
           AA ALTNIASGTS+ TK+ I+ GAVPIF++LL S  +DV+EQAVWALGN+AGDSS CRD+
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSLCRDY 204

Query: 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN 209
           VL+   L PLL  L +  +L+M R A W LSN CRGK P P F ++ P L VL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269
           D  +L DAC AL+YL+DG N+KIQAVI++GVC RLV+LL H    V + ALR +GNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPI 329
           DD QTQ I+NC AL  LL LL  +  +SI+KE CW ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 330 VNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389
           + +LQ AEF T+KEAAW I+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
           GLENIL++GE E      G VN Y  L+EEA GL+KIE LQSH+N +I++ +  ++E Y+
Sbjct: 444 GLENILRLGEQESKRSGSG-VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q0V7M0|IMA7_BOVIN Importin subunit alpha-7 OS=Bos taurus GN=KPNA6 PE=2 SV=1

 Score =  466 bits (1200), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 244/420 (58%), Positives = 308/420 (73%), Gaps = 4/420 (0%)

Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQLQFE 90
           MV  ++SDD  +QL  T  FRK+LS + + PI++VI + GVV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDPDLQLATTQKFRKLLSKEPSPPIDEVINTPGVVDRFVEFLKRNENCTLQFE 144

Query: 91  AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
           AA ALTNIASGTS+ TK+ I+ GAVPIF++LL S  +DV+EQAVWALGN+AGDSS CRD+
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN 209
           VL+   L PLL  L +  +L+M R A W LSN CRGK P P F ++ P L VL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269
           D  +L DAC AL+YL+DG N+KIQAVI++GVC RLV+LL H    V + ALR +GNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDNKVASPALRAVGNIVTG 324

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPI 329
           DD QTQ I+NC AL  LL LL  +  +SI+KE CW ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSSKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 330 VNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389
           + +LQ AEF T+KEAAW I+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
           GLENIL++GE E      G VN Y  L+EEA GL+KIE LQSH+N +I++ +  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGSG-VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Bos taurus (taxid: 9913)

>sp|Q5RBV0|IMA7_PONAB Importin subunit alpha-7 OS=Pongo abelii GN=KPNA6 PE=2 SV=1

 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/420 (57%), Positives = 308/420 (73%), Gaps = 4/420 (0%)

Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSG-VVPRFVEFLMREDYPQLQFE 90
           MV  ++SDD+ +QL  T  FRK+LS + + PI++VI +  VV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 91  AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
           AA ALTNIASGTS+ TK+ I+ GAVPIF++LL S  +DV+EQAVWALGN+AGDSS CRD+
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN 209
           VL+   L PLL  L +  +L+M R A W LSN CRGK P P F ++ P L VL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269
           D  +L DAC AL+YL+DG N+KIQAVI++GVC RLV+LL H    V + ALR +GNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPI 329
           DD QTQ I+NC AL  LL LL  +  +SI+KE CW ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 330 VNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389
           + +LQ AEF T+KEAAW I+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
           GLENIL++GE E      G VN Y  L+EEA GL+KIE LQSH+N +I++ +  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGSG-VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Pongo abelii (taxid: 9601)

>sp|O60684|IMA7_HUMAN Importin subunit alpha-7 OS=Homo sapiens GN=KPNA6 PE=1 SV=1

 Score =  464 bits (1193), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/420 (57%), Positives = 308/420 (73%), Gaps = 4/420 (0%)

Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSG-VVPRFVEFLMREDYPQLQFE 90
           MV  ++SDD+ +QL  T  FRK+LS + + PI++VI +  VV RFVEFL R +   LQFE
Sbjct: 85  MVEMLFSDDSDLQLATTQKFRKLLSKEPSPPIDEVINTPRVVDRFVEFLKRNENCTLQFE 144

Query: 91  AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
           AA ALTNIASGTS+ TK+ I+ GAVPIF++LL S  +DV+EQAVWALGN+AGDSS CRD+
Sbjct: 145 AAWALTNIASGTSQQTKIVIEAGAVPIFIELLNSDFEDVQEQAVWALGNIAGDSSVCRDY 204

Query: 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN 209
           VL+   L PLL  L +  +L+M R A W LSN CRGK P P F ++ P L VL++L+ S+
Sbjct: 205 VLNCSILNPLLTLLTKSTRLTMTRNAVWALSNLCRGKNPPPEFAKVSPCLPVLSRLLFSS 264

Query: 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269
           D  +L DAC AL+YL+DG N+KIQAVI++GVC RLV+LL H    V + ALR +GNIVTG
Sbjct: 265 DSDLLADACWALSYLSDGPNEKIQAVIDSGVCRRLVELLMHNDYKVASPALRAVGNIVTG 324

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPI 329
           DD QTQ I+NC AL  LL LL  +  +SI+KE CW ISNITAGNR QIQAVIDA +   +
Sbjct: 325 DDIQTQVILNCSALPCLLHLL-SSPKESIRKEACWTISNITAGNRAQIQAVIDANIFPVL 383

Query: 330 VNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389
           + +LQ AEF T+KEAAW I+NATSGGT EQI++LV  GC+KPLCDLL   D +IV V L 
Sbjct: 384 IEILQKAEFRTRKEAAWAITNATSGGTPEQIRYLVSLGCIKPLCDLLTVMDSKIVQVALN 443

Query: 390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
           GLENIL++GE E      G VN Y  L+EEA GL+KIE LQSH+N +I++ +  ++E Y+
Sbjct: 444 GLENILRLGEQEGKRSGSG-VNPYCGLIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYF 502

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
356564581	530	PREDICTED: importin subunit alpha-1-like	0.964	0.877	0.750	0.0
225431871	529	PREDICTED: importin subunit alpha-1 [Vit	0.962	0.877	0.748	0.0
356556046	531	PREDICTED: importin subunit alpha-1-like	0.960	0.871	0.754	0.0
356521809	530	PREDICTED: LOW QUALITY PROTEIN: importin	0.964	0.877	0.744	0.0
356529274	531	PREDICTED: importin subunit alpha-1-like	0.964	0.875	0.751	0.0
224130302	529	predicted protein [Populus trichocarpa]	0.929	0.846	0.775	0.0
119866037	529	Impa2 [Nicotiana benthamiana]	0.927	0.844	0.775	0.0
224110258	529	predicted protein [Populus trichocarpa]	0.958	0.873	0.738	0.0
356535026	532	PREDICTED: importin subunit alpha-1-like	0.927	0.840	0.768	0.0
449464730	530	PREDICTED: importin subunit alpha-1-like	0.962	0.875	0.732	0.0

>gi|356564581|ref|XP_003550530.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  717 bits (1852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/473 (75%), Positives = 397/473 (83%), Gaps = 8/473 (1%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E LQ+QQ Q  AP  +  +  K E LP MVAGVWSDDN +QLEATT FRK+LS +R+
Sbjct: 48  KRREGLQAQQ-QFPAPLQNSTVDKKLESLPAMVAGVWSDDNSIQLEATTQFRKLLSIERS 106

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQ+GVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVK
Sbjct: 107 PPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 166

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LL+SPSDDVREQAVWALGNVAGDS RCRD VLSQGAL+PLLA+LNEHAKLSMLR ATWTL
Sbjct: 167 LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSQGALVPLLAQLNEHAKLSMLRNATWTL 226

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQPPF Q+RPAL  L +L+ SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 227 SNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 286

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           C RLV+LL H S  VL  ALRT+GNIVTGDD QTQCIIN GAL  LL LL +NH KSIKK
Sbjct: 287 CARLVQLLIHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKK 346

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN+EQIQ VI+AGL+ P+VNLLQ+AEF  KKEAAW ISNATSGG HEQI
Sbjct: 347 EACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQNAEFDIKKEAAWAISNATSGGIHEQI 406

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K+LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEK+  N GDVN+YAQ++++A
Sbjct: 407 KYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNEYAQMIDDA 466

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGRV-------VGPQPGLTYAGNE 466
           EGLEKIENLQSHDNN+I+E +VKILETYW            G QPG  +  NE
Sbjct: 467 EGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGAQPGFNFGNNE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431871|ref|XP_002275593.1| PREDICTED: importin subunit alpha-1 [Vitis vinifera] gi|296083287|emb|CBI22923.3| unnamed protein product [Vitis vinifera]

 Score =  714 bits (1844), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/473 (74%), Positives = 398/473 (84%), Gaps = 9/473 (1%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E LQ+QQF  +A A ++  + K E LP+MVAGVWSD++ +QLEATT FRK+LS +R+
Sbjct: 48  KRREGLQAQQFPAAAHASTV--EKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERS 105

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQSGVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVK
Sbjct: 106 PPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 165

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LL SPSDDVREQAVWALGNVAGDS RCRD VL  GALIPLLA+LNEHAKLSMLR ATWTL
Sbjct: 166 LLGSPSDDVREQAVWALGNVAGDSPRCRDLVLGHGALIPLLAQLNEHAKLSMLRNATWTL 225

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQPPF+Q++PAL  L +L+ S+DE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 226 SNFCRGKPQPPFDQVKPALPALERLVHSSDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           CPRLV+LL H S  VL  ALRT+GNIVTGDD QTQ IIN GAL  LL LL HNH KSIKK
Sbjct: 286 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLSLLTHNHKKSIKK 345

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN+EQIQAVI+AG+I P+V+LLQ AEF  KKEAAW ISNATSGGTHEQI
Sbjct: 346 EACWTISNITAGNKEQIQAVIEAGVIAPLVHLLQTAEFDIKKEAAWAISNATSGGTHEQI 405

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K+LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEK   N GDVN YAQL+++A
Sbjct: 406 KYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKTLGNSGDVNYYAQLIDDA 465

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGRV-------VGPQPGLTYAGNE 466
           EGLEKIENLQSHDNN+I+E +VKILETYW            G QPG  + GN+
Sbjct: 466 EGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPSGDGSQPGFQFGGND 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556046|ref|XP_003546338.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  712 bits (1838), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/476 (75%), Positives = 397/476 (83%), Gaps = 13/476 (2%)

Query: 1   KLGEFLQSQQ-FQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDR 59
           K  E LQ+QQ F     A S+ ++ K E LP MVAGVWSDDN  QLEATT FRK+LS +R
Sbjct: 48  KRREGLQAQQQFPTPLQASSI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIER 106

Query: 60  NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119
           + PIE+VIQ+GVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFV
Sbjct: 107 SPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166

Query: 120 KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWT 179
           KLL+SPSDDVREQAVWALGNVAGDS RCRD VLS GALIPLLA+LNEHAKLSMLR ATWT
Sbjct: 167 KLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWT 226

Query: 180 LSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAG 239
           LSNFCRGKPQPPF Q+R AL  L +L+ SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAG
Sbjct: 227 LSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286

Query: 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIK 299
           VCPRLV+LL H S  VL  ALRT+GNIVTGDD QTQ IIN GAL  LL LL HNH KSIK
Sbjct: 287 VCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIK 346

Query: 300 KEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ 359
           KE CW ISNITAGNR+QIQAVI+AGLI P+VNLLQ+AEF  KKEAAW ISNATSGGTHEQ
Sbjct: 347 KEACWTISNITAGNRDQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406

Query: 360 IKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEE 419
           IK+LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEK+  N GDVN YAQ+++E
Sbjct: 407 IKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNLYAQMIDE 466

Query: 420 AEGLEKIENLQSHDNNDIHEMSVKILETYW---------CGRVVGPQPGLTYAGNE 466
           AEGLEKIENLQSHDNN+I+E +VKILETYW          G   G QPG  +  N+
Sbjct: 467 AEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPAGD--GAQPGFNFGNND 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521809|ref|XP_003529543.1| PREDICTED: LOW QUALITY PROTEIN: importin subunit alpha-1-like [Glycine max]

 Score =  711 bits (1836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/473 (74%), Positives = 394/473 (83%), Gaps = 8/473 (1%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E LQ+ Q Q+ AP  +  +    E LP MVAGVWS+DN +QLEATT FRK+LS +R+
Sbjct: 48  KRREGLQAHQ-QLPAPLQNSTVDKNLESLPAMVAGVWSNDNSLQLEATTQFRKLLSIERS 106

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQ+GVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVK
Sbjct: 107 PPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 166

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LL+SPSDDVREQAVWALGNVAGDS RCRD VLS GAL+PLLA+LNEHAKLSMLR ATWTL
Sbjct: 167 LLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALVPLLAQLNEHAKLSMLRNATWTL 226

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQPPF Q+RPAL  L +L+ SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 227 SNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 286

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           CPRL++LL H S  VL  ALRT+GNIVTGDD QTQCIIN GAL  LL LL +NH KSIKK
Sbjct: 287 CPRLMQLLMHPSPSVLIPALRTVGNIVTGDDMQTQCIINHGALPCLLNLLTNNHKKSIKK 346

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN+EQIQ VI+AGL+ P+VNLLQ AEF  KKEA+W ISNATSGGTH+QI
Sbjct: 347 EACWTISNITAGNKEQIQTVIEAGLVAPLVNLLQSAEFDIKKEASWAISNATSGGTHDQI 406

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K+LV +GCVKPLCDLL CPDP+IVTVCL GLENILKVGEAEK+  N GDVN YAQ+++EA
Sbjct: 407 KYLVSQGCVKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSLGNTGDVNVYAQMIDEA 466

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGRV-------VGPQPGLTYAGNE 466
           EGLEKIENLQSHDNN+I+E  VKILETYW            G QPG  +  NE
Sbjct: 467 EGLEKIENLQSHDNNEIYEKVVKILETYWLEEEDETLPSGNGAQPGFNFGNNE 519

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529274|ref|XP_003533220.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  710 bits (1833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/474 (75%), Positives = 396/474 (83%), Gaps = 9/474 (1%)

Query: 1   KLGEFLQSQQ-FQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDR 59
           K  E LQ+QQ F     A S+ ++ K E LP MVAGVWSDDN  QLEATT FRK+LS +R
Sbjct: 48  KRREGLQAQQQFPTPLQAASI-VEKKLESLPAMVAGVWSDDNSQQLEATTQFRKLLSIER 106

Query: 60  NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119
           + PIE+VIQ+GVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFV
Sbjct: 107 SPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFV 166

Query: 120 KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWT 179
           KLL+SPSDDVREQAVWALGNVAGDS +CRD VLS GALIPLLA+LNEHAKLSMLR ATWT
Sbjct: 167 KLLSSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWT 226

Query: 180 LSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAG 239
           LSNFCRGKPQPPF Q+R AL  L +L+ SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAG
Sbjct: 227 LSNFCRGKPQPPFEQVRAALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAG 286

Query: 240 VCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIK 299
           VCPRLV+LL H S  VL  ALRT+GNIVTGDD QTQ IIN GAL  LL LL HNH KSIK
Sbjct: 287 VCPRLVQLLLHPSPSVLIPALRTVGNIVTGDDMQTQTIINHGALPCLLSLLTHNHKKSIK 346

Query: 300 KEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ 359
           KE CW ISNITAGNR+QIQAV++AGLI P+VNLLQ+AEF  KKEAAW ISNATSGGTHEQ
Sbjct: 347 KEACWTISNITAGNRDQIQAVVEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQ 406

Query: 360 IKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEE 419
           IK+LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEK+  N GDVN YAQ+++E
Sbjct: 407 IKYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKSMGNSGDVNLYAQMIDE 466

Query: 420 AEGLEKIENLQSHDNNDIHEMSVKILETYW-------CGRVVGPQPGLTYAGNE 466
           AEGLEKIENLQSHDNN+I+E +VKILETYW            G QPG  +  N+
Sbjct: 467 AEGLEKIENLQSHDNNEIYEKAVKILETYWLEDDDETLPTGDGAQPGFNFGNND 520

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130302|ref|XP_002328576.1| predicted protein [Populus trichocarpa] gi|222838558|gb|EEE76923.1| predicted protein [Populus trichocarpa]

 Score =  708 bits (1827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/449 (77%), Positives = 389/449 (86%), Gaps = 1/449 (0%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E L +QQF  +A   S N++ K E LP+MV+GVWSDD+ +QLEATT FRK+LS +R+
Sbjct: 48  KRREGLLAQQFP-AAVLSSSNMEKKLESLPSMVSGVWSDDSNLQLEATTQFRKLLSIERS 106

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQ+GVVPRFVE L+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVK
Sbjct: 107 PPIEEVIQAGVVPRFVELLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 166

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LL SPSDDVREQAVWALGNVAGDS +CRD VLS GALIPLLA+LNEHAKLSMLR ATWTL
Sbjct: 167 LLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATWTL 226

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQP F ++RPAL  L +L+ S DE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 227 SNFCRGKPQPLFEKVRPALPALERLVHSTDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 286

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           CPRLV+LL H S  VL  ALRT+GNIVTGDD QTQCIIN GAL  LL LL HNH KSIKK
Sbjct: 287 CPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIINTGALPCLLSLLTHNHKKSIKK 346

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN+EQIQAVI+AGLIGP+VNLLQ+AEF  KKEAAW +SNATSGGTHEQI
Sbjct: 347 EACWTISNITAGNKEQIQAVIEAGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHEQI 406

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEKN  N GDVN YAQ++++A
Sbjct: 407 KFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGNSGDVNFYAQMIDDA 466

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYW 449
           EGLEKIENLQSHDNN+I+E +VKILETYW
Sbjct: 467 EGLEKIENLQSHDNNEIYEKAVKILETYW 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|119866037|gb|ABM05488.1| Impa2 [Nicotiana benthamiana]

 Score =  705 bits (1819), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/449 (77%), Positives = 382/449 (85%), Gaps = 2/449 (0%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E LQ QQ    A   +  ++ K E LP+MVAGVWS+DN +QLEATT FRK+LS +R+
Sbjct: 48  KRREGLQPQQQPFPANLHTSTVEKKLESLPSMVAGVWSNDNNLQLEATTQFRKLLSIERS 107

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQSGVVPRFVEFLMRED+PQLQFEAA ALTNIASGTS+NT+V IDHGAVPIFVK
Sbjct: 108 PPIEEVIQSGVVPRFVEFLMREDFPQLQFEAAWALTNIASGTSDNTRVVIDHGAVPIFVK 167

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LL SPSDDVREQAVWALGNVAGDS RCRD VLS GALIPLLA+LNEH KLSMLR ATWTL
Sbjct: 168 LLGSPSDDVREQAVWALGNVAGDSPRCRDLVLSNGALIPLLAQLNEHTKLSMLRNATWTL 227

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQPPF Q+RPAL  L +L+ SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 228 SNFCRGKPQPPFEQVRPALSALQRLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           CPRLV+LL H S  VL  ALRT+GNIVTGDD QTQCII  GAL  LL LL HNH KSIKK
Sbjct: 288 CPRLVELLMHPSPSVLIPALRTVGNIVTGDDLQTQCIIEHGALTCLLSLLTHNHKKSIKK 347

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN+EQIQAVI+AGLI P+VNLLQ AEF  KKEAAW ISNATSGGTHEQI
Sbjct: 348 EACWTISNITAGNKEQIQAVIEAGLIAPLVNLLQTAEFDIKKEAAWAISNATSGGTHEQI 407

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEK   N G +N YAQL ++A
Sbjct: 408 KFLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKA--NTGGINYYAQLTDDA 465

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYW 449
           EGLEKIENLQSHDNN+I+E +VKILETYW
Sbjct: 466 EGLEKIENLQSHDNNEIYEKAVKILETYW 494

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110258|ref|XP_002315463.1| predicted protein [Populus trichocarpa] gi|222864503|gb|EEF01634.1| predicted protein [Populus trichocarpa]

 Score =  701 bits (1810), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/474 (73%), Positives = 393/474 (82%), Gaps = 12/474 (2%)

Query: 1   KLGEFLQSQQFQISAPAL--SLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFD 58
           K  E LQ+QQF    PA+  S N++ K E LP+MVAGVWS+D  +QLE+TT FRK+LS +
Sbjct: 48  KRREGLQAQQF---PPAILSSSNVEKKLENLPSMVAGVWSEDGNLQLESTTQFRKLLSIE 104

Query: 59  RNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIF 118
           R+ PIE+VIQ+GVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIF
Sbjct: 105 RSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIF 164

Query: 119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178
           VKLL SPSDDVREQAVWALGNVAGDS +CRD VLS GALIPLLA+LNEHAKLSMLR ATW
Sbjct: 165 VKLLGSPSDDVREQAVWALGNVAGDSPKCRDLVLSHGALIPLLAQLNEHAKLSMLRNATW 224

Query: 179 TLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
           TLSNFCRGKPQPPF Q+RPAL  L +L+ S DE+VLTD+C AL+YL+DGT+DKIQAVIEA
Sbjct: 225 TLSNFCRGKPQPPFEQVRPALPALERLVHSTDEEVLTDSCWALSYLSDGTDDKIQAVIEA 284

Query: 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI 298
           GVCPRLV+LL H S  VL  ALRT+GNIVTGDD QTQCII  GAL  LL LL HNH KSI
Sbjct: 285 GVCPRLVELLLHPSPSVLVPALRTVGNIVTGDDMQTQCIITTGALPCLLSLLTHNHKKSI 344

Query: 299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHE 358
           KKE CW ISNITAGN+EQIQAVI+ GLIGP+VNLLQ+AEF  KKEAAW +SNATSGGTHE
Sbjct: 345 KKEACWTISNITAGNKEQIQAVIENGLIGPLVNLLQNAEFDIKKEAAWAVSNATSGGTHE 404

Query: 359 QIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVE 418
           QIK LV +GC+KPLCDLL  PDP+IVTV L GLENILKVGEAEKN  N GD N YAQ+++
Sbjct: 405 QIKFLVSQGCIKPLCDLLVSPDPRIVTVSLEGLENILKVGEAEKNLGNSGDANFYAQMID 464

Query: 419 EAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV-------VGPQPGLTYAGN 465
           +AEGLEKIENLQSHDNN+I+E +VKILETYW            G Q G  + GN
Sbjct: 465 DAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEDDETLPSGDGAQQGFQFGGN 518

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535026|ref|XP_003536050.1| PREDICTED: importin subunit alpha-1-like [Glycine max]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/449 (76%), Positives = 386/449 (85%), Gaps = 2/449 (0%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E LQ QQ  + A   S  ++ K E LP+MV GVW+DDN +QLEATT FRK+LS +R+
Sbjct: 50  KRREGLQPQQ--MPASVHSSLVEKKLEHLPSMVTGVWTDDNNLQLEATTQFRKLLSIERS 107

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQ+GVV RFVEFLMRED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVK
Sbjct: 108 PPIEEVIQTGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVK 167

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LLASPSDDVREQAVWALGNVAGDS RCRD VLS GAL+PLLA+LNEHAKLSMLR ATWTL
Sbjct: 168 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTL 227

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQPPF+Q++PAL  LA+LI SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 228 SNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 287

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           CPRLV+LL H S  VL  ALRT+GNIVTGDD QTQ IIN  AL  LL LL +N+ KSIKK
Sbjct: 288 CPRLVELLLHPSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKK 347

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN++QIQAVI+A LI P+VNLLQ+AEF  KKEAAW ISNATSGG+HEQI
Sbjct: 348 EACWTISNITAGNKQQIQAVIEANLIAPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQI 407

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEA+KN  N GDVN YAQ+++EA
Sbjct: 408 KFLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDEA 467

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYW 449
           EGLEKIENLQSHDN +I+E +VKILETYW
Sbjct: 468 EGLEKIENLQSHDNTEIYEKAVKILETYW 496

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464730|ref|XP_004150082.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus] gi|449501502|ref|XP_004161385.1| PREDICTED: importin subunit alpha-1-like [Cucumis sativus]

 Score =  697 bits (1800), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/474 (73%), Positives = 394/474 (83%), Gaps = 10/474 (2%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           K  E LQ+QQF   +   +  ++ K E LP+MVAGVWSD++ +QLEATT FRK+LS +R+
Sbjct: 48  KRREGLQAQQF--PSAVHTSTVEKKLESLPSMVAGVWSDNSSLQLEATTQFRKLLSIERS 105

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
            PIE+VIQSGVVPRFVEFL+RED+PQLQFEAA ALTNIASGTSE+TKV IDHGAVPIFVK
Sbjct: 106 PPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSEHTKVVIDHGAVPIFVK 165

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
           LLASPSDDVREQAVWALGNVAGDS  CRD VL  GALIPLL++LNEHAKLSMLR ATWTL
Sbjct: 166 LLASPSDDVREQAVWALGNVAGDSPTCRDLVLRHGALIPLLSQLNEHAKLSMLRNATWTL 225

Query: 181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
           SNFCRGKPQPPF+Q++PAL  L +L+ SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGV
Sbjct: 226 SNFCRGKPQPPFDQVKPALPALERLVHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGV 285

Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
           C RLV+LL H S  VL  ALRT+GNIVTGDD QTQ I+N GAL  LLG+   NH KSIKK
Sbjct: 286 CGRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQWIVNDGALSCLLGIFTQNHKKSIKK 345

Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E CW ISNITAGN+EQIQAVI+A LI P+VNLLQ+AEF  KKEAAW ISNATSGGTHEQI
Sbjct: 346 EACWTISNITAGNKEQIQAVIEARLIPPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQI 405

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           K+LV +GC+KPLCDLL CPDP+IVTVCL GLENILKVGEAEKN    GDVN YAQ++++A
Sbjct: 406 KYLVSQGCIKPLCDLLVCPDPRIVTVCLEGLENILKVGEAEKNLGTNGDVNLYAQMIDDA 465

Query: 421 EGLEKIENLQSHDNNDIHEMSVKILETYWC--------GRVVGPQPGLTYAGNE 466
           EGLEKIENLQSHDN++I+E +VKILETYW             G QPG  + GNE
Sbjct: 466 EGLEKIENLQSHDNHEIYEKAVKILETYWLEEEDEALPATDGGAQPGFRFGGNE 519

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	482
TAIR|locus:505006475	535	IMPA-2 "importin alpha isoform	0.931	0.839	0.727	4.5e-169
TAIR|locus:2083313	532	IMPA-1 "importin alpha isoform	0.962	0.872	0.670	3.1e-163
TAIR|locus:2195351	538	IMPA-4 "AT1G09270" [Arabidopsi	0.925	0.828	0.662	4e-154
TAIR|locus:2132238	531	MOS6 "MODIFIER OF SNC1, 6" [Ar	0.923	0.838	0.651	2.6e-150
TAIR|locus:2196140	539	IMPA-6 "importin alpha isoform	0.894	0.799	0.643	1.8e-142
TAIR|locus:2155929	519	IMPA-5 "importin alpha isoform	0.912	0.847	0.594	1.8e-133
ASPGD|ASPL0000045550	553	kapA [Emericella nidulans (tax	0.881	0.768	0.589	1.9e-124
TAIR|locus:2078122	528	IMPA-7 "importin alpha isoform	0.867	0.791	0.591	8e-124
UNIPROTKB|G4MZS0	551	MGG_15072 "Importin subunit al	0.873	0.764	0.581	7.4e-121
DICTYBASE|DDB_G0272318	516	DDB_G0272318 "putative importi	0.877	0.819	0.557	6.9e-118

TAIR|locus:505006475 IMPA-2 "importin alpha isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1644 (583.8 bits), Expect = 4.5e-169, P = 4.5e-169
 Identities = 329/452 (72%), Positives = 373/452 (82%)

Query:     1 KLGEFLQSQQFQISAPA---LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSF 57
             K  E LQ+ Q    AP+    S  ++ K E LP MV GVWSDD  +QLEATT FRK+LS 
Sbjct:    48 KRREGLQANQLPQFAPSPVPASSTVEKKLESLPAMVGGVWSDDRSLQLEATTQFRKLLSI 107

Query:    58 DRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPI 117
             +R+ PIE+VI +GVVPRFVEFL REDYPQLQFEAA ALTNIASGTSENTKV I+HGAVPI
Sbjct:   108 ERSPPIEEVIDAGVVPRFVEFLTREDYPQLQFEAAWALTNIASGTSENTKVVIEHGAVPI 167

Query:   118 FVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT 177
             FV+LLAS SDDVREQAVWALGNVAGDS RCRD VL QGALIPLL++LNEHAKLSMLR AT
Sbjct:   168 FVQLLASQSDDVREQAVWALGNVAGDSPRCRDLVLGQGALIPLLSQLNEHAKLSMLRNAT 227

Query:   178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE 237
             WTLSNFCRGKPQPPF+Q+RPAL  L +LI S DE+VLTDAC AL+YL+DGTNDKIQ+VIE
Sbjct:   228 WTLSNFCRGKPQPPFDQVRPALPALERLIHSTDEEVLTDACWALSYLSDGTNDKIQSVIE 287

Query:   238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS 297
             AGV PRLV+LL H+S  VL  ALR+IGNIVTGDD QTQC+I+ GAL  LL LL HNH KS
Sbjct:   288 AGVVPRLVELLQHQSPSVLIPALRSIGNIVTGDDLQTQCVISHGALLSLLSLLTHNHKKS 347

Query:   298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH 357
             IKKE CW ISNITAGNR+QIQAV +AGLI P+VNLLQ+AEF  KKEAAW ISNATSGG+ 
Sbjct:   348 IKKEACWTISNITAGNRDQIQAVCEAGLICPLVNLLQNAEFDIKKEAAWAISNATSGGSP 407

Query:   358 EQIKHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLV 417
             +QIK++V +G VK           +I+TVCL GLENILKVGEAEK T N GDVN YAQL+
Sbjct:   408 DQIKYMVEQGVVKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKVTGNTGDVNFYAQLI 467

Query:   418 EEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
             ++AEGLEKIENLQSHDN++I+E +VKILETYW
Sbjct:   468 DDAEGLEKIENLQSHDNSEIYEKAVKILETYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA;ISS

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2083313 IMPA-1 "importin alpha isoform 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1589 (564.4 bits), Expect = 3.1e-163, P = 3.1e-163
 Identities = 319/476 (67%), Positives = 375/476 (78%)

Query:     1 KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
             K  E +Q+ Q   SA A S++   K + L  MVAGVWSDD  +QLE+TT FRK+LS +R+
Sbjct:    48 KRREGMQALQGFPSASAASVD--KKLDSLKDMVAGVWSDDPALQLESTTQFRKLLSIERS 105

Query:    61 SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
              PIE+VI +GVVPRFVEFL +EDYP +QFEAA ALTNIASGTS++TKV IDH AVPIFV+
Sbjct:   106 PPIEEVISAGVVPRFVEFLKKEDYPAIQFEAAWALTNIASGTSDHTKVVIDHNAVPIFVQ 165

Query:   121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
             LLASPSDDVREQAVWALGNVAGDS RCRD VL  GAL+PLL +LNEHAKLSMLR ATWTL
Sbjct:   166 LLASPSDDVREQAVWALGNVAGDSPRCRDLVLGCGALLPLLNQLNEHAKLSMLRNATWTL 225

Query:   181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV 240
             SNFCRGKPQP F+Q++PAL  L +LI S+DE+VLTDAC AL+YL+DGTNDKIQ VI+AGV
Sbjct:   226 SNFCRGKPQPHFDQVKPALPALERLIHSDDEEVLTDACWALSYLSDGTNDKIQTVIQAGV 285

Query:   241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
              P+LV+LL H S  VL  ALRT+GNIVTGDD QTQC+IN GAL  L  LL  NH KSIKK
Sbjct:   286 VPKLVELLLHHSPSVLIPALRTVGNIVTGDDIQTQCVINSGALPCLANLLTQNHKKSIKK 345

Query:   301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
             E CW ISNITAGN++QIQ V++A LI P+V+LLQ+AEF  KKEAAW ISNATSGG+H+QI
Sbjct:   346 EACWTISNITAGNKDQIQTVVEANLISPLVSLLQNAEFDIKKEAAWAISNATSGGSHDQI 405

Query:   361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
             K+LV +GC+K           +I+TVCL GLENILKVGEAEKN  + GD+N YAQL+++A
Sbjct:   406 KYLVEQGCIKPLCDLLVCPDPRIITVCLEGLENILKVGEAEKNLGHTGDMNYYAQLIDDA 465

Query:   421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPGLTYAGNE 466
             EGLEKIENLQSHDNN+I+E +VKILETYW             V G Q G  + GN+
Sbjct:   466 EGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDDETQQPPGVDGSQAGFQFGGNQ 521

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0005635 "nuclear envelope" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0007010 "cytoskeleton organization" evidence=RCA

GO:0010498 "proteasomal protein catabolic process" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2195351 IMPA-4 "AT1G09270" [Arabidopsis thaliana (taxid:3702)]

 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 299/451 (66%), Positives = 359/451 (79%)

Query:     3 GEFLQSQQFQISA----PALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFD 58
             G  LQ QQ  + A    P  +  ++ + E +P MV GV+SDD + QLEATT FRK+LS +
Sbjct:    52 GMMLQ-QQLPLGAGLDGPQTAAAVEKRLEGIPMMVQGVYSDDPQAQLEATTQFRKLLSIE 110

Query:    59 RNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIF 118
             R+ PI++VI++GV+PRFVEFL R D+PQLQFEAA ALTN+ASGTS++T+V I+ GAVPIF
Sbjct:   111 RSPPIDEVIKAGVIPRFVEFLGRHDHPQLQFEAAWALTNVASGTSDHTRVVIEQGAVPIF 170

Query:   119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178
             VKLL S SDDVREQAVWALGNVAGDS  CR+ VL+ GAL PLLA+LNE++KLSMLR ATW
Sbjct:   171 VKLLTSASDDVREQAVWALGNVAGDSPNCRNLVLNYGALEPLLAQLNENSKLSMLRNATW 230

Query:   179 TLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
             TLSNFCRGKP  PF Q++PAL +L QLI  NDE+VLTDAC AL+YL+DG NDKIQAVIEA
Sbjct:   231 TLSNFCRGKPPTPFEQVKPALPILRQLIYLNDEEVLTDACWALSYLSDGPNDKIQAVIEA 290

Query:   239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI 298
             GVCPRLV+LLGH+S  VL  ALRT+GNIVTGDD QTQ II  G L +L  LL  NH KSI
Sbjct:   291 GVCPRLVELLGHQSPTVLIPALRTVGNIVTGDDSQTQFIIESGVLPHLYNLLTQNHKKSI 350

Query:   299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHE 358
             KKE CW ISNITAGN+ QI+AV+ AG+I P+V+LLQ+AEF  KKEAAW ISNATSGG+HE
Sbjct:   351 KKEACWTISNITAGNKLQIEAVVGAGIILPLVHLLQNAEFDIKKEAAWAISNATSGGSHE 410

Query:   359 QIKHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVE 418
             QI++LV +GC+K           +IVTVCL GLENILKVGEA+K       VN YAQ++E
Sbjct:   411 QIQYLVTQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKEMGLNSGVNLYAQIIE 470

Query:   419 EAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
             E++GL+K+ENLQSHDNN+I+E +VKILE YW
Sbjct:   471 ESDGLDKVENLQSHDNNEIYEKAVKILERYW 501

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS;RCA

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0030581 "symbiont intracellular protein transport in host" evidence=IPI

GO:0080034 "host response to induction by symbiont of tumor, nodule or growth in host" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2132238 MOS6 "MODIFIER OF SNC1, 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1467 (521.5 bits), Expect = 2.6e-150, P = 2.6e-150
 Identities = 292/448 (65%), Positives = 352/448 (78%)

Query:     5 FLQSQQFQISAPALSLNLQSKFEI---LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNS 61
             F  S  F  +      +L S  ++   LP MVAG+WS+D+  QLEAT L RK+LS ++N 
Sbjct:    50 FTSSMAFGSATGQTEQDLSSANQLKDNLPAMVAGIWSEDSNSQLEATNLLRKLLSIEQNP 109

Query:    62 PIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKL 121
             PI +V+QSGVVPR V+FL R+D+P+LQFEAA ALTNIASGTSENT V I+ GAVPIF++L
Sbjct:   110 PINEVVQSGVVPRVVKFLSRDDFPKLQFEAAWALTNIASGTSENTNVIIESGAVPIFIQL 169

Query:   122 LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS 181
             L+S S+DVREQAVWALGNVAGDS +CRD VLS GA+ PLL++ NE+ KLSMLR ATWTLS
Sbjct:   170 LSSASEDVREQAVWALGNVAGDSPKCRDLVLSYGAMTPLLSQFNENTKLSMLRNATWTLS 229

Query:   182 NFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC 241
             NFCRGKP P F Q +PAL VL +L++S DE+VLTDAC AL+YL+D +NDKIQAVIEAGV 
Sbjct:   230 NFCRGKPPPAFEQTQPALPVLERLVQSMDEEVLTDACWALSYLSDNSNDKIQAVIEAGVV 289

Query:   242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKE 301
             PRL++LLGH S  VL  ALRTIGNIVTGDD QTQ +++  AL  LL LL +N+ KSIKKE
Sbjct:   290 PRLIQLLGHSSPSVLIPALRTIGNIVTGDDLQTQMVLDQQALPCLLNLLKNNYKKSIKKE 349

Query:   302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK 361
              CW ISNITAGN +QIQAVIDAG+I  +V +LQ AEF  KKEAAW ISNATSGGTH+QIK
Sbjct:   350 ACWTISNITAGNADQIQAVIDAGIIQSLVWVLQSAEFEVKKEAAWGISNATSGGTHDQIK 409

Query:   362 HLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE 421
              +V +GC+K           ++VTVCL  LENIL VGEAEKN  + G+ N YAQ+++EAE
Sbjct:   410 FMVSQGCIKPLCDLLTCPDLKVVTVCLEALENILVVGEAEKNLGHTGEDNLYAQMIDEAE 469

Query:   422 GLEKIENLQSHDNNDIHEMSVKILETYW 449
             GLEKIENLQSHDNNDI++ +VKILET+W
Sbjct:   470 GLEKIENLQSHDNNDIYDKAVKILETFW 497

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0034968 "histone lysine methylation" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2196140 IMPA-6 "importin alpha isoform 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 1393 (495.4 bits), Expect = 1.8e-142, P = 1.8e-142
 Identities = 278/432 (64%), Positives = 337/432 (78%)

Query:    19 SLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEF 78
             SL  +++ E +  M+AGV S+D  +QLEAT  FR++LS +RN PI +V+QSGVVP  V+F
Sbjct:    68 SLPTETRLENIQQMIAGVMSEDRDLQLEATASFRRLLSIERNPPINEVVQSGVVPHIVQF 127

Query:    79 LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
             L R+D+ QLQFEAA ALTNIASGTSENT+V ID GAVP+FVKLL+S S++VREQAVWALG
Sbjct:   128 LSRDDFTQLQFEAAWALTNIASGTSENTRVIIDSGAVPLFVKLLSSASEEVREQAVWALG 187

Query:   139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ-IRP 197
             NVAGDS +CRD VLS  A++ LLA+ +EH+KLSMLR ATWTLSNFCRGKPQP F Q  + 
Sbjct:   188 NVAGDSPKCRDHVLSCEAMMSLLAQFHEHSKLSMLRNATWTLSNFCRGKPQPAFEQQTKA 247

Query:   198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
             AL  L +L+ S DE+VLTDA  AL+YL+DGTN+KIQ VI+AGV PRLV+LL H S  VL 
Sbjct:   248 ALPALERLLHSTDEEVLTDASWALSYLSDGTNEKIQTVIDAGVIPRLVQLLAHPSPSVLI 307

Query:   258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
              ALRTIGNIVTGDD QTQ +I+  AL  LL LL + + KSIKKE CW ISNITAGN  QI
Sbjct:   308 PALRTIGNIVTGDDIQTQAVISSQALPGLLNLLKNTYKKSIKKEACWTISNITAGNTSQI 367

Query:   318 QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXX 377
             Q V  AG+I P++NLL+  EF  KKEA W ISNATSGG H+QIK LV +GC++       
Sbjct:   368 QEVFQAGIIRPLINLLEIGEFEIKKEAVWAISNATSGGNHDQIKFLVSQGCIRPLCDLLP 427

Query:   378 XXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
                 ++VTV L GLENILKVGEAEKN  N G+ N YAQ++E+A+GL+KIENLQSHDNN+I
Sbjct:   428 CPDPRVVTVTLEGLENILKVGEAEKNLGNTGNDNLYAQMIEDADGLDKIENLQSHDNNEI 487

Query:   438 HEMSVKILETYW 449
             +E +VKILE+YW
Sbjct:   488 YEKAVKILESYW 499

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0006260 "DNA replication" evidence=RCA

GO:0006306 "DNA methylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0007067 "mitosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0008283 "cell proliferation" evidence=RCA

GO:0010564 "regulation of cell cycle process" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

TAIR|locus:2155929 IMPA-5 "importin alpha isoform 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 1308 (465.5 bits), Expect = 1.8e-133, P = 1.8e-133
 Identities = 265/446 (59%), Positives = 328/446 (73%)

Query:     6 LQSQQFQISAPALSLNLQSKFEIL---PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP 62
             ++ ++ ++  P   L     FE L     M+ GV+SDD  +QLE TT FR +LSFDR+ P
Sbjct:    46 MKKRRVKVLPPDYKLISNDPFESLLEIANMITGVFSDDPSLQLEYTTRFRVVLSFDRSPP 105

Query:    63 IEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL 122
              + VI+SGVVPRFVEFL ++D P+LQFEAA ALTNIASG SE+TKV IDHG VP+FV+LL
Sbjct:   106 TDNVIKSGVVPRFVEFLKKDDNPKLQFEAAWALTNIASGASEHTKVVIDHGVVPLFVQLL 165

Query:   123 ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182
             ASP DDVREQA+W LGNVAGDS +CRDFVL+ GA IPLL +LN HA LS+LR ATWTLSN
Sbjct:   166 ASPDDDVREQAIWGLGNVAGDSIQCRDFVLNSGAFIPLLHQLNNHATLSILRNATWTLSN 225

Query:   183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242
             F RGKP PPF+ ++  L VL +L+ S+DE+VL DAC AL+ L+D +N+ IQ+VIEAGV P
Sbjct:   226 FFRGKPSPPFDLVKHVLPVLKRLVYSDDEQVLIDACWALSNLSDASNENIQSVIEAGVVP 285

Query:   243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEV 302
             RLV+LL H S +VL  ALR IGNIV+G+  QT C+INCG L  L  LL  NH + I++E 
Sbjct:   286 RLVELLQHASPVVLVPALRCIGNIVSGNSQQTHCVINCGVLPVLADLLTQNHMRGIRREA 345

Query:   303 CWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKH 362
             CW ISNITAG  EQIQ+VIDA LI  +VNL Q AEF  KKEA W ISNA+ GG+  QIK+
Sbjct:   346 CWTISNITAGLEEQIQSVIDANLIPSLVNLAQHAEFDIKKEAIWAISNASVGGSPNQIKY 405

Query:   363 LVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEG 422
             LV + C+K           +I+ V L GLE IL  GE +KN   + DVN Y+Q++E+AEG
Sbjct:   406 LVEQNCIKALCDILVCPDLRIILVSLGGLEMILIAGEVDKN---LRDVNCYSQMIEDAEG 462

Query:   423 LEKIENLQSHDNNDIHEMSVKILETY 448
             LEKIENLQ H NN+I+E +VKIL+TY
Sbjct:   463 LEKIENLQHHGNNEIYEKAVKILQTY 488

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

GO:0009407 "toxin catabolic process" evidence=RCA

ASPGD|ASPL0000045550 kapA [Emericella nidulans (taxid:162425)]

 Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
 Identities = 256/434 (58%), Positives = 324/434 (74%)

Query:    22 LQSKFEI-LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM 80
             ++S+  + LP MV GV+SD  + Q++ATT FRK+LS +RN PIE+VI++GVV RFVEFL 
Sbjct:    76 IESELNVELPEMVKGVFSDQIEAQIQATTKFRKLLSKERNPPIERVIETGVVSRFVEFL- 134

Query:    81 REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNV 140
             R  +  +QFEAA ALTNIASG+++ T+V I+ GAVPIFV+LL+SP  DVREQAVWALGN+
Sbjct:   135 RSPHTLVQFEAAWALTNIASGSAQQTQVVIEAGAVPIFVELLSSPEPDVREQAVWALGNI 194

Query:   141 AGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPAL 199
             AGDS +CRDFVL+ GAL PLL  +N+  K+SMLR ATWTLSNFCRGK PQP +N I PAL
Sbjct:   195 AGDSPQCRDFVLNAGALRPLLTLINDGRKISMLRNATWTLSNFCRGKTPQPDWNTIAPAL 254

Query:   200 RVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA 259
              VLA+LI   D++VL DAC A++YL+DG N+KIQAVIEAG+  RLV+LL H S  V T A
Sbjct:   255 PVLAKLIYMLDDEVLIDACWAISYLSDGPNEKIQAVIEAGIPRRLVELLMHASTSVQTPA 314

Query:   260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA 319
             LR++GNIVTGDD QTQ IINCGAL  LL LL    +  I+KE CW ISNITAGN  QIQ+
Sbjct:   315 LRSVGNIVTGDDVQTQVIINCGALPALLSLLSSTKD-GIRKEACWTISNITAGNSSQIQS 373

Query:   320 VIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKXXXXXXX 377
             VIDAG+I P+V+LL + +F T+KEA W ISNATSGG    +QI++LV +GC+K       
Sbjct:   374 VIDAGIIPPLVHLLANGDFKTRKEACWAISNATSGGLQKPDQIRYLVTQGCIKPLCDLLA 433

Query:   378 XXXXQIVTVCLIGLENILKVGEAEKNTDNIGD--VNQYAQLVEEAEGLEKIENLQSHDNN 435
                 +I+ V L GLENILKVGE +K     GD  VN+YA  +EEA G+EKI + Q++ N 
Sbjct:   434 CPDNKIIQVALDGLENILKVGEMDKEAGQ-GDAHVNRYALFIEEAGGMEKIHDCQNNANE 492

Query:   436 DIHEMSVKILETYW 449
             +I+  +  I+E Y+
Sbjct:   493 EIYMKAYNIIEKYF 506

GO:0006606 "protein import into nucleus" evidence=IMP

GO:0005635 "nuclear envelope" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005643 "nuclear pore" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0030261 "chromosome condensation" evidence=IEA

GO:0033554 "cellular response to stress" evidence=IEA

GO:0000087 "M phase of mitotic cell cycle" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IEA

TAIR|locus:2078122 IMPA-7 "importin alpha isoform 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1217 (433.5 bits), Expect = 8.0e-124, P = 8.0e-124
 Identities = 252/426 (59%), Positives = 314/426 (73%)

Query:    32 MVAGVWSDDNKVQLEATTLFRKMLSFDR-NSPIEKVIQSGVVPRFVEFLMREDYPQLQFE 90
             +++ +WSD+  + +EATT  R +L  +  N  +E+VIQ+G+VPRFVEFL  +D PQLQFE
Sbjct:    64 LISCIWSDERDLLIEATTQIRTLLCGEMFNVRVEEVIQAGLVPRFVEFLTWDDSPQLQFE 123

Query:    91 AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
             AA ALTNIASGTSENT+V IDHGAV I V+LL SP D VREQ VWALGN++GDS RCRD 
Sbjct:   124 AAWALTNIASGTSENTEVVIDHGAVAILVRLLNSPYDVVREQVVWALGNISGDSPRCRDI 183

Query:   151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND 210
             VL   AL  LL +LN  AKLSML  A WTLSN CRGKPQPPF+Q+  AL  LAQLIR +D
Sbjct:   184 VLGHAALPSLLLQLNHGAKLSMLVNAAWTLSNLCRGKPQPPFDQVSAALPALAQLIRLDD 243

Query:   211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD 270
             +++L   C AL YL+DG+N+KIQAVIEA VC RL+ L  HRS  V+T ALRTIGNIVTG+
Sbjct:   244 KELLAYTCWALVYLSDGSNEKIQAVIEANVCARLIGLSIHRSPSVITPALRTIGNIVTGN 303

Query:   271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIV 330
             D QTQ II+  AL  L+ LL  ++NK+I+KE CW +SNITAG + QIQAV DA +   +V
Sbjct:   304 DSQTQHIIDLQALPCLVNLLRGSYNKTIRKEACWTVSNITAGCQSQIQAVFDADICPALV 363

Query:   331 NLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTVCLIG 390
             NLLQ++E   KKEAAW I NA +GG+++QI  LV++ C+K           Q+V VCL  
Sbjct:   364 NLLQNSEGDVKKEAAWAICNAIAGGSYKQIMFLVKQECIKPLCDLLTCSDTQLVMVCLEA 423

Query:   391 LENILKVGE--AEKNTDNI-----GDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK 443
             L+ ILKVGE  + ++ + I      +VN +AQL+EEAEGLEKIE LQSH+NNDI+E +VK
Sbjct:   424 LKKILKVGEVFSSRHAEGIYQCPQTNVNPHAQLIEEAEGLEKIEGLQSHENNDIYETAVK 483

Query:   444 ILETYW 449
             ILETYW
Sbjct:   484 ILETYW 489

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM;IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISS

GO:0008565 "protein transporter activity" evidence=IEA;ISS

UNIPROTKB|G4MZS0 MGG_15072 "Importin subunit alpha" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 249/428 (58%), Positives = 313/428 (73%)

Query:    27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
             E LP MV GV+S+    Q++ATT FRK+LS +RN PIE+VI++GVV RFVEFL R  +  
Sbjct:    81 EDLPQMVQGVFSESIDAQIQATTKFRKLLSKERNPPIEEVIKTGVVSRFVEFL-RSPHTL 139

Query:    87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
             +QFEAA ALTNIASG++  T+V I+ GAVPIFV+LL SP  DVREQAVWALGN+AGDS +
Sbjct:   140 VQFEAAWALTNIASGSATQTQVVIEAGAVPIFVELLGSPEPDVREQAVWALGNIAGDSPQ 199

Query:   147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQL 205
             CRD+VLS GAL PLL  L +  KLSMLR ATWTLSNFCRGK PQP +  I PAL VLA+L
Sbjct:   200 CRDYVLSCGALKPLLNLLGDSRKLSMLRNATWTLSNFCRGKTPQPDWTTIAPALPVLAKL 259

Query:   206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
             + S D++VL DAC A++YL+DG+NDKIQAVIEAG+  RLV+LL H S  V T ALR++GN
Sbjct:   260 VYSLDDEVLIDACWAISYLSDGSNDKIQAVIEAGIPRRLVELLMHASTSVQTPALRSVGN 319

Query:   266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
             IVTGDD QTQ IINCGAL  LL LL  N +  I+KE CW ISNITAGN  QIQ+V+DA +
Sbjct:   320 IVTGDDVQTQVIINCGALPCLLSLLGSNKD-GIRKEACWTISNITAGNSAQIQSVVDANI 378

Query:   326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKXXXXXXXXXXXQI 383
             I P+++LL + +  T+KEA W ISNATSGG    +QI++LV +GC+K           +I
Sbjct:   379 IPPLIHLLSNGDLKTRKEACWAISNATSGGLQKPDQIRYLVAQGCIKPLCDLLSCPDNKI 438

Query:   384 VTVCLIGLENILKVGEAEKNTDNIGD--VNQYAQLVEEAEGLEKIENLQSHDNNDIHEMS 441
             + V L GLENILKVG+ +K     G   +N+YA  +EE  G+EKI   Q++ N +I+  +
Sbjct:   439 IQVALDGLENILKVGDLDKQAAGEGQDSINRYALFIEECGGMEKIHECQTNANEEIYMKA 498

Query:   442 VKILETYW 449
               I+E Y+
Sbjct:   499 FNIIEKYF 506

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0272318 DDB_G0272318 "putative importin subunit alpha B" [Dictyostelium discoideum (taxid:44689)]

 Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
 Identities = 239/429 (55%), Positives = 313/429 (72%)

Query:    22 LQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR 81
             +  + E LP++VA + S++  + L++TT FRK+LS +++ PIE+VI++G+VPR V+FL  
Sbjct:    62 INQRLEQLPSLVAEINSENPDLILKSTTAFRKLLSIEKSPPIEEVIKTGIVPRLVKFLYM 121

Query:    82 EDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141
             +D+PQLQFEAA ALTNIASGT E T+V I++GA+ +FV LL+SP DDVREQAVWALGN+A
Sbjct:   122 QDFPQLQFEAAWALTNIASGTPEQTRVVIENGAIQVFVLLLSSPHDDVREQAVWALGNIA 181

Query:   142 GDSSRCRDFVLSQGALIPLLAELNEHA--KLSMLRTATWTLSNFCRGKPQPPFNQIRPAL 199
             GDS  CRD VLS  AL PLL+ L   A  K+SM+R ATWTLSNFCRGKPQPPF  +R +L
Sbjct:   182 GDSHYCRDLVLSHNALPPLLSLLQNPAAIKVSMVRNATWTLSNFCRGKPQPPFEIVRASL 241

Query:   200 RVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA 259
              VLA+LI   DE+VL DAC AL+YL+DG+N++IQ VI+A VC ++V+LLGH +  V T A
Sbjct:   242 PVLAKLIYYQDEEVLIDACWALSYLSDGSNERIQEVIDAKVCRKMVELLGHPTIAVQTPA 301

Query:   260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA 319
             LRTIGNIVTGDD QTQ +++  AL +LL LL  +  ++I+KE CW ISNITAG++ QIQ 
Sbjct:   302 LRTIGNIVTGDDNQTQIVLSVQALSHLLNLL-QSPKRAIRKEACWTISNITAGDKNQIQQ 360

Query:   320 VIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXX 379
             VIDA +I  +V LL +AEF  +KEAAW ISNATS GT +QI  LV +GCVK         
Sbjct:   361 VIDANIIPSLVYLLANAEFEIQKEAAWAISNATSCGTPQQIHFLVSQGCVKPLCDLLKVS 420

Query:   380 XXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHE 439
               +I+ V L G+ENIL  G+ E     +  VN Y +++E+A+GL KI +LQ H N D  E
Sbjct:   421 DPRIINVALEGIENILVAGKKEAQ---VTGVNPYKKIIEDADGLGKIYDLQHHMNKDTFE 477

Query:   440 MSVKILETY 448
                +I+ TY
Sbjct:   478 KVSRIISTY 486

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005635 "nuclear envelope" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O35345	IMA7_MOUSE	No assigned EC number	0.5809	0.8630	0.7761	yes	no
Q19969	IMA3_CAEEL	No assigned EC number	0.4668	0.8692	0.8151	yes	no
Q5RBV0	IMA7_PONAB	No assigned EC number	0.5785	0.8630	0.7761	yes	no
Q02821	IMA1_YEAST	No assigned EC number	0.5576	0.8651	0.7693	yes	no
O94374	IMA2_SCHPO	No assigned EC number	0.5458	0.8672	0.7755	yes	no
Q76P29	IMAB_DICDI	No assigned EC number	0.5757	0.8775	0.8197	yes	no
O22478	IMA_SOLLC	No assigned EC number	0.7235	0.9190	0.8406	N/A	no
O60684	IMA7_HUMAN	No assigned EC number	0.5785	0.8630	0.7761	yes	no
Q0V7M0	IMA7_BOVIN	No assigned EC number	0.5809	0.8630	0.7761	yes	no
Q71VM4	IMA1A_ORYSJ	No assigned EC number	0.7142	0.9398	0.8612	yes	no
Q9SLX0	IMA1B_ORYSJ	No assigned EC number	0.7390	0.8962	0.8089	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	482
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	1e-178
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-31
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	5e-26
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	9e-23
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-20
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-19
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	8e-19
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	3e-09
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	4e-09
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	7e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	8e-08
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-06
pfam13646	88	pfam13646, HEAT_2, HEAT repeats	6e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	7e-06
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-05
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	4e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	8e-05
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	1e-04
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	1e-04
pfam01602	522	pfam01602, Adaptin_N, Adaptin N terminal region	0.001
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.002
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.002
pfam13513	55	pfam13513, HEAT_EZ, HEAT-like repeat	0.002
smart00185	41	smart00185, ARM, Armadillo/beta-catenin-like repea	0.003
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.003
pfam02985	31	pfam02985, HEAT, HEAT repeat	0.003

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score =  509 bits (1312), Expect = e-178
 Identities = 236/431 (54%), Positives = 305/431 (70%), Gaps = 6/431 (1%)

Query: 23  QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE 82
           Q  +  LP +   ++SDD + QL+A   FRK+LS + + PI+ VI +GVVPRFVEF+   
Sbjct: 67  QQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI 126

Query: 83  DYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG 142
               LQFEAA ALTNIASGT++ TKV +D GAVP+F++LL+S  DDVREQAVWALGN+AG
Sbjct: 127 QRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAG 186

Query: 143 DSSRCRDFVLSQGALIPLLAELNEHA-KLSMLRTATWTLSNFCRGK-PQPPFNQIRPALR 200
           DS  CRD+VL  GAL PLL  L   A  +SMLR ATWTLSN CRGK P P ++ I  AL 
Sbjct: 187 DSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALP 246

Query: 201 VLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAAL 260
           +LA+LI S D +VL DAC A++YL+DG N+KIQAV++ G+  RLV+LL H S  + T AL
Sbjct: 247 ILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL 306

Query: 261 RTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV 320
           R++GNIVTG D QTQ IINCGAL+    LL  +  ++I+KE CW ISNITAGN EQIQAV
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLL-SSPKENIRKEACWTISNITAGNTEQIQAV 365

Query: 321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPC 378
           IDA LI P+++LL  AE+  KKEA W ISNATSGG +  + I++LV +G +KPLCDLL  
Sbjct: 366 IDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV 425

Query: 379 PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIH 438
            D +I+ V L  +ENILKVGE ++      ++N YA  VE+A G++ I  LQ   N  I+
Sbjct: 426 VDNKIIEVALDAIENILKVGEQDR-LRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIY 484

Query: 439 EMSVKILETYW 449
           + +  I+E ++
Sbjct: 485 DKAYSIIEKFF 495

Length = 526

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  117 bits (295), Expect = 1e-31
 Identities = 42/122 (34%), Positives = 67/122 (54%), Gaps = 2/122 (1%)

Query: 64  EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA 123
           E VIQ+G +P  V  L   D   +Q EAA AL+N+++G ++N +  ++ G +P  V+LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59

Query: 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
           S  ++V + A+WAL N+A      +  VL  G  +P L  L + +   + + AT  LSN 
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG-VPKLVNLLDSSNEDIQKNATGALSNL 118

Query: 184 CR 185
             
Sbjct: 119 AS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score =  102 bits (255), Expect = 5e-26
 Identities = 41/114 (35%), Positives = 62/114 (54%), Gaps = 1/114 (0%)

Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
            L  L  L+ S+DE V  +A  AL+ L+ G ND IQAV+EAG  P LV+LL      V+ 
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVK 67

Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311
           AAL  + N+  G +     ++  G +  L+ LL  + N+ I+K     +SN+ +
Sbjct: 68  AALWALRNLAAGPEDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 92.8 bits (231), Expect = 9e-23
 Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 1/121 (0%)

Query: 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292
           +AVI+AG  P LV LL      V   A   + N+  G++   Q ++  G L  L+ LL  
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLL-K 59

Query: 293 NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352
           + ++ + K   W + N+ AG  +    V++AG +  +VNLL  +    +K A   +SN  
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

Query: 353 S 353
           S
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 84.7 bits (210), Expect = 7e-20
 Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 13/132 (9%)

Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377
           +AVI AG +  +V+LL  ++   ++EAAW +SN ++G  ++ I+ +V  G +  L  LL 
Sbjct: 1   EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLK 59

Query: 378 CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
             D ++V   L  L N+    E  K             +V EA G+ K+ NL    N DI
Sbjct: 60  SEDEEVVKAALWALRNLAAGPEDNK------------LIVLEAGGVPKLVNLLDSSNEDI 107

Query: 438 HEMSVKILETYW 449
            + +   L    
Sbjct: 108 QKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 83.5 bits (207), Expect = 2e-19
 Identities = 40/115 (34%), Positives = 63/115 (54%), Gaps = 2/115 (1%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
             LP +V+ + S D  VQ EA       LS   N  I+ V+++G +P  V+ L  ED  +
Sbjct: 7   GGLPALVSLLSSSDENVQREAAWALSN-LSAGNNDNIQAVVEAGGLPALVQLLKSED-EE 64

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141
           +   A  AL N+A+G  +N  + ++ G VP  V LL S ++D+++ A  AL N+A
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 82.0 bits (203), Expect = 8e-19
 Identities = 35/118 (29%), Positives = 61/118 (51%), Gaps = 2/118 (1%)

Query: 277 IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA 336
           +I  G L  L+ LL  +   ++++E  W +SN++AGN + IQAV++AG +  +V LL+  
Sbjct: 3   VIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 337 EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394
           +    K A W + N  +G    ++  ++  G V  L +LL   +  I       L N+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLI-VLEAGGVPKLVNLLDSSNEDIQKNATGALSNL 118

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 52.0 bits (126), Expect = 3e-09
 Identities = 15/40 (37%), Positives = 25/40 (62%)

Query: 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141
             EN +  +D G +P  V+LL S  ++V ++A WAL N++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 51.7 bits (125), Expect = 4e-09
 Identities = 20/40 (50%), Positives = 30/40 (75%)

Query: 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141
           + EN +  I+ GAVP  V+LL+SP ++V+E+A WAL N+A
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLA 40

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 48.6 bits (116), Expect = 7e-08
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)

Query: 85  PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNV 140
            +++  AA AL  +A G  E  + A+    +P  + LL    D+VRE A WALG +
Sbjct: 1   WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 48.2 bits (116), Expect = 8e-08
 Identities = 17/41 (41%), Positives = 26/41 (63%)

Query: 313 NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353
           + E  QAVI+AG + P+V LL   +   ++EAAW +SN  +
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 15/41 (36%), Positives = 20/41 (48%)

Query: 228 TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
           + +  QAVIEAG  P LV+LL      V   A   + N+  
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats

 Score = 43.9 bits (104), Expect = 6e-06
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 11/74 (14%)

Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
           +   +E L+ +  P+++  AARAL  +            D  A+P  ++LL  P  +VR 
Sbjct: 1   LEALLEALLSDPDPEVRAAAARALGELG-----------DPEALPALLELLKDPDPEVRR 49

Query: 132 QAVWALGNVAGDSS 145
            A  ALG +    +
Sbjct: 50  AAAEALGKLGDPEA 63

This family includes multiple HEAT repeats. Length = 88

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 59  RNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100
            +   + V+ +G +P  VE L  ED  ++  EAA AL+N++S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 18/41 (43%), Positives = 26/41 (63%)

Query: 313 NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS 353
           + E  QAV+DAG +  +V LL+  +    KEAAW +SN +S
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 60  NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS 100
               + VI++G VP  V+ L   D  ++Q EAA AL+N+A+
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPD-EEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 228 TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV 267
            ++  QAV++AG  P LV+LL      V+  A   + N+ 
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 45.1 bits (107), Expect = 8e-05
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 21/129 (16%)

Query: 47  ATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT 106
           A+ L R M++F+  S I KV+ +G V + ++ L + +   ++ EAA AL  ++S + E  
Sbjct: 210 ASLLARLMMAFE--SSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAK 267

Query: 107 KVAIDHGAVPIFVKLLASPSDDV---------REQAVWALGNVAGDSSRCRDFVLSQGAL 157
           +   D G +P  +    +PS +          +E A+ AL N+ G  S          AL
Sbjct: 268 QAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMS----------AL 317

Query: 158 IPLLAELNE 166
           I  L EL+E
Sbjct: 318 ILYLGELSE 326

Length = 2102

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 10/39 (25%), Positives = 17/39 (43%)

Query: 356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394
             E  + +V  G +  L +LL   D ++V      L N+
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 12/39 (30%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311
             Q +I  GA+  L+ LL  + ++ +++E  W +SN+ A
Sbjct: 4   NKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|216598 pfam01602, Adaptin_N, Adaptin N terminal region

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 34/167 (20%), Positives = 62/167 (37%), Gaps = 18/167 (10%)

Query: 105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-DSSRCRDFV--LSQGALIPLL 161
                +    VP   +LL+     V   AV  L  +   D       +  L +  L  LL
Sbjct: 143 KDPDLVRDFLVPELKELLSDKDPGVVSAAVALLYEIRKNDRLYLNKLLPLLVR-RLCNLL 201

Query: 162 AELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRAL 221
              N   ++ +LR     L+ +    P+ P   +   L     L+++++  VL +A + +
Sbjct: 202 TVCNPWLQVKILRL----LTRYAPQDPREPKELLEDIL----NLLQNSNNAVLYEAVKTI 253

Query: 222 AYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
            +L     + I   + A     L +LL      +   ALR +  I+ 
Sbjct: 254 IHLDP-EPELIVLAVNA-----LGRLLSSPDENLRYVALRNLNKILE 294

This family consists of the N terminal region of various alpha, beta and gamma subunits of the AP-1, AP-2 and AP-3 adaptor protein complexes. The adaptor protein (AP) complexes are involved in the formation of clathrin-coated pits and vesicles. The N-terminal region of the various adaptor proteins (APs) is constant by comparison to the C-terminal which is variable within members of the AP-2 family; and it has been proposed that this constant region interacts with another uniform component of the coated vesicles. Length = 522

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 11/39 (28%), Positives = 18/39 (46%)

Query: 356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394
           + E  + ++  G V PL  LL  PD ++       L N+
Sbjct: 1   SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 13/29 (44%), Positives = 18/29 (62%)

Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLAD 226
           A+  L QL+ S DE+V  +A  AL+ LA 
Sbjct: 13  AVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
           VRE A  ALG +AG         + +  L+P L  L +     +   A W L   
Sbjct: 3   VREAAALALGALAGGGPELLRPAVPE--LLPALLPLLKDDDDEVREAAAWALGRI 55

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55

>gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311
           DD   Q +++ G L  L+ LL     + + KE  W +SN+++
Sbjct: 1   DDENKQAVVDAGGLPALVELLKSEDEE-VVKEAAWALSNLSS 41

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185
           S   +  V+  GA +P L +L       +   A W LSN   
Sbjct: 1   SPENKQAVIEAGA-VPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

>gnl|CDD|202500 pfam02985, HEAT, HEAT repeat

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 12/27 (44%), Positives = 18/27 (66%)

Query: 115 VPIFVKLLASPSDDVREQAVWALGNVA 141
           +P+ ++LL  P  +VRE A  ALG +A
Sbjct: 2   LPLLLELLNDPDPEVREAAAEALGALA 28

The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). Length = 31

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	482
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.96
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.86
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.85
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.83
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.83
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.81
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.8
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.79
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.77
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.75
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.74
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.74
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.73
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.72
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.71
PRK09687	280	putative lyase; Provisional	99.67
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.65
PRK09687	280	putative lyase; Provisional	99.65
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.63
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.63
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.6
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.59
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.56
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.52
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.52
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.52
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.5
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.49
PTZ00429	746	beta-adaptin; Provisional	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.46
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.44
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.43
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.41
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.38
PTZ00429	746	beta-adaptin; Provisional	99.38
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.29
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.25
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.22
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.19
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.18
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.16
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.11
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.09
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.06
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.03
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.02
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.01
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.0
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	98.92
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.91
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.89
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.89
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.89
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.86
COG5369	743	Uncharacterized conserved protein [Function unknow	98.86
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.86
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	98.85
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.83
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.82
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	98.8
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.8
PF05536	543	Neurochondrin: Neurochondrin	98.79
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.77
COG5369	743	Uncharacterized conserved protein [Function unknow	98.76
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.75
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	98.75
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	98.72
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.72
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.72
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.71
KOG1824	1233	consensus TATA-binding protein-interacting protein	98.7
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.68
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.67
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.66
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.62
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.55
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	98.54
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.49
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.48
TIGR02270	410	conserved hypothetical protein. Members are found	98.46
TIGR02270	410	conserved hypothetical protein. Members are found	98.41
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.41
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	98.4
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.4
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.4
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.37
KOG2259	823	consensus Uncharacterized conserved protein [Funct	98.35
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.35
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.35
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.32
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.32
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.32
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.25
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.24
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.23
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.23
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.23
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.22
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	98.19
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.19
PF05536	543	Neurochondrin: Neurochondrin	98.17
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.11
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	98.1
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.09
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	98.07
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.05
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.03
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.03
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	98.03
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	98.03
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.0
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.98
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	97.98
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	97.97
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.92
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.92
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.91
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.9
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.89
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.88
KOG2062	929	consensus 26S proteasome regulatory complex, subun	97.87
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	97.85
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.84
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.84
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.79
KOG0567	289	consensus HEAT repeat-containing protein [General	97.76
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.72
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.72
PRK14707	2710	hypothetical protein; Provisional	97.69
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	97.67
COG5096	757	Vesicle coat complex, various subunits [Intracellu	97.67
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	97.66
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.63
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	97.6
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.58
PRK14707	2710	hypothetical protein; Provisional	97.56
KOG0567	289	consensus HEAT repeat-containing protein [General	97.55
PF05004	309	IFRD: Interferon-related developmental regulator (	97.52
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	97.52
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.5
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.5
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	97.49
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.48
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	97.47
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.38
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.35
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.35
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	97.29
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	97.29
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.27
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.21
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.18
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.12
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	97.11
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	97.11
KOG3036	293	consensus Protein involved in cell differentiation	97.09
KOG4653	982	consensus Uncharacterized conserved protein [Funct	97.08
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.05
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.99
KOG2956	516	consensus CLIP-associating protein [General functi	96.97
KOG2062	929	consensus 26S proteasome regulatory complex, subun	96.95
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.93
PF05004	309	IFRD: Interferon-related developmental regulator (	96.91
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.9
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.88
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.86
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.86
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.8
KOG1243	690	consensus Protein kinase [General function predict	96.79
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.74
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.72
KOG3036	293	consensus Protein involved in cell differentiation	96.67
KOG2956	516	consensus CLIP-associating protein [General functi	96.66
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.65
COG5116	926	RPN2 26S proteasome regulatory complex component [	96.65
KOG2025	892	consensus Chromosome condensation complex Condensi	96.59
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.55
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	96.52
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.48
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.48
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.37
KOG0414	1251	consensus Chromosome condensation complex Condensi	96.34
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	96.33
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	96.33
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	96.3
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	96.27
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.2
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.19
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	96.13
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	96.06
KOG0413	1529	consensus Uncharacterized conserved protein relate	96.05
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	96.0
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.97
COG5098	1128	Chromosome condensation complex Condensin, subunit	95.92
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.91
KOG2025	892	consensus Chromosome condensation complex Condensi	95.9
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	95.89
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	95.88
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.85
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.77
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.75
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.67
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	95.65
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	95.54
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.54
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	95.52
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	95.51
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.37
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.22
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.19
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	95.11
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	95.09
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	95.08
KOG1243	690	consensus Protein kinase [General function predict	94.96
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	94.78
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	94.6
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	94.6
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.55
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.53
PF07814	361	WAPL: Wings apart-like protein regulation of heter	94.52
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	94.5
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.48
KOG2933	334	consensus Uncharacterized conserved protein [Funct	94.41
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	94.4
KOG2137	700	consensus Protein kinase [Signal transduction mech	94.31
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.13
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	94.04
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	94.01
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	93.84
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	93.79
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	93.7
COG5116	926	RPN2 26S proteasome regulatory complex component [	93.5
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	93.42
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	93.32
KOG0413	1529	consensus Uncharacterized conserved protein relate	93.31
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	93.29
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.26
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	93.22
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	93.15
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.14
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	93.1
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.06
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	93.02
KOG2137	700	consensus Protein kinase [Signal transduction mech	92.99
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	92.95
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.75
KOG2933	334	consensus Uncharacterized conserved protein [Funct	92.57
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	92.37
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.3
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	92.08
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	91.57
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	91.49
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.1
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.88
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	90.8
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	90.68
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	90.18
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	90.16
PF04388	668	Hamartin: Hamartin protein; InterPro: IPR007483 Th	90.1
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.04
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	89.41
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	89.35
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.12
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	88.66
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	88.62
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	88.6
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.47
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	88.41
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	88.29
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	88.12
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	87.74
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	87.73
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	87.59
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	87.5
PF04869	312	Uso1_p115_head: Uso1 / p115 like vesicle tethering	87.43
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	87.36
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	86.81
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	86.56
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	86.53
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	86.11
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	85.82
PF12726	727	SEN1_N: SEN1 N terminal; InterPro: IPR024481 The y	85.74
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	85.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	85.51
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	85.43
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	85.35
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	84.85
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	84.71
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	84.55
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	84.44
KOG2005	878	consensus 26S proteasome regulatory complex, subun	84.36
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	84.07
PF12463	303	DUF3689: Protein of unknown function (DUF3689) ; I	83.56
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	83.49
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	83.01
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	82.83
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	82.79
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	82.22
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	82.03
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	81.62

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-60  Score=436.43  Aligned_cols=424  Identities=66%  Similarity=0.981  Sum_probs=403.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      .+.+++.+.|+++..+..+...++++.+.+.+++...++..|++|.++.+|...+++.++..|+|+|.|+++++.+..+.
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            78889999999999999999999999999888889999999999999999986666999999999999999999999999


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-  187 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-  187 (482)
                      +++.|.+|.|+.++.+++..+++.|+|+|+|++.+++.+|+.+.+.|++++|+.++.......+.++++|+|+|||++. 
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999999999999999999999999966555689999999999999998 


Q ss_pred             CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 043116          188 PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV  267 (482)
Q Consensus       188 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  267 (482)
                      |.........++|.|..++.+.|+++...++|++++++.+.++..+.+++.|+++.|+.+|.+.++.++..|+++++|++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            88888889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116          268 TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV  347 (482)
Q Consensus       268 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a  347 (482)
                      .+++.+++.+++.|+++.|..++...+...+|++|||+++|++.+++++++.+++.|++|.|+.+++.++.++|++|+||
T Consensus       308 tG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawa  387 (514)
T KOG0166|consen  308 TGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWA  387 (514)
T ss_pred             eccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999965477799999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHH
Q 043116          348 ISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIE  427 (482)
Q Consensus       348 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  427 (482)
                      ++|++..+++++..+|++.|+++.++++|.-.|.++...++++|.++++.++......    .+++..++++.||++.++
T Consensus       388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~----~n~~~~~IEe~ggldkiE  463 (514)
T KOG0166|consen  388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRG----TNPLAIMIEEAGGLDKIE  463 (514)
T ss_pred             HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhcccc----ccHHHHHHHHccChhHHH
Confidence            9999999999999999999999999999999999999999999999999999876532    188999999999999999


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 043116          428 NLQSHDNNDIHEMSVKILETYWCGRVVGP  456 (482)
Q Consensus       428 ~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  456 (482)
                      .|++|+|.++|+.|.++|++||.++++++
T Consensus       464 ~LQ~hen~~Iy~~A~~II~~yf~~e~~~~  492 (514)
T KOG0166|consen  464 NLQSHENEEIYKKAYKIIDTYFSEEDDED  492 (514)
T ss_pred             HhhccccHHHHHHHHHHHHHhcCCCcccc
Confidence            99999999999999999999999986554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=2e-58  Score=394.57  Aligned_cols=427  Identities=55%  Similarity=0.852  Sum_probs=398.1

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      -.-+|.|.+.+.|+|.+.+..|..-++++++.+..++++.+++.|++|.+++++......-.+..|+|+|.|+++++...
T Consensus        70 ~~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~Q  149 (526)
T COG5064          70 YSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQ  149 (526)
T ss_pred             hhhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccc
Confidence            34679999999999999999999999999999888999999999999999999954442678999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhh
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFC  184 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~  184 (482)
                      .+.+++.|.+|.++.+|.+++..++++++|+|+|++++++.+|+.+.+.|++.+++.++..+ .+..+.+++.|+|+|||
T Consensus       150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlc  229 (526)
T COG5064         150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC  229 (526)
T ss_pred             eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999543 34689999999999999


Q ss_pred             cCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116          185 RGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI  263 (482)
Q Consensus       185 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  263 (482)
                      +.. |......+...+|.|.+++.+.|+++...++|++++++....+..+.+++.|+.++|+.+|++++..++..+++.+
T Consensus       230 RGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~v  309 (526)
T COG5064         230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSV  309 (526)
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhh
Confidence            998 7778888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116          264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE  343 (482)
Q Consensus       264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~  343 (482)
                      +|+..+++.+.+.+++.|+++.+..+|+++ ...+|++|||+++|+..++.++++.+++.+++|.|+++|.+.+..++++
T Consensus       310 GNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKE  388 (526)
T COG5064         310 GNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKE  388 (526)
T ss_pred             cCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999 7899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhc
Q 043116          344 AAWVISNATSGG--THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE  421 (482)
Q Consensus       344 a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (482)
                      ||||+.|...++  .|+..++++++|++..|+++|.-.+.++.+.+++++.++++.++..... .....|.|...+++.|
T Consensus       389 ACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~-~~~nin~ya~~vE~Ag  467 (526)
T COG5064         389 ACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR-YGKNINIYAVYVEKAG  467 (526)
T ss_pred             HHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHh-ccCCccHHHHHHHhcc
Confidence            999999998865  5788999999999999999999999899999999999999988776543 2245678899998899


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116          422 GLEKIENLQSHDNNDIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       422 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  454 (482)
                      |++.+..++++.|.++|++|-.+|++||.+|+.
T Consensus       468 gmd~I~~~Q~s~n~~iy~KAYsIIe~fFgeeD~  500 (526)
T COG5064         468 GMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDA  500 (526)
T ss_pred             cHHHHHHhhhccccHHHHHHHHHHHHHcccchh
Confidence            999999999999999999999999999988754

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-46  Score=345.57  Aligned_cols=369  Identities=24%  Similarity=0.366  Sum_probs=333.8

Q ss_pred             hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           26 FEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        26 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      .|.+|.+++++. .+++.+|++|+|+|.|++++. .+..+.+++.|.+|.|++++.+++ .+++++|+|+|+|++.+++.
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~-~~v~eQavWALgNIagds~~  185 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPS-ADVREQAVWALGNIAGDSPD  185 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCc-HHHHHHHHHHHhccccCChH
Confidence            399999999997 556999999999999999988 788899999999999999999999 99999999999999999999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      +|+.+++.|++++|+.++...+. .+.+.++|+|+|+|++.......-.-..+++.|..++ ++.|+++...++|++++|
T Consensus       186 ~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll-~~~D~~Vl~Da~WAlsyL  264 (514)
T KOG0166|consen  186 CRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLL-HSTDEEVLTDACWALSYL  264 (514)
T ss_pred             HHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence            99999999999999999987765 7888999999999976622222223334788899988 889999999999999999


Q ss_pred             hcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHH
Q 043116          184 CRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALR  261 (482)
Q Consensus       184 ~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~  261 (482)
                      +...+.. +.....|++|.|+++|.+.++.++..++++++|++.+++.+.+.+++.|.++.|..++. ++...++++|||
T Consensus       265 sdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW  344 (514)
T KOG0166|consen  265 TDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW  344 (514)
T ss_pred             hcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence            9887444 44455799999999999999999999999999999999999999999999999999998 567779999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGT  340 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  340 (482)
                      +|+|++.++.++.+.+++.|++|.|+.+|++. +.++|++|+|+++|++. ++++++.++++.|+++.++++|...|..+
T Consensus       345 ~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~i  423 (514)
T KOG0166|consen  345 TISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKI  423 (514)
T ss_pred             HHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHH
Confidence            99999999999999999999999999999999 89999999999999998 78999999999999999999999899999


Q ss_pred             HHHHHHHHHHhhcCCC-------HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          341 KKEAAWVISNATSGGT-------HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       341 ~~~a~~aL~~l~~~~~-------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      ...+..++.++...+.       ......+.+.|+++++..+..+++.++..+|..++.++|...
T Consensus       424 i~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~~A~~II~~yf~~e  488 (514)
T KOG0166|consen  424 ILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYKKAYKIIDTYFSEE  488 (514)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence            9999999999976442       234566778899999999999999999999999999999654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=9.3e-46  Score=316.96  Aligned_cols=370  Identities=23%  Similarity=0.304  Sum_probs=326.7

Q ss_pred             hhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           23 QSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      +-..|.+|++++++. .+....+++|+|+|.|++++. ..+.+.+++.|.+|.++++|.+++ .+++++++|+|+|++.+
T Consensus       110 VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~-~~V~eQavWALGNiAGD  187 (526)
T COG5064         110 VIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTE-DDVREQAVWALGNIAGD  187 (526)
T ss_pred             HHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCch-HHHHHHHHHHhccccCC
Confidence            446789999999995 667888999999999999987 667788889999999999999999 89999999999999999


Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWT  179 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~  179 (482)
                      ++.+|+.+++.|++++++.++.+.-  ..+.+.+.|+|+|+|++.....+.-.-+..++.|.+++ ...|+++...|+|+
T Consensus       188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLi-ys~D~evlvDA~WA  266 (526)
T COG5064         188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLI-YSRDPEVLVDACWA  266 (526)
T ss_pred             chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHH-hhcCHHHHHHHHHH
Confidence            9999999999999999999988654  47888999999999965422111111223688888888 88899999999999


Q ss_pred             HHHhhcCCCCCChh-hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHH
Q 043116          180 LSNFCRGKPQPPFN-QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA  258 (482)
Q Consensus       180 L~~L~~~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~  258 (482)
                      +++|+......... ...|+.+.|+++|.+++..++..+++.++|+..+++.+.+.+++.|+++.+..+|+++...+++.
T Consensus       267 iSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKE  346 (526)
T COG5064         267 ISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKE  346 (526)
T ss_pred             HHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhh
Confidence            99999987433333 34688889999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhc
Q 043116          259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQD  335 (482)
Q Consensus       259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~  335 (482)
                      +||+++|+..++.++.+.+++.+++|.|+++|.+. +..+|++|||+++|..+   ..|+.++++++.|++..|+++|.-
T Consensus       347 aCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~  425 (526)
T COG5064         347 ACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDV  425 (526)
T ss_pred             hheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhc
Confidence            99999999999999999999999999999999999 99999999999999997   468889999999999999999998


Q ss_pred             CChhHHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          336 AEFGTKKEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       336 ~~~~~~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                      .+..+.+.++.++.|+...+..          ....++.+.|+++.+..+.++.+.++..++..++.++|.
T Consensus       426 ~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~fFg  496 (526)
T COG5064         426 VDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFG  496 (526)
T ss_pred             cCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHHcc
Confidence            8877888889999999876632          234555568999999999999999999999999999984

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.7e-39  Score=343.59  Aligned_cols=430  Identities=21%  Similarity=0.241  Sum_probs=356.8

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      -..|++|.++++++++++..|..|+++|.+++... .+.+..+++.|++|.|+++|++++++.+|++|+|+|++++.+++
T Consensus       186 IeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~-ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~  264 (2102)
T PLN03200        186 LEAGGVDILVKLLSSGNSDAQANAASLLARLMMAF-ESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSK  264 (2102)
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCH
Confidence            35689999999999999999999999998888765 45788899999999999999876537999999999999999999


Q ss_pred             HhHHHHHhCCChHHHHHhhCCCC---------HHHHHHHHHHHHHhhCCChh-----------hHH---HHHHhCChHHH
Q 043116          104 ENTKVAIDHGAVPIFVKLLASPS---------DDVREQAVWALGNVAGDSSR-----------CRD---FVLSQGALIPL  160 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~~~---------~~~~~~a~~~L~~l~~~~~~-----------~~~---~~~~~~~i~~l  160 (482)
                      ++++.+++.|+++.|++++.+++         ..++++|+|+|+|+|++.+.           .++   .....|.+.++
T Consensus       265 e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayl  344 (2102)
T PLN03200        265 EAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYA  344 (2102)
T ss_pred             HHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHH
Confidence            99999999999999999998654         44689999999999976433           111   12334677777


Q ss_pred             HHHHcchhhhhHH----HHHHHHHHHhhcCC-CCCChhh-------------------hhhHHHHHHHHhccCChhHHHH
Q 043116          161 LAELNEHAKLSML----RTATWTLSNFCRGK-PQPPFNQ-------------------IRPALRVLAQLIRSNDEKVLTD  216 (482)
Q Consensus       161 ~~~l~~~~~~~~~----~~a~~~L~~L~~~~-~~~~~~~-------------------~~~~~~~L~~ll~~~~~~~~~~  216 (482)
                      +..+ +..+...+    ..++|+|.+|+++. +......                   ..++++.|+.++...+.+++..
T Consensus       345 l~l~-d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~  423 (2102)
T PLN03200        345 LMVF-DSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEE  423 (2102)
T ss_pred             HHhc-CCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHH
Confidence            7777 33333333    25679999999876 3321211                   1356677888999899999999


Q ss_pred             HHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch
Q 043116          217 ACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK  296 (482)
Q Consensus       217 ~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  296 (482)
                      ++++|.+++.++.+..+.+.+.|+++.|+.+|.++++.++..++++|++++.++++....+.+.|++|.|+++|.++ +.
T Consensus       424 Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~  502 (2102)
T PLN03200        424 LIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQ  502 (2102)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CH
Confidence            99999999999889999999999999999999999999999999999999998888888999999999999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116          297 SIKKEVCWIISNITAGNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL  375 (482)
Q Consensus       297 ~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  375 (482)
                      .++++|+|+|+|++.++++ ++.++ +.|+++.|+++|++++++.++.|+++|.+++..++.+.         ++.++.+
T Consensus       503 ~iqeeAawAL~NLa~~~~q-ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~---------I~~Lv~L  572 (2102)
T PLN03200        503 KAKEDSATVLWNLCCHSED-IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAAT---------ISQLTAL  572 (2102)
T ss_pred             HHHHHHHHHHHHHhCCcHH-HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhH---------HHHHHHH
Confidence            9999999999999986545 45555 78999999999999999999999999999998766553         3667888


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC-
Q 043116          376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV-  454 (482)
Q Consensus       376 l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~-  454 (482)
                      +.++++.++..++.++.+++...+....         ..+.....|+++.|.+|+.++++++++.|.++|.+||.+... 
T Consensus       573 Llsdd~~~~~~aL~vLgnIlsl~~~~d~---------~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~  643 (2102)
T PLN03200        573 LLGDLPESKVHVLDVLGHVLSVASLEDL---------VREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDL  643 (2102)
T ss_pred             hcCCChhHHHHHHHHHHHHHhhcchhHH---------HHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHH
Confidence            9999999999999999999876555321         122334579999999999999999999999999999985533 


Q ss_pred             ----------CCCCCCccCCCCCCcccCCcc
Q 043116          455 ----------GPQPGLTYAGNEGEDALGSNV  475 (482)
Q Consensus       455 ----------~~~~~~~~~~~~~~~~~~~~~  475 (482)
                                +|+..+.+.++...+..||-.
T Consensus       644 ~~avv~agaIpPLV~LLss~~~~v~keAA~A  674 (2102)
T PLN03200        644 CESLATDEIINPCIKLLTNNTEAVATQSARA  674 (2102)
T ss_pred             HHHHHHcCCHHHHHHHHhcCChHHHHHHHHH
Confidence                      477777777777666666544

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.1e-37  Score=325.63  Aligned_cols=419  Identities=19%  Similarity=0.198  Sum_probs=369.7

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      ...++++.|+.++...+.+.|..++++|.+++.++ .+..+.+.+.|++|.|+++|.+++ +.+|..|++++++++..++
T Consensus       401 ~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s-~~iQ~~A~~~L~nLa~~nd  478 (2102)
T PLN03200        401 NHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSS-EQQQEYAVALLAILTDEVD  478 (2102)
T ss_pred             HhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCH
Confidence            35578899999999999999999999999999876 677899999999999999999998 8999999999999999889


Q ss_pred             HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      +++..+++.|++|.|+++|.+++..+++.|+|+|+|++.+.+..+..+.+.|++++|+.++ ++.+...+..++|+|.++
T Consensus       479 enr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL-~sgd~~~q~~Aa~AL~nL  557 (2102)
T PLN03200        479 ESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLL-KNGGPKGQEIAAKTLTKL  557 (2102)
T ss_pred             HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988777888888899999999999 666889999999999999


Q ss_pred             hcCCCCCC------------------------------------h--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          184 CRGKPQPP------------------------------------F--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       184 ~~~~~~~~------------------------------------~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      +.......                                    .  ....++++.|..+++++++.++..++++|.+++
T Consensus       558 i~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~  637 (2102)
T PLN03200        558 VRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF  637 (2102)
T ss_pred             HhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            75431110                                    0  002468999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHH
Q 043116          226 DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW  304 (482)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~  304 (482)
                      ....+..+.++..|+++.++.+|++.+.+++..++++|++++.+.. .+...+++.|+++.|++++++. +.+++..|+.
T Consensus       638 a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~-d~~v~e~Al~  716 (2102)
T PLN03200        638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSS-SIEVAEQAVC  716 (2102)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCC-ChHHHHHHHH
Confidence            9988888889999999999999999999999999999999997543 4445678999999999999998 9999999999


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHH--HHHHHHcCChHHHHhcCCCCCHH
Q 043116          305 IISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKPLCDLLPCPDPQ  382 (482)
Q Consensus       305 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~  382 (482)
                      +|.|++.. ++....+...|+++.|++++++++++.|++|+++|.+++..++.+.  ...+...|.+..|+++|+..|.+
T Consensus       717 ALanLl~~-~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~  795 (2102)
T PLN03200        717 ALANLLSD-PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLD  795 (2102)
T ss_pred             HHHHHHcC-chHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcc
Confidence            99999975 4456778888999999999999999999999999999998776554  35667789999999999998887


Q ss_pred             HHHH--HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116          383 IVTV--CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       383 v~~~--~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  452 (482)
                      ....  ++++|..+.+.......     ..++|.-.++..++++.|.....+.+|.++++|.++|+++-.+.
T Consensus       796 ~~~~~~al~~l~~l~~~~~~~~~-----~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~~~  862 (2102)
T PLN03200        796 SSATSEALEALALLARTKGGANF-----SHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCRDQ  862 (2102)
T ss_pred             hhhHHHHHHHHHHHHhhcccCCC-----CCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhccC
Confidence            7665  99999999986555432     35778888888999999977779999999999999999987765

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.9e-31  Score=231.13  Aligned_cols=362  Identities=21%  Similarity=0.228  Sum_probs=316.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .+..+..++++.++.+|..+...+.|++-.  .++.-.+++-+++..|+.-+..+. .++|..++.|++|++. .++++.
T Consensus        86 s~epvl~llqs~d~~Iq~aa~~alGnlAVn--~enk~liv~l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT-~d~nk~  161 (550)
T KOG4224|consen   86 SNEPVLALLQSCDKCIQCAAGEALGNLAVN--MENKGLIVSLLGLDLLILQMMTDG-VEVQCNAVGCITNLAT-FDSNKV  161 (550)
T ss_pred             hhhHHHHHHhCcchhhhhhhhhhhccceec--cCCceEEEeccChHHHHHHhcCCC-cEEEeeehhhhhhhhc-cccchh
Confidence            467778888999999999999999999876  344555667778888777666666 6999999999999998 478888


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      .+...|++.+++++-++.+..++..+..+|.|++ +..+.|+.++..|++|.|+.++ +..+..++..++.+++++.-+.
T Consensus       162 kiA~sGaL~pltrLakskdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll-~s~d~dvqyycttaisnIaVd~  239 (550)
T KOG4224|consen  162 KIARSGALEPLTRLAKSKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLL-KSGDLDVQYYCTTAISNIAVDR  239 (550)
T ss_pred             hhhhccchhhhHhhcccchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhh-ccCChhHHHHHHHHhhhhhhhH
Confidence            9999999999999888999999999999999998 5556788999999999999999 8889999999999999999876


Q ss_pred             CCCChhhhh--hHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          188 PQPPFNQIR--PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       188 ~~~~~~~~~--~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                      .........  .++|.|++++.++++.++-.+..+|++++... ++...+++.|.+|.++++++++.-+.......|+.|
T Consensus       240 ~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt-~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrn  318 (550)
T KOG4224|consen  240 RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDT-EYQREIVEAGSLPLLVELLQSPMGPLILASVACIRN  318 (550)
T ss_pred             HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccc-hhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhh
Confidence            434333333  49999999999999999999999999999654 466679999999999999999988888889999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 043116          266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAA  345 (482)
Q Consensus       266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~  345 (482)
                      ++-+ +-..-.+.+.|++.+|+.+|+.+++.+++..|..+|.|++..+......+.+.|.+|.+..++.++..+++....
T Consensus       319 isih-plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseis  397 (550)
T KOG4224|consen  319 ISIH-PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEIS  397 (550)
T ss_pred             cccc-cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHH
Confidence            9874 433455788999999999999997778999999999999987788888999999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116          346 WVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE  399 (482)
Q Consensus       346 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~  399 (482)
                      .++..++.+  ......+.+.|.++.|+.+..+.+.+++-.+..+|.++....+
T Consensus       398 ac~a~Lal~--d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~  449 (550)
T KOG4224|consen  398 ACIAQLALN--DNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVE  449 (550)
T ss_pred             HHHHHHHhc--cccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhH
Confidence            999999884  4556788999999999999999999999999999999986533

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-30  Score=225.53  Aligned_cols=365  Identities=20%  Similarity=0.270  Sum_probs=317.3

Q ss_pred             hhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           22 LQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        22 ~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      ++-.++++..|+.-+.++...+|..+..++.+++..  .+....+...|.+.++.++-++.+ ..+|..+..+|.+++. 
T Consensus       121 liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~--d~nk~kiA~sGaL~pltrLakskd-irvqrnatgaLlnmTh-  196 (550)
T KOG4224|consen  121 LIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF--DSNKVKIARSGALEPLTRLAKSKD-IRVQRNATGALLNMTH-  196 (550)
T ss_pred             EEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc--ccchhhhhhccchhhhHhhcccch-hhHHHHHHHHHHHhhh-
Confidence            345677888899888889899999999999999998  456777889999999999888888 8999999999999986 


Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC--ChHHHHHHHcchhhhhHHHHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG--ALIPLLAELNEHAKLSMLRTATWT  179 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~--~i~~l~~~l~~~~~~~~~~~a~~~  179 (482)
                      +.++|+.++..|++|.|+.++++.++.++..|..+++|++.+ ...|+.+.+.+  .++.|+.++ +++++.++..|..+
T Consensus       197 s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lm-d~~s~kvkcqA~lA  274 (550)
T KOG4224|consen  197 SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLM-DDGSDKVKCQAGLA  274 (550)
T ss_pred             hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHH-hCCChHHHHHHHHH
Confidence            899999999999999999999999999999999999999855 44678888888  899999999 88889999999999


Q ss_pred             HHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC-hhhHHH
Q 043116          180 LSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS-RLVLTA  258 (482)
Q Consensus       180 L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~~v~~~  258 (482)
                      |.+++.+..........|.+|.++++++++-.........|+.|++-+.- +...+.+.|++..|+.+|..++ ++++..
T Consensus       275 Lrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqch  353 (550)
T KOG4224|consen  275 LRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCH  353 (550)
T ss_pred             HhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhh
Confidence            99999987666666678999999999999888888888899999996644 3346888999999999998865 459999


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116          259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF  338 (482)
Q Consensus       259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  338 (482)
                      |..+|+|++...+.....+.+.|.++.+..++.++ ...++.+...+++.++.. ......+.+.|+++.|+.+..+.+.
T Consensus       354 AvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t~s~s~  431 (550)
T KOG4224|consen  354 AVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWTGSESE  431 (550)
T ss_pred             HHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeecccCccch
Confidence            99999999998888888899999999999999999 888999999999999864 3446788999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHc------CChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          339 GTKKEAAWVISNATSGGTHEQIKHLVRE------GCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~------~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      +++-+++.||.|++.  +.++...+++.      |.-..|...+.+.+--++..+.+.+..+++.
T Consensus       432 Ev~gNaAaAL~Nlss--~v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  432 EVRGNAAAALINLSS--DVEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLED  494 (550)
T ss_pred             hhcccHHHHHHhhhh--hhHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHh
Confidence            999999999999998  55555555552      5556677777777777777788888888764

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=4.1e-26  Score=224.16  Aligned_cols=377  Identities=19%  Similarity=0.214  Sum_probs=310.8

Q ss_pred             hhhcccchhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHH
Q 043116           10 QFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQF   89 (482)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~   89 (482)
                      .++-+.+...+....+.+.++.|+++|.+++.++...++..|.+++..  .++...|...|+++.|.+++.+++ .+++.
T Consensus       273 LlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~--~ENK~~m~~~giV~kL~kLl~s~~-~~l~~  349 (708)
T PF05804_consen  273 LLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF--KENKDEMAESGIVEKLLKLLPSEN-EDLVN  349 (708)
T ss_pred             HHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHhcCCC-HHHHH
Confidence            344444555555677889999999999999999999999999999987  567899999999999999999998 89999


Q ss_pred             HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh
Q 043116           90 EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK  169 (482)
Q Consensus        90 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  169 (482)
                      .++++|.|++. +++.|..+++.|++|.|+.++.++  ..+..|+.+|.++|.+ +..+..+...++++.++.++...++
T Consensus       350 ~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~d-d~~r~~f~~TdcIp~L~~~Ll~~~~  425 (708)
T PF05804_consen  350 VALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMD-DEARSMFAYTDCIPQLMQMLLENSE  425 (708)
T ss_pred             HHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccC-HhhHHHHhhcchHHHHHHHHHhCCC
Confidence            99999999987 789999999999999999999754  4667799999999965 4578889999999999999877777


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh
Q 043116          170 LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL  248 (482)
Q Consensus       170 ~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  248 (482)
                      +.+...+++.+.|++......+.....++++.|+.... ..++    ..+..++|++.+++.....+.  +++..|+..+
T Consensus       426 ~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v  499 (708)
T PF05804_consen  426 EEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHDGPLKELFV--DFIGDLAKIV  499 (708)
T ss_pred             ccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHh
Confidence            77888899999999998755544444577888776644 3333    245689999988754433332  5778888888


Q ss_pred             CC-CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043116          249 GH-RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNREQIQAVIDAGLI  326 (482)
Q Consensus       249 ~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  326 (482)
                      .. .+++....++++|+|+...+......+.+.+++|.+.+.|..+. .+++.-+++..++.++. ++.....+.+.|++
T Consensus       500 ~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli  578 (708)
T PF05804_consen  500 SSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS-DPECAPLLAKSGLI  578 (708)
T ss_pred             hcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-CHHHHHHHHhCChH
Confidence            66 46789999999999999866666666667899999999997653 45789999999998885 56767777899999


Q ss_pred             HHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhcc
Q 043116          327 GPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLV-REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEK  402 (482)
Q Consensus       327 ~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~  402 (482)
                      +.|++++..  +|.++....++++..+..+  ++.+..+. +.++...|++++++.|+.++..|-.+|.-+.++.+...
T Consensus       579 ~~Li~LL~~kqeDdE~VlQil~~f~~ll~h--~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~  655 (708)
T PF05804_consen  579 PTLIELLNAKQEDDEIVLQILYVFYQLLFH--EETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWA  655 (708)
T ss_pred             HHHHHHHHhhCchHHHHHHHHHHHHHHHcC--hHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            999999984  5789999999999999986  34444554 57899999999999999999999999999998877654

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.96  E-value=3.2e-25  Score=217.97  Aligned_cols=391  Identities=20%  Similarity=0.200  Sum_probs=318.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116           30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVA  109 (482)
Q Consensus        30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  109 (482)
                      +++-.+++..+. +...++..|.|++..  ......|...|+++.|+++|++++ .++...++.+|.+++- ..+++..+
T Consensus       253 kk~~~l~~kQeq-Llrv~~~lLlNLAed--~~ve~kM~~~~iV~~Lv~~Ldr~n-~ellil~v~fLkkLSi-~~ENK~~m  327 (708)
T PF05804_consen  253 KKLQTLIRKQEQ-LLRVAFYLLLNLAED--PRVELKMVNKGIVSLLVKCLDREN-EELLILAVTFLKKLSI-FKENKDEM  327 (708)
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHHHHhcC--hHHHHHHHhcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHcC-CHHHHHHH
Confidence            444444445443 444678899999987  456778889999999999999998 8999999999999988 78899999


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116          110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ  189 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  189 (482)
                      .+.|+++.|.+++.+++..++..++++|.|++.+ +..|..+++.|++|.++.++.+   +..+..++.+|++++.....
T Consensus       328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d---~~~~~val~iLy~LS~dd~~  403 (708)
T PF05804_consen  328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKD---PNFREVALKILYNLSMDDEA  403 (708)
T ss_pred             HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCC---CchHHHHHHHHHHhccCHhh
Confidence            9999999999999999999999999999999944 5679999999999999999943   34556799999999998766


Q ss_pred             CChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          190 PPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       190 ~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      .......+++|.+++++. .+++.+...++..+.|++... ...+.+++.++++.|+........   ...+..+.|++.
T Consensus       404 r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~-rnaqlm~~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~  479 (708)
T PF05804_consen  404 RSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNK-RNAQLMCEGNGLQSLMKRALKTRD---PLLLKLIRNISQ  479 (708)
T ss_pred             HHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCH-HHHHHHHhcCcHHHHHHHHHhccc---HHHHHHHHHHHh
Confidence            666666789999998765 456777778888899999655 466788888889999887644332   224578999998


Q ss_pred             CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHH
Q 043116          269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAW  346 (482)
Q Consensus       269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~  346 (482)
                      +.+.....+.  +.+..|+.++..+++.+...++.++|+|+...+.+..+.+-+.+++|.+.++|..+  ++++..+++.
T Consensus       480 h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi  557 (708)
T PF05804_consen  480 HDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVI  557 (708)
T ss_pred             cCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHH
Confidence            7755444343  57888888888877889999999999999876544334444689999999999853  5678999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC--CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          347 VISNATSGGTHEQIKHLVREGCVKPLCDLLPC--PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       347 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      .++.++.  ++..+..+.+.|+++.|++++..  +|.+++..++.++.+++...+..            ..++.+.+...
T Consensus       558 ~~gtla~--d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr------------~~ll~~~~~~~  623 (708)
T PF05804_consen  558 LLGTLAS--DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR------------EVLLKETEIPA  623 (708)
T ss_pred             HHHHHHC--CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH------------HHHHhccchHH
Confidence            9999987  77888898999999999999975  56789999999999999876653            45567789999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      .+.+++++.|++|++.|..++.-..
T Consensus       624 ylidL~~d~N~~ir~~~d~~Ldii~  648 (708)
T PF05804_consen  624 YLIDLMHDKNAEIRKVCDNALDIIA  648 (708)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            9999999999999988888776543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=1.3e-18  Score=166.94  Aligned_cols=389  Identities=20%  Similarity=0.273  Sum_probs=311.4

Q ss_pred             cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           28 ILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        28 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      .+..|++.++.+ |+..|++|+.-|+.++...+.+...-+--.-++|.|+.+|+++++.++...|+++|.+++.-.|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            578899999866 9999999999999999877555555444556899999999999889999999999999999999999


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          107 KVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      ..+++.+.||.|+.-|. -+...+.++++.+|-.|++..+   ..+.+.|.+...+..+ +.....+++.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~Lsyl-DFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYL-DFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            99999999999998554 5778999999999999997654   3578999999999999 88889999999999999999


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhhCCCC----hhhHHH
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD---GTNDKIQAVIEAGVCPRLVKLLGHRS----RLVLTA  258 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~  258 (482)
                      .-+...+..+...+|.|..+|+..|....+.++-|+..+++   +.++..+.++..+++....+++.-..    ..+...
T Consensus       324 si~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~  403 (1051)
T KOG0168|consen  324 SIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTG  403 (1051)
T ss_pred             cCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhH
Confidence            98888888889999999999999999999999999999984   45677888888999999999886542    335566


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-------------chhHHHHHH----------------------
Q 043116          259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-------------NKSIKKEVC----------------------  303 (482)
Q Consensus       259 a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------------~~~v~~~a~----------------------  303 (482)
                      .++.+..++.+.+-....+.+.++...+..++....             .|.-..+..                      
T Consensus       404 vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~  483 (1051)
T KOG0168|consen  404 VIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSANASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSL  483 (1051)
T ss_pred             HHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCcccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhh
Confidence            778888888887877777777777777777774310             000000000                      


Q ss_pred             ------------------------------HHHHH----------------------HhcCCHHHHHHHHHcCChHHHHH
Q 043116          304 ------------------------------WIISN----------------------ITAGNREQIQAVIDAGLIGPIVN  331 (482)
Q Consensus       304 ------------------------------~~L~n----------------------l~~~~~~~~~~l~~~~~i~~L~~  331 (482)
                                                    ..+..                      +....|+..+.+.+ .++|.|++
T Consensus       484 ~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~~-~llpVLve  562 (1051)
T KOG0168|consen  484 IYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINEDTGTSRKQQDKLNGSAREGLLKNQPELLQSFGK-DLLPVLVE  562 (1051)
T ss_pred             hcccccccccccccCccccccccccchhhhhhhhhhccCcccchhhhhhcCCchhhhhhhcCHHHHHHHHH-HHHHHHHH
Confidence                                          11110                      00112233333443 47888999


Q ss_pred             HHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCc
Q 043116          332 LLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGD  409 (482)
Q Consensus       332 ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~  409 (482)
                      ++.+ .++.|+..++.||..+....+.+.+..++.. .+-..+..++.+.+..+..-++....-+++.-           
T Consensus       563 VYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~vSS~lAG~lsskD~~vlVgALQvAEiLmeKl-----------  631 (1051)
T KOG0168|consen  563 VYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNVSSHLAGMLSSKDLTVLVGALQVAEILMEKL-----------  631 (1051)
T ss_pred             HHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchHHHHHHhhhhcCCCeeEeehHHHHHHHHHHh-----------
Confidence            8874 6899999999999999998888888887765 56667888999999999989999888888743           


Q ss_pred             ccHHHHHHHHhchHHHHHHhhcC
Q 043116          410 VNQYAQLVEEAEGLEKIENLQSH  432 (482)
Q Consensus       410 ~~~~~~~l~~~~~~~~l~~l~~~  432 (482)
                      ++.|...|++.|.+..+.+|...
T Consensus       632 pd~F~~~F~REGV~~~v~~L~~~  654 (1051)
T KOG0168|consen  632 PDTFSPSFRREGVFHAVKQLSVD  654 (1051)
T ss_pred             HHHhhhhHhhhhHHHHHHHHhcc
Confidence            34578889999999999999763

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.85  E-value=1.5e-18  Score=167.03  Aligned_cols=365  Identities=20%  Similarity=0.231  Sum_probs=287.2

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh--hH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR--CR  148 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~--~~  148 (482)
                      -+|-.+.+|.+.+ +.++..|+..+..+|..+.+.+..+.+.|+|+.|+.++.+.+.+++.+|+++|.|+..+...  .+
T Consensus       234 ~lpe~i~mL~~q~-~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NK  312 (717)
T KOG1048|consen  234 TLPEVISMLMSQD-PSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNK  312 (717)
T ss_pred             ccHHHHHHHhccC-hhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccc
Confidence            3677889999999 89999999999999999999999999999999999999999999999999999999966554  67


Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC--------------ChhHH
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN--------------DEKVL  214 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~--------------~~~~~  214 (482)
                      -.+.+.++++.+++++....|.++++.+..+|+||++.+ .....+....++.|..-+-.+              +.++.
T Consensus       313 lai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf  391 (717)
T KOG1048|consen  313 LAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTVF  391 (717)
T ss_pred             hhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHHHHHHHHHhhcccccccCCCCcccccccceee
Confidence            788899999999999988899999999999999999983 455556667777766544311              25678


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCChh-----h---------
Q 043116          215 TDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGDDF-----Q---------  273 (482)
Q Consensus       215 ~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~-----~---------  273 (482)
                      ..+..||+|++....+..+.+.+. |.+..|+..+++      .+..-.++|..++.|++..-+.     .         
T Consensus       392 ~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~  471 (717)
T KOG1048|consen  392 RNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIAR  471 (717)
T ss_pred             ehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccc
Confidence            899999999998777777777776 889999888753      4566788888899998753220     0         


Q ss_pred             -----------------HHH----------------------HHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116          274 -----------------TQC----------------------IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR  314 (482)
Q Consensus       274 -----------------~~~----------------------l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  314 (482)
                                       .+.                      ++...++..-+.+|....+..+.+.++.+|-|++.+..
T Consensus       472 ~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~  551 (717)
T KOG1048|consen  472 LPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLW  551 (717)
T ss_pred             cccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCC
Confidence                             000                      11112344445555544477889999999999998432


Q ss_pred             ---HH-HHHH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC------HHH
Q 043116          315 ---EQ-IQAV-IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD------PQI  383 (482)
Q Consensus       315 ---~~-~~~l-~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~------~~v  383 (482)
                         .. ...+ .+..+++.|+++++.++..+...++.+|.|++.  ++.+. .++..++++.|++.|....      .++
T Consensus       552 ~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~--d~rnk-~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  552 TWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSR--DIRNK-ELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhcc--Cchhh-hhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence               22 2334 467899999999999999999999999999998  44443 4455889999999997533      478


Q ss_pred             HHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCC
Q 043116          384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       384 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~  452 (482)
                      ...++..|.+++......            ..-+.+.++++.|..|..+ .++++.+.|..++..+|...
T Consensus       629 v~~vc~tl~niv~~~~~n------------Akdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLN------------AKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHHHHHhHHHHHHHhHHH------------HHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            888999999998654332            4445589999999999654 56789999999999888654

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.83  E-value=3.9e-17  Score=159.76  Aligned_cols=369  Identities=16%  Similarity=0.193  Sum_probs=282.3

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116           73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL  152 (482)
Q Consensus        73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  152 (482)
                      +.+...+++.+ .+....++.+|..+... ......  ..+..+.|...|.++++.+|..+++.++++..++....+.+.
T Consensus        41 ~~lf~~L~~~~-~e~v~~~~~iL~~~l~~-~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSN-REQVELICDILKRLLSA-LSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcC-hHHHHHHHHHHHHHHhc-cCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34778888777 67778888899988772 233222  346789999999999999999999999999988877778888


Q ss_pred             HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHH
Q 043116          153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKI  232 (482)
Q Consensus       153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~  232 (482)
                      +.++++.++..+ .+++..+...|..+|..++...+........+..+.|..++..+++.++..++.++.+++..+++..
T Consensus       117 ~~~l~~~i~~~L-~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~  195 (503)
T PF10508_consen  117 DNELLPLIIQCL-RDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA  195 (503)
T ss_pred             CccHHHHHHHHH-cCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH
Confidence            889999999999 8889999999999999999876544333345668889999988888999999999999999999999


Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh-----HHHHHHHHHH
Q 043116          233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS-----IKKEVCWIIS  307 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-----v~~~a~~~L~  307 (482)
                      ..+.+.|+++.++..+.++|.-++.+++.+|..++. .+...+.+.+.|+++.|..++.+.....     .-.......+
T Consensus       196 ~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g  274 (503)
T PF10508_consen  196 EAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFG  274 (503)
T ss_pred             HHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHH
Confidence            999999999999999999999999999999999999 6666788999999999999997753222     1122335666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHH-HHc-----CChHHHHhcCCCCCH
Q 043116          308 NITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHL-VRE-----GCVKPLCDLLPCPDP  381 (482)
Q Consensus       308 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l-~~~-----~~l~~L~~ll~~~~~  381 (482)
                      +++...+..+.... ..++..+.+++.+.|+..+..|..+++.++.  +.+....+ ...     .++..+.....++..
T Consensus       275 ~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs--t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  275 NLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS--TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC--CHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            67664444333222 2467777788889999999999999999986  56666666 332     246666666777888


Q ss_pred             HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH-HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          382 QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE-KIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       382 ~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      +++.+++.+|.+++...+......-....+.+...+. .+... .+..+...|.++++..+..++..++.-
T Consensus       352 ~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~-~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  352 ELKLRALHALASILTSGTDRQDNDILSITESWYESLS-GSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc-CCchHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence            9999999999999976554211100000111222221 12334 788888999999999999999887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.83  E-value=2.7e-18  Score=165.36  Aligned_cols=369  Identities=20%  Similarity=0.221  Sum_probs=285.1

Q ss_pred             hhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           24 SKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        24 ~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      +..-.+|..+.+|.+.++.+|..|+..+..++..+ +.....+-+-|+++.|+.++.+.+ .+++.+|+++|.|+..+..
T Consensus       230 w~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~-~evq~~acgaLRNLvf~~~  307 (717)
T KOG1048|consen  230 WRDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRN-DEVQRQACGALRNLVFGKS  307 (717)
T ss_pred             ccccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCc-HHHHHHHHHHHHhhhcccC
Confidence            44456899999999999999999999999998876 555667778999999999999999 9999999999999998665


Q ss_pred             H--hHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc-h------------
Q 043116          104 E--NTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE-H------------  167 (482)
Q Consensus       104 ~--~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-~------------  167 (482)
                      .  ++-.+.+.++++.++++++. .|.++++....+|+||+..+ .++..++.. .+..|...+.. +            
T Consensus       308 ~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~  385 (717)
T KOG1048|consen  308 TDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKA  385 (717)
T ss_pred             CcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHHHH-HHHHHHHhhcccccccCCCCccccc
Confidence            5  88889999999999999985 89999999999999999663 455554443 46666555432 1            


Q ss_pred             hhhhHHHHHHHHHHHhhcCCC--CCChhhhhhHHHHHHHHhc------cCChhHHHHHHHHHHHhccCCc-----HH---
Q 043116          168 AKLSMLRTATWTLSNFCRGKP--QPPFNQIRPALRVLAQLIR------SNDEKVLTDACRALAYLADGTN-----DK---  231 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~~L~~ll~------~~~~~~~~~~l~~L~~l~~~~~-----~~---  231 (482)
                      .+.++..+++.||.|++....  ...+....|++..|+..++      ..|....+++.-.+.|++..-.     ..   
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~  465 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQV  465 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhH
Confidence            136788899999999998652  2233345788888888776      3467788888888888874211     00   


Q ss_pred             -----------------------HHH----------------------HHHhCcHHHHHHhhC-CCChhhHHHHHHHHhH
Q 043116          232 -----------------------IQA----------------------VIEAGVCPRLVKLLG-HRSRLVLTAALRTIGN  265 (482)
Q Consensus       232 -----------------------~~~----------------------~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~  265 (482)
                                             .+.                      ++...++..-..+|. +.++.+.+.++.+|-|
T Consensus       466 ~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQN  545 (717)
T KOG1048|consen  466 LANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQN  545 (717)
T ss_pred             hhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhh
Confidence                                   000                      112223444344443 3466788999999999


Q ss_pred             hhcCChh----hHHHH-HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC----
Q 043116          266 IVTGDDF----QTQCI-INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA----  336 (482)
Q Consensus       266 l~~~~~~----~~~~l-~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~----  336 (482)
                      ++.+...    ....+ .+..+++.|+++|+.+ +..|.+.++.+|.|++.+ .. .+.++..++++.|++.|...    
T Consensus       546 ltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d-~r-nk~ligk~a~~~lv~~Lp~~~~~~  622 (717)
T KOG1048|consen  546 LTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRD-IR-NKELIGKYAIPDLVRCLPGSGPST  622 (717)
T ss_pred             hhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccC-ch-hhhhhhcchHHHHHHhCcCCCCCc
Confidence            9987542    23333 5778999999999999 999999999999999874 22 35666688999999999843    


Q ss_pred             --ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhchh
Q 043116          337 --EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       337 --~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~~  400 (482)
                        +.++...++.+|.+++.. +....+.+.+.+.+++|+-+..+. ++++.+.+...|..+..+.+-
T Consensus       623 ~~sedtv~~vc~tl~niv~~-~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eL  688 (717)
T KOG1048|consen  623 SLSEDTVRAVCHTLNNIVRK-NVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKEL  688 (717)
T ss_pred             CchHHHHHHHHHhHHHHHHH-hHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHH
Confidence              368889999999999975 889999999999999999988764 457888888888888765443

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.81  E-value=8.1e-16  Score=150.51  Aligned_cols=397  Identities=16%  Similarity=0.184  Sum_probs=299.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116           30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVA  109 (482)
Q Consensus        30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  109 (482)
                      +.++.++++.+.+....+..+|..+....  . ...+ ..+..+.|...|.+++ +.+|..+++.++++..++......+
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~-~~~l-~~~~~~~L~~gL~h~~-~~Vr~l~l~~l~~~~~~~~~~~~~~  115 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--S-PDSL-LPQYQPFLQRGLTHPS-PKVRRLALKQLGRIARHSEGAAQLL  115 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--C-HHHH-HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCHHHHHHh
Confidence            33888898777777778888898888764  2 2222 5667889999999999 9999999999999999887778888


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116          110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ  189 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  189 (482)
                      .+.++++.++.++.+++..+...|+.+|.+++...+.. +.+...+.+..|..++ ...+..++..+..++.+++..++.
T Consensus       116 ~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~-~~~~~~vR~Rv~el~v~i~~~S~~  193 (503)
T PF10508_consen  116 VDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLM-SQSSDIVRCRVYELLVEIASHSPE  193 (503)
T ss_pred             cCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHH-hccCHHHHHHHHHHHHHHHhcCHH
Confidence            89999999999999999999999999999999776554 4566777788888888 444666778899999999887643


Q ss_pred             CC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC--h---h-hHHHHHHH
Q 043116          190 PP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS--R---L-VLTAALRT  262 (482)
Q Consensus       190 ~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~---~-v~~~a~~~  262 (482)
                      .. .....|+++.++..+.++|.-++..++.++..++. .+...+.+.+.|+++.|..++.+.+  +   . .....+..
T Consensus       194 ~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f  272 (503)
T PF10508_consen  194 AAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKF  272 (503)
T ss_pred             HHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHH
Confidence            33 23336899999999999999999999999999998 6667888999999999999996532  2   1 22334467


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH-HHc-CC----hHHHHHHHhcC
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV-IDA-GL----IGPIVNLLQDA  336 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l-~~~-~~----i~~L~~ll~~~  336 (482)
                      .++++...+....... ..++..+..++.+. ++..+..|..+++.++.. .+....+ ... +.    +..+.....++
T Consensus       273 ~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~-d~~~~~~A~dtlg~igst-~~G~~~L~~~~~~~~~~~l~~~~~~~~~~  349 (503)
T PF10508_consen  273 FGNLARVSPQEVLELY-PAFLERLFSMLESQ-DPTIREVAFDTLGQIGST-VEGKQLLLQKQGPAMKHVLKAIGDAIKSG  349 (503)
T ss_pred             HHHHHhcChHHHHHHH-HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHhCC-HHHHHHHHhhcchHHHHHHHHHHHHhcCC
Confidence            7778775444332221 24566677777788 999999999999999854 5555555 332 23    44444444567


Q ss_pred             ChhHHHHHHHHHHHhhcCCCH---HHH----H---HHHHcCChH-HHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccC
Q 043116          337 EFGTKKEAAWVISNATSGGTH---EQI----K---HLVREGCVK-PLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTD  405 (482)
Q Consensus       337 ~~~~~~~a~~aL~~l~~~~~~---~~~----~---~l~~~~~l~-~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~  405 (482)
                      ..++|..++.++.++......   +..    .   .....+... .+.++++.|=++++..++..|..++.....     
T Consensus       350 ~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg-----  424 (503)
T PF10508_consen  350 STELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWG-----  424 (503)
T ss_pred             chHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHH-----
Confidence            789999999999999654432   111    1   112234455 788899999999999999999999976433     


Q ss_pred             CCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          406 NIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       406 ~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                             ...+....|.++.+.+-....+.+..+.=-.+++.+.
T Consensus       425 -------~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~  461 (503)
T PF10508_consen  425 -------QREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALA  461 (503)
T ss_pred             -------HHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHH
Confidence                   2445556688888888777778777766666666666

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3e-16  Score=142.08  Aligned_cols=424  Identities=14%  Similarity=0.127  Sum_probs=314.3

Q ss_pred             hchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 043116           18 LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN   97 (482)
Q Consensus        18 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~   97 (482)
                      ..+...+..+.+..|++.|..++.++.......|.+++-.  .++...|.+.|++..|++++..++ ++++...++.+.|
T Consensus       295 ~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf--~eNK~~M~~~~iveKL~klfp~~h-~dL~~~tl~LlfN  371 (791)
T KOG1222|consen  295 SVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIF--DENKIVMEQNGIVEKLLKLFPIQH-PDLRKATLMLLFN  371 (791)
T ss_pred             hHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhh--ccchHHHHhccHHHHHHHhcCCCC-HHHHHHHHHHhhh
Confidence            3445566777899999999988899998999999999987  566888999999999999999999 9999999999999


Q ss_pred             HhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116           98 IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT  177 (482)
Q Consensus        98 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  177 (482)
                      ++- +...|..+++.|.+|.+..++.+..  -...|+..+..++.++ ..+..+.....++.++..+....+.++-....
T Consensus       372 lSF-D~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~li  447 (791)
T KOG1222|consen  372 LSF-DSGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALI  447 (791)
T ss_pred             ccc-cccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHH
Confidence            987 6788999999999999999997643  3345888899998554 46778888889999999887878877777777


Q ss_pred             HHHHHhhcCCCCCChhhhhhHHHHHHHH-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhh
Q 043116          178 WTLSNFCRGKPQPPFNQIRPALRVLAQL-IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLV  255 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~l-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v  255 (482)
                      ....|+|....+.+.......+..|... ++..|+-    ....++|++++.......+++  .+..|...++. .++..
T Consensus       448 a~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F  521 (791)
T KOG1222|consen  448 ALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESF  521 (791)
T ss_pred             HHHHHHHhccccceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHH
Confidence            7778898876555554444556665544 4544442    345677888777655555555  35556666654 55678


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      ...|+++++|+...+-+..+.+.+.+.+|++-..|..+- ..++.-...-.++.++.. ......+..+++++.++++++
T Consensus       522 ~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d-~~cA~Lla~a~~i~tlieLL~  600 (791)
T KOG1222|consen  522 GLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD-LDCARLLAPAKLIDTLIELLQ  600 (791)
T ss_pred             HHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh-hHHHHHhCccccHHHHHHHHH
Confidence            899999999999877777777888899999999887653 334666666666666542 344455568999999999998


Q ss_pred             c--CChhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCccc
Q 043116          335 D--AEFGTKKEAAWVISNATSGGTHEQIKHLVR-EGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVN  411 (482)
Q Consensus       335 ~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~  411 (482)
                      .  .+.+.....+.++..+..+  ...+..++. ...-..+++++++.+.++++.|-.+|.-+........+.       
T Consensus       601 a~QeDDEfV~QiiyVF~Q~l~H--e~tr~~miket~~~AylIDLMHDkN~eiRkVCDn~LdIiae~d~EWAKr-------  671 (791)
T KOG1222|consen  601 ACQEDDEFVVQIIYVFLQFLKH--ELTRRLMIKETALGAYLIDLMHDKNAEIRKVCDNALDIIAEHDKEWAKR-------  671 (791)
T ss_pred             hhcccchHHHHHHHHHHHHHHH--HHHHHHHHhhccchHHHHHHHhcccHHHHHHHHHHHHHHHHhhHHHHHH-------
Confidence            4  5778888889999999885  344455554 456677999999999999999999999988876654432       


Q ss_pred             HHHHHH--HHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCccCCCC
Q 043116          412 QYAQLV--EEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNE  466 (482)
Q Consensus       412 ~~~~~l--~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~  466 (482)
                      .--+.|  ..+++++-.+.-+.++++. +..+..=++ |-.+-+-++.++++++.++
T Consensus       672 I~~EkFrwHNsQWLeMVEs~q~ddsEq-~dY~D~~~e-~~~dld~~~r~d~fdn~d~  726 (791)
T KOG1222|consen  672 IAGEKFRWHNSQWLEMVESQQRDDSEQ-VDYDDEDFE-CDADLDFDHRDDGFDNNDP  726 (791)
T ss_pred             HhhhhcccchhHHHHHHHHhhccchhh-ccccccccc-ccccccccccccccccCcc
Confidence            111222  3446666666656555544 344444444 5555566678888887665

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.79  E-value=5.7e-17  Score=144.74  Aligned_cols=377  Identities=16%  Similarity=0.147  Sum_probs=269.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCC--CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHH
Q 043116           40 DNKVQLEATTLFRKMLSFDR--NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPI  117 (482)
Q Consensus        40 ~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~  117 (482)
                      +..+...+..++...+..+.  +..++.-+..++++.|.+...+++ .++.+++.++|+|+|.++.+.|..+.+.|+-..
T Consensus        55 ~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d-~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi  133 (604)
T KOG4500|consen   55 SDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPD-TEVHEQCFRALGNICYDNNENRAAFFNLGGAQI  133 (604)
T ss_pred             cchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCc-ccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence            44555566677777765421  112333356788899999999997 799999999999999999999999999999888


Q ss_pred             HHHhhCC-------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhhcCCCC
Q 043116          118 FVKLLAS-------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-EHAKLSMLRTATWTLSNFCRGKPQ  189 (482)
Q Consensus       118 L~~ll~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~~~~~~  189 (482)
                      ++++|+.       .+.+....+...|.|..-++.+.+..+.+.|+++++...+- ...+....+.......++.+....
T Consensus       134 vid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e  213 (604)
T KOG4500|consen  134 VIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCE  213 (604)
T ss_pred             hHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHH
Confidence            8887763       23456667788999999999999999999999999888773 223333334433333333322100


Q ss_pred             --CChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CCh-------hhHHH
Q 043116          190 --PPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSR-------LVLTA  258 (482)
Q Consensus       190 --~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~-------~v~~~  258 (482)
                        ........+.-.+++++.+ -++++.+-+...+...++++.-.. .+.+.|.+..+..++.. ++.       ..-..
T Consensus       214 ~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl-~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~  292 (604)
T KOG4500|consen  214 MLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKL-SLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKR  292 (604)
T ss_pred             hhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceee-ehhhcchHHHHHHHHHhcccccchHHHHHHHHh
Confidence              1111123455556666653 367788888888888887655333 46777888888888754 221       12333


Q ss_pred             HHHHHhHhhcCChhhHHHHHhcC-chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---
Q 043116          259 ALRTIGNIVTGDDFQTQCIINCG-ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---  334 (482)
Q Consensus       259 a~~~L~~l~~~~~~~~~~l~~~~-~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---  334 (482)
                      ++..+.-+..+++.. +.+...+ +++.+..++.+. +......+..+++|+++.+. .+.++++.+++..|++++.   
T Consensus       293 ~~el~vllltGDeSM-q~L~~~p~~l~~~~sw~~S~-d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~  369 (604)
T KOG4500|consen  293 IAELDVLLLTGDESM-QKLHADPQFLDFLESWFRSD-DSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEK  369 (604)
T ss_pred             hhhHhhhhhcCchHH-HHHhcCcHHHHHHHHHhcCC-chhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhc
Confidence            444444455555554 4455554 899999999999 99999999999999998654 4678889999999999987   


Q ss_pred             --cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH
Q 043116          335 --DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ  412 (482)
Q Consensus       335 --~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  412 (482)
                        +++.+++..++.||.|+..  +..+...+...|+.+.+...++...|.+..+-+..++-+...-++           .
T Consensus       370 ~vdgnV~~qhA~lsALRnl~I--Pv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~-----------~  436 (604)
T KOG4500|consen  370 DVDGNVERQHACLSALRNLMI--PVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEY-----------I  436 (604)
T ss_pred             CCCccchhHHHHHHHHHhccc--cCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHH-----------H
Confidence              3678899999999999988  556677889999999999999999999998888887766543221           2


Q ss_pred             HHHHHHHhchHHHHHHhhcCCC
Q 043116          413 YAQLVEEAEGLEKIENLQSHDN  434 (482)
Q Consensus       413 ~~~~l~~~~~~~~l~~l~~~~~  434 (482)
                      .++....-..+++|.++..+++
T Consensus       437 a~eL~kn~~l~ekLv~Wsks~D  458 (604)
T KOG4500|consen  437 ACELAKNPELFEKLVDWSKSPD  458 (604)
T ss_pred             HHHHhcCHHHHHHHHHhhhCCc
Confidence            3444444456777777766665

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=2.5e-15  Score=130.18  Aligned_cols=318  Identities=17%  Similarity=0.209  Sum_probs=251.9

Q ss_pred             hcCCHHHHHHhh---cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhC
Q 043116           68 QSGVVPRFVEFL---MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAG  142 (482)
Q Consensus        68 ~~g~~~~L~~ll---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~  142 (482)
                      ..|..+.++.++   .+++ ..+...++.+|..+....|+.    ++..++..++++|.  .++.++....+..+..-|.
T Consensus       102 ~~ga~~~~it~~~la~~~~-~~~l~ksL~al~~lt~~qpdl----~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~  176 (461)
T KOG4199|consen  102 KNGAHDALITLLELAESPN-ESVLKKSLEAINSLTHKQPDL----FDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACI  176 (461)
T ss_pred             cCCCcchhhhHHHHhhCCc-hhHHHHHHHHHHHhhcCCcch----hccccHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence            455666665444   3555 678888999999988766654    56778899999886  4567788888888888888


Q ss_pred             CChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh----------hhhhHHHHHHHHhccC-Ch
Q 043116          143 DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN----------QIRPALRVLAQLIRSN-DE  211 (482)
Q Consensus       143 ~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~----------~~~~~~~~L~~ll~~~-~~  211 (482)
                      ..+..|+.+++.++++.+...+.......+.+.++|++..|...+..+...          ...+++..|.+.++.. +|
T Consensus       177 ~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp  256 (461)
T KOG4199|consen  177 MHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDP  256 (461)
T ss_pred             HhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCc
Confidence            888899999999999999988866666689999999999999876332111          1246677888888743 69


Q ss_pred             hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC-h---hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116          212 KVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS-R---LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL  287 (482)
Q Consensus       212 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~-~---~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~  287 (482)
                      .+...++.+|..++-. ++..+.+.+.|++..+++++.+.+ .   ...+.++..|..++. ++.....+++.|+.+.++
T Consensus       257 ~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG-~DsvKs~IV~~gg~~~ii  334 (461)
T KOG4199|consen  257 DSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAG-SDSVKSTIVEKGGLDKII  334 (461)
T ss_pred             cHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhC-CCchHHHHHHhcChHHHH
Confidence            9999999999999954 456778999999999999998743 2   355778999999886 666778899999999998


Q ss_pred             HHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 043116          288 GLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATSGGTHEQIKHLV  364 (482)
Q Consensus       288 ~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~l~  364 (482)
                      .++ ++..+|.|..+++.+++-++..+|++-..+++.|+-...++.++..  ...+++++++++.|++.. +.++...++
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-s~~~~~~~l  413 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-SAENRTILL  413 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-hhhccchHH
Confidence            776 4454899999999999999998899999999999999999988843  467999999999999986 556666666


Q ss_pred             HcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116          365 REGCVKPLCDLLPCPDPQIVTVCLIGLENI  394 (482)
Q Consensus       365 ~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l  394 (482)
                      ..| ++.|+..-...++.....+-.+|..+
T Consensus       414 ~~G-iE~Li~~A~~~h~tce~~akaALRDL  442 (461)
T KOG4199|consen  414 ANG-IEKLIRTAKANHETCEAAAKAALRDL  442 (461)
T ss_pred             hcc-HHHHHHHHHhcCccHHHHHHHHHHhc
Confidence            655 78888877777776666666666665

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.75  E-value=3.4e-16  Score=157.62  Aligned_cols=330  Identities=17%  Similarity=0.180  Sum_probs=257.2

Q ss_pred             hhhhhccHHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH---HHh-------hcCC------
Q 043116           22 LQSKFEILPTMVAGVWS---DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRF---VEF-------LMRE------   82 (482)
Q Consensus        22 ~~~~~~~i~~l~~~l~s---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L---~~l-------l~~~------   82 (482)
                      ..+..|.+|.|++.+.-   ++.+.+..|-.+|.|+..... +....-.+..+++.|   ..+       ++..      
T Consensus       230 amR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqP-D~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~ap  308 (2195)
T KOG2122|consen  230 AMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQP-DEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAP  308 (2195)
T ss_pred             HHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCc-chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence            46788999999999973   246788889999999998753 322111222223222   222       2111      


Q ss_pred             CChHHHH-HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC------------CCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           83 DYPQLQF-EAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS------------PSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        83 ~~~~v~~-~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~------------~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      ...+=+. .|+.+|-.++- +++.|..+-+.|++.++-+++.-            ....+|..+..+|.||+.++...+.
T Consensus       309 a~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa  387 (2195)
T KOG2122|consen  309 ASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKA  387 (2195)
T ss_pred             cccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchh
Confidence            1012233 67778888876 79999999999999999998752            1356899999999999977655444


Q ss_pred             -HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh--hhHHHHHHHH-hccCChhHHHHHHHHHHHhc
Q 043116          150 -FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI--RPALRVLAQL-IRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       150 -~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~l-l~~~~~~~~~~~l~~L~~l~  225 (482)
                       .+...|++..++..| .....++.+..+.+|.||+.........+.  .|-+-.|..+ ++.........++.+|+||+
T Consensus       388 ~LCs~rgfMeavVAQL-~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLS  466 (2195)
T KOG2122|consen  388 TLCSQRGFMEAVVAQL-ISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLS  466 (2195)
T ss_pred             hhhhhhhHHHHHHHHH-hcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhh
Confidence             456678999999999 555668888999999999998644444433  4556666654 66777889999999999999


Q ss_pred             cCCcHHHHHHHHh-CcHHHHHHhhCCC----ChhhHHHHHHHHhHhhc---CChhhHHHHHhcCchHHHHHHhcCCCchh
Q 043116          226 DGTNDKIQAVIEA-GVCPRLVKLLGHR----SRLVLTAALRTIGNIVT---GDDFQTQCIINCGALRYLLGLLIHNHNKS  297 (482)
Q Consensus       226 ~~~~~~~~~~~~~-~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  297 (482)
                      .+..++...++.- |.+..|+.+|+..    .-.+.+.+-++|.|.+.   ..+.+.+.+.+++.+..|++.|++. +..
T Consensus       467 AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-SLT  545 (2195)
T KOG2122|consen  467 AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-SLT  545 (2195)
T ss_pred             hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-ceE
Confidence            8888777777776 8999999999875    34588888888888764   3667788889999999999999999 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      +...+|++|+||+..+++..+.+++.|.++.|..++.+.+..+..-++.+|.|+..+.
T Consensus       546 iVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  546 IVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             EeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999999999999999998764

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.74  E-value=4.8e-15  Score=128.49  Aligned_cols=324  Identities=12%  Similarity=0.129  Sum_probs=256.8

Q ss_pred             hhhhccHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHH
Q 043116           23 QSKFEILPTMVAGV---WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-DYPQLQFEAARALTNI   98 (482)
Q Consensus        23 ~~~~~~i~~l~~~l---~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l   98 (482)
                      .-..+..+.++-.+   .+++..+-..++.+|..+.... +    .+.+..+...++.+|... ++.++....+.++..-
T Consensus       100 a~~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q-p----dl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~A  174 (461)
T KOG4199|consen  100 AGKNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ-P----DLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKA  174 (461)
T ss_pred             hccCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC-c----chhccccHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            33444555554443   3677888888999998887664 2    256777888999988643 2268888888999998


Q ss_pred             hCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCCh---------hhHHHHHHhCChHHHHHHHcchh
Q 043116           99 ASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSS---------RCRDFVLSQGALIPLLAELNEHA  168 (482)
Q Consensus        99 ~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~---------~~~~~~~~~~~i~~l~~~l~~~~  168 (482)
                      |..++.+|+.+++.++++.+...+.. +...+.+.+.|++.-+..++.         ...+.+...|++..|+..+....
T Consensus       175 c~~hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~  254 (461)
T KOG4199|consen  175 CIMHEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI  254 (461)
T ss_pred             HHHhHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC
Confidence            88899999999999999999976653 444577778999998875442         34567788888999999997777


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC-Chh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043116          169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN-DEK---VLTDACRALAYLADGTNDKIQAVIEAGVCPRL  244 (482)
Q Consensus       169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~---~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L  244 (482)
                      ++.+...++.+|..|+-.++........|++..++.++.+. +..   ....++..|+.++-. +.....+++.|+.+.+
T Consensus       255 dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~-DsvKs~IV~~gg~~~i  333 (461)
T KOG4199|consen  255 DPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGS-DSVKSTIVEKGGLDKI  333 (461)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCC-CchHHHHHHhcChHHH
Confidence            89999999999999998766666666689999999999874 333   446678888888844 4466779999999999


Q ss_pred             HHhh--CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116          245 VKLL--GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAGNREQIQAVI  321 (482)
Q Consensus       245 ~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~  321 (482)
                      +.++  .+++|.+...++.++.-++-..+++...+++.|+-...++.++.. ....+++.|||.+.|++..+.++...++
T Consensus       334 i~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l  413 (461)
T KOG4199|consen  334 ITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL  413 (461)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH
Confidence            9887  346788999999999999998999999999999999988888754 3567999999999999998778777776


Q ss_pred             HcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          322 DAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       322 ~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      . .+++.|+..-...++.....+-.+|..+-.
T Consensus       414 ~-~GiE~Li~~A~~~h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  414 A-NGIEKLIRTAKANHETCEAAAKAALRDLGC  444 (461)
T ss_pred             h-ccHHHHHHHHHhcCccHHHHHHHHHHhcCc
Confidence            6 567888888888888888888888888754

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.74  E-value=7e-15  Score=131.55  Aligned_cols=403  Identities=13%  Similarity=0.057  Sum_probs=286.7

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC------CChHHHHHHHHHHHHHh
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE------DYPQLQFEAARALTNIA   99 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~------~~~~v~~~a~~~L~~l~   99 (482)
                      .+.++.|.+..+|++.++.....++|.|++..+ ++.+..+.+.|+-..+++.|+.-      .+.+...-+...|.|..
T Consensus        86 a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   86 AEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            345666777777888999999999999999877 78899999999988888877632      22456677788999999


Q ss_pred             CCChHhHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116          100 SGTSENTKVAIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTA  176 (482)
Q Consensus       100 ~~~~~~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  176 (482)
                      -++.+.+..+.+.|+++.|...+.  -.+....+.+...+.|+..-. +.......+......+++++.....++....+
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~  244 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMI  244 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhhHH
Confidence            999999999999999999988765  466777777777777665322 22334555666777888888777778888888


Q ss_pred             HHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-CChhH-------HHHHHHHHHHhccCCcHHHHHHHHhC-cHHHHHHh
Q 043116          177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-NDEKV-------LTDACRALAYLADGTNDKIQAVIEAG-VCPRLVKL  247 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~-------~~~~l~~L~~l~~~~~~~~~~~~~~~-~l~~L~~l  247 (482)
                      ..++...+.++...-.....|.+..+..+++. ++..-       ...++....-+..++ +..+.+...+ +++.+.++
T Consensus       245 feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGD-eSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  245 FEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGD-ESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCc-hHHHHHhcCcHHHHHHHHH
Confidence            88999888876544444556888888888875 22222       222333333334444 4555666665 89999999


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHc
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN----HNKSIKKEVCWIISNITAGNREQIQAVIDA  323 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~  323 (482)
                      +.+.+......+.-+|+|+++ .+.....+++.+++..|+..+...    .+.+++..++.+|.|++-..+. ...+...
T Consensus       324 ~~S~d~~l~t~g~LaigNfaR-~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~n-ka~~~~a  401 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNFAR-RDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSN-KAHFAPA  401 (604)
T ss_pred             hcCCchhHHHHHHHHHHhhhc-cchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCc-hhhcccc
Confidence            999999999999999999999 555567788999999999988651    1667888999999999874333 5678899


Q ss_pred             CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHHHhcCCCCCHH-HHHHHHHHHHHHHHhchhc
Q 043116          324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR-EGCVKPLCDLLPCPDPQ-IVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       324 ~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L~~ll~~~~~~-v~~~~l~~L~~l~~~~~~~  401 (482)
                      |+.+.++..++...|.+...-...+.-+... .+.....+.+ ...++.|++--+++|.. +.-.....+..+++..-..
T Consensus       402 GvteaIL~~lk~~~ppv~fkllgTlrM~~d~-qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~k  480 (604)
T KOG4500|consen  402 GVTEAILLQLKLASPPVTFKLLGTLRMIRDS-QEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYK  480 (604)
T ss_pred             chHHHHHHHHHhcCCcchHHHHHHHHHHHhc-hHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhh
Confidence            9999999999999899988888888766542 2222222232 24567777777777664 5555555666666543221


Q ss_pred             cccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 043116          402 KNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK  443 (482)
Q Consensus       402 ~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~  443 (482)
                      .          ....+-++||++.........+-..+..|.-
T Consensus       481 d----------v~~tvpksg~ik~~Vsm~t~~hi~mqnEalV  512 (604)
T KOG4500|consen  481 D----------VILTVPKSGGIKEKVSMFTKNHINMQNEALV  512 (604)
T ss_pred             h----------hHhhccccccHHHHHHHHHHhhHHHhHHHHH
Confidence            1          2333456666666666655555554444433

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.73  E-value=3.9e-14  Score=141.82  Aligned_cols=394  Identities=16%  Similarity=0.141  Sum_probs=275.8

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh--
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS--  103 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~--  103 (482)
                      .+.++.|++..+|+++..|..|+.+|..+...-++.....  -..+.+.|.+.+.+++. .+|..|+++++.++...+  
T Consensus       117 Pell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~--~~~l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~~~~~~  193 (1075)
T KOG2171|consen  117 PELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPH--LDDLLRLFSQTMTDPSS-PVRVAAVRALGAFAEYLENN  193 (1075)
T ss_pred             HHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchh--HHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHhccc
Confidence            4568889999999999999999999999887642222111  11256667777778884 499999999999887553  


Q ss_pred             -HhHHHHHhCCChHHHHH----hhCCCCHHHHHHHHHHHHHhhCCChhh-HHHHHHhCChHHHHHHHcc-hhhhhHHHHH
Q 043116          104 -ENTKVAIDHGAVPIFVK----LLASPSDDVREQAVWALGNVAGDSSRC-RDFVLSQGALIPLLAELNE-HAKLSMLRTA  176 (482)
Q Consensus       104 -~~~~~~~~~g~i~~L~~----ll~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a  176 (482)
                       ..++.+.  ..+|.++.    .+..++......++.+|..+....+.+ +..+.+  ++...+.+..+ .-++.++..|
T Consensus       194 ~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~--ii~~~l~Ia~n~~l~~~~R~~A  269 (1075)
T KOG2171|consen  194 KSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQ--IIQFSLEIAKNKELENSIRHLA  269 (1075)
T ss_pred             hHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHH--HHHHHHHHhhcccccHHHHHHH
Confidence             3333333  24555544    455677777778899999998665553 333322  45555555533 3467888999


Q ss_pred             HHHHHHhhcCCCCCCh---hhhhhHHHHHHHHhccC--C--------------hhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116          177 TWTLSNFCRGKPQPPF---NQIRPALRVLAQLIRSN--D--------------EKVLTDACRALAYLADGTNDKIQAVIE  237 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~~---~~~~~~~~~L~~ll~~~--~--------------~~~~~~~l~~L~~l~~~~~~~~~~~~~  237 (482)
                      +.++..++...|....   .....+++.++.++...  |              ...-..+.++|-.++.+-+..   .+-
T Consensus       270 Le~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~---~v~  346 (1075)
T KOG2171|consen  270 LEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK---QVL  346 (1075)
T ss_pred             HHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh---heh
Confidence            9999999988533222   23456777777766421  1              124455777777777654322   112


Q ss_pred             hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH
Q 043116          238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI  317 (482)
Q Consensus       238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~  317 (482)
                      .-+++.+-.++.++++.-|..++.+|+.++.+..+.....++ .+++.++..++++ ++.||..|+.+++.++.+-...+
T Consensus       347 p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~Dp-hprVr~AA~naigQ~stdl~p~i  424 (1075)
T KOG2171|consen  347 PPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDP-HPRVRYAALNAIGQMSTDLQPEI  424 (1075)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCC-CHHHHHHHHHHHHhhhhhhcHHH
Confidence            235677778889999999999999999999988877665443 5888999999999 99999999999999998655556


Q ss_pred             HHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH-HHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          318 QAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK-PLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       318 ~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~-~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +.....-+.+.|+..+++ +++.++..|+.++-|++..+.++......+ ++++ .+..++.++.+.+++.++.+|..+.
T Consensus       425 qk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  425 QKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence            776766788899998886 578999999999999998877766554333 3555 5555677888899999999999998


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC-HHHHHHHHHHH
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN-NDIHEMSVKIL  445 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l  445 (482)
                      ...+..        ..+|...+     |+.|.+.+.+.+ ++.+....+.+
T Consensus       504 ~AA~~~--------F~pY~d~~-----Mp~L~~~L~n~~~~d~r~Lrgktm  541 (1075)
T KOG2171|consen  504 DAAQEK--------FIPYFDRL-----MPLLKNFLQNADDKDLRELRGKTM  541 (1075)
T ss_pred             HHHhhh--------hHhHHHHH-----HHHHHHHHhCCCchhhHHHHhhHH
Confidence            765542        33444444     677777755444 44444444433

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=2.8e-14  Score=129.48  Aligned_cols=380  Identities=17%  Similarity=0.149  Sum_probs=287.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116           40 DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV  119 (482)
Q Consensus        40 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  119 (482)
                      ...+..-|+..|.|++..  ...-..|....++..|++.|..++ .++.......|..++- -.+++..+.+.|++..|+
T Consensus       276 QeqLLrva~ylLlNlAed--~~~ElKMrrkniV~mLVKaLdr~n-~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~  351 (791)
T KOG1222|consen  276 QEQLLRVAVYLLLNLAED--ISVELKMRRKNIVAMLVKALDRSN-SSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLL  351 (791)
T ss_pred             HHHHHHHHHHHHHHHhhh--hhHHHHHHHHhHHHHHHHHHcccc-hHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHH
Confidence            355566788999999976  344566778899999999999999 7999999999999987 678888999999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHH
Q 043116          120 KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPAL  199 (482)
Q Consensus       120 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~  199 (482)
                      +++....++++...+..+.|++.+. ..+..++..|.+|.+..++.++..   ...|+..+..++.++..........++
T Consensus       352 klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD~~K~MfayTdci  427 (791)
T KOG1222|consen  352 KLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDDDAKAMFAYTDCI  427 (791)
T ss_pred             HhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCcHHHHHHHHHHHH
Confidence            9999999999999999999999654 467888899999999999944332   334777788888876555555667889


Q ss_pred             HHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          200 RVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       200 ~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      +.+...+- ..+.++-...+..-.|++.+.. ..+.+++...+..|+..- +..++-    ....+.|++.+.......+
T Consensus       428 ~~lmk~v~~~~~~~vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~l----LmK~vRniSqHeg~tqn~F  502 (791)
T KOG1222|consen  428 KLLMKDVLSGTGSEVDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDLL----LMKVVRNISQHEGATQNMF  502 (791)
T ss_pred             HHHHHHHHhcCCceecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccchH----HHHHHHHhhhccchHHHHH
Confidence            88887654 4455555555554456774433 455677776777777653 444532    3456778887666555555


Q ss_pred             HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCC
Q 043116          278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~  355 (482)
                      ++  .+..|..++....+...-.++.++++|+.-.+-+..+.+-+...+|-+-..+..  ...++....+.+++.++.  
T Consensus       503 id--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~--  578 (791)
T KOG1222|consen  503 ID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR--  578 (791)
T ss_pred             HH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh--
Confidence            54  566777777776577788899999999987555544455568899999998884  345678888888998887  


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCC--CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC
Q 043116          356 THEQIKHLVREGCVKPLCDLLPC--PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD  433 (482)
Q Consensus       356 ~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~  433 (482)
                      +...+..+...++++.++++++.  .+.+.+...+..+..+++..-.            ..-++++...-..+.+|+++.
T Consensus       579 d~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~t------------r~~miket~~~AylIDLMHDk  646 (791)
T KOG1222|consen  579 DLDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELT------------RRLMIKETALGAYLIDLMHDK  646 (791)
T ss_pred             hhHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHH------------HHHHHhhccchHHHHHHHhcc
Confidence            55667777788999999999974  5557777777777777766333            245677888888999999999


Q ss_pred             CHHHHHHHHHHHHHh
Q 043116          434 NNDIHEMSVKILETY  448 (482)
Q Consensus       434 ~~~v~~~a~~~l~~~  448 (482)
                      |.++++.+...+.-+
T Consensus       647 N~eiRkVCDn~LdIi  661 (791)
T KOG1222|consen  647 NAEIRKVCDNALDII  661 (791)
T ss_pred             cHHHHHHHHHHHHHH
Confidence            999998777666543

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=5.1e-14  Score=141.02  Aligned_cols=400  Identities=16%  Similarity=0.181  Sum_probs=278.3

Q ss_pred             hhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           24 SKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        24 ~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      .....++.|...++ +.+|+++..|+-.+++++... ......-....+-..++..+.++..+.+|..-+.+++.+++..
T Consensus        33 ~~~~~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~-w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~  111 (1075)
T KOG2171|consen   33 KTEPLLPALAHILATSADPQVRQLAAVLLRKLLTKH-WSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARND  111 (1075)
T ss_pred             cccchHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhc
Confidence            34447888888887 778999999999999999864 3333333444455666776666655899999999999998833


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS  181 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  181 (482)
                      -..    -.-++++.|.+..+++++..|+.|+.+|+.+...-.. .+..+.+  +.+.+.+.+ .+.+..++..++.++.
T Consensus       112 l~e----~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~-~d~s~~vr~~a~rA~~  184 (1075)
T KOG2171|consen  112 LPE----KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTM-TDPSSPVRVAAVRALG  184 (1075)
T ss_pred             ccc----chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhc-cCCcchHHHHHHHHHH
Confidence            221    2235788899999999999999999999999743322 1111111  233444445 3444448888999998


Q ss_pred             HhhcCCC--CCChhhhhhHHHHHHHHh----ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--Ch
Q 043116          182 NFCRGKP--QPPFNQIRPALRVLAQLI----RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SR  253 (482)
Q Consensus       182 ~L~~~~~--~~~~~~~~~~~~~L~~ll----~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~  253 (482)
                      .++...+  ..........+|.++..+    ..+|......++.+|..++...+......+. .++...+.+..+.  ++
T Consensus       185 a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~-~ii~~~l~Ia~n~~l~~  263 (1075)
T KOG2171|consen  185 AFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLS-QIIQFSLEIAKNKELEN  263 (1075)
T ss_pred             HHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHH-HHHHHHHHHhhcccccH
Confidence            8887653  223334456666655544    4567777888888888888766654443322 3444444444443  45


Q ss_pred             hhHHHHHHHHhHhhcCChhhHHH---------------------------------------------HH-----hcC--
Q 043116          254 LVLTAALRTIGNIVTGDDFQTQC---------------------------------------------II-----NCG--  281 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~~~~---------------------------------------------l~-----~~~--  281 (482)
                      .+|..|+.+|..++..-+...+.                                             .+     .-|  
T Consensus       264 ~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~  343 (1075)
T KOG2171|consen  264 SIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK  343 (1075)
T ss_pred             HHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChh
Confidence            67777777766665442211100                                             00     001  


Q ss_pred             -----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCC
Q 043116          282 -----ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGT  356 (482)
Q Consensus       282 -----~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~  356 (482)
                           +++.+-.++.+. +..-|+.+..+|+.++.|+.+.+...++ .+++.++..+.++++.||..|+.|++.++..-.
T Consensus       344 ~v~p~~~~~l~~~l~S~-~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~  421 (1075)
T KOG2171|consen  344 QVLPPLFEALEAMLQST-EWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQ  421 (1075)
T ss_pred             hehHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhc
Confidence                 245566677788 8899999999999999999888877665 589999999999999999999999999998766


Q ss_pred             HHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH-HHHHhhcCCC
Q 043116          357 HEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE-KIENLQSHDN  434 (482)
Q Consensus       357 ~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~l~~l~~~~~  434 (482)
                      ++..++ ..+.+++.|+..+++ .++++..++..++.++++.+.+..       ..+|...+     ++ .+..|..++.
T Consensus       422 p~iqk~-~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~-------l~pYLd~l-----m~~~l~~L~~~~~  488 (1075)
T KOG2171|consen  422 PEIQKK-HHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSI-------LEPYLDGL-----MEKKLLLLLQSSK  488 (1075)
T ss_pred             HHHHHH-HHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHH-------HHHHHHHH-----HHHHHHHHhcCCc
Confidence            665554 556778788888876 556899999999999999877743       34455555     44 6777778888


Q ss_pred             HHHHHHHHHHHHH
Q 043116          435 NDIHEMSVKILET  447 (482)
Q Consensus       435 ~~v~~~a~~~l~~  447 (482)
                      +.+++.+...|-.
T Consensus       489 ~~v~e~vvtaIas  501 (1075)
T KOG2171|consen  489 PYVQEQAVTAIAS  501 (1075)
T ss_pred             hhHHHHHHHHHHH
Confidence            8888888776643

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.71  E-value=6e-15  Score=148.92  Aligned_cols=361  Identities=19%  Similarity=0.206  Sum_probs=274.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC--ChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED--YPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~--~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      .+..++...|+.   .-.+.|..++..  .+....+...|.++.|++++.-++  ..+.+..|-.+|.||....++....
T Consensus       201 sllsml~t~D~e---e~ar~fLemSss--~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~  275 (2195)
T KOG2122|consen  201 SLLSMLGTDDEE---EMARTFLEMSSS--PESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG  275 (2195)
T ss_pred             HHhhhcccCCHH---HHHHHHHHhccC--chhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence            555666655554   335666667665  455777889999999999997554  2578899999999999877665433


Q ss_pred             HHhCCChHHH----------HHhhCCC-----C--HHHH-HHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc----
Q 043116          109 AIDHGAVPIF----------VKLLASP-----S--DDVR-EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE----  166 (482)
Q Consensus       109 ~~~~g~i~~L----------~~ll~~~-----~--~~~~-~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----  166 (482)
                      -.+..++..|          ...+...     +  .+-+ ..|+.+|..++ .++++|..+-+.|++..+-.++.-    
T Consensus       276 RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~S-FDEEhR~aM~ELG~LqAIaeLl~vDh~m  354 (2195)
T KOG2122|consen  276 RREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLS-FDEEHRHAMNELGGLQAIAELLQVDHEM  354 (2195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhh-ccHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            3322222222          2222221     1  1222 26777777877 557889999999999998887732    


Q ss_pred             -------hhhhhHHHHHHHHHHHhhcCCCCCChh--hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHH-HHHHH
Q 043116          167 -------HAKLSMLRTATWTLSNFCRGKPQPPFN--QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK-IQAVI  236 (482)
Q Consensus       167 -------~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~  236 (482)
                             .....+++++..+|.||+..+......  -..|++..++..|.+...++.......|+||+=..+.. ...+-
T Consensus       355 hgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLr  434 (2195)
T KOG2122|consen  355 HGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLR  434 (2195)
T ss_pred             cCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHH
Confidence                   123478999999999999987433332  33799999999999988899999999999999443333 34455


Q ss_pred             HhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCCC---chhHHHHHHHHHHHHhc
Q 043116          237 EAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHNH---NKSIKKEVCWIISNITA  311 (482)
Q Consensus       237 ~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~  311 (482)
                      +.|-+..|+.+ |....+...+..+.+|+||+.+.-+....+.. .|.+..|+.+|.+..   .-.+...|.++|.|++.
T Consensus       435 E~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS  514 (2195)
T KOG2122|consen  435 ETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSS  514 (2195)
T ss_pred             hhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHh
Confidence            55877777776 45566678889999999999987766665654 488999999998752   34567788899999886


Q ss_pred             ---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHH
Q 043116          312 ---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL  388 (482)
Q Consensus       312 ---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l  388 (482)
                         .+..+++.+.+.+++..|++.|++.+..+..++|.+|.||... +++..++|.+.|++..|..++++.+..+.+-..
T Consensus       515 ~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR-~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSa  593 (2195)
T KOG2122|consen  515 LIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-SPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSA  593 (2195)
T ss_pred             HhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcC-CHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHH
Confidence               4677778888999999999999999999999999999999986 778889999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 043116          389 IGLENILKVG  398 (482)
Q Consensus       389 ~~L~~l~~~~  398 (482)
                      .+|.|++.+.
T Consensus       594 aALrNLln~R  603 (2195)
T KOG2122|consen  594 AALRNLLNFR  603 (2195)
T ss_pred             HHHHHHhcCC
Confidence            9999999764

>PRK09687 putative lyase; Provisional

Probab=99.67  E-value=2.2e-14  Score=128.93  Aligned_cols=255  Identities=13%  Similarity=0.092  Sum_probs=201.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      -++.|..+|.+++ ..+|..|++.|..+..           ..+++.+..++.++++.+|..++++|+.+-.....    
T Consensus        24 ~~~~L~~~L~d~d-~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~----   87 (280)
T PRK09687         24 NDDELFRLLDDHN-SLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC----   87 (280)
T ss_pred             cHHHHHHHHhCCC-HHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc----
Confidence            4788999999999 8999999999998853           24567888899999999999999999999532211    


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTND  230 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~  230 (482)
                        ....++.|..++.+++++.++..++.+|.+++......    ...+++.+...+.++++.++..++++|+.+..  + 
T Consensus        88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--~-  158 (280)
T PRK09687         88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFALSVIND--E-  158 (280)
T ss_pred             --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--H-
Confidence              11246667777658888999999999999997554212    23466667788888999999999999987652  1 


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116          231 KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT  310 (482)
Q Consensus       231 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~  310 (482)
                              ..++.|+.++.++++.++..|+.+|+.+...++         ..++.|+..+.+. +..||..|+++|+.+-
T Consensus       159 --------~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~-~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        159 --------AAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK-NEEIRIEAIIGLALRK  220 (280)
T ss_pred             --------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC-ChHHHHHHHHHHHccC
Confidence                    246899999999999999999999999943333         2566789999888 9999999999999863


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHH
Q 043116          311 AGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLI  389 (482)
Q Consensus       311 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~  389 (482)
                        ++         ..++.|++.+.+++  ++..++.+|+++-.   +.         .++.|..+++ ++|+.++..+.+
T Consensus       221 --~~---------~av~~Li~~L~~~~--~~~~a~~ALg~ig~---~~---------a~p~L~~l~~~~~d~~v~~~a~~  275 (280)
T PRK09687        221 --DK---------RVLSVLIKELKKGT--VGDLIIEAAGELGD---KT---------LLPVLDTLLYKFDDNEIITKAID  275 (280)
T ss_pred             --Ch---------hHHHHHHHHHcCCc--hHHHHHHHHHhcCC---Hh---------HHHHHHHHHhhCCChhHHHHHHH
Confidence              33         37888899988765  67788889888864   32         6888888886 789999999988


Q ss_pred             HHHH
Q 043116          390 GLEN  393 (482)
Q Consensus       390 ~L~~  393 (482)
                      +|..
T Consensus       276 a~~~  279 (280)
T PRK09687        276 KLKR  279 (280)
T ss_pred             HHhc
Confidence            8764

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.65  E-value=3.5e-13  Score=127.17  Aligned_cols=404  Identities=14%  Similarity=0.074  Sum_probs=272.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHHHHHh
Q 043116           33 VAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTKVAID  111 (482)
Q Consensus        33 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~  111 (482)
                      +..+...+|+....|..-..+++.+. .++....+..|.++.+..+++..+ .++.+.+.+.++...+....+....+.+
T Consensus        15 l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~   93 (678)
T KOG1293|consen   15 LYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLR   93 (678)
T ss_pred             HHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHH
Confidence            33444667888888999999999886 555567899999999999988665 2567777888888888888888899999


Q ss_pred             CCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          112 HGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       112 ~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                      .+.++.|..++.+.+ ..+++.+++++.++...++..  ........+++.+..++ ..+.......-+....+++....
T Consensus        94 ~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~-s~~lk~~~~l~~~~~a~~s~~~~  172 (678)
T KOG1293|consen   94 IIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLY-SIELKYISRLDVSRAAHLSSTKD  172 (678)
T ss_pred             HhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHH-hhhhhhhhhhhhhhhccccccch
Confidence            999999999999988 889999999999998655321  11122222344444444 32333344445555555555543


Q ss_pred             CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHH---HhccCCcHHHH----HHHHhCcHH--HHHHhhCCCChhhHHHH
Q 043116          189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALA---YLADGTNDKIQ----AVIEAGVCP--RLVKLLGHRSRLVLTAA  259 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~---~l~~~~~~~~~----~~~~~~~l~--~L~~ll~~~~~~v~~~a  259 (482)
                      ........++.+.+.-++.......+..++.+++   ++..+++....    .+.+.|+.+  .+.+++++++.+.+..+
T Consensus       173 hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~s  252 (678)
T KOG1293|consen  173 HQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRS  252 (678)
T ss_pred             hhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHH
Confidence            3333344677777777777778889999999999   77766654333    233446655  45566677777766777


Q ss_pred             HHHHhHhhcCChh------------h-----H----------------------------------HHHHhcCchHHHHH
Q 043116          260 LRTIGNIVTGDDF------------Q-----T----------------------------------QCIINCGALRYLLG  288 (482)
Q Consensus       260 ~~~L~~l~~~~~~------------~-----~----------------------------------~~l~~~~~i~~L~~  288 (482)
                      +.++-++...+..            .     .                                  ....+....+...+
T Consensus       253 l~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~e  332 (678)
T KOG1293|consen  253 LECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTE  332 (678)
T ss_pred             HHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHH
Confidence            7777666554300            0     0                                  00000011111111


Q ss_pred             Hh----------------------------------------------------cCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116          289 LL----------------------------------------------------IHNHNKSIKKEVCWIISNITAGNREQ  316 (482)
Q Consensus       289 ll----------------------------------------------------~~~~~~~v~~~a~~~L~nl~~~~~~~  316 (482)
                      ++                                                    ... +..+...|+-++-+++..-...
T Consensus       333 llf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~k-d~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  333 LLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIK-DHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccc-cHHHHHHHHHHHHHHHHHHHHH
Confidence            11                                                    011 3334444444444444321121


Q ss_pred             HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          317 IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       317 ~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                      ...+-..+++.+|++++..++..++..+..+|+|++..-+ .....++..|+++.+.+++.+.++.++..++|+|.+++-
T Consensus       412 ~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f  490 (678)
T KOG1293|consen  412 RTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMF  490 (678)
T ss_pred             HcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            2223346689999999999999999999999999986433 335677899999999999999999999999999999986


Q ss_pred             hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      .++...+           ..+-.-=+...|..+.++++..|++.+..++.++..+
T Consensus       491 ~~de~~k-----------~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  491 NCDEEEK-----------FQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             cchHHHH-----------HHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            6555322           2211222367788999999999999999999998877

>PRK09687 putative lyase; Provisional

Probab=99.65  E-value=5.9e-14  Score=126.13  Aligned_cols=255  Identities=13%  Similarity=0.075  Sum_probs=200.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      -.++.|++.|.+++..++..+++.|..+-..            ..++.+..++++++ +.+|..|+++|+.+.... .. 
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~------------~~~~~l~~ll~~~d-~~vR~~A~~aLg~lg~~~-~~-   87 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQ------------DVFRLAIELCSSKN-PIERDIGADILSQLGMAK-RC-   87 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcc------------hHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCc-cc-
Confidence            3689999999999999999999999877533            25778889999998 999999999999996421 11 


Q ss_pred             HHHHhCCChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          107 KVAIDHGAVPIFVKL-LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       107 ~~~~~~g~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                          ....++.|..+ ++++++.+|..|+.+|++++......     ....+..+...+ .+.+..++..++++|..+..
T Consensus        88 ----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~-~D~~~~VR~~a~~aLg~~~~  157 (280)
T PRK09687         88 ----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITA-FDKSTNVRFAVAFALSVIND  157 (280)
T ss_pred             ----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHh-hCCCHHHHHHHHHHHhccCC
Confidence                11356777776 67889999999999999997433211     011244455555 56688999999999975532


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                                ...++.|+.++.++++.++..++.+|+.+...++         ..++.|+..+.+.++.|+..|++.|+.
T Consensus       158 ----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~~~~VR~~A~~aLg~  218 (280)
T PRK09687        158 ----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDKNEEIRIEAIIGLAL  218 (280)
T ss_pred             ----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCCChHHHHHHHHHHHc
Confidence                      4588999999999999999999999999843333         245789999999999999999999998


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHH
Q 043116          266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEA  344 (482)
Q Consensus       266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a  344 (482)
                      +-.  +         ..++.|++.++++ +  ++..++.+|+++..  +.         .+|.|..++. .+|..++..+
T Consensus       219 ~~~--~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~--~~---------a~p~L~~l~~~~~d~~v~~~a  273 (280)
T PRK09687        219 RKD--K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD--KT---------LLPVLDTLLYKFDDNEIITKA  273 (280)
T ss_pred             cCC--h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC--Hh---------HHHHHHHHHhhCCChhHHHHH
Confidence            642  2         3688999999987 4  67889999998853  33         7888889987 7899999999


Q ss_pred             HHHHHH
Q 043116          345 AWVISN  350 (482)
Q Consensus       345 ~~aL~~  350 (482)
                      .++|..
T Consensus       274 ~~a~~~  279 (280)
T PRK09687        274 IDKLKR  279 (280)
T ss_pred             HHHHhc
Confidence            998863

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=1.4e-13  Score=129.62  Aligned_cols=318  Identities=16%  Similarity=0.187  Sum_probs=215.4

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhC----CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043116           69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH----GAVPIFVKLLASPSDDVREQAVWALGNVAGDS  144 (482)
Q Consensus        69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~----g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  144 (482)
                      ..++|.|.++|.+++ ....+-|..+|..++.++++.-+.-...    -.+|.++.+.+++++.+|..|+.++..+.-..
T Consensus       127 pelLp~L~~~L~s~d-~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~  205 (885)
T KOG2023|consen  127 PELLPQLCELLDSPD-YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQ  205 (885)
T ss_pred             hhHHHHHHHHhcCCc-ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecC
Confidence            347899999999999 6899999999999999887765442222    25788999999999999999999999987444


Q ss_pred             hhhHHHHHH-hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116          145 SRCRDFVLS-QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY  223 (482)
Q Consensus       145 ~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~  223 (482)
                      +..  .... ..++..+..+- .+.+++++.+.|.++..|..-.+..-.....++++++++..++.|.++...|+.....
T Consensus       206 ~qa--l~~~iD~Fle~lFala-nD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla  282 (885)
T KOG2023|consen  206 TQA--LYVHIDKFLEILFALA-NDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLA  282 (885)
T ss_pred             cHH--HHHHHHHHHHHHHHHc-cCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            322  1111 12455555555 7889999999999999999887777777778899999888888888888888777666


Q ss_pred             hccCCcHHHHH---------------------------------------------------------------------
Q 043116          224 LADGTNDKIQA---------------------------------------------------------------------  234 (482)
Q Consensus       224 l~~~~~~~~~~---------------------------------------------------------------------  234 (482)
                      +++.+. ....                                                                     
T Consensus       283 ~aeqpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~D  361 (885)
T KOG2023|consen  283 LAEQPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDD  361 (885)
T ss_pred             HhcCcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccc
Confidence            664321 0000                                                                     


Q ss_pred             -----------------------HHHhCcHHHHHHh----hCCCChhhHHHHHHHHhHhhcCChh-hHHHHHhcCchHHH
Q 043116          235 -----------------------VIEAGVCPRLVKL----LGHRSRLVLTAALRTIGNIVTGDDF-QTQCIINCGALRYL  286 (482)
Q Consensus       235 -----------------------~~~~~~l~~L~~l----l~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L  286 (482)
                                             ++...+++.++++    |.++++.+++.+..++|.++.+.-. ....+  ..++|.+
T Consensus       362 DdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~L--peLip~l  439 (885)
T KOG2023|consen  362 DDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHL--PELIPFL  439 (885)
T ss_pred             cccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccch--HHHHHHH
Confidence                                   1112233333333    3455666777777777777754321 11111  1368899


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHH
Q 043116          287 LGLLIHNHNKSIKKEVCWIISNITA--GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV  364 (482)
Q Consensus       287 ~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~  364 (482)
                      +.+|.+. .+-||.-.||+|+..+.  ...+ .+.++. .++..++..+-+++..|++.|+.|+..+-..+..+...++.
T Consensus       440 ~~~L~DK-kplVRsITCWTLsRys~wv~~~~-~~~~f~-pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~  516 (885)
T KOG2023|consen  440 LSLLDDK-KPLVRSITCWTLSRYSKWVVQDS-RDEYFK-PVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLE  516 (885)
T ss_pred             HHHhccC-ccceeeeeeeeHhhhhhhHhcCC-hHhhhH-HHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHH
Confidence            9999999 99999999999999976  1111 222222 25555666666889999999999999998877666655543


Q ss_pred             HcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          365 REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       365 ~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .  ++..|+..++....+-.....++++++....
T Consensus       517 ~--IL~~l~~af~kYQ~KNLlILYDAIgtlAdsv  548 (885)
T KOG2023|consen  517 Y--ILDQLVFAFGKYQKKNLLILYDAIGTLADSV  548 (885)
T ss_pred             H--HHHHHHHHHHHHhhcceehHHHHHHHHHHHH
Confidence            3  4555555554333332223345555555443

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.63  E-value=3.3e-13  Score=127.42  Aligned_cols=374  Identities=14%  Similarity=0.125  Sum_probs=250.1

Q ss_pred             hhhhccHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           23 QSKFEILPTMVAGVWSDD--NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      .-+.|+++.+..++..++  +..+...+..+..+..++ ......+.+.+.++.+++++..++...++...++++..+..
T Consensus        47 ~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~e-qd~v~svL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ife  125 (678)
T KOG1293|consen   47 NIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGE-QDKVDSVLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFE  125 (678)
T ss_pred             hhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhc-cchHHHHHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHh
Confidence            347789999999998655  566655666666666666 67788999999999999999988856889999999999988


Q ss_pred             CChHhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHH
Q 043116          101 GTSENTKVAI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW  178 (482)
Q Consensus       101 ~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~  178 (482)
                      .++..-....  ...+++.+..++..+.......-+....++|.. +..+..+.+.|+.+.+--++ ...+...+..+..
T Consensus       126 t~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~-~~hq~Il~Na~i~ekI~~l~-~~~s~~~RlaaL~  203 (678)
T KOG1293|consen  126 TSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSST-KDHQLILCNAGILEKINILL-MYLSSKLRLAALL  203 (678)
T ss_pred             cccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhcccccc-chhhheeccccchhhHHHHH-HhhhHHHHHHHHH
Confidence            5433322222  223455555555424444444444555555533 35556666666666655555 5556677778888


Q ss_pred             HHH---HhhcCCCCCChhhh-----hhHHH--HHHHHhccCChhHHHHHHHHHHHhccCCc-----------------HH
Q 043116          179 TLS---NFCRGKPQPPFNQI-----RPALR--VLAQLIRSNDEKVLTDACRALAYLADGTN-----------------DK  231 (482)
Q Consensus       179 ~L~---~L~~~~~~~~~~~~-----~~~~~--~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-----------------~~  231 (482)
                      +++   ++...++.......     .++.+  .+..++++++++.+..++.++.++...+-                 ..
T Consensus       204 ~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i  283 (678)
T KOG1293|consen  204 CLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLI  283 (678)
T ss_pred             HhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHH
Confidence            888   55555443322211     23333  33444555555555555555544432110                 00


Q ss_pred             HH----------------------------------HHHHhCcHH-----------------------------------
Q 043116          232 IQ----------------------------------AVIEAGVCP-----------------------------------  242 (482)
Q Consensus       232 ~~----------------------------------~~~~~~~l~-----------------------------------  242 (482)
                      .+                                  ...+....+                                   
T Consensus       284 ~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~  363 (678)
T KOG1293|consen  284 VQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEY  363 (678)
T ss_pred             HHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhh
Confidence            00                                  000000000                                   


Q ss_pred             -----------------HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHH
Q 043116          243 -----------------RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI  305 (482)
Q Consensus       243 -----------------~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~  305 (482)
                                       .+....-..+..++.++|.++.++++.-.....-+-..++..++++++..+ +..++..+.++
T Consensus       364 ~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp-~~~i~~~~lga  442 (678)
T KOG1293|consen  364 GLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDP-EIMIMGITLGA  442 (678)
T ss_pred             hcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCc-chhHHHHHHHH
Confidence                             000111123455677777777777764443333344567899999999888 99999999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116          306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT  385 (482)
Q Consensus       306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  385 (482)
                      |+|+..........++..|+++.+..++.+.++.++..+.|+|.++..+++......+...-....|..+.+++++.|++
T Consensus       443 i~NlVmefs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqe  522 (678)
T KOG1293|consen  443 ICNLVMEFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQE  522 (678)
T ss_pred             HHHHHhhcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHH
Confidence            99999855556788999999999999999999999999999999999987777766666666677888899999999999


Q ss_pred             HHHHHHHHHHHhchh
Q 043116          386 VCLIGLENILKVGEA  400 (482)
Q Consensus       386 ~~l~~L~~l~~~~~~  400 (482)
                      .|+..|+|+.+.++.
T Consensus       523 q~fqllRNl~c~~~~  537 (678)
T KOG1293|consen  523 QCFQLLRNLTCNSRK  537 (678)
T ss_pred             HHHHHHHHhhcCcHH
Confidence            999999999876443

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.60  E-value=4.4e-13  Score=117.61  Aligned_cols=237  Identities=18%  Similarity=0.170  Sum_probs=185.9

Q ss_pred             hhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116          196 RPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT  274 (482)
Q Consensus       196 ~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  274 (482)
                      .+-++.++.+|. +.||.+++.++.++++.+.. +.....+.+.|+++.+..++.++++.++..|+++|.|++...+.. 
T Consensus        11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~-   88 (254)
T PF04826_consen   11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQ-   88 (254)
T ss_pred             HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhH-
Confidence            567889999998 56899999999999998754 456778888999999999999999999999999999998754433 


Q ss_pred             HHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          275 QCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      ..+ +. .++.+.+.+.+ +.+..++..+..+|.|++..+ + .+.++. +.++.++.++.+++..+|..++.+|.|++.
T Consensus        89 ~~I-k~-~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~-~-~~~~l~-~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~  163 (254)
T PF04826_consen   89 EQI-KM-YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTN-D-YHHMLA-NYIPDLLSLLSSGSEKTKVQVLKVLVNLSE  163 (254)
T ss_pred             HHH-HH-HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCc-c-hhhhHH-hhHHHHHHHHHcCChHHHHHHHHHHHHhcc
Confidence            323 22 46666654443 337789999999999997642 2 234443 479999999999999999999999999998


Q ss_pred             CCCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhchhccccCC--CCcccHHHHHHHHhc-hHHHHHHh
Q 043116          354 GGTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGEAEKNTDN--IGDVNQYAQLVEEAE-GLEKIENL  429 (482)
Q Consensus       354 ~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~~~~~~~~--~~~~~~~~~~l~~~~-~~~~l~~l  429 (482)
                        ++...+.++..+++..++.+++.+ +.++...++..+.++-....+......  ....+.....|.+.+ .-++|..+
T Consensus       164 --np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l  241 (254)
T PF04826_consen  164 --NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQAL  241 (254)
T ss_pred             --CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHH
Confidence              788899999999999999999875 567888999999999665443321110  112344556777776 78899999


Q ss_pred             hcCCCHHHHHHH
Q 043116          430 QSHDNNDIHEMS  441 (482)
Q Consensus       430 ~~~~~~~v~~~a  441 (482)
                      ..|++++|+++.
T Consensus       242 ~~h~d~ev~~~v  253 (254)
T PF04826_consen  242 ANHPDPEVKEQV  253 (254)
T ss_pred             HcCCCHHHhhhc
Confidence            999999998764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.59  E-value=1.3e-12  Score=137.39  Aligned_cols=278  Identities=17%  Similarity=0.167  Sum_probs=220.7

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ....++.|++.|.++++.++..|+..|..+...            +.++.|+.+|++++ +.+|..|+..|..+....+ 
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~------------~~~~~L~~aL~D~d-~~VR~~Aa~aL~~l~~~~~-  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTPP------------GFGPALVAALGDGA-AAVRRAAAEGLRELVEVLP-  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcch------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhccC-
Confidence            334678999999999999999999999887432            26888999999988 8999999999988853111 


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                               ..+.|...|.++++.+|..++.+|..+....            ...++..+ .+.+..++..++.+|..+-
T Consensus       685 ---------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L-~D~d~~VR~~Av~aL~~~~  742 (897)
T PRK13800        685 ---------PAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAAL-GDPDHRVRIEAVRALVSVD  742 (897)
T ss_pred             ---------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHh-cCCCHHHHHHHHHHHhccc
Confidence                     2367788889999999999999999875222            23456666 7888899999999998752


Q ss_pred             cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116          185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  264 (482)
                      .             .+.+..++.++++.++..++.+|..+.....         ..++.|..+++++++.+|..|+..|+
T Consensus       743 ~-------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~d~~VR~aA~~aLg  800 (897)
T PRK13800        743 D-------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDPDPLVRAAALAALA  800 (897)
T ss_pred             C-------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            1             1346778999999999999999999875432         22578889999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      .+... +.         .++.+...+.++ ++.||..|+++|+.+..  +         ..++.|+.++.+++..||..|
T Consensus       801 ~~g~~-~~---------~~~~l~~aL~d~-d~~VR~~Aa~aL~~l~~--~---------~a~~~L~~~L~D~~~~VR~~A  858 (897)
T PRK13800        801 ELGCP-PD---------DVAAATAALRAS-AWQVRQGAARALAGAAA--D---------VAVPALVEALTDPHLDVRKAA  858 (897)
T ss_pred             hcCCc-ch---------hHHHHHHHhcCC-ChHHHHHHHHHHHhccc--c---------chHHHHHHHhcCCCHHHHHHH
Confidence            88542 11         234578889888 89999999999987742  2         256889999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLEN  393 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~  393 (482)
                      +++|..+.  +++.         ..+.|...+++++.+|+..+..+|..
T Consensus       859 ~~aL~~~~--~~~~---------a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        859 VLALTRWP--GDPA---------ARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHHHhccC--CCHH---------HHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            99999972  2333         36677788999999999999988863

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.56  E-value=1.1e-12  Score=115.01  Aligned_cols=196  Identities=20%  Similarity=0.239  Sum_probs=161.9

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116           67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR  146 (482)
Q Consensus        67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  146 (482)
                      ++.+-++.|+.+|+..++|.+++.+..++++.+. .+.+++.+.+.|+++.+..++.++++.++..|++++.|++...+ 
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh-
Confidence            5667789999999976559999999999999877 78999999999999999999999999999999999999996654 


Q ss_pred             hHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          147 CRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       147 ~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      .+..+..  .++.++...... -+.+++..++.+|.+|+.....  .....+.+|.+++++.+++..++..++++|.|++
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~--~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDY--HHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcch--hhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            3444432  466677655343 4678889999999999876433  2334678999999999999999999999999999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcC
Q 043116          226 DGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTG  269 (482)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~  269 (482)
                      .+.. ..+.++..+.+..++.++... +.++...++..+.|+..+
T Consensus       163 ~np~-~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  163 ENPD-MTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN  206 (254)
T ss_pred             cCHH-HHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence            7654 556688888999999999775 577899999999999653

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.52  E-value=1.5e-12  Score=130.87  Aligned_cols=360  Identities=15%  Similarity=0.192  Sum_probs=250.1

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .+..+.+-++++++.++-.|+++++++...+       +.+ .+++.+.+++.+++ +.+|..|+.++..+...+|+...
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~-------~~~-~l~~~v~~ll~~~~-~~VRk~A~~~l~~i~~~~p~~~~  150 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTPE-------MAE-PLIPDVIKLLSDPS-PYVRKKAALALLKIYRKDPDLVE  150 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SHH-------HHH-HHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHCHCCHH
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhcccc-------hhh-HHHHHHHHHhcCCc-hHHHHHHHHHHHHHhccCHHHHH
Confidence            5777888888999999999999999987432       222 26788899999999 99999999999999876665432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhh
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~  184 (482)
                         .. .++.+.+++.+.++.++..|+.++..+ ..++....     ..++.+...+.   ...++-.+..++.++..++
T Consensus       151 ---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~-----~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~  220 (526)
T PF01602_consen  151 ---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYK-----SLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA  220 (526)
T ss_dssp             ---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHT-----THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST
T ss_pred             ---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhh-----hhHHHHHHHhhhcccccchHHHHHHHHHHHhcc
Confidence               22 578999999999999999999999999 22222100     23344444432   5566667777778877766


Q ss_pred             cCCCCCChhhh--hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          185 RGKPQPPFNQI--RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       185 ~~~~~~~~~~~--~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      ...    ....  ..+++.+..++++.++.++..++.++..+.....      .-..+++.+..++.++++.++..++.+
T Consensus       221 ~~~----~~~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~lL~s~~~nvr~~~L~~  290 (526)
T PF01602_consen  221 PME----PEDADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAINPLIKLLSSSDPNVRYIALDS  290 (526)
T ss_dssp             SSS----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHHHHTSSSHHHHHHHHHH
T ss_pred             cCC----hhhhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhHHHHHHHhhcccchhehhHHHH
Confidence            543    1222  5688888899998899999999999998885433      223567889999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhH
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGT  340 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~  340 (482)
                      |..++...+..   + .  .....+..+. ++ +..+|..+...+..++.  +.....     +++.|...+. ..++++
T Consensus       291 L~~l~~~~~~~---v-~--~~~~~~~~l~~~~-d~~Ir~~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~  356 (526)
T PF01602_consen  291 LSQLAQSNPPA---V-F--NQSLILFFLLYDD-DPSIRKKALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDF  356 (526)
T ss_dssp             HHHHCCHCHHH---H-G--THHHHHHHHHCSS-SHHHHHHHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHH
T ss_pred             HHHhhcccchh---h-h--hhhhhhheecCCC-ChhHHHHHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhh
Confidence            99998766222   1 1  2223344555 55 88999999999999975  444443     5677888884 448889


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh
Q 043116          341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA  420 (482)
Q Consensus       341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  420 (482)
                      +..++.+++.++....+ ....     +++.+++++...++.+...+...+.+++...+...           ...    
T Consensus       357 ~~~~i~~I~~la~~~~~-~~~~-----~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~~~~~-----------~~~----  415 (526)
T PF01602_consen  357 RRELIKAIGDLAEKFPP-DAEW-----YVDTLLKLLEISGDYVSNEIINVIRDLLSNNPELR-----------EKI----  415 (526)
T ss_dssp             HHHHHHHHHHHHHHHGS-SHHH-----HHHHHHHHHHCTGGGCHCHHHHHHHHHHHHSTTTH-----------HHH----
T ss_pred             hhhHHHHHHHHHhccCc-hHHH-----HHHHHHHhhhhccccccchHHHHHHHHhhcChhhh-----------HHH----
Confidence            99999999999864221 1122     56778888887777777777777888776543321           111    


Q ss_pred             chHHHHHHh-hcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          421 EGLEKIENL-QSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       421 ~~~~~l~~l-~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                        ++.+.++ ..-.++++...+.|++..|.+...
T Consensus       416 --l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~  447 (526)
T PF01602_consen  416 --LKKLIELLEDISSPEALAAAIWILGEYGELIE  447 (526)
T ss_dssp             --HHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHT
T ss_pred             --HHHHHHHHHHhhHHHHHHHHHhhhcccCCccc
Confidence              2333333 335677788888888888765443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.52  E-value=9.5e-12  Score=130.90  Aligned_cols=276  Identities=16%  Similarity=0.197  Sum_probs=216.4

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      ..++.|+..|.+++ +.+|..|+..|+.+..           .+.++.|...|.++++.+|..|+.+|..+....+    
T Consensus       621 ~~~~~L~~~L~D~d-~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~----  684 (897)
T PRK13800        621 PSVAELAPYLADPD-PGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP----  684 (897)
T ss_pred             hhHHHHHHHhcCCC-HHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC----
Confidence            45788999999999 9999999999998743           2467899999999999999999999988853221    


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN  229 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~  229 (482)
                            ..+.+...+ ++.++.++..++.+|..+....           ...++..+.++++.++..++.+|..+..   
T Consensus       685 ------~~~~L~~~L-~~~d~~VR~~A~~aL~~~~~~~-----------~~~l~~~L~D~d~~VR~~Av~aL~~~~~---  743 (897)
T PRK13800        685 ------PAPALRDHL-GSPDPVVRAAALDVLRALRAGD-----------AALFAAALGDPDHRVRIEAVRALVSVDD---  743 (897)
T ss_pred             ------chHHHHHHh-cCCCHHHHHHHHHHHHhhccCC-----------HHHHHHHhcCCCHHHHHHHHHHHhcccC---
Confidence                  124566667 5678899999999888865321           2356778999999999999999997631   


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116          230 DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI  309 (482)
Q Consensus       230 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl  309 (482)
                                 .+.+...+.++++.||..++..|+.+.....         ..++.|..+++++ ++.||..|+.+|+++
T Consensus       744 -----------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~~~~L~~ll~D~-d~~VR~aA~~aLg~~  802 (897)
T PRK13800        744 -----------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PAGDAVRALTGDP-DPLVRAAALAALAEL  802 (897)
T ss_pred             -----------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hhHHHHHHHhcCC-CHHHHHHHHHHHHhc
Confidence                       1346678899999999999999998865322         2367788999988 899999999999988


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116          310 TAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI  389 (482)
Q Consensus       310 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~  389 (482)
                      ...  .        ..++.++..+.++++.+|..|+.+|..+..   +         ..++.|..+++++++.|+..+..
T Consensus       803 g~~--~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---~---------~a~~~L~~~L~D~~~~VR~~A~~  860 (897)
T PRK13800        803 GCP--P--------DDVAAATAALRASAWQVRQGAARALAGAAA---D---------VAVPALVEALTDPHLDVRKAAVL  860 (897)
T ss_pred             CCc--c--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---c---------chHHHHHHHhcCCCHHHHHHHHH
Confidence            532  1        133557778889999999999999987643   1         25688999999999999999999


Q ss_pred             HHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116          390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILET  447 (482)
Q Consensus       390 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  447 (482)
                      +|..+- . +                    ....+.|...+++++.+|+..|.+.|+.
T Consensus       861 aL~~~~-~-~--------------------~~a~~~L~~al~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        861 ALTRWP-G-D--------------------PAARDALTTALTDSDADVRAYARRALAH  896 (897)
T ss_pred             HHhccC-C-C--------------------HHHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence            999861 0 0                    1124556778889999999999988863

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.52  E-value=8.9e-12  Score=125.29  Aligned_cols=329  Identities=19%  Similarity=0.202  Sum_probs=245.8

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      ..+.+++++.+++...+.-+--.+..+...+ ++   .+.-  +++.+.+-+.+++ +.++..|++++++++.  ++...
T Consensus        43 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~---~~~l--~~n~l~kdl~~~n-~~~~~lAL~~l~~i~~--~~~~~  113 (526)
T PF01602_consen   43 LFMEVIKLISSKDLELKRLGYLYLSLYLHED-PE---LLIL--IINSLQKDLNSPN-PYIRGLALRTLSNIRT--PEMAE  113 (526)
T ss_dssp             THHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HH---HHHH--HHHHHHHHHCSSS-HHHHHHHHHHHHHH-S--HHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hh---HHHH--HHHHHHHhhcCCC-HHHHHHHHhhhhhhcc--cchhh
Confidence            5778888888999999998888888887764 22   1111  4677888889999 9999999999999974  66554


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      .     +++.+.+++.++++.+|..|+.++..+....|..   +... .++.+..++ .+.++.++..|+.++..+ ...
T Consensus       114 ~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL-~d~~~~V~~~a~~~l~~i-~~~  182 (526)
T PF01602_consen  114 P-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLL-SDKDPSVVSAALSLLSEI-KCN  182 (526)
T ss_dssp             H-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHT-THSSHHHHHHHHHHHHHH-HCT
T ss_pred             H-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhc-cCCcchhHHHHHHHHHHH-ccC
Confidence            3     4688899999999999999999999998665543   2222 477788888 778899999999999999 222


Q ss_pred             CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 043116          188 PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV  267 (482)
Q Consensus       188 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  267 (482)
                      +..........++.+.+++...+|-.+..+++.+..++...+.....   ..+++.+..++.+.++.+...++.++..+.
T Consensus       183 ~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  183 DDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            11111445677777788888899999999999999998766544311   456788888888889999999999999887


Q ss_pred             cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHH
Q 043116          268 TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAW  346 (482)
Q Consensus       268 ~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~  346 (482)
                      ...+      .-..+++.+..++.++ ++.+|..++..|..++...+...    .  .....+..+. +++..++..++.
T Consensus       260 ~~~~------~~~~~~~~L~~lL~s~-~~nvr~~~L~~L~~l~~~~~~~v----~--~~~~~~~~l~~~~d~~Ir~~~l~  326 (526)
T PF01602_consen  260 PSPE------LLQKAINPLIKLLSSS-DPNVRYIALDSLSQLAQSNPPAV----F--NQSLILFFLLYDDDPSIRKKALD  326 (526)
T ss_dssp             SSHH------HHHHHHHHHHHHHTSS-SHHHHHHHHHHHHHHCCHCHHHH----G--THHHHHHHHHCSSSHHHHHHHHH
T ss_pred             cchH------HHHhhHHHHHHHhhcc-cchhehhHHHHHHHhhcccchhh----h--hhhhhhheecCCCChhHHHHHHH
Confidence            6333      2235788999999988 99999999999999987553322    2  2222233444 889999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHcCChHHHHhcC-CCCCHHHHHHHHHHHHHHHHhchh
Q 043116          347 VISNATSGGTHEQIKHLVREGCVKPLCDLL-PCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       347 aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      .|..++.   +.+...     +++.|...+ ..++++++..++..+..+......
T Consensus       327 lL~~l~~---~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  327 LLYKLAN---ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHHH-----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             HHhhccc---ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            9999985   445444     567777777 455888999999888888765543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.50  E-value=9.6e-13  Score=104.02  Aligned_cols=119  Identities=34%  Similarity=0.544  Sum_probs=110.3

Q ss_pred             HHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043116           65 KVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS  144 (482)
Q Consensus        65 ~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  144 (482)
                      .+++.|+++.+++++.+++ ++++..++++|++++..+++....+.+.|+++.+++++.++++.++..++++|++++...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            4678899999999999998 899999999999999988999999999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       145 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      +..+..+.+.|+++.++..+ .+.+..+++.++|+|.+++.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l-~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLL-DSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHH-hcCCHHHHHHHHHHHHHhhC
Confidence            77788888999999999999 66688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.49  E-value=5.7e-11  Score=111.14  Aligned_cols=324  Identities=13%  Similarity=0.082  Sum_probs=229.3

Q ss_pred             hccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHh-----cCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 043116           26 FEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQ-----SGVVPRFVEFLMREDYPQLQFEAARALTNIA   99 (482)
Q Consensus        26 ~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-----~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~   99 (482)
                      ......++.+++ ..++++....+..+..++... +.....+.+     .+....++.+|..++ .-+...|+.+|+.+.
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d-~~i~~~a~~iLt~l~  129 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQD-QFIVHMSFSILAKLA  129 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCc-hhHHHHHHHHHHHHH
Confidence            346777888887 556888888999999999875 444555554     356788888998888 789999999999998


Q ss_pred             CCChHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh-hhhHHHHHH
Q 043116          100 SGTSENTKVAIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA-KLSMLRTAT  177 (482)
Q Consensus       100 ~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~~~a~  177 (482)
                      ..++.........-..+.+...+.++ +...+..|+.++..+... +.+|..+.+.++++.|+.++.... +.+++.+++
T Consensus       130 ~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~l  208 (429)
T cd00256         130 CFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSI  208 (429)
T ss_pred             hcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHH
Confidence            75443221111111334555666543 467778889999999855 457888888999999999996544 668899999


Q ss_pred             HHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCC------cHHHHHHHHhCcHHHHHHhhCC
Q 043116          178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGT------NDKIQAVIEAGVCPRLVKLLGH  250 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~------~~~~~~~~~~~~l~~L~~ll~~  250 (482)
                      .+++-|+...+........++++.++.+++. ....+.+-++.++.|+....      ......+++.|+.+ ++..|..
T Consensus       209 l~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~  287 (429)
T cd00256         209 FCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQ  287 (429)
T ss_pred             HHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhc
Confidence            9999999886533333446899999999985 46788999999999999643      12334566667655 4444433


Q ss_pred             ---CChhhHHHHHH-------HHhHhhcC--------------Ch---------hhHHHHHhc--CchHHHHHHhcCCCc
Q 043116          251 ---RSRLVLTAALR-------TIGNIVTG--------------DD---------FQTQCIINC--GALRYLLGLLIHNHN  295 (482)
Q Consensus       251 ---~~~~v~~~a~~-------~L~~l~~~--------------~~---------~~~~~l~~~--~~i~~L~~ll~~~~~  295 (482)
                         .|+++....-.       .+..++..              +|         +....+-+.  .++..|+++|..+.+
T Consensus       288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d  367 (429)
T cd00256         288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD  367 (429)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence               34443322111       11111110              11         111222222  357889999965558


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      +.+..-||.=++.++...|..+..+-+.|+=..+++++.++|++++.+|+.|+..+..
T Consensus       368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  425 (429)
T cd00256         368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKLMV  425 (429)
T ss_pred             cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            8899999999999999878877777789999999999999999999999999998854

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PTZ00429 beta-adaptin; Provisional

Probab=99.48  E-value=5.7e-10  Score=112.54  Aligned_cols=369  Identities=12%  Similarity=0.091  Sum_probs=234.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      ++.+++++.++|..++......+.+.+... ++...     -.++.|.+-+++++ +.+|..|+++++++..  ++....
T Consensus        70 F~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pelal-----LaINtl~KDl~d~N-p~IRaLALRtLs~Ir~--~~i~e~  140 (746)
T PTZ00429         70 FVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKAL-----LAVNTFLQDTTNSS-PVVRALAVRTMMCIRV--SSVLEY  140 (746)
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHHH-----HHHHHHHHHcCCCC-HHHHHHHHHHHHcCCc--HHHHHH
Confidence            455566666777777777777777776543 22111     13677888888888 9999999999998854  444332


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                           +++.+.+.+.+.++.+|..|+.++.++...+++   .+.+.+.++.+..++ .+.++.++.+|+.+|..+....+
T Consensus       141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL-~D~dp~Vv~nAl~aL~eI~~~~~  211 (746)
T PTZ00429        141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELL-NDNNPVVASNAAAIVCEVNDYGS  211 (746)
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHh-cCCCccHHHHHHHHHHHHHHhCc
Confidence                 357778888999999999999999999865553   344566788888877 78899999999999999987654


Q ss_pred             CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      . ........+..++..+...++-.+..++.+|......++...     ..++..+.+.|++.++.|...|++++.++..
T Consensus       212 ~-~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        212 E-KIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             h-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            3 234456667777777777777788888888866442222211     2567788889999999999999999999876


Q ss_pred             CC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-------------------------H
Q 043116          269 GD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-------------------------D  322 (482)
Q Consensus       269 ~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-------------------------~  322 (482)
                      .. +....... ..+...++.++ ++ +++++..+...|.-+....+......+                         .
T Consensus       286 ~~~~~~~~~~~-~rl~~pLv~L~-ss-~~eiqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~yIK~~KLeIL~~Lan  362 (746)
T PTZ00429        286 RCSQELIERCT-VRVNTALLTLS-RR-DAETQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPPFVKLEKLRLLLKLVT  362 (746)
T ss_pred             cCCHHHHHHHH-HHHHHHHHHhh-CC-CccHHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcHHHHHHHHHHHHHHcC
Confidence            43 22222221 12334455553 34 566777777666655544343222111                         0


Q ss_pred             ----cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          323 ----AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       323 ----~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                          ..++..|.++..+.+.+++..++.+++.++..- +...     ..++..|+++++.+.. +...++..+..+++..
T Consensus       363 e~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a-----~~cV~~Ll~ll~~~~~-~v~e~i~vik~Ilrky  435 (746)
T PTZ00429        363 PSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVA-----PDCANLLLQIVDRRPE-LLPQVVTAAKDIVRKY  435 (746)
T ss_pred             cccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHH-----HHHHHHHHHHhcCCch-hHHHHHHHHHHHHHHC
Confidence                013334444444556677777777777776532 2222     2366777777765433 3334566666665432


Q ss_pred             hhccccCCCCcccHHHHHHHHhchHHHHHHh---hcCCCHHHHHHHHHHHHHhcC
Q 043116          399 EAEKNTDNIGDVNQYAQLVEEAEGLEKIENL---QSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l---~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      +.             ..      .+..|...   ..-.+++.+....|++-.|-+
T Consensus       436 P~-------------~~------il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~  471 (746)
T PTZ00429        436 PE-------------LL------MLDTLVTDYGADEVVEEEAKVSLLWMLGEYCD  471 (746)
T ss_pred             cc-------------HH------HHHHHHHhhcccccccHHHHHHHHHHHHhhHh
Confidence            11             10      12333321   223456666777888887754

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.46  E-value=2.8e-12  Score=101.34  Aligned_cols=118  Identities=31%  Similarity=0.469  Sum_probs=109.6

Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116          235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR  314 (482)
Q Consensus       235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  314 (482)
                      +.+.|+++.++.++.++++.++..++++|++++...+.....+.+.|+++.+++++.++ ++.++..++|+|+|++...+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE-DEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCcH
Confidence            56779999999999999999999999999999998788888888999999999999998 99999999999999999877


Q ss_pred             HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          315 EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       315 ~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      .....+.+.|+++.+++++.+.+..++..++++|.+++.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            777788889999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.44  E-value=4.7e-12  Score=119.48  Aligned_cols=319  Identities=18%  Similarity=0.212  Sum_probs=217.7

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh----CChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ----GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       113 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                      .++|.|..+|.+++....+-|..+|..+|.+++..-+.-...    -.+|.+++.. +++++.++..|+.++..+....+
T Consensus       128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~-~h~spkiRs~A~~cvNq~i~~~~  206 (885)
T KOG2023|consen  128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFF-KHPSPKIRSHAVGCVNQFIIIQT  206 (885)
T ss_pred             hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHH-hCCChhHHHHHHhhhhheeecCc
Confidence            367899999999999999999999999998876532221111    2477788888 77799999999999988877654


Q ss_pred             CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ..-...+..++..+..+-+++++++|..+|+++..+.+..+++..-.. .++++.++..-++.++.|..+||.....++.
T Consensus       207 qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl-~~IveyML~~tqd~dE~VALEACEFwla~ae  285 (885)
T KOG2023|consen  207 QALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHL-DNIVEYMLQRTQDVDENVALEACEFWLALAE  285 (885)
T ss_pred             HHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccch-HHHHHHHHHHccCcchhHHHHHHHHHHHHhc
Confidence            444445578888888888899999999999999999977665433222 2677888888888999999999999999997


Q ss_pred             CChhhHHHHH--hcCchHHHHHHhcCCCch------------------hHHH----------------------------
Q 043116          269 GDDFQTQCII--NCGALRYLLGLLIHNHNK------------------SIKK----------------------------  300 (482)
Q Consensus       269 ~~~~~~~~l~--~~~~i~~L~~ll~~~~~~------------------~v~~----------------------------  300 (482)
                      ... ....+.  -..++|.|+.-+.+++..                  ++|-                            
T Consensus       286 qpi-~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD  364 (885)
T KOG2023|consen  286 QPI-CKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDD  364 (885)
T ss_pred             CcC-cHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccc
Confidence            542 111111  124666666554332110                  0000                            


Q ss_pred             -HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH----hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116          301 -EVCWIISNITAGNREQIQAVIDAGLIGPIVNLL----QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL  375 (482)
Q Consensus       301 -~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll----~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  375 (482)
                       ..-|-|..++...-+....++...+++.++.++    .+++..+|+.++-|++.++.++..-....+-+  .++.|+++
T Consensus       365 ~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lpe--Lip~l~~~  442 (885)
T KOG2023|consen  365 AFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPE--LIPFLLSL  442 (885)
T ss_pred             ccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHH--HHHHHHHH
Confidence             011444444433333344444445555555555    46788999999999999998654444444333  78999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043116          376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       376 l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  448 (482)
                      +.+..+-||..++|.|+++....-....      ..-++..      ++-|..-.-+.|.+|+++|-.....+
T Consensus       443 L~DKkplVRsITCWTLsRys~wv~~~~~------~~~f~pv------L~~ll~~llD~NK~VQEAAcsAfAtl  503 (885)
T KOG2023|consen  443 LDDKKPLVRSITCWTLSRYSKWVVQDSR------DEYFKPV------LEGLLRRLLDSNKKVQEAACSAFATL  503 (885)
T ss_pred             hccCccceeeeeeeeHhhhhhhHhcCCh------HhhhHHH------HHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999998765433210      1112222      33344445568899999988777644

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.43  E-value=1.9e-10  Score=110.52  Aligned_cols=367  Identities=17%  Similarity=0.198  Sum_probs=243.9

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           27 EILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        27 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ..+..++...++.  +..+++.|+.+|.+-....+.-...+.-..-++...++.-++++ .+++..|+.||..|..-..+
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d-~~i~~aa~~ClvkIm~LyY~  250 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD-EEIQVAAFQCLVKIMSLYYE  250 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc-HHHHHHHHHHHHHHHHHHHH
Confidence            3678888888744  57889999999998876642222333334445666777778888 89999999999999886677


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------hHHHH--HHhCChHHHHHHHcc
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR----------------CRDFV--LSQGALIPLLAELNE  166 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------~~~~~--~~~~~i~~l~~~l~~  166 (482)
                      +-...+....+..-+.-++++++++.-+++...+++|.+.-.                +....  .-.+++|.|+.+|.+
T Consensus       251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k  330 (859)
T KOG1241|consen  251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK  330 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence            766666666777777888899999999999999999842111                00000  012467888888854


Q ss_pred             h-h-----hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043116          167 H-A-----KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV  240 (482)
Q Consensus       167 ~-~-----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  240 (482)
                      . +     +-..-..|..||.-++...   ...+...++|++-+-++++|+.-+..+..+++.+..+.......-+-.+.
T Consensus       331 qde~~d~DdWnp~kAAg~CL~l~A~~~---~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qa  407 (859)
T KOG1241|consen  331 QDEDDDDDDWNPAKAAGVCLMLFAQCV---GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQA  407 (859)
T ss_pred             CCCCcccccCcHHHHHHHHHHHHHHHh---cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhh
Confidence            2 1     1123333444444433321   12234578888888889999999999999999999887765555555688


Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH-
Q 043116          241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ-  318 (482)
Q Consensus       241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~-  318 (482)
                      ++.++.++.+++--++..+.|+++.++...++.+ ........++.++..|.+  .|++-..+||++.+++.+.++... 
T Consensus       408 lp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~Laea~~eA~~s  485 (859)
T KOG1241|consen  408 LPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISLAEAAYEAAVS  485 (859)
T ss_pred             hHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHHHHHHHHhccC
Confidence            9999999998888899999999999998766432 223334667777777765  578999999999999853222110 


Q ss_pred             --------HHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhhcCCCHHHHHHHHHc--CChHHHHh-----cCCCCC
Q 043116          319 --------AVIDAGLIGPIVNLLQD---AEFGTKKEAAWVISNATSGGTHEQIKHLVRE--GCVKPLCD-----LLPCPD  380 (482)
Q Consensus       319 --------~l~~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~--~~l~~L~~-----ll~~~~  380 (482)
                              .+.+ .++..|+..-+.   .+..+|..|..||..+..+++......+...  -.+..|-+     .++..+
T Consensus       486 ~~qt~~~t~~y~-~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~d  564 (859)
T KOG1241|consen  486 NGQTDPATPFYE-AIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLAD  564 (859)
T ss_pred             CCCCCccchhHH-HHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhh
Confidence                    1111 134444444442   3567999999999999998765554443221  11222222     333333


Q ss_pred             H----HHHHHHHHHHHHHHHhchh
Q 043116          381 P----QIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       381 ~----~v~~~~l~~L~~l~~~~~~  400 (482)
                      .    ++....+..|..+.+....
T Consensus       565 r~q~~eLQs~Lc~~Lq~i~rk~~~  588 (859)
T KOG1241|consen  565 RAQLNELQSLLCNTLQSIIRKVGS  588 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccc
Confidence            2    3555555666666655443

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.41  E-value=1.2e-10  Score=108.87  Aligned_cols=283  Identities=15%  Similarity=0.155  Sum_probs=204.3

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      ......++.+++.+|.-++..|+..|..+.+... .........-+++.+...+++++....+..|+.+|..+.. .++.
T Consensus       100 ~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~-~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~  177 (429)
T cd00256         100 KKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGL-AKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEY  177 (429)
T ss_pred             ccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCc-cccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchH
Confidence            4567788889998999999999999999988642 2211111222445666677665436788889999999988 7899


Q ss_pred             HHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          106 TKVAIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      |..+.+.++++.|..+|+..  +..++..++.+++-++...+ ........+.++.++.++.....+.+.+.++.+|.|+
T Consensus       178 R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nl  256 (429)
T cd00256         178 RFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNL  256 (429)
T ss_pred             HHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            99999999999999999753  56788899999999986654 4556667789999999998888999999999999999


Q ss_pred             hcCCCCC------ChhhhhhHHHHHHHHhcc---CChhHHHHHHHHH-------HHhcc------------------C-C
Q 043116          184 CRGKPQP------PFNQIRPALRVLAQLIRS---NDEKVLTDACRAL-------AYLAD------------------G-T  228 (482)
Q Consensus       184 ~~~~~~~------~~~~~~~~~~~L~~ll~~---~~~~~~~~~l~~L-------~~l~~------------------~-~  228 (482)
                      .......      ...+....++.++..|..   .|+++....-..-       ..++.                  + +
T Consensus       257 l~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~s  336 (429)
T cd00256         257 ISKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKS  336 (429)
T ss_pred             hhcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCC
Confidence            9864211      112223233444444442   3555544322221       12221                  1 0


Q ss_pred             c----HHHHHHHHh--CcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHH
Q 043116          229 N----DKIQAVIEA--GVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKE  301 (482)
Q Consensus       229 ~----~~~~~~~~~--~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~  301 (482)
                      +    ++...+-+.  .++..|+.+|. +.++.+..-||.=|+.++...|.....+-+.|+=..++.++.++ +++||.+
T Consensus       337 e~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~e  415 (429)
T cd00256         337 EKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHE-DPNVRYE  415 (429)
T ss_pred             chHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCC-CHHHHHH
Confidence            0    122223333  36788889984 56788889999999999998887777777789999999999999 9999999


Q ss_pred             HHHHHHHHhcC
Q 043116          302 VCWIISNITAG  312 (482)
Q Consensus       302 a~~~L~nl~~~  312 (482)
                      |..++..++.+
T Consensus       416 AL~avQklm~~  426 (429)
T cd00256         416 ALLAVQKLMVH  426 (429)
T ss_pred             HHHHHHHHHHh
Confidence            99999887643

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=4.7e-10  Score=109.03  Aligned_cols=344  Identities=16%  Similarity=0.156  Sum_probs=252.2

Q ss_pred             hccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           26 FEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        26 ~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ...+|.|+.+|+.+ +++++..|+++|.+|+..- +.....+++.+.+|.|+.-|..-.+-++-++++.+|-.|++..+ 
T Consensus       210 ~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~-  287 (1051)
T KOG0168|consen  210 KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP-  287 (1051)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc-
Confidence            34689999999955 6999999999999999876 55677788999999999887766668999999999999987443 


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                        ..+++.|.+...+.++.--+..+++.|+.+..|.|..- +.--..+++  .+|.|..++ ...|....+.++-++..+
T Consensus       288 --~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~e--alPlL~~lL-s~~D~k~ies~~ic~~ri  362 (1051)
T KOG0168|consen  288 --KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVME--ALPLLTPLL-SYQDKKPIESVCICLTRI  362 (1051)
T ss_pred             --HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHHH--HHHHHHHHH-hhccchhHHHHHHHHHHH
Confidence              56889999999999998888899999999999999432 222244554  688888888 777788888888888888


Q ss_pred             hcCC-CCCChh---hhhhHHHHHHHHhccCC----hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC---
Q 043116          184 CRGK-PQPPFN---QIRPALRVLAQLIRSND----EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS---  252 (482)
Q Consensus       184 ~~~~-~~~~~~---~~~~~~~~L~~ll~~~~----~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---  252 (482)
                      +... +.....   ...+++.-..+++....    ..+....++.+..++.+.+-....+...++...+..+|...+   
T Consensus       363 ~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s~  442 (1051)
T KOG0168|consen  363 ADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKSA  442 (1051)
T ss_pred             HHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcCc
Confidence            8765 222221   22577888888877442    445666778888888887777777777777777777664210   


Q ss_pred             -----------hhhHHHHHHHHhHh------------------------------------------------hc-----
Q 043116          253 -----------RLVLTAALRTIGNI------------------------------------------------VT-----  268 (482)
Q Consensus       253 -----------~~v~~~a~~~L~~l------------------------------------------------~~-----  268 (482)
                                 |.-.......+..+                                                ..     
T Consensus       443 nas~~~~l~r~Pnel~e~~sl~~eLlp~~p~e~i~~~~~~~~~~~~n~~~~~~~~~~d~~~s~~~~~~~~~ri~~q~~~~  522 (1051)
T KOG0168|consen  443 NASLHELLSRSPNELYELTSLIIELLPCLPVEGIFAVDCSLIYEIVNLADELLWQWRDDRGSWHTYTNIDSRIIEQINED  522 (1051)
T ss_pred             ccccccccccCcHHHHHHHHHHheeecCCcccceeehhhhhhcccccccccccccCccccccccccchhhhhhhhhhccC
Confidence                       11000111111000                                                00     


Q ss_pred             ---------------------CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCC
Q 043116          269 ---------------------GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVID-AGL  325 (482)
Q Consensus       269 ---------------------~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~  325 (482)
                                           +.++..+.+. ..+++.|+++..+.-++.||..+..+|..+.. .+.+.+..+++ ..+
T Consensus       523 ~~t~~~~~dkl~~~~r~~~l~nqpel~q~F~-~~llpVLveVYsSsA~~~VR~kcL~Ailrlvy~s~seli~slLk~~~v  601 (1051)
T KOG0168|consen  523 TGTSRKQQDKLNGSAREGLLKNQPELLQSFG-KDLLPVLVEVYSSSANPDVRYKCLSAILRLVYFSNSELIGSLLKNTNV  601 (1051)
T ss_pred             cccchhhhhhcCCchhhhhhhcCHHHHHHHH-HHHHHHHHHHHhccCCchhhHHHHHHHHHHHhhCCHHHHHHHHhcchH
Confidence                                 0111111111 13688899999888899999999999999987 67888888886 445


Q ss_pred             hHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116          326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP  377 (482)
Q Consensus       326 i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  377 (482)
                      -..+-.++.+.+..+..-|+....-|...-..-+...+..+|++..+-++..
T Consensus       602 SS~lAG~lsskD~~vlVgALQvAEiLmeKlpd~F~~~F~REGV~~~v~~L~~  653 (1051)
T KOG0168|consen  602 SSHLAGMLSSKDLTVLVGALQVAEILMEKLPDTFSPSFRREGVFHAVKQLSV  653 (1051)
T ss_pred             HHHHHhhhhcCCCeeEeehHHHHHHHHHHhHHHhhhhHhhhhHHHHHHHHhc
Confidence            5667778888999888888888887777656667778888999888888876

>PTZ00429 beta-adaptin; Provisional

Probab=99.38  E-value=1.3e-08  Score=102.84  Aligned_cols=295  Identities=16%  Similarity=0.086  Sum_probs=208.6

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHH-HHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATT-LFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~-~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      .|-+..|-+.|++.+...+..+++ .+..++.+.  +..      .+++.+++++.+++ .+++.-....+.+++...++
T Consensus        31 kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~--DvS------~LF~dVvk~~~S~d-~elKKLvYLYL~~ya~~~pe  101 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR--DVS------YLFVDVVKLAPSTD-LELKKLVYLYVLSTARLQPE  101 (746)
T ss_pred             cchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--Cch------HHHHHHHHHhCCCC-HHHHHHHHHHHHHHcccChH
Confidence            345667778888888887888877 445555543  222      25777888999998 89999999999999876665


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      ..-     -.++.|.+-+.++++.+|..|+++++++-  .+..-+.     .+..+.+.+ .+.++-+++.|+.++..+.
T Consensus       102 lal-----LaINtl~KDl~d~Np~IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L-~D~~pYVRKtAalai~Kly  168 (746)
T PTZ00429        102 KAL-----LAVNTFLQDTTNSSPVVRALAVRTMMCIR--VSSVLEY-----TLEPLRRAV-ADPDPYVRKTAAMGLGKLF  168 (746)
T ss_pred             HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Confidence            422     24688888899999999999999999984  2332222     355666667 6788999999999999998


Q ss_pred             cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116          185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  264 (482)
                      ...|..  ....+.++.+..++.+.++.+..+|+.+|..+....+...  -...+.+..++..+..-++-.+...+.+|.
T Consensus       169 ~~~pel--v~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l--~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~  244 (746)
T PTZ00429        169 HDDMQL--FYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKI--ESSNEWVNRLVYHLPECNEWGQLYILELLA  244 (746)
T ss_pred             hhCccc--ccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhh--HHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            876532  2235678889999999999999999999999986654332  223455677777777767777777777775


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKE  343 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~  343 (482)
                      ...-.++...     ..++..+...|++. ++.|.-+|+.++.++... .++....... .+.+.++.+ .+.+++++..
T Consensus       245 ~y~P~~~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyv  316 (746)
T PTZ00429        245 AQRPSDKESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYI  316 (746)
T ss_pred             hcCCCCcHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHH
Confidence            4322222211     24677888889998 899999999999998753 2343333222 233455555 3566788888


Q ss_pred             HHHHHHHhhcC
Q 043116          344 AAWVISNATSG  354 (482)
Q Consensus       344 a~~aL~~l~~~  354 (482)
                      ++..|..++..
T Consensus       317 aLr~I~~i~~~  327 (746)
T PTZ00429        317 VCKNIHALLVI  327 (746)
T ss_pred             HHHHHHHHHHH
Confidence            87777666553

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=4.8e-10  Score=107.86  Aligned_cols=364  Identities=15%  Similarity=0.168  Sum_probs=231.5

Q ss_pred             cHHHHHHHhcCCCH-HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           28 ILPTMVAGVWSDDN-KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL-MREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        28 ~i~~l~~~l~s~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .++.|+.....+.+ .++..++.++..++.+-.++ .-.--.+.++..+++-. +.+.+..+|..|+.+|.|-..-...+
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pe-vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~n  208 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE-VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKAN  208 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH-HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            45556666655554 47888999999999875322 21112344555555554 34444789999999999865422212


Q ss_pred             HHHHHhCC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          106 TKVAIDHG-AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       106 ~~~~~~~g-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      -..=.+.+ ++...++.-++++.+++..|..||..|..-.-..-..-+....+..-+.-+ .++++++.-.+....+++|
T Consensus       209 F~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~am-ks~~deValQaiEFWstic  287 (859)
T KOG1241|consen  209 FNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAM-KSDNDEVALQAIEFWSTIC  287 (859)
T ss_pred             hccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHHHH
Confidence            11112223 446677788889999999999999998632222112222223444445556 4677788888888888888


Q ss_pred             cCCCC------------CC---hh----hhhhHHHHHHHHhcc-------CChhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043116          185 RGKPQ------------PP---FN----QIRPALRVLAQLIRS-------NDEKVLTDACRALAYLADGTNDKIQAVIEA  238 (482)
Q Consensus       185 ~~~~~------------~~---~~----~~~~~~~~L~~ll~~-------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~  238 (482)
                      .....            ..   .-    ....++|.|+++|..       +++.....+-.||.-+++...+.   ++. 
T Consensus       288 eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D~---Iv~-  363 (859)
T KOG1241|consen  288 EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGDD---IVP-  363 (859)
T ss_pred             HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhccc---chh-
Confidence            64211            11   11    125788888888864       23566677777776666332211   222 


Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116          239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ  318 (482)
Q Consensus       239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  318 (482)
                      .+++.+-.-++++++.-+..+..+++.+..+.+.....-+-.+++|.++.++.++ .-.++..++|+++.++.+.++.+-
T Consensus       364 ~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~  442 (859)
T KOG1241|consen  364 HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAII  442 (859)
T ss_pred             hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcc
Confidence            3455555567889999999999999999987766655556668999999999977 888999999999999986665432


Q ss_pred             HH-HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCH---------HHHHHHHHcCChHHHHhcCCC---CCHHHHH
Q 043116          319 AV-IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH---------EQIKHLVREGCVKPLCDLLPC---PDPQIVT  385 (482)
Q Consensus       319 ~l-~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~---------~~~~~l~~~~~l~~L~~ll~~---~~~~v~~  385 (482)
                      .- .....++.++.-+. +.|.+..+++|++.+++.....         ...+.+.  ..+..|+..-+.   .+..+|.
T Consensus       443 n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~--~ii~~Ll~~tdr~dgnqsNLR~  519 (859)
T KOG1241|consen  443 NQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYE--AIIGSLLKVTDRADGNQSNLRS  519 (859)
T ss_pred             cHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHH--HHHHHHHhhccccccchhhHHH
Confidence            21 12345555555555 5688999999999999852100         0000100  023333333332   3346888


Q ss_pred             HHHHHHHHHHHhchhc
Q 043116          386 VCLIGLENILKVGEAE  401 (482)
Q Consensus       386 ~~l~~L~~l~~~~~~~  401 (482)
                      .+.++|..+++.++..
T Consensus       520 AAYeALmElIk~st~~  535 (859)
T KOG1241|consen  520 AAYEALMELIKNSTDD  535 (859)
T ss_pred             HHHHHHHHHHHcCcHH
Confidence            9999999999877664

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=3.1e-08  Score=95.09  Aligned_cols=218  Identities=17%  Similarity=0.177  Sum_probs=160.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      -+-++.+|++..|-++..|...+.++.-.. ++..+     ..+|.|..-|.+++ |.++..|+.+++.++..+|++.- 
T Consensus       146 a~Dv~tLL~sskpYvRKkAIl~lykvFLkY-PeAlr-----~~FprL~EkLeDpD-p~V~SAAV~VICELArKnPknyL-  217 (877)
T KOG1059|consen  146 ADDVFTLLNSSKPYVRKKAILLLYKVFLKY-PEALR-----PCFPRLVEKLEDPD-PSVVSAAVSVICELARKNPQNYL-  217 (877)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhh-hHhHh-----hhHHHHHHhccCCC-chHHHHHHHHHHHHHhhCCcccc-
Confidence            466788888888888888888888877654 22222     25788888888888 89999999999999887776532 


Q ss_pred             HHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          109 AIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                          ..-|.+.+++-+. +.=+....+..+++++--.|.....     .++++..++..+.-..+...++.++...+...
T Consensus       218 ----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~  288 (877)
T KOG1059|consen  218 ----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS  288 (877)
T ss_pred             ----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence                2347777777643 3334445777888887555554443     57899999966666677777766655442222


Q ss_pred             C-CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116          188 P-QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI  266 (482)
Q Consensus       188 ~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  266 (482)
                      . ........-+++.|-.++.+.|+..+.-.+.+++.+...++...+..     -+.++++|.+.++++|..|+..+.-+
T Consensus       289 g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~DkD~SIRlrALdLl~gm  363 (877)
T KOG1059|consen  289 GMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDKDESIRLRALDLLYGM  363 (877)
T ss_pred             CCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccCCchhHHHHHHHHHHH
Confidence            1 13344456788888899999999999999999999998777655433     36789999999999999999999888


Q ss_pred             hc
Q 043116          267 VT  268 (482)
Q Consensus       267 ~~  268 (482)
                      ..
T Consensus       364 Vs  365 (877)
T KOG1059|consen  364 VS  365 (877)
T ss_pred             hh
Confidence            75

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.22  E-value=2.8e-09  Score=96.32  Aligned_cols=309  Identities=15%  Similarity=0.083  Sum_probs=209.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      -+..+..+..++.-+...+.+++..+++.. +....-..-.-....+-..+++.++++...-|++||..+.. -++.|..
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~~  193 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-NCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRYA  193 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhhe
Confidence            677889999999988888999999999875 22211101111133344555554436888889999999998 7899999


Q ss_pred             HHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          109 AIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      ++..+++..++..+.+  .+-.++.+.+.+++.++..++. .+.+...+.++.|..++..+..+.+.+.++.++.|++..
T Consensus       194 ~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~-ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  194 FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHA-AEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHH-HHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999998842  4577888999999999865544 466677889999999998888999999999999999998


Q ss_pred             CCCCChh------hhhhHHHHHHHHhcc---CChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCCCChhhH
Q 043116          187 KPQPPFN------QIRPALRVLAQLIRS---NDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGHRSRLVL  256 (482)
Q Consensus       187 ~~~~~~~------~~~~~~~~L~~ll~~---~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~  256 (482)
                      .+.....      +..+-++..++.|..   .|+++....-..-..+-..    .+.+... ....-+..-.-+-+|..+
T Consensus       273 ~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~s----vq~LsSFDeY~sEl~sG~L~WSP~Hk  348 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNS----VQDLSSFDEYKSELRSGRLEWSPVHK  348 (442)
T ss_pred             CchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH----HHhhccHHHHHHHHHhCCcCCCcccc
Confidence            7533222      223334444444442   3555554443332222211    0000000 000111111111122222


Q ss_pred             HHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116          257 TAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       257 ~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      ..-.|      +   +....+-+.  .++..|+++|+.+.+|.+-.-||.=++.+.++.|+....+.+.|+=..+++++.
T Consensus       349 ~e~FW------~---eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln  419 (442)
T KOG2759|consen  349 SEKFW------R---ENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN  419 (442)
T ss_pred             ccchH------H---HhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc
Confidence            22111      0   111112211  367889999999878999999999999999999998888889999999999999


Q ss_pred             cCChhHHHHHHHHHHHhhc
Q 043116          335 DAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       335 ~~~~~~~~~a~~aL~~l~~  353 (482)
                      ++|++|+.+|+.|+..+..
T Consensus       420 h~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  420 HEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             CCCchHHHHHHHHHHHHHh
Confidence            9999999999999988865

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=1.2e-08  Score=91.21  Aligned_cols=190  Identities=19%  Similarity=0.223  Sum_probs=159.7

Q ss_pred             CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 043116          209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG  288 (482)
Q Consensus       209 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~  288 (482)
                      .+.+-+..++.-|..+++.-+ ....+...|++..++..+.+++..+|..|+++|+..+.++|.....+++.|+++.|+.
T Consensus        95 ~~le~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~  173 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLK  173 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHH
Confidence            456677788888888885543 4556888899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116          289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVRE  366 (482)
Q Consensus       289 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~  366 (482)
                      ++.+..+..+|..|.++++.+.+..+.....+...+....|.+++++  .+..++..++..+..++.. .......+...
T Consensus       174 ~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~-~~s~~d~~~~~  252 (342)
T KOG2160|consen  174 ILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQE-DKSDEDIASSL  252 (342)
T ss_pred             HHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh-hhhhhhHHHHh
Confidence            99988677899999999999999888888899998889999999998  6778888899999999874 33444455566


Q ss_pred             CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          367 GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       367 ~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +....+..+....+.++.+.++.++-.+......
T Consensus       253 ~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~  286 (342)
T KOG2160|consen  253 GFQRVLENLISSLDFEVNEAALTALLSLLSELST  286 (342)
T ss_pred             hhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhh
Confidence            7777788888888889999988888777655444

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=5.7e-09  Score=93.13  Aligned_cols=183  Identities=19%  Similarity=0.217  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH
Q 043116           85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL  164 (482)
Q Consensus        85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  164 (482)
                      .+-++.|+.-|..++. +-++...+...|++..++..+.+.+.++|+.|+|+|+..+..+|..+..+++.|+++.|+..+
T Consensus        97 le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~l  175 (342)
T KOG2160|consen   97 LEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKIL  175 (342)
T ss_pred             HHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHH
Confidence            7788999999998886 788889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHHHhhcCCCCCChh-hhhhHHHHHHHHhcc--CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH
Q 043116          165 NEHAKLSMLRTATWTLSNFCRGKPQPPFN-QIRPALRVLAQLIRS--NDEKVLTDACRALAYLADGTNDKIQAVIEAGVC  241 (482)
Q Consensus       165 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~~L~~ll~~--~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l  241 (482)
                      ..+.+..++..|+++++.+.+..+..... ...+....|...+.+  .+...+..++..+..+..........+...++-
T Consensus       176 s~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f~  255 (342)
T KOG2160|consen  176 SSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGFQ  255 (342)
T ss_pred             ccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Confidence            77777788899999999999998444333 334668899999998  567788999999999997666555555556777


Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          242 PRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ..+..+....+.++...++..+..+..
T Consensus       256 ~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  256 RVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            777777777888888888777766654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=1.8e-07  Score=90.97  Aligned_cols=324  Identities=15%  Similarity=0.180  Sum_probs=238.7

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCCh---
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSS---  145 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~---  145 (482)
                      .++.|+.-+.+..-.+-|+.|++.|-.+++   ++|..+... ++++|+..|+.  .|+++...++.++.++..+..   
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~sr---kYR~~Vga~-Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~   98 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSR---KYREEVGAQ-GMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE   98 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHH---HHHHHHHHc-ccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence            577888777766657889999999999975   777766654 58999999875  578999999999999985442   


Q ss_pred             ---h----------hHH-HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhh---hhhHHHHHHHHhcc
Q 043116          146 ---R----------CRD-FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ---IRPALRVLAQLIRS  208 (482)
Q Consensus       146 ---~----------~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~---~~~~~~~L~~ll~~  208 (482)
                         .          ..+ .+...+.|..++..+ ...|-.++..++..+.++.+..|......   ..-++..++.+|++
T Consensus        99 v~dds~qsdd~g~~iae~fik~qd~I~lll~~~-e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~D  177 (970)
T KOG0946|consen   99 VMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSL-EEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRD  177 (970)
T ss_pred             hcccchhhhHHHHHHHHHHHcCchhHHHHHHHH-HhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhh
Confidence               1          112 233346677788888 77788999999999999998875433222   25788899999999


Q ss_pred             CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC----ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchH
Q 043116          209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR----SRLVLTAALRTIGNIVTGDDFQTQCIINCGALR  284 (482)
Q Consensus       209 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~  284 (482)
                      ....+|..++..|..++..++...+.+.-.+++..|..++...    ..-|...|+..|.|+...+......+.+.+.+|
T Consensus       178 srE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~  257 (970)
T KOG0946|consen  178 SREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIP  257 (970)
T ss_pred             hhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHH
Confidence            9999999999999999988876666666668999999999652    235888999999999999999889899999999


Q ss_pred             HHHHHhcCCC--c--------hhH--HHHHHHHHHHHhc-CCH----HHH-HHHHHcCChHHHHHHHhcC--ChhHHHHH
Q 043116          285 YLLGLLIHNH--N--------KSI--KKEVCWIISNITA-GNR----EQI-QAVIDAGLIGPIVNLLQDA--EFGTKKEA  344 (482)
Q Consensus       285 ~L~~ll~~~~--~--------~~v--~~~a~~~L~nl~~-~~~----~~~-~~l~~~~~i~~L~~ll~~~--~~~~~~~a  344 (482)
                      .|.++|....  +        .+|  -..+..++..+.. +++    ... +.+...+++..|+.++.++  ..+++..+
T Consensus       258 rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltes  337 (970)
T KOG0946|consen  258 RLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTES  337 (970)
T ss_pred             HHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHH
Confidence            9998886421  1        111  1345666666665 222    222 3455789999999998865  56788999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCC----------hHHHHhcCCC-CCHHHHHHHHHHHHHHHHhchh
Q 043116          345 AWVISNATSGGTHEQIKHLVREGC----------VKPLCDLLPC-PDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~----------l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +.++.+.+.. +......+.+..+          +-.++.+..+ ..+..|.+++.++..++.....
T Consensus       338 iitvAevVRg-n~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~  403 (970)
T KOG0946|consen  338 IITVAEVVRG-NARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDD  403 (970)
T ss_pred             HHHHHHHHHh-chHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchh
Confidence            9999999874 5555555554311          1123333333 4457899999999998865444

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.11  E-value=9.2e-08  Score=92.20  Aligned_cols=398  Identities=14%  Similarity=0.164  Sum_probs=247.2

Q ss_pred             chhhhhhhcc---HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHH
Q 043116           19 SLNLQSKFEI---LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY-PQLQFEAARA   94 (482)
Q Consensus        19 ~~~~~~~~~~---i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~-~~v~~~a~~~   94 (482)
                      ...+..++|.   +.+++.-++++.+..+...+....++...-+.....+-.++-.+..++..++.++. ..+-.....+
T Consensus       705 tv~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~  784 (1172)
T KOG0213|consen  705 TVEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGT  784 (1172)
T ss_pred             HHHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHH
Confidence            3445667774   56667777788888888888888877765433334444455566666666665542 2223333333


Q ss_pred             HHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH--HHHHHhCChHHHHHHHcchhhhhH
Q 043116           95 LTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR--DFVLSQGALIPLLAELNEHAKLSM  172 (482)
Q Consensus        95 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~~i~~l~~~l~~~~~~~~  172 (482)
                      +.+-...  ..+..+  ..++..++..|++.++.+|.+|+..++.++.--..+.  +.+...|  -.|...+ ....+++
T Consensus       785 V~~~lg~--r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEyl-geeypEv  857 (1172)
T KOG0213|consen  785 VVNALGG--RVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYL-GEEYPEV  857 (1172)
T ss_pred             HHHHHhh--ccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhc-CcccHHH
Confidence            3332221  001111  1355677888999999999999999999873222221  1122212  1244444 5667788


Q ss_pred             HHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC
Q 043116          173 LRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR  251 (482)
Q Consensus       173 ~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~  251 (482)
                      .-..+.++..++... -.....-+.+++|.|..+|++....++.+++..++.++...++....--=..+.--|+.+|+..
T Consensus       858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkah  937 (1172)
T KOG0213|consen  858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAH  937 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHH
Confidence            877777777776543 1122233578999999999999999999999999999987765432111112334577778888


Q ss_pred             ChhhHHHHHHHHhHhhcCC--hhhHHHHH----------------------h-c---CchHHHHHHhcCCCchhHHHHHH
Q 043116          252 SRLVLTAALRTIGNIVTGD--DFQTQCII----------------------N-C---GALRYLLGLLIHNHNKSIKKEVC  303 (482)
Q Consensus       252 ~~~v~~~a~~~L~~l~~~~--~~~~~~l~----------------------~-~---~~i~~L~~ll~~~~~~~v~~~a~  303 (482)
                      +.++|.+|..+++.++..-  .+....++                      + +   .++|.|+.=.+.+ +..|+.-..
T Consensus       938 kK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtP-e~nVQnGVL 1016 (1172)
T KOG0213|consen  938 KKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTP-EANVQNGVL 1016 (1172)
T ss_pred             HHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCc-hhHHHHhHH
Confidence            8899999999888887532  11111111                      1 1   2455566555666 777888888


Q ss_pred             HHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-----
Q 043116          304 WIISNITAGNREQ-IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-----  377 (482)
Q Consensus       304 ~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-----  377 (482)
                      .+++.+.....+. ..++.  -+.|.|-+.|.+.|.--+..|+.++.+++.+..        -.|+.+.++.+|.     
T Consensus      1017 kalsf~FeyigemskdYiy--av~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~--------g~g~eda~iHLLN~iWpN 1086 (1172)
T KOG0213|consen 1017 KALSFMFEYIGEMSKDYIY--AVTPLLEDALMDRDLVHRQTAMNVIKHLALGVP--------GTGCEDALIHLLNLIWPN 1086 (1172)
T ss_pred             HHHHHHHHHHHHHhhhHHH--HhhHHHHHhhccccHHHHHHHHHHHHHHhcCCC--------CcCcHHHHHHHHHHhhhh
Confidence            8888776522221 22222  267778888888888899999999999987521        2244444444443     


Q ss_pred             --CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          378 --CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       378 --~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                        .+.|.+.....+++..+-..                   +-..-.+..+.+=+-|+...|++..=++.+.++....
T Consensus      1087 Ile~sPhviqa~~e~~eg~r~~-------------------Lg~~~~~~Y~~QGLFHParkVR~~yw~vyn~my~~~~ 1145 (1172)
T KOG0213|consen 1087 ILETSPHVIQAFDEAMEGLRVA-------------------LGPQAMLKYCLQGLFHPARKVRKRYWTVYNSMYHGSQ 1145 (1172)
T ss_pred             hcCCChHHHHHHHHHHHHHHHH-------------------hchHHHHHHHHHhccCcHHHHHHHHHHHHHhHhhccc
Confidence              56677777766666665421                   1111124455555678999999888888887665553

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=5.2e-07  Score=87.82  Aligned_cols=324  Identities=16%  Similarity=0.180  Sum_probs=239.5

Q ss_pred             hhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-CChHHHHHHHHHHHHHhCCC
Q 043116           25 KFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-DYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~~  102 (482)
                      ....|+.|...+.+. -++-+..|+..|..++...    +..+.. -+++.|++.|+.+ .++++...++.++.++..++
T Consensus        20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY----R~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d   94 (970)
T KOG0946|consen   20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY----REEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD   94 (970)
T ss_pred             HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH----HHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence            344688999988754 4788999999999998763    444444 4578888888643 34899999999999998754


Q ss_pred             h------Hh----------HHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHh-CChHHHHHH
Q 043116          103 S------EN----------TKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQ-GALIPLLAE  163 (482)
Q Consensus       103 ~------~~----------~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~-~~i~~l~~~  163 (482)
                      +      +.          .+.++ ..+.|..++..+...|-.+|..++..|.++.... ++.++.+... -+|..++.+
T Consensus        95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence            2      11          12233 4578899999999999999999999999988544 5567666554 468899999


Q ss_pred             HcchhhhhHHHHHHHHHHHhhcCCCCCChhh-hhhHHHHHHHHhccC---C-hhHHHHHHHHHHHhccCCcHHHHHHHHh
Q 043116          164 LNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ-IRPALRVLAQLIRSN---D-EKVLTDACRALAYLADGTNDKIQAVIEA  238 (482)
Q Consensus       164 l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~ll~~~---~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~  238 (482)
                      + .+..+.++..++..|..++++.+..+..+ +++++..|..++...   | .-+...|+..|-|+..++..+...+.+.
T Consensus       175 L-~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~  253 (970)
T KOG0946|consen  175 L-RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREG  253 (970)
T ss_pred             H-hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcc
Confidence            9 67777888899999999999986665554 589999999999853   2 3578899999999999888888889999


Q ss_pred             CcHHHHHHhhCC---CC-----hh-----hHHHHHHHHhHhhcCC-h-----hhHHHHHhcCchHHHHHHhcCC-CchhH
Q 043116          239 GVCPRLVKLLGH---RS-----RL-----VLTAALRTIGNIVTGD-D-----FQTQCIINCGALRYLLGLLIHN-HNKSI  298 (482)
Q Consensus       239 ~~l~~L~~ll~~---~~-----~~-----v~~~a~~~L~~l~~~~-~-----~~~~~l~~~~~i~~L~~ll~~~-~~~~v  298 (482)
                      +.+++|.++|..   .+     +.     -...++.++..+..-. .     ...+.+...+++..|..++.++ -..++
T Consensus       254 ~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dI  333 (970)
T KOG0946|consen  254 SYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADI  333 (970)
T ss_pred             ccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhH
Confidence            999999988753   22     11     2344566666666421 1     2234566788999999988877 36689


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcC----------ChHHHHHHHh-cCChhHHHHHHHHHHHhhcC
Q 043116          299 KKEVCWIISNITAGNREQIQAVIDAG----------LIGPIVNLLQ-DAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       299 ~~~a~~~L~nl~~~~~~~~~~l~~~~----------~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~  354 (482)
                      +.++.-++++.++++......+.+..          ++-.++.+.. ...+..|..+.+++..+...
T Consensus       334 ltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~d  400 (970)
T KOG0946|consen  334 LTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYD  400 (970)
T ss_pred             HHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHHhc
Confidence            99999999999998777666666421          1112333333 34677888888888888764

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.08  E-value=1.3e-08  Score=94.26  Aligned_cols=227  Identities=14%  Similarity=0.158  Sum_probs=161.8

Q ss_pred             hHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCChhhhh-------hHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116          157 LIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPFNQIR-------PALRVLAQLIRSNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       157 i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~~-------~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~  228 (482)
                      ...++.++... .+.++.++++..+..+....+........       .....++.++..+|..+...++..+..+....
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~  136 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQG  136 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcC
Confidence            55666777666 78899999999999999988744433321       24566777888999999999999999999776


Q ss_pred             cHHHHHHHHhCcHHHHHHhhCC----CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh------cCCCchhH
Q 043116          229 NDKIQAVIEAGVCPRLVKLLGH----RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL------IHNHNKSI  298 (482)
Q Consensus       229 ~~~~~~~~~~~~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll------~~~~~~~v  298 (482)
                      +....... .+.++.++.++.+    ++..++..++.++.++.. .+..+..+.+.++++.+..++      .+.....+
T Consensus       137 ~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  137 PKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            54433222 3556666666654    455677899999999986 777778899999999999999      44447788


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116          299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP  377 (482)
Q Consensus       299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  377 (482)
                      +.+++.++..++. +++....+.+.++++.|.++++. ....+.+-++.++.|++..........++..|+++.+..+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            9999999999976 46778888888899999999984 567899999999999998766658888888888777776665


Q ss_pred             --CCCHHHHHH
Q 043116          378 --CPDPQIVTV  386 (482)
Q Consensus       378 --~~~~~v~~~  386 (482)
                        .+|+++.+-
T Consensus       294 rk~~Dedl~ed  304 (312)
T PF03224_consen  294 RKWSDEDLTED  304 (312)
T ss_dssp             S--SSHHHHHH
T ss_pred             CCCCCHHHHHH
Confidence              467777654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.06  E-value=1.4e-08  Score=93.89  Aligned_cols=227  Identities=16%  Similarity=0.200  Sum_probs=158.2

Q ss_pred             hHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHH------hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          115 VPIFVKLLA--SPSDDVREQAVWALGNVAGDSSRCRDFVLS------QGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       115 i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      ...++.+++  +.++.+....+..+..+..+.+...+.+..      .....++++++ ..+|..+...++.++..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll-~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLL-DRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH--S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHc
Confidence            445555554  468889999999999999887766666555      23578888877 677899999999999999998


Q ss_pred             CCCCChhhhhhHHHHHHHHhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-----CC--CChhh
Q 043116          187 KPQPPFNQIRPALRVLAQLIRS----NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-----GH--RSRLV  255 (482)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-----~~--~~~~v  255 (482)
                      .+........+.++.+++.+.+    ++.+.+..++.+|.++... +.....+.+.++++.+..++     .+  ....+
T Consensus       136 ~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            8666655445666777666654    4566789999999999954 45667788899999999999     22  34578


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-HHHHHHHcCChHHHHHHHh
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE-QIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~L~~ll~  334 (482)
                      +..++.|++-++. +++....+.+.++++.+.++++.....++-+-+..++.|++...++ ....++..|+.+.+-.+..
T Consensus       215 ~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~  293 (312)
T PF03224_consen  215 QYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSE  293 (312)
T ss_dssp             HHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhc
Confidence            8999999999987 6666777888889999999999887889999999999999985443 5667777666555554443


Q ss_pred             --cCChhHHHHH
Q 043116          335 --DAEFGTKKEA  344 (482)
Q Consensus       335 --~~~~~~~~~a  344 (482)
                        -.|+++....
T Consensus       294 rk~~Dedl~edl  305 (312)
T PF03224_consen  294 RKWSDEDLTEDL  305 (312)
T ss_dssp             S--SSHHHHHHH
T ss_pred             CCCCCHHHHHHH
Confidence              2566666543

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.03  E-value=9.2e-07  Score=80.39  Aligned_cols=322  Identities=14%  Similarity=0.157  Sum_probs=210.2

Q ss_pred             ChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHH------HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          114 AVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVL------SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       114 ~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      .+..++.+++.. .++....++..+.-+...++.....+.      ..-.-...+.++ ...+.-+.....++++.++..
T Consensus        66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll-~r~d~~iv~~~~~Ils~la~~  144 (442)
T KOG2759|consen   66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLL-NRQDTFIVEMSFRILSKLACF  144 (442)
T ss_pred             HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHH-hcCChHHHHHHHHHHHHHHHh
Confidence            345556666532 234444455555544433332222111      112255677777 666677777799999999887


Q ss_pred             CCCCChh-hhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHH
Q 043116          187 KPQPPFN-QIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRT  262 (482)
Q Consensus       187 ~~~~~~~-~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~  262 (482)
                      .+..... ...-....+-..+++ .+++...-+++||..+...++.+ ..++...++..++..+.+  .+-.++...+.|
T Consensus       145 g~~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR-~~~v~adg~~~l~~~l~s~~~~~QlQYqsifc  223 (442)
T KOG2759|consen  145 GNCKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYR-YAFVIADGVSLLIRILASTKCGFQLQYQSIFC  223 (442)
T ss_pred             ccccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchh-heeeecCcchhhHHHHhccCcchhHHHHHHHH
Confidence            6433332 333445556666665 67888889999999999776644 445556666777777732  456789999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH------HHHHHHHHcCChHHHHHHHh--
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR------EQIQAVIDAGLIGPIVNLLQ--  334 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~------~~~~~l~~~~~i~~L~~ll~--  334 (482)
                      ++-|.. ++...+.+...+.++.|.+++++....+|-+-++.++.|++...+      +....++..++.+.+-.+-.  
T Consensus       224 iWlLtF-n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rk  302 (442)
T KOG2759|consen  224 IWLLTF-NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERK  302 (442)
T ss_pred             HHHhhc-CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcC
Confidence            999887 565567677779999999999988788899999999999998543      33345556555554444433  


Q ss_pred             cCChhHHHHHHH-------HHHHhhcCC--------------C--------HHHHHHHHHc--CChHHHHhcCCCCC-HH
Q 043116          335 DAEFGTKKEAAW-------VISNATSGG--------------T--------HEQIKHLVRE--GCVKPLCDLLPCPD-PQ  382 (482)
Q Consensus       335 ~~~~~~~~~a~~-------aL~~l~~~~--------------~--------~~~~~~l~~~--~~l~~L~~ll~~~~-~~  382 (482)
                      ..|+++....-.       -...++...              +        .+++..+.+.  .++..|+.+|+.++ |.
T Consensus       303 ysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~  382 (442)
T KOG2759|consen  303 YSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPI  382 (442)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCc
Confidence            234444332211       111222210              0        2334444444  35788888888654 66


Q ss_pred             HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      +...|+.-++.+.+.-+.            .+..+...||-+.+-+|+++++++|+..|...++++..
T Consensus       383 iL~VAc~DIge~Vr~yP~------------gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  383 ILCVACHDIGEYVRHYPE------------GKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             eeehhhhhHHHHHHhCch------------HhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            777777777777766544            37888999999999999999999999999999888754

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.02  E-value=1.2e-07  Score=92.43  Aligned_cols=341  Identities=16%  Similarity=0.158  Sum_probs=236.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .+|.++++....|-..+...-..+.+.+...+.      ...+.+++++.=..+++ +.+|.-|++.++.+--  +....
T Consensus        50 lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~------~a~~avnt~~kD~~d~n-p~iR~lAlrtm~~l~v--~~i~e  120 (734)
T KOG1061|consen   50 LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPD------LAILAVNTFLKDCEDPN-PLIRALALRTMGCLRV--DKITE  120 (734)
T ss_pred             hhHHHHhhcccCCchHHHHHHHHHHHhhccCch------HHHhhhhhhhccCCCCC-HHHHHHHhhceeeEee--hHHHH
Confidence            466777777777777777777777777776522      12346777787778888 8999988888877743  22222


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                           -...++.+.+++.++.+|..+..+..++-..++   +.+.+.|+++.|-.++ .+.++.+..+|+.+|..+....
T Consensus       121 -----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~---~~~~~~gl~~~L~~ll-~D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  121 -----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDP---DLVEDSGLVDALKDLL-SDSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             -----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCCh---hhccccchhHHHHHHh-cCCCchHHHHHHHHHHHHHHhC
Confidence                 246889999999999999999999998875543   4577888999999998 5888999999999999999987


Q ss_pred             CC-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116          188 PQ-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI  266 (482)
Q Consensus       188 ~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  266 (482)
                      +. .........+..++..+..-+.--+...+.++.+-...++....     .++..+...+.+.++.+...+...+.++
T Consensus       192 ~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~  266 (734)
T KOG1061|consen  192 PSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQL  266 (734)
T ss_pred             CCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHH
Confidence            64 34444466777777777766666777777777776655442222     3467888888898888888888888888


Q ss_pred             hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH-------------------------HH
Q 043116          267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA-------------------------VI  321 (482)
Q Consensus       267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~-------------------------l~  321 (482)
                      ......... .+-...-+.++.++.+. . +++..+..-+.-+....|+....                         +.
T Consensus       267 ~~~~~~~~~-~~~~K~~~pl~tlls~~-~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la  343 (734)
T KOG1061|consen  267 VKYLKQVNE-LLFKKVAPPLVTLLSSE-S-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELA  343 (734)
T ss_pred             HHHHHHHHH-HHHHHhcccceeeeccc-c-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHh
Confidence            765554322 33335666777777666 3 45544444443333333332110                         11


Q ss_pred             Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          322 DA----GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       322 ~~----~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..    .++..+...-..-|.+....+++|+++++.....       .++++..|.++++-.-..++..+...+..+++.
T Consensus       344 ~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~-------~~~cv~~lLell~~~~~yvvqE~~vvi~dilRk  416 (734)
T KOG1061|consen  344 NDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQ-------SNDCVSILLELLETKVDYVVQEAIVVIRDILRK  416 (734)
T ss_pred             hHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhh-------hhhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence            11    1233333333456888899999999999884322       167999999999977777777778888888887


Q ss_pred             chhc
Q 043116          398 GEAE  401 (482)
Q Consensus       398 ~~~~  401 (482)
                      .++.
T Consensus       417 yP~~  420 (734)
T KOG1061|consen  417 YPNK  420 (734)
T ss_pred             CCCc
Confidence            6654

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.01  E-value=2.9e-07  Score=86.35  Aligned_cols=359  Identities=12%  Similarity=0.058  Sum_probs=218.3

Q ss_pred             HHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116           32 MVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI  110 (482)
Q Consensus        32 l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  110 (482)
                      +++....+. ...+.+++.++.+++....++....+-+.-++......++.+.+..+|..|+.+|.+-+.   ..+..+-
T Consensus       138 mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~  214 (858)
T COG5215         138 MVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFC  214 (858)
T ss_pred             HHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhc
Confidence            333334333 577889999999998775221222222222334444556666557899999999887332   1111111


Q ss_pred             hC---C-ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          111 DH---G-AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       111 ~~---g-~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      ..   + ++...++.-+.++.+++..|..||..+-.-.-..-+..++.-......+.+ ++++.++...++...+.+|..
T Consensus       215 ~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~m-ks~nd~va~qavEfWsticeE  293 (858)
T COG5215         215 YEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFM-KSQNDEVAIQAVEFWSTICEE  293 (858)
T ss_pred             chhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHHHHHHHHHH
Confidence            11   1 235556677789999999999999988622211222333333333344444 677788888888888888875


Q ss_pred             CCCCCh-----------------hhhhhHHHHHHHHhcc-------CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116          187 KPQPPF-----------------NQIRPALRVLAQLIRS-------NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP  242 (482)
Q Consensus       187 ~~~~~~-----------------~~~~~~~~~L~~ll~~-------~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~  242 (482)
                      ......                 .....++|.++++|..       +++.+...+..||.-.++...+.   +++. ++.
T Consensus       294 eid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd~---i~~p-Vl~  369 (858)
T COG5215         294 EIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGDK---IMRP-VLG  369 (858)
T ss_pred             HhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhhH---hHHH-HHH
Confidence            421111                 1135689999999874       24667777777877666443322   2222 444


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID  322 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  322 (482)
                      .+-.-++++++.-+..+.-+++.+..+.......-+-...+|.+...+.++ .-.++..++|+++.++.+-+..+   -.
T Consensus       370 FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~-~l~vk~ttAwc~g~iad~va~~i---~p  445 (858)
T COG5215         370 FVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDS-CLWVKSTTAWCFGAIADHVAMII---SP  445 (858)
T ss_pred             HHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccc-eeehhhHHHHHHHHHHHHHHHhc---Cc
Confidence            455567888999999999999999987655544444456888888888877 88899999999999975433221   12


Q ss_pred             cCChHHHHH-HHh--cCChhHHHHHHHHHHHhhcCCCHHH--HHHHHHcCChHHHHhcCC-----CCCHHHHHHHHHHHH
Q 043116          323 AGLIGPIVN-LLQ--DAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKPLCDLLP-----CPDPQIVTVCLIGLE  392 (482)
Q Consensus       323 ~~~i~~L~~-ll~--~~~~~~~~~a~~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~-----~~~~~v~~~~l~~L~  392 (482)
                      .|-++..+. .+.  .+++.+..++.|...|++.+-.+-.  ...+.-.-....+-.+++     ..+...+.....+|.
T Consensus       446 ~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg  525 (858)
T COG5215         446 CGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG  525 (858)
T ss_pred             cccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            232332222 222  3577888999999999986432111  011111111122222222     344467888899999


Q ss_pred             HHHHhchhcc
Q 043116          393 NILKVGEAEK  402 (482)
Q Consensus       393 ~l~~~~~~~~  402 (482)
                      .++.+++...
T Consensus       526 tli~~~~d~V  535 (858)
T COG5215         526 TLILICPDAV  535 (858)
T ss_pred             HHHhhcchhH
Confidence            9998876643

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=9.6e-07  Score=86.31  Aligned_cols=251  Identities=14%  Similarity=0.149  Sum_probs=149.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      .|.+.++++..++.++.+|+.+...+.... ++..     +.+++....+|.+.+ .-|...++..+..+|..+++....
T Consensus       144 apeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~-----e~f~~~~~~lL~ek~-hGVL~~~l~l~~e~c~~~~~~l~~  216 (866)
T KOG1062|consen  144 APEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLV-----EHFVIAFRKLLCEKH-HGVLIAGLHLITELCKISPDALSY  216 (866)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHH-----HHhhHHHHHHHhhcC-CceeeeHHHHHHHHHhcCHHHHHH
Confidence            444555555555556555555555555443 1111     123444455555555 455555555555555555554444


Q ss_pred             HHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-----h
Q 043116          109 AIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-----A  168 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-----~  168 (482)
                      +.+  .++.|+..|+.               ++|-++...++.|+-+-.+++...+.+-+     .|-+...+.     .
T Consensus       217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~  289 (866)
T KOG1062|consen  217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA  289 (866)
T ss_pred             HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence            433  33444443321               34556666666666665555444333322     122222111     1


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh
Q 043116          169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL  248 (482)
Q Consensus       169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll  248 (482)
                      ...+...++.++..+-...     ....-++..|-++|.+.|..++.-++..|......++...+..     -..++.+|
T Consensus       290 GnAILYE~V~TI~~I~~~~-----~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL  359 (866)
T KOG1062|consen  290 GNAILYECVRTIMDIRSNS-----GLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECL  359 (866)
T ss_pred             hhHHHHHHHHHHHhccCCc-----hHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHh
Confidence            2344555555555444332     1223456667778888888888888888888887666544322     25788999


Q ss_pred             CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          249 GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       249 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      ++++..++..|+..+..|..  ....+     .++..|+.+|.+. ++++|...+.-+..++.
T Consensus       360 ~DpD~SIkrralELs~~lvn--~~Nv~-----~mv~eLl~fL~~~-d~~~k~~~as~I~~laE  414 (866)
T KOG1062|consen  360 KDPDVSIKRRALELSYALVN--ESNVR-----VMVKELLEFLESS-DEDFKADIASKIAELAE  414 (866)
T ss_pred             cCCcHHHHHHHHHHHHHHhc--cccHH-----HHHHHHHHHHHhc-cHHHHHHHHHHHHHHHH
Confidence            99999999999999988875  33333     2456799999999 99999999999999987

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=98.92  E-value=1.2e-06  Score=82.29  Aligned_cols=362  Identities=17%  Similarity=0.156  Sum_probs=217.6

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           29 LPTMVAGVWS--DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        29 i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +-.++..-.+  .+..+++.|+.+|.+-+..-+.-...+--.+-++...++.-+.++ .+++..|..||..+..-..++.
T Consensus       178 l~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d-~e~q~aafgCl~kim~LyY~fm  256 (858)
T COG5215         178 LFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGND-EELQHAAFGCLNKIMMLYYKFM  256 (858)
T ss_pred             HHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444332  346788889999987333210000011111223444556666777 8999999999999988777777


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH----------------HHHhCChHHHHHHHcc-hh-
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF----------------VLSQGALIPLLAELNE-HA-  168 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~----------------~~~~~~i~~l~~~l~~-~~-  168 (482)
                      +..++.-........+++++.++...++...+.+|.+.-...-.                -.-.+++|.++++|.+ ++ 
T Consensus       257 ~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed  336 (858)
T COG5215         257 QSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGED  336 (858)
T ss_pred             HHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCC
Confidence            77777666677778899999999999999998888432111000                0012368889999854 22 


Q ss_pred             ----hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH
Q 043116          169 ----KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRL  244 (482)
Q Consensus       169 ----~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L  244 (482)
                          +-.+-..|..||--.+...   ...+...++..+-+-++++++.-++.+..+++.+..+..+....-+-...++.+
T Consensus       337 ~~~DdWn~smaA~sCLqlfaq~~---gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i  413 (858)
T COG5215         337 YYGDDWNPSMAASSCLQLFAQLK---GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGI  413 (858)
T ss_pred             ccccccchhhhHHHHHHHHHHHh---hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHH
Confidence                1233334444444433321   122345566667777888999999999999999998766554444444678888


Q ss_pred             HHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc----hHH-HHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116          245 VKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA----LRY-LLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA  319 (482)
Q Consensus       245 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----i~~-L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  319 (482)
                      ...+.++.--++..++||++.++.+-+....   ..+-    +.. ++.+..   .+.+-...+|...|++.+-++..+.
T Consensus       414 ~n~m~D~~l~vk~ttAwc~g~iad~va~~i~---p~~Hl~~~vsa~liGl~D---~p~~~~ncsw~~~nlv~h~a~a~~~  487 (858)
T COG5215         414 ENEMSDSCLWVKSTTAWCFGAIADHVAMIIS---PCGHLVLEVSASLIGLMD---CPFRSINCSWRKENLVDHIAKAVRE  487 (858)
T ss_pred             HHhcccceeehhhHHHHHHHHHHHHHHHhcC---ccccccHHHHHHHhhhhc---cchHHhhhHHHHHhHHHhhhhhhcc
Confidence            8888888888999999999999875443221   1222    222 223222   4577788999999998754433311


Q ss_pred             ---HHH---cCChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHHHHHHHHH---------cCChHHHHhcCCCCCH-
Q 043116          320 ---VID---AGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHEQIKHLVR---------EGCVKPLCDLLPCPDP-  381 (482)
Q Consensus       320 ---l~~---~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~---------~~~l~~L~~ll~~~~~-  381 (482)
                         ++.   ..++..|+..-.  ..+...|..+..+|+.+...++......+..         ..++..+.+.+..+|. 
T Consensus       488 ~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~  567 (858)
T COG5215         488 VESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQL  567 (858)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence               111   112333333322  3456788888999999887654333222111         0223333333333332 


Q ss_pred             ---HHHHHHHHHHHHHHHhchh
Q 043116          382 ---QIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       382 ---~v~~~~l~~L~~l~~~~~~  400 (482)
                         ++..+.+..|..+++..+.
T Consensus       568 ~~~elqSN~~~vl~aiir~~~~  589 (858)
T COG5215         568 LVEELQSNYIGVLEAIIRTRRR  589 (858)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC
Confidence               4666666666666654433

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.91  E-value=1.9e-06  Score=84.25  Aligned_cols=341  Identities=14%  Similarity=0.139  Sum_probs=167.2

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH--
Q 043116           75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL--  152 (482)
Q Consensus        75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~--  152 (482)
                      +.+=|++++ .-+.-.|+.+|++++.  ++....     +.|-+-++++..++.+|..|+-|...+....|...+.+.  
T Consensus       112 lknDL~s~n-q~vVglAL~alg~i~s--~Emard-----lapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~~  183 (866)
T KOG1062|consen  112 LKNDLNSSN-QYVVGLALCALGNICS--PEMARD-----LAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVIA  183 (866)
T ss_pred             HHhhccCCC-eeehHHHHHHhhccCC--HHHhHH-----hhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhHH
Confidence            344444555 4455555555555543  333332     234445555555555555555555555544443322211  


Q ss_pred             ------Hh--C----ChHHHHHHHcchhh-----hhHHHHHHHHHHHhhcCC--CCCChh-hhhhHHHH----HHHHhcc
Q 043116          153 ------SQ--G----ALIPLLAELNEHAK-----LSMLRTATWTLSNFCRGK--PQPPFN-QIRPALRV----LAQLIRS  208 (482)
Q Consensus       153 ------~~--~----~i~~l~~~l~~~~~-----~~~~~~a~~~L~~L~~~~--~~~~~~-~~~~~~~~----L~~ll~~  208 (482)
                            +.  |    .+..+..++..+.+     .+.....+.+|.++....  +.-+.. +...+++.    ++.+|..
T Consensus       184 ~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq  263 (866)
T KOG1062|consen  184 FRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQ  263 (866)
T ss_pred             HHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcC
Confidence                  11  1    12333333322111     123444555566666544  222111 11233332    3444556


Q ss_pred             CChhHHHHHHHHHHHhccCCcHHH--HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHH--------
Q 043116          209 NDEKVLTDACRALAYLADGTNDKI--QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCII--------  278 (482)
Q Consensus       209 ~~~~~~~~~l~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~--------  278 (482)
                      +|++........|..++.+.+...  ...+-...+..++.+  .++...+..|+.+|+.+..+.+...+++.        
T Consensus       264 ~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I--~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V  341 (866)
T KOG1062|consen  264 NDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDI--RSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVV  341 (866)
T ss_pred             CCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhh
Confidence            666666666666766664322111  000111111222221  13334555555555555444333322221        


Q ss_pred             --hcCc----hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116          279 --NCGA----LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT  352 (482)
Q Consensus       279 --~~~~----i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~  352 (482)
                        +..+    =..+++.|+++ |..+|+.|...+-.+...  .++..     ++..|+++|...+++.+..++.-+..++
T Consensus       342 ~~d~~avqrHr~tIleCL~Dp-D~SIkrralELs~~lvn~--~Nv~~-----mv~eLl~fL~~~d~~~k~~~as~I~~la  413 (866)
T KOG1062|consen  342 QQDPTAVQRHRSTILECLKDP-DVSIKRRALELSYALVNE--SNVRV-----MVKELLEFLESSDEDFKADIASKIAELA  413 (866)
T ss_pred             cCCcHHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHhcc--ccHHH-----HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence              0011    13477788888 888998888877777642  22332     5667888999889999999999999998


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC
Q 043116          353 SGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH  432 (482)
Q Consensus       353 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~  432 (482)
                      ..-.|+...+      ++.+...++..-.-|...+...+..++..+..+...   +....+...+.+.+       ++.-
T Consensus       414 EkfaP~k~W~------idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~---y~~~rLy~a~~~~~-------~~~i  477 (866)
T KOG1062|consen  414 EKFAPDKRWH------IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHE---YAVLRLYLALSEDT-------LLDI  477 (866)
T ss_pred             HhcCCcchhH------HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhh---HHHHHHHHHHhhhh-------hhhh
Confidence            7666655444      555556665544444444444444444333111100   11111111111111       2334


Q ss_pred             CCHHHHHHHHHHHHHhc
Q 043116          433 DNNDIHEMSVKILETYW  449 (482)
Q Consensus       433 ~~~~v~~~a~~~l~~~~  449 (482)
                      +.+.+.+.|.|+|-.|-
T Consensus       478 s~e~l~qVa~W~IGEYG  494 (866)
T KOG1062|consen  478 SQEPLLQVASWCIGEYG  494 (866)
T ss_pred             hhhhHHHHHHHHhhhhh
Confidence            45666888999998876

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.89  E-value=1.5e-07  Score=94.09  Aligned_cols=271  Identities=17%  Similarity=0.193  Sum_probs=206.2

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116           40 DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV  119 (482)
Q Consensus        40 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  119 (482)
                      -..-|+.|........+..+.++.       -+|.+++.|-++-   =|..|+..|+....-.+-....-+.-|++|..+
T Consensus       449 FFteQLTAFevWLd~gse~r~PPe-------QLPiVLQVLLSQv---HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVL  518 (1387)
T KOG1517|consen  449 FFTEQLTAFEVWLDYGSESRTPPE-------QLPIVLQVLLSQV---HRLRALVLLARFLDLGPWAVDLALSVGIFPYVL  518 (1387)
T ss_pred             hHHHHHHHHHHHHHhccccCCChH-------hcchHHHHHHHHH---HHHHHHHHHHHHhccchhhhhhhhccchHHHHH
Confidence            346677788888777776644443       3677777765443   267788999999887888888888999999999


Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh--hhhHHHHHHHHHHHhhcCCCCCChhhh-h
Q 043116          120 KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA--KLSMLRTATWTLSNFCRGKPQPPFNQI-R  196 (482)
Q Consensus       120 ~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~~a~~~L~~L~~~~~~~~~~~~-~  196 (482)
                      ++|+++-.++|..-+.+...|..-++.++..+++.++-..+++.+..+.  +++-+..++++|+.++.+-+..+.... .
T Consensus       519 KLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~  598 (1387)
T KOG1517|consen  519 KLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNG  598 (1387)
T ss_pred             HHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccc
Confidence            9999999999998888888888777889888888888888888884422  346677799999999998655444444 5


Q ss_pred             hHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Ch
Q 043116          197 PALRVLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DD  271 (482)
Q Consensus       197 ~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~  271 (482)
                      +++...+..++++ .+-.+..++-||+.|-++.++..=.-.+.+..+.|..+|+++-++||..|+.+|+.+...    .+
T Consensus       599 ~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fd  678 (1387)
T KOG1517|consen  599 NLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFD  678 (1387)
T ss_pred             cHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccc
Confidence            7788888888875 688899999999999987765544445567889999999999999999999999999875    22


Q ss_pred             hhHHHH------------HhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116          272 FQTQCI------------INCGAL---RYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI  321 (482)
Q Consensus       272 ~~~~~l------------~~~~~i---~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  321 (482)
                      +....+            ++..+.   -.++.+++.+ .+-++.+.+-++..++.+.........
T Consensus       679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDG-SPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            222211            222222   2567777888 899999999999999886555444333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.89  E-value=1.8e-07  Score=87.67  Aligned_cols=323  Identities=15%  Similarity=0.083  Sum_probs=203.9

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116           67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR  146 (482)
Q Consensus        67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  146 (482)
                      ...+++++++..+.+++ ..+|..|+..+.|++... ...-...-..+...+.++..+.+..++. +...+-.+..+-..
T Consensus        81 Y~~~iv~Pv~~cf~D~d-~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~-~aeLLdRLikdIVt  157 (675)
T KOG0212|consen   81 YLEKIVPPVLNCFSDQD-SQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRG-GAELLDRLIKDIVT  157 (675)
T ss_pred             HHHHhhHHHHHhccCcc-ceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCcccccc-HHHHHHHHHHHhcc
Confidence            45678899999999999 799999999999998721 1111112224567778888877777765 33344333211100


Q ss_pred             hHH-HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          147 CRD-FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       147 ~~~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      -+. .+.-.+++|.+-..+ ...++..+...+.-+..|-...+..-......+++-|..+|.++.++++..+=.++.++.
T Consensus       158 e~~~tFsL~~~ipLL~eri-y~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  158 ESASTFSLPEFIPLLRERI-YVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccccCHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            000 111112344444444 344666666666556555544332233344788999999999999999977777666554


Q ss_pred             c---CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHH
Q 043116          226 D---GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEV  302 (482)
Q Consensus       226 ~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a  302 (482)
                      .   .++..   +--...++.++..+.++++.++..|+.-|..+..-.+.. -...-+|++..++..+.+.+...++..+
T Consensus       237 ~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a  312 (675)
T KOG0212|consen  237 AEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYA  312 (675)
T ss_pred             HHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHH
Confidence            2   22221   111256788999999999999999988888877644433 2234457788888888877333344443


Q ss_pred             HHHHHHHhc--CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 043116          303 CWIISNITA--GNREQIQAVID-AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP  379 (482)
Q Consensus       303 ~~~L~nl~~--~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  379 (482)
                      ...-..+..  +.+...+. ++ ..+++.+.+.+.++..+.|..++.-+..+-.....+.  ..-.......|..-++++
T Consensus       313 ~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql--~~h~~~if~tLL~tLsd~  389 (675)
T KOG0212|consen  313 QMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQL--LVHNDSIFLTLLKTLSDR  389 (675)
T ss_pred             HHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchh--hhhccHHHHHHHHhhcCc
Confidence            332222222  22221222 32 2367788888889999999999888888876533222  223446788899999999


Q ss_pred             CHHHHHHHHHHHHHHHHhchh
Q 043116          380 DPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       380 ~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +.+|+..++..+..++.....
T Consensus       390 sd~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  390 SDEVVLLALSLLASICSSSNS  410 (675)
T ss_pred             hhHHHHHHHHHHHHHhcCccc
Confidence            999999999999999865433

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.89  E-value=3.3e-08  Score=93.25  Aligned_cols=266  Identities=17%  Similarity=0.123  Sum_probs=171.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC-
Q 043116          114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP-  190 (482)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-  190 (482)
                      ++..++..|++..+.+|..|+...+.++.--..|  ...+...|.  .|..-+ ....+++.-..+.++..+....... 
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l-ge~ypEvLgsil~Ai~~I~sv~~~~~  681 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL-GEDYPEVLGSILKAICSIYSVHRFRS  681 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc-CcccHHHHHHHHHHHHHHhhhhcccc
Confidence            5677888999999999999999988886211111  111222221  233334 4556777777777776666543222 


Q ss_pred             ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 043116          191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD  270 (482)
Q Consensus       191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  270 (482)
                      -..-..+++|.+..+|++....+..+.+..++.++...++....--=..+.--|+..|.+.+.++|.+|..+++.++..-
T Consensus       682 mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~ai  761 (975)
T COG5181         682 MQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISRAI  761 (975)
T ss_pred             cCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhc
Confidence            11234799999999999999999999999999999877754321111123345777888889999999999999888633


Q ss_pred             hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116          271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN  350 (482)
Q Consensus       271 ~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~  350 (482)
                      ..+       .++..|+.-|+.. +...|.-...+++-.+..       .....++|.|+.=...++..++.-++.+++.
T Consensus       762 GPq-------dvL~~LlnnLkvq-eRq~RvctsvaI~iVae~-------cgpfsVlP~lm~dY~TPe~nVQnGvLkam~f  826 (975)
T COG5181         762 GPQ-------DVLDILLNNLKVQ-ERQQRVCTSVAISIVAEY-------CGPFSVLPTLMSDYETPEANVQNGVLKAMCF  826 (975)
T ss_pred             CHH-------HHHHHHHhcchHH-HHHhhhhhhhhhhhhHhh-------cCchhhHHHHHhcccCchhHHHHhHHHHHHH
Confidence            322       3445566666554 333333333333333221       1112367777766667788899999999998


Q ss_pred             hhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116          351 ATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE  399 (482)
Q Consensus       351 l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~  399 (482)
                      +..........++..  ..+.|.+.+.+.|+--+..+...+..+.-.+.
T Consensus       827 mFeyig~~s~dYvy~--itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         827 MFEYIGQASLDYVYS--ITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             HHHHHHHHHHHHHHH--hhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            877544444445444  67778888888888777777777777664433

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=3.9e-05  Score=67.66  Aligned_cols=367  Identities=14%  Similarity=0.142  Sum_probs=240.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc---HHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP---IEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .|.|-..|..++..++..++..+..+....+...   +..+++.|+++.++..+-.++ .++...|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgged-deVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGED-DEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCc-HHHHHHHHHHHHHHHh-cHHH
Confidence            4445555667888899989888888877642112   344458999999999999999 8999999999999988 7777


Q ss_pred             HHHHHhCCChHHHH--HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          106 TKVAIDHGAVPIFV--KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       106 ~~~~~~~g~i~~L~--~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      ...+++......+-  .+-..-+.-+|......+..+..-++.....+..+|.+..|..-+....|.-++.++......|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            78888877765442  2333345667777888888898888888888899999999999996667888888888888888


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhcc--CChhHHHHHHHHHHHhccCCc---HHHHHHHHh--CcHHHHHHhhCCCChhhH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRS--NDEKVLTDACRALAYLADGTN---DKIQAVIEA--GVCPRLVKLLGHRSRLVL  256 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~--~~~~~~~~~l~~L~~l~~~~~---~~~~~~~~~--~~l~~L~~ll~~~~~~v~  256 (482)
                      ........+..-.++++.+..++..  .+|--.-.++...+.+.....   -.-+.+++.  -+++....++...++..+
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdai  321 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAI  321 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHH
Confidence            8776666666678999999999874  344334334444443332110   001112221  234455566677888999


Q ss_pred             HHHHHHHhHhhcCChhhHHHHHhcCc--hHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHH---------HHHH-
Q 043116          257 TAALRTIGNIVTGDDFQTQCIINCGA--LRYLLGLLIHNHNKSIKKEVCWIISNITA---GNREQI---------QAVI-  321 (482)
Q Consensus       257 ~~a~~~L~~l~~~~~~~~~~l~~~~~--i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~---------~~l~-  321 (482)
                      ..|+.+++.+....+. .+.+...|-  .+.++.-.-+.....-+..+..+|.+++.   -.++++         ..++ 
T Consensus       322 eaAiDalGilGSnteG-adlllkTgppaaehllarafdqnahakqeaaihaLaaIagelrlkpeqitDgkaeerlrclif  400 (524)
T KOG4413|consen  322 EAAIDALGILGSNTEG-ADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELRLKPEQITDGKAEERLRCLIF  400 (524)
T ss_pred             HHHHHHHHhccCCcch-hHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccccCChhhccccHHHHHHHHHHH
Confidence            9999999988764433 344444432  23333222222122344566777888775   122221         1111 


Q ss_pred             H-------cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHH-HcCChHHHHhcCCCCC---HHHHHHHHHH
Q 043116          322 D-------AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV-REGCVKPLCDLLPCPD---PQIVTVCLIG  390 (482)
Q Consensus       322 ~-------~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~-~~~~l~~L~~ll~~~~---~~v~~~~l~~  390 (482)
                      +       -.-...+..+++.+.++++..+...+..++.  .|-..+.+. ..++++...+.-...+   .+.+..++++
T Consensus       401 daaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa--qPWalkeifakeefieiVtDastEhaKaakdAkYeccKA  478 (524)
T KOG4413|consen  401 DAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA--QPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKA  478 (524)
T ss_pred             HHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc--CcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHH
Confidence            1       1235556667777889999999999999987  444444433 4576666665443322   2456667777


Q ss_pred             HHHHHHhchh
Q 043116          391 LENILKVGEA  400 (482)
Q Consensus       391 L~~l~~~~~~  400 (482)
                      +.+-+...+.
T Consensus       479 iaeaflcaef  488 (524)
T KOG4413|consen  479 IAEAFLCAEF  488 (524)
T ss_pred             HHHHHHHHHH
Confidence            7766654333

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.86  E-value=3.9e-08  Score=91.40  Aligned_cols=306  Identities=14%  Similarity=0.093  Sum_probs=198.6

Q ss_pred             HHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCC
Q 043116          132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSND  210 (482)
Q Consensus       132 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~  210 (482)
                      +++.+|..+++.....|.-+.+..+.+.|++.| ++++..+..-+...++|+.-.- +-.......+++..++.++.+.|
T Consensus       408 a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~L-s~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKD  486 (743)
T COG5369         408 AIVLFLKSMSRSVTFLRTGLLDYPIVELLIDAL-SNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKD  486 (743)
T ss_pred             HHHHHHHHhhHHHHHHHhhccccchHHHHHHHh-cCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcch
Confidence            444555666655555677777888899999999 5565555566777777777654 33444455799999999999999


Q ss_pred             hhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh---hHHHHHhc----Cc
Q 043116          211 EKVLTDACRALAYLADGTNDKIQ-AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF---QTQCIINC----GA  282 (482)
Q Consensus       211 ~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~----~~  282 (482)
                      ...+....|.++.+..+.++..+ .....-.+..++.+..++...++..++.++.|+.++...   ....+++.    -+
T Consensus       487 daLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~yl  566 (743)
T COG5369         487 DALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYL  566 (743)
T ss_pred             hhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHH
Confidence            99999999999999866553322 244445678999999999999999999999999884332   22222221    24


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcC-----------ChhHHHHHHHHHHH
Q 043116          283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-DAGLIGPIVNLLQDA-----------EFGTKKEAAWVISN  350 (482)
Q Consensus       283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~-----------~~~~~~~a~~aL~~  350 (482)
                      .+.+++.++.. +|-.-...++.|.+++..+.+..+.+. +..++..+..++...           ...+-........+
T Consensus       567 fk~l~~k~e~~-np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~v~  645 (743)
T COG5369         567 FKRLIDKYEEN-NPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTIVN  645 (743)
T ss_pred             HHHHHHHHHhc-CchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceeeec
Confidence            56778888888 777777889999999986555444444 345666666665421           11122222223333


Q ss_pred             hhcCCCHHHHHHHHHcCCh--HHHHhc---CCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHH
Q 043116          351 ATSGGTHEQIKHLVREGCV--KPLCDL---LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK  425 (482)
Q Consensus       351 l~~~~~~~~~~~l~~~~~l--~~L~~l---l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (482)
                      +..+++. .     +.+..  +.+-.+   -..++.++.....|...++....+..+..   +.....++.+.+.|.-+.
T Consensus       646 l~e~~d~-f-----~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vt---ratveR~~iL~~~G~~e~  716 (743)
T COG5369         646 LSENSDK-F-----KRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVT---RATVERIQILCANGIREW  716 (743)
T ss_pred             ccccccc-c-----ccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccc---hhhHHHHHHHHHccHHHH
Confidence            3332111 1     11111  122111   12344456666667666655443332211   223346778889999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHh
Q 043116          426 IENLQSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       426 l~~l~~~~~~~v~~~a~~~l~~~  448 (482)
                      ++.++.++++.|++++-.+++.+
T Consensus       717 l~k~q~~~Sl~vrek~~taL~~l  739 (743)
T COG5369         717 LVKIQAKDSLIVREKIGTALENL  739 (743)
T ss_pred             HHHHhccCcHHHHHHHHHHHHhh
Confidence            99999999999999999988754

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.1e-06  Score=82.57  Aligned_cols=217  Identities=18%  Similarity=0.183  Sum_probs=120.3

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV  151 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  151 (482)
                      +.++.+-|++++ +.+|..|+++|..|--  +     ++.-=++-++-++..+..+.+|..|+.+|-.+-.-+++.+..+
T Consensus       110 IntfQk~L~DpN-~LiRasALRvlSsIRv--p-----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k~qL  181 (968)
T KOG1060|consen  110 INTFQKALKDPN-QLIRASALRVLSSIRV--P-----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQKDQL  181 (968)
T ss_pred             HHHHHhhhcCCc-HHHHHHHHHHHHhcch--h-----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhHHHH
Confidence            455556666666 6666666666655532  1     1100112333445556667777777777776665544443322


Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC---C
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG---T  228 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~---~  228 (482)
                      .      .++..|..+.++-+.-.|+.++-.+|-+.    ...+.+-...++.++.+-+.--+..++..|..-+.+   +
T Consensus       182 ~------e~I~~LLaD~splVvgsAv~AF~evCPer----ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~  251 (968)
T KOG1060|consen  182 E------EVIKKLLADRSPLVVGSAVMAFEEVCPER----LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPD  251 (968)
T ss_pred             H------HHHHHHhcCCCCcchhHHHHHHHHhchhH----HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCC
Confidence            2      23333336666777777777777777542    334455566677776655544455555555544421   0


Q ss_pred             cHHH----------------------HHHHHh---CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCch
Q 043116          229 NDKI----------------------QAVIEA---GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGAL  283 (482)
Q Consensus       229 ~~~~----------------------~~~~~~---~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i  283 (482)
                      +...                      ....+.   -+++..-.++.+.++.+...++++...++-.+..       .+++
T Consensus       252 P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~~-------~~i~  324 (968)
T KOG1060|consen  252 PTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQV-------TKIA  324 (968)
T ss_pred             ccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHHH-------HHHH
Confidence            0000                      000000   1234444567778889999999999998853321       2467


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 043116          284 RYLLGLLIHNHNKSIKKEVCWIISNITAGNRE  315 (482)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  315 (482)
                      +.|+.+|++.  ..+|......+..++...+.
T Consensus       325 kaLvrLLrs~--~~vqyvvL~nIa~~s~~~~~  354 (968)
T KOG1060|consen  325 KALVRLLRSN--REVQYVVLQNIATISIKRPT  354 (968)
T ss_pred             HHHHHHHhcC--CcchhhhHHHHHHHHhcchh
Confidence            7888888765  45676666666666654444

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=98.85  E-value=4.8e-06  Score=80.76  Aligned_cols=389  Identities=13%  Similarity=0.123  Sum_probs=233.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-------CChHHHHHHHHHHHHHhC
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-------DYPQLQFEAARALTNIAS  100 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-------~~~~v~~~a~~~L~~l~~  100 (482)
                      .+-.+++-.+++|.+.+.-.+..+..++...+-  ....+..+++|.+.......       ++..+...+..+-..+  
T Consensus       637 vmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv--~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~Kv--  712 (1172)
T KOG0213|consen  637 VMLILIREFGSPDEEMKKIVLKVVKQCCATDGV--EPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKV--  712 (1172)
T ss_pred             HHHHHHHhhCCChHHHHHHHHHHHHHHhcccCC--CHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHh--
Confidence            356677778899999999999999999887532  33445666777776654322       2222222222222222  


Q ss_pred             CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHHhCChHHHHHHHcc-hhhhhHHHHHH
Q 043116          101 GTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS--RCRDFVLSQGALIPLLAELNE-HAKLSMLRTAT  177 (482)
Q Consensus       101 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~  177 (482)
                               .....+..++.-++++++..|..++.++..+...-+  ..-..+ +...+..++..+.. +.+..+.-...
T Consensus       713 ---------G~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderl-eE~lidgil~Afqeqtt~d~vml~gf  782 (1172)
T KOG0213|consen  713 ---------GSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERL-EERLIDGILYAFQEQTTEDSVMLLGF  782 (1172)
T ss_pred             ---------CchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHH-HHHHHHHHHHHHHhcccchhhhhhhH
Confidence                     122345666666778888888877777776653221  111111 22234555555532 22333444444


Q ss_pred             HHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHH--HHHHHHhCcHHHHHHhhCCCChhh
Q 043116          178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK--IQAVIEAGVCPRLVKLLGHRSRLV  255 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~v  255 (482)
                      .+..+-...   ........++..++..|++..+.++..++..++.++..-...  .+.+...|  -.|...|....+++
T Consensus       783 g~V~~~lg~---r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lG--vvLyEylgeeypEv  857 (1172)
T KOG0213|consen  783 GTVVNALGG---RVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLG--VVLYEYLGEEYPEV  857 (1172)
T ss_pred             HHHHHHHhh---ccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhh--HHHHHhcCcccHHH
Confidence            444443322   223344667778888999999999999999999887321111  11122223  35677788888888


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHH--HHHHHcCChHHHHHHH
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI--QAVIDAGLIGPIVNLL  333 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~--~~l~~~~~i~~L~~ll  333 (482)
                      .-..+.+|..+.....-....---.+++|.|..+|++. +.+|+..+...++.++...++.+  +..+.  +--.|+++|
T Consensus       858 LgsILgAikaI~nvigm~km~pPi~dllPrltPILknr-heKVqen~IdLvg~IadrgpE~v~aREWMR--IcfeLlelL  934 (1172)
T KOG0213|consen  858 LGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR-HEKVQENCIDLVGTIADRGPEYVSAREWMR--ICFELLELL  934 (1172)
T ss_pred             HHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh-HHHHHHHHHHHHHHHHhcCcccCCHHHHHH--HHHHHHHHH
Confidence            88777777666542211000001137899999999999 99999999999999997545532  12222  344577888


Q ss_pred             hcCChhHHHHHHHHHHHhhcCCCHHH-HHHHH----------------------H-c---CChHHHHhcCCCCCHHHHHH
Q 043116          334 QDAEFGTKKEAAWVISNATSGGTHEQ-IKHLV----------------------R-E---GCVKPLCDLLPCPDPQIVTV  386 (482)
Q Consensus       334 ~~~~~~~~~~a~~aL~~l~~~~~~~~-~~~l~----------------------~-~---~~l~~L~~ll~~~~~~v~~~  386 (482)
                      .+.+.+++.+|...++.++..-.|.. ...+.                      + .   .+++.|+.--..++-.|+.-
T Consensus       935 kahkK~iRRaa~nTfG~IakaIGPqdVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen  935 KAHKKEIRRAAVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred             HHHHHHHHHHHHhhhhHHHHhcCHHHHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence            88889999999999998876432222 11111                      1 1   23555555555677788988


Q ss_pred             HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       387 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      +++++.-+|++.....+        .|.-.+     ...|.+-+.+.+..=++.|..++.++.-+
T Consensus      1015 VLkalsf~Feyigemsk--------dYiyav-----~PlleDAlmDrD~vhRqta~~~I~Hl~Lg 1066 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSK--------DYIYAV-----TPLLEDALMDRDLVHRQTAMNVIKHLALG 1066 (1172)
T ss_pred             HHHHHHHHHHHHHHHhh--------hHHHHh-----hHHHHHhhccccHHHHHHHHHHHHHHhcC
Confidence            99999999887555322        122222     34555556666665566777777665443

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=7.7e-06  Score=78.33  Aligned_cols=343  Identities=15%  Similarity=0.113  Sum_probs=222.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      ++..++.-+..+. +.+|.....|+..+........    ...+.+-+.+++......-+..+.+.++.+..+..  -..
T Consensus        97 ~~~~~~~~~~tps-~~~q~~~~~~l~~~~~~~~~~~----~~~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~  169 (569)
T KOG1242|consen   97 IIEILLEELDTPS-KSVQRAVSTCLPPLVVLSKGLS----GEYVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IES  169 (569)
T ss_pred             HHHHHHHhcCCCc-HHHHHHHHHHhhhHHHHhhccC----HHHHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhh
Confidence            4566777777788 8999988888887754211111    11245677788888888888889999999986653  345


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTND  230 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~  230 (482)
                      +.+.+++..+...+.+......++.+..+....+..-........-..+|.++..+.+..+.++..+..+...+...-+.
T Consensus       170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~  249 (569)
T KOG1242|consen  170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA  249 (569)
T ss_pred             hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc
Confidence            56677888888888544443333334444433333322223334456677777777778888998888877766543221


Q ss_pred             -HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116          231 -KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI  309 (482)
Q Consensus       231 -~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl  309 (482)
                       ...     -+++.++.-+....+..+..++..++.++...+.+.. ..-..++|.+.+.|-+. ++++|+.+..++..+
T Consensus       250 ~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT-~~evr~a~~~~l~~~  322 (569)
T KOG1242|consen  250 YAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDT-KPEVRKAGIETLLKF  322 (569)
T ss_pred             chhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccC-CHHHHHHHHHHHHHH
Confidence             111     2344444444444778889999999999886666544 45568999999999999 999999999999999


Q ss_pred             hc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116          310 TA--GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG--THEQIKHLVREGCVKPLCDLLPCPDPQIVT  385 (482)
Q Consensus       310 ~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  385 (482)
                      +.  .+++ ++     .++|.|++.+.++...+. .+...|+.-....  ++.....     .++.|..-+...+..+.+
T Consensus       323 ~svidN~d-I~-----~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV~~V~~psLal-----mvpiL~R~l~eRst~~kr  390 (569)
T KOG1242|consen  323 GSVIDNPD-IQ-----KIIPTLLDALADPSCYTP-ECLDSLGATTFVAEVDAPSLAL-----MVPILKRGLAERSTSIKR  390 (569)
T ss_pred             HHhhccHH-HH-----HHHHHHHHHhcCcccchH-HHHHhhcceeeeeeecchhHHH-----HHHHHHHHHhhccchhhh
Confidence            87  3444 33     267788888876543332 2333333221110  1111111     355555566677778889


Q ss_pred             HHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       386 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      .+..++.|++...+..+.      ..+|...+     ++.+.....+..|+++..+.+.+.....
T Consensus       391 ~t~~IidNm~~LveDp~~------lapfl~~L-----lp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  391 KTAIIIDNMCKLVEDPKD------LAPFLPSL-----LPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             hHHHHHHHHHHhhcCHHH------HhhhHHHH-----hhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence            999999999887644321      23344444     6777888888899999888888844433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=4.2e-06  Score=84.04  Aligned_cols=308  Identities=13%  Similarity=0.194  Sum_probs=211.7

Q ss_pred             hhhhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043116           20 LNLQSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNI   98 (482)
Q Consensus        20 ~~~~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l   98 (482)
                      .+.++.++.++.++..+. ..++.++..|+..+..+...  .++...+.+.|.+..|+.+|.+.  |..|..++.+|..+
T Consensus      1764 gSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan--~~Cv~~~a~~~vL~~LL~lLHS~--PS~R~~vL~vLYAL 1839 (2235)
T KOG1789|consen 1764 GSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN--KECVTDLATCNVLTTLLTLLHSQ--PSMRARVLDVLYAL 1839 (2235)
T ss_pred             cchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc--cHHHHHHHhhhHHHHHHHHHhcC--hHHHHHHHHHHHHH
Confidence            455777888899999988 56789999999999887765  78899999999999999999776  57899999999999


Q ss_pred             hCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCC---hhhHHHHHH----------hCChHHHHHHH
Q 043116           99 ASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDS---SRCRDFVLS----------QGALIPLLAEL  164 (482)
Q Consensus        99 ~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~---~~~~~~~~~----------~~~i~~l~~~l  164 (482)
                      ++ +++......+.|++..+..++- +..+..|.++...++.+..+.   |..+-.++.          .+.-...+..+
T Consensus      1840 ~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~f 1918 (2235)
T KOG1789|consen 1840 SS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMF 1918 (2235)
T ss_pred             hc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHH
Confidence            88 8888888889999888887655 566888999999999997443   221111111          01123333333


Q ss_pred             cchh-hh------hHHHHHHHHHHHhhc----CC---CC--------------------------------------CCh
Q 043116          165 NEHA-KL------SMLRTATWTLSNFCR----GK---PQ--------------------------------------PPF  192 (482)
Q Consensus       165 ~~~~-~~------~~~~~a~~~L~~L~~----~~---~~--------------------------------------~~~  192 (482)
                      .... ++      ..+......+..+..    ..   +.                                      ...
T Consensus      1919 E~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk 1998 (2235)
T KOG1789|consen 1919 ESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPK 1998 (2235)
T ss_pred             hccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHH
Confidence            2211 11      122222222222221    00   11                                      111


Q ss_pred             hhhhhHHHHHHHHhccCChh--HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC
Q 043116          193 NQIRPALRVLAQLIRSNDEK--VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD  270 (482)
Q Consensus       193 ~~~~~~~~~L~~ll~~~~~~--~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  270 (482)
                      ....+++..+.+++..++++  .....-.++..+....+...+.+-..|.++.++..+...+..+-..|++.|..++. +
T Consensus      1999 ~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lse-n 2077 (2235)
T KOG1789|consen 1999 LFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSE-N 2077 (2235)
T ss_pred             HHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhh-c
Confidence            22356777777777755433  33333444555555666666666667999999999988887788999999999987 5


Q ss_pred             hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhc
Q 043116          271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQD  335 (482)
Q Consensus       271 ~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~  335 (482)
                      ....+.+.....+..++..+...  +....-|+.+|..+.. ...+.....++.|.+|.|+++|+.
T Consensus      2078 ~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2078 QFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             cHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence            55556666666677788777665  3344578888888876 455666778889999999999984

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.80  E-value=8.4e-07  Score=86.68  Aligned_cols=365  Identities=16%  Similarity=0.174  Sum_probs=199.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      ...+.++++.+++.++..++....++-..+    .+.....|+++.|-.++.+++ |.+...|+.+|..+...+++.-..
T Consensus       123 ~~Pl~~~l~d~~~yvRktaa~~vakl~~~~----~~~~~~~gl~~~L~~ll~D~~-p~VVAnAlaaL~eI~e~~~~~~~~  197 (734)
T KOG1061|consen  123 CDPLLKCLKDDDPYVRKTAAVCVAKLFDID----PDLVEDSGLVDALKDLLSDSN-PMVVANALAALSEIHESHPSVNLL  197 (734)
T ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhhcCC----hhhccccchhHHHHHHhcCCC-chHHHHHHHHHHHHHHhCCCCCcc
Confidence            566778888999999999998888886553    566778999999999999888 999999999999998755431111


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                      .+....+..++..+..-++=-+...+.++.+..-.++  ++..   .++..+...+ .+.+..+.-.+..++.++....+
T Consensus       198 ~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~--~ea~---~i~~r~~p~L-qh~n~avvlsavKv~l~~~~~~~  271 (734)
T KOG1061|consen  198 ELNPQLINKLLEALNECTEWGQIFILDCLAEYVPKDS--REAE---DICERLTPRL-QHANSAVVLSAVKVILQLVKYLK  271 (734)
T ss_pred             cccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCc--hhHH---HHHHHhhhhh-ccCCcceEeehHHHHHHHHHHHH
Confidence            1111122233333322222222222223333221111  0100   0111222222 22222222223333333222221


Q ss_pred             CCChhhhhhHHHHHHHHhccCChhHHHH------------------------------------HHHHHHHhccCCcHHH
Q 043116          189 QPPFNQIRPALRVLAQLIRSNDEKVLTD------------------------------------ACRALAYLADGTNDKI  232 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~------------------------------------~l~~L~~l~~~~~~~~  232 (482)
                      .........+-+.++.++.+.. +++.-                                    =+.++..++..  +..
T Consensus       272 ~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~--~nl  348 (734)
T KOG1061|consen  272 QVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAND--ANL  348 (734)
T ss_pred             HHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhH--hHH
Confidence            1111111222222222222222 23322                                    33333333311  111


Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116          233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG  312 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  312 (482)
                      .     .++.-+...-..-+.+....+++++++++..-++.      .+.++.++.+++.. -..+..+++..+..+.+.
T Consensus       349 ~-----qvl~El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~vvi~dilRk  416 (734)
T KOG1061|consen  349 A-----QVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAIVVIRDILRK  416 (734)
T ss_pred             H-----HHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehhHHHHhhhhc
Confidence            1     12333444444567788899999999998744432      57889999999977 445677888888888875


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHH
Q 043116          313 NREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL  391 (482)
Q Consensus       313 ~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L  391 (482)
                      .|.....     +++.+...+.+ ++|+.|..-+|.++.-+..-  +....     .++.+.+-..++...|+...+.+.
T Consensus       417 yP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i--~~a~e-----lL~~f~en~~dE~~~Vql~LLta~  484 (734)
T KOG1061|consen  417 YPNKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAERI--ENALE-----LLESFLENFKDETAEVQLELLTAA  484 (734)
T ss_pred             CCCchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhhcc--CcHHH-----HHHHHHhhcccchHHHHHHHHHHH
Confidence            5553322     33444444443 57889999999999887632  22222     455666666677778888888777


Q ss_pred             HHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh--hcCCCHHHHHHHHHHHHHh
Q 043116          392 ENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL--QSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l--~~~~~~~v~~~a~~~l~~~  448 (482)
                      .++|-..+...           .+++      +.+..+  +++++++++.++.....-+
T Consensus       485 ik~Fl~~p~~t-----------q~~l------~~vL~~~~~d~~~~dlrDr~l~Y~RlL  526 (734)
T KOG1061|consen  485 IKLFLKKPTET-----------QELL------QGVLPLATADTDNPDLRDRGLIYWRLL  526 (734)
T ss_pred             HHHHhcCCccH-----------HHHH------HHHHhhhhccccChhhhhhHHHHHHHh
Confidence            77765444321           1111      222222  5677889998887655433

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=2.9e-05  Score=78.35  Aligned_cols=329  Identities=15%  Similarity=0.164  Sum_probs=222.4

Q ss_pred             HHHHHHHHHHHHhcCCCCCcH----HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHH
Q 043116           43 VQLEATTLFRKMLSFDRNSPI----EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIF  118 (482)
Q Consensus        43 ~~~~a~~~L~~l~~~~~~~~~----~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L  118 (482)
                      -...++.+|.|+.+.+ ++..    .+..--|.++.+..++.....+.++..|+.++..+.. +.++...+...|.+..|
T Consensus      1741 ~v~m~LtAL~Nli~~n-PdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~L 1818 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSAN-PDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTL 1818 (2235)
T ss_pred             HHHHHHHHHHHHHhhC-cchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHH
Confidence            4457899999999886 3221    2223357788888888766658999999999988876 78888999999999999


Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC---CCCChhhh
Q 043116          119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK---PQPPFNQI  195 (482)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~  195 (482)
                      +.+|.+ -|..|+.++.+|..++.. +.......+.|++..+..++-.+...+.+..++..+..+..+.   |......+
T Consensus      1819 L~lLHS-~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~ 1896 (2235)
T KOG1789|consen 1819 LTLLHS-QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLI 1896 (2235)
T ss_pred             HHHHhc-ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehH
Confidence            999985 467899999999999855 4455666788999999988877778888999999999999876   33333322


Q ss_pred             hhHH-----------HHHHHHhcc--CChh------HHHHHHHHHHHhcc--------CC------cHH-----------
Q 043116          196 RPAL-----------RVLAQLIRS--NDEK------VLTDACRALAYLAD--------GT------NDK-----------  231 (482)
Q Consensus       196 ~~~~-----------~~L~~ll~~--~~~~------~~~~~l~~L~~l~~--------~~------~~~-----------  231 (482)
                      ..+-           ...++++..  ++|+      .+...-..+..+..        ++      +++           
T Consensus      1897 kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~ 1976 (2235)
T KOG1789|consen 1897 KFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKEC 1976 (2235)
T ss_pred             HhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCc
Confidence            2222           223334331  2222      22222223332221        00      000           


Q ss_pred             -------HHHHH------------HhCcHHHHHHhhCCCChh--hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh
Q 043116          232 -------IQAVI------------EAGVCPRLVKLLGHRSRL--VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL  290 (482)
Q Consensus       232 -------~~~~~------------~~~~l~~L~~ll~~~~~~--v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  290 (482)
                             ...+.            -.+.++.+..+|..++++  ....-..++..+.+..+.....+-..|.+|.++..+
T Consensus      1977 aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am 2056 (2235)
T KOG1789|consen 1977 AVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAM 2056 (2235)
T ss_pred             ccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHH
Confidence                   00011            123455666666544332  222223334445556677667677779999999999


Q ss_pred             cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChH
Q 043116          291 IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK  370 (482)
Q Consensus       291 ~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~  370 (482)
                      .+. +..+-+.|...|..++. +.-....+.....+..++..+... +...--|+.+|..+......+........|.++
T Consensus      2057 ~~~-n~s~P~SaiRVlH~Lse-n~~C~~AMA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvp 2133 (2235)
T KOG1789|consen 2057 CLQ-NTSAPRSAIRVLHELSE-NQFCCDAMAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVP 2133 (2235)
T ss_pred             Hhc-CCcCcHHHHHHHHHHhh-ccHHHHHHhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHH
Confidence            887 66677889999999976 345556666666777777777643 445557899999998876667777778889999


Q ss_pred             HHHhcCCC
Q 043116          371 PLCDLLPC  378 (482)
Q Consensus       371 ~L~~ll~~  378 (482)
                      .|+++++.
T Consensus      2134 yLL~LLd~ 2141 (2235)
T KOG1789|consen 2134 YLLQLLDS 2141 (2235)
T ss_pred             HHHHHhcc
Confidence            99999974

>PF05536 Neurochondrin: Neurochondrin

Probab=98.79  E-value=2.6e-05  Score=77.14  Aligned_cols=384  Identities=15%  Similarity=0.107  Sum_probs=234.9

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc--HHHHHhcCCHHHHHHhhcCCC------ChHHHHHHHHHHHHH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP--IEKVIQSGVVPRFVEFLMRED------YPQLQFEAARALTNI   98 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~--~~~~~~~g~~~~L~~ll~~~~------~~~v~~~a~~~L~~l   98 (482)
                      ..+..-+++|++.+..-++.++..+.++....+...  .+.+.+.-+.+.+-++|.++.      ....+.-|+.+|..+
T Consensus         5 ~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    5 ASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            356778889998887778889999999998753212  335677777888889998732      156788899999999


Q ss_pred             hCCChHhHHHHHhCCChHHHHHhhCCCCH-HHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116           99 ASGTSENTKVAIDHGAVPIFVKLLASPSD-DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT  177 (482)
Q Consensus        99 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  177 (482)
                      |. .|+....---.+-||.|++.+...+. ++...|..+|..++ ..+..++.+.+.|.++.++..+.+  .+.....++
T Consensus        85 ~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~--~~~~~E~Al  160 (543)
T PF05536_consen   85 CR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPN--QSFQMEIAL  160 (543)
T ss_pred             cC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHh--CcchHHHHH
Confidence            98 56654222222568999999987666 89999999999999 556778899999999999999954  455677788


Q ss_pred             HHHHHhhcCCCCC----ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHH-HHHHHH----hCcHHHHHHhh
Q 043116          178 WTLSNFCRGKPQP----PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK-IQAVIE----AGVCPRLVKLL  248 (482)
Q Consensus       178 ~~L~~L~~~~~~~----~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~----~~~l~~L~~ll  248 (482)
                      .++.+++......    .......+++.+...+.......+..++..|..+....+.. ......    ..+...+..++
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL  240 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDIL  240 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHH
Confidence            8888887764321    22233466777777777777777888888888877555311 111111    22344455556


Q ss_pred             CC-CChhhHHHHHHHHhHhhcCChh-------------hHHHHHhcC------chHHHHHHhcCCCchhHH--HHHHH-H
Q 043116          249 GH-RSRLVLTAALRTIGNIVTGDDF-------------QTQCIINCG------ALRYLLGLLIHNHNKSIK--KEVCW-I  305 (482)
Q Consensus       249 ~~-~~~~v~~~a~~~L~~l~~~~~~-------------~~~~l~~~~------~i~~L~~ll~~~~~~~v~--~~a~~-~  305 (482)
                      ++ ..+.-|..++...+.+......             ....+++.-      .++.+....+.+......  -.+|+ +
T Consensus       241 ~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~~~~~~F~~Llv~l~~VEir~~L~~L~~~~~~~~~~~~~~~L~~cf~i  320 (543)
T PF05536_consen  241 QSRLTPSQRDPALNLAASLLDLLGPEWLFADDKKSGKKFLLLLVNLACVEIRMSLEELLEQLNPEEYPEKQRLLASCFSI  320 (543)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCCCCcccHHHHHHHHHHHHHHHHhHHhhhcCCchhhHHHHHHHHHHHHH
Confidence            55 3456676676666666542111             111111110      111111111211111111  11222 1


Q ss_pred             H----HHHhc--------CCHHHHHHHHH--cCChHHHHHHHhc------CChhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043116          306 I----SNITA--------GNREQIQAVID--AGLIGPIVNLLQD------AEFGTKKEAAWVISNATSGGTHEQIKHLVR  365 (482)
Q Consensus       306 L----~nl~~--------~~~~~~~~l~~--~~~i~~L~~ll~~------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~  365 (482)
                      +    ..++.        -.++....+..  .+.+...+++|++      .++.....++++|+....-.+....+.+  
T Consensus       321 lE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d~~~vlAsvR~L~~WLaEe~~~lr~~v--  398 (543)
T PF05536_consen  321 LEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKDPDFVLASVRVLGAWLAEETSALRKEV--  398 (543)
T ss_pred             HHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhChHHHHHHH--
Confidence            1    11121        12344444443  4567777777763      2334677788999988875444333333  


Q ss_pred             cCChHHHHhcCCCCCH----------HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh
Q 043116          366 EGCVKPLCDLLPCPDP----------QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL  429 (482)
Q Consensus       366 ~~~l~~L~~ll~~~~~----------~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  429 (482)
                      .|.++.++++..+...          +.+...+-+|..+...             +..++.+...|+.+.+.+.
T Consensus       399 ~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e-------------~~gr~~l~~~~g~~~l~~~  459 (543)
T PF05536_consen  399 YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE-------------EEGRKILLSNGGWKLLCDD  459 (543)
T ss_pred             HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc-------------HHHHHHHHhCCcHHHHHHH
Confidence            4688999988764322          3566666666666632             2236666677776666654

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.77  E-value=1.8e-05  Score=76.71  Aligned_cols=257  Identities=13%  Similarity=0.150  Sum_probs=181.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      +-+-++.+|.+.. |-+|..|+.++..++...|+..+     -.+|.|.+-|.++|+.++.+|+..++.+++.+|..  .
T Consensus       145 La~Dv~tLL~ssk-pYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn--y  216 (877)
T KOG1059|consen  145 LADDVFTLLNSSK-PYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN--Y  216 (877)
T ss_pred             HHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc--c
Confidence            4566788999988 89999999999999875555433     35799999999999999999999999999887753  1


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHH--HhccC
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND-EKVLTDACRALA--YLADG  227 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~--~l~~~  227 (482)
                      +   ..-|.+..++-.+.+.=+....+..+.+|+.-.|.    .-..+++.+..++++.. ..+...++.++.  +++.+
T Consensus       217 L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g  289 (877)
T KOG1059|consen  217 L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSG  289 (877)
T ss_pred             c---cccHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccC
Confidence            1   25667778885566666677777788887766543    23567888888888654 445555655553  33333


Q ss_pred             CcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 043116          228 TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIIS  307 (482)
Q Consensus       228 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~  307 (482)
                      .++... .++ =.++.|-.++.+.++..+.-++.+++.+...++...+.-     -+.++..|.+. |+.+|..|.-.+-
T Consensus       290 ~~d~~a-siq-LCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~-----kdlIlrcL~Dk-D~SIRlrALdLl~  361 (877)
T KOG1059|consen  290 MSDHSA-SIQ-LCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH-----KDLILRCLDDK-DESIRLRALDLLY  361 (877)
T ss_pred             CCCcHH-HHH-HHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh-----HHHHHHHhccC-CchhHHHHHHHHH
Confidence            211111 111 135677788889999999999999999998777655422     34678899998 9999999999888


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCH
Q 043116          308 NITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTH  357 (482)
Q Consensus       308 nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~  357 (482)
                      -+..  .+++..     ++..|+..+. ++....+...+.-+..+++..+.
T Consensus       362 gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~snY  405 (877)
T KOG1059|consen  362 GMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSNY  405 (877)
T ss_pred             HHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhhh
Confidence            7764  333333     4455555554 34446777777766667664443

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.76  E-value=4.9e-08  Score=90.71  Aligned_cols=370  Identities=12%  Similarity=0.112  Sum_probs=229.7

Q ss_pred             hhhhhhhccHHHHHHHhcCCCHHHHH--HHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-------C---CChHH
Q 043116           20 LNLQSKFEILPTMVAGVWSDDNKVQL--EATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-------E---DYPQL   87 (482)
Q Consensus        20 ~~~~~~~~~i~~l~~~l~s~~~~~~~--~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-------~---~~~~v   87 (482)
                      +..+..+...+.+++.+...++.-|.  .....|.|+..-..    ..-+..|++..--.++.+       .   -+.+.
T Consensus       329 Q~~e~~~~~t~k~I~~F~eS~e~~rllll~~~ll~n~~e~~~----~~~~nq~fI~a~~~~~e~~t~~~~~~vn~~~d~l  404 (743)
T COG5369         329 QLFEKDIELTSKIIDRFHESKESERLLLLTPELLFNMYELTA----GLEENQRFIAARSKMIESVTGTFKTKVNRKQDDL  404 (743)
T ss_pred             hhcchheeehHHHHHHHHhcChhhhhhhcCHHHHHhHHHHhh----hhhhhhhhhHHHHHHHHhhhhhhhccCCccchHH
Confidence            44555666788888888755554432  33344444332210    000112333222222221       1   11233


Q ss_pred             H-HHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc
Q 043116           88 Q-FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE  166 (482)
Q Consensus        88 ~-~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  166 (482)
                      . ..++.+|..++..-.-.|..+.+..+.+.|+++|++++..+.-.+...++|+...-...+..+.+.|++..+++++ .
T Consensus       405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v-~  483 (743)
T COG5369         405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLV-M  483 (743)
T ss_pred             HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHh-h
Confidence            3 3345566667665555677778888999999999998888888888899999877677889999999999999999 5


Q ss_pred             hhhhhHHHHHHHHHHHhhcCCC-CCChhhh-hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH---HHHHHHHh---
Q 043116          167 HAKLSMLRTATWTLSNFCRGKP-QPPFNQI-RPALRVLAQLIRSNDEKVLTDACRALAYLADGTND---KIQAVIEA---  238 (482)
Q Consensus       167 ~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~---~~~~~~~~---  238 (482)
                      +.|..++.+..|.+.++..+.. ....... ...+..++.+.++++..++..++..|.|+..+...   ..+..+..   
T Consensus       484 sKDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         484 SKDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             cchhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            6677899999999999998763 3333333 56788899999999999999999999999974332   11111111   


Q ss_pred             C-cHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCC---------C-chhHHHHHHHHH
Q 043116          239 G-VCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHN---------H-NKSIKKEVCWII  306 (482)
Q Consensus       239 ~-~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~---------~-~~~v~~~a~~~L  306 (482)
                      . ++..+...+...+|-.....+.+|.+++..++.....+.. ..++..+..++...         . ...+-.--....
T Consensus       564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~~  643 (743)
T COG5369         564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYTI  643 (743)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCccceee
Confidence            1 4456667777777777777799999998877765554443 24444444444211         0 111111222233


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC--------CCHHHHHHHHHcCChHHHHhcCCC
Q 043116          307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG--------GTHEQIKHLVREGCVKPLCDLLPC  378 (482)
Q Consensus       307 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~--------~~~~~~~~l~~~~~l~~L~~ll~~  378 (482)
                      .++...+...-+.+....-.+..-+--..++.+.-.+..|.+.|+...        .+.++++.+.+.|.-+.+..+..+
T Consensus       644 v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~~  723 (743)
T COG5369         644 VNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQAK  723 (743)
T ss_pred             ecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhcc
Confidence            333321111111111000111111111124556777788887776432        145778888999999999999999


Q ss_pred             CCHHHHHHHHHHHHHH
Q 043116          379 PDPQIVTVCLIGLENI  394 (482)
Q Consensus       379 ~~~~v~~~~l~~L~~l  394 (482)
                      +++.|++++-.+|.++
T Consensus       724 ~Sl~vrek~~taL~~l  739 (743)
T COG5369         724 DSLIVREKIGTALENL  739 (743)
T ss_pred             CcHHHHHHHHHHHHhh
Confidence            9999999999888775

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=6.4e-07  Score=84.01  Aligned_cols=319  Identities=12%  Similarity=0.093  Sum_probs=206.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +.+|..+.++...|..++..|...+.|++...+.  .....-+.++..+.++..+++ ..++. ++..+-.+..+-.-.+
T Consensus        84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~--~v~~~Fn~iFdvL~klsaDsd-~~V~~-~aeLLdRLikdIVte~  159 (675)
T KOG0212|consen   84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKG--EVLVYFNEIFDVLCKLSADSD-QNVRG-GAELLDRLIKDIVTES  159 (675)
T ss_pred             HhhHHHHHhccCccceeeeHhHHHHHHHHHHhcc--CcccchHHHHHHHHHHhcCCc-ccccc-HHHHHHHHHHHhcccc
Confidence            4579999999999999999999999999876422  222234456777788877777 56655 3344444333111111


Q ss_pred             H-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH-HhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          107 K-VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL-SQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       107 ~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      . .+-=.+++|.|-+-+...++..|...+.-|..+-.. |. .+.+. -..+++.|++++ .++..+++..+-.+++++.
T Consensus       160 ~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~-P~-~~m~~yl~~~ldGLf~~L-sD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  160 ASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSV-PD-LEMISYLPSLLDGLFNML-SDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             ccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcC-Cc-HHHHhcchHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Confidence            1 122224566666666778888888877777766422 22 22221 123577788888 6677778877777676666


Q ss_pred             cCCC-CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh-hHHHHHHH
Q 043116          185 RGKP-QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL-VLTAALRT  262 (482)
Q Consensus       185 ~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~-v~~~a~~~  262 (482)
                      ..-. ..........++.++.-+.++++.++..++.-+..+..-.+.. -...-+|++..+++++.+.++. ++..+...
T Consensus       237 ~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~  315 (675)
T KOG0212|consen  237 AEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMV  315 (675)
T ss_pred             HHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hhhhhhhhhhhcccCCCCCccccHHHHHHHH
Confidence            5432 2222244678888999999999999999988888777554432 2344568889999999887664 44433222


Q ss_pred             ---HhHhhcCChhhHHHHHhc-CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116          263 ---IGNIVTGDDFQTQCIINC-GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF  338 (482)
Q Consensus       263 ---L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  338 (482)
                         +..++. .+..... ++. .+++.+.+.+.++ ..+.|..+..-+..+-...|..+-. ....+++.|+.-+.+.+.
T Consensus       316 n~~l~~l~s-~~~~~~~-id~~~ii~vl~~~l~~~-~~~tri~~L~Wi~~l~~~~p~ql~~-h~~~if~tLL~tLsd~sd  391 (675)
T KOG0212|consen  316 NGLLLKLVS-SERLKEE-IDYGSIIEVLTKYLSDD-REETRIAVLNWIILLYHKAPGQLLV-HNDSIFLTLLKTLSDRSD  391 (675)
T ss_pred             HHHHHHHHh-hhhhccc-cchHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHhhCcchhhh-hccHHHHHHHHhhcCchh
Confidence               222322 1111111 232 3677788888888 8888888876666665544443222 235689999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCH
Q 043116          339 GTKKEAAWVISNATSGGTH  357 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~~  357 (482)
                      ++...++..+.+++...+.
T Consensus       392 ~vvl~~L~lla~i~~s~~~  410 (675)
T KOG0212|consen  392 EVVLLALSLLASICSSSNS  410 (675)
T ss_pred             HHHHHHHHHHHHHhcCccc
Confidence            9999999999999985443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.75  E-value=6.4e-07  Score=89.70  Aligned_cols=246  Identities=16%  Similarity=0.190  Sum_probs=190.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      +|..++.|=|  .--++.|+..|..++... ...+..-..-|++|.++++|+++. .+++---+.+.+.|..-++.++..
T Consensus       474 LPiVLQVLLS--QvHRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a-~ELrpiLVFIWAKILAvD~SCQ~d  549 (1387)
T KOG1517|consen  474 LPIVLQVLLS--QVHRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSA-RELRPILVFIWAKILAVDPSCQAD  549 (1387)
T ss_pred             cchHHHHHHH--HHHHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccch-HhhhhhHHHHHHHHHhcCchhHHH
Confidence            4555555533  233567888888888876 667777889999999999999999 899999999999988888999988


Q ss_pred             HHhCCChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          109 AIDHGAVPIFVKLLAS---PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      +++.++-..++..+..   -+++-|..|+.+|+.++.+.+..++.+.+.+.+...+.++.++..+-+++-++-+|..|-.
T Consensus       550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~  629 (1387)
T KOG1517|consen  550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWE  629 (1387)
T ss_pred             HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhh
Confidence            8888888888888875   2468899999999999988888888899989899888888554556677779999999998


Q ss_pred             CCCCCChh-hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC----CcHHHHHH------------HHhCcH---HHHH
Q 043116          186 GKPQPPFN-QIRPALRVLAQLIRSNDEKVLTDACRALAYLADG----TNDKIQAV------------IEAGVC---PRLV  245 (482)
Q Consensus       186 ~~~~~~~~-~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~----~~~~~~~~------------~~~~~l---~~L~  245 (482)
                      +.+..... ...++...|..++.++-+++|..+..+|+.+..+    .+++...+            .+.-+.   -.++
T Consensus       630 d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll  709 (1387)
T KOG1517|consen  630 DYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLL  709 (1387)
T ss_pred             hcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHH
Confidence            76444443 3468889999999999999999999999998865    22222221            111111   2566


Q ss_pred             HhhCCCChhhHHHHHHHHhHhhcCChhhHHHHH
Q 043116          246 KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCII  278 (482)
Q Consensus       246 ~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~  278 (482)
                      ..+++.++-++.+..-+|..++.+...+...+.
T Consensus       710 ~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va  742 (1387)
T KOG1517|consen  710 ALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA  742 (1387)
T ss_pred             HHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence            677888888999988888888876666555443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=98.72  E-value=5.6e-06  Score=78.69  Aligned_cols=338  Identities=13%  Similarity=0.108  Sum_probs=212.6

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh--HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN--TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR  148 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  148 (482)
                      ++..++.+|+++. +++|.+|+...+.++.--..+  .+.+...|  ..|.+.+...++++.-..+.+++.+..... .+
T Consensus       605 ivStiL~~L~~k~-p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~-~~  680 (975)
T COG5181         605 IVSTILKLLRSKP-PDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHR-FR  680 (975)
T ss_pred             HHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhc-cc
Confidence            4566678889999 999999999888876511111  12233333  346667777888888777777776652111 10


Q ss_pred             H-HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh-hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116          149 D-FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF-NQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD  226 (482)
Q Consensus       149 ~-~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~  226 (482)
                      . .---.|++|.+..+| .+....+..+....+..++...|.... .....+-=-|+..|.+.+.+++..|...++.++.
T Consensus       681 ~mqpPi~~ilP~ltPIL-rnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         681 SMQPPISGILPSLTPIL-RNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             ccCCchhhccccccHhh-hhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            0 001346889999999 677788999999999999988754322 2223344447778888999999999999998885


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116          227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       227 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L  306 (482)
                      .-.       -..++..|+.-|+..+..-|....-+++-.+..+...       .++|.|+.=...+ +..|+.....++
T Consensus       760 aiG-------PqdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf-------sVlP~lm~dY~TP-e~nVQnGvLkam  824 (975)
T COG5181         760 AIG-------PQDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF-------SVLPTLMSDYETP-EANVQNGVLKAM  824 (975)
T ss_pred             hcC-------HHHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch-------hhHHHHHhcccCc-hhHHHHhHHHHH
Confidence            422       1234455555555544444444333444333322221       4567777777777 788998888888


Q ss_pred             HHHhcCCHH-HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHH-HHHHHHcCChHHHHhcCCCCCHHHH
Q 043116          307 SNITAGNRE-QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ-IKHLVREGCVKPLCDLLPCPDPQIV  384 (482)
Q Consensus       307 ~nl~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~-~~~l~~~~~l~~L~~ll~~~~~~v~  384 (482)
                      +.+.....+ ...++.  -+.|.|-+.+.+.|+--+..|...+.+++.++.... ...++.  .+..|..-.-.+.|.+.
T Consensus       825 ~fmFeyig~~s~dYvy--~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IH--LlNllwpNIle~sPhvi  900 (975)
T COG5181         825 CFMFEYIGQASLDYVY--SITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIH--LLNLLWPNILEPSPHVI  900 (975)
T ss_pred             HHHHHHHHHHHHHHHH--HhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHHhhhhccCCCcHHH
Confidence            887652222 122332  267788888889999999999999999988642111 111111  23333333346777787


Q ss_pred             HHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       385 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      ....+++..+...-.                   .--.+..+.+=+-|++..|+++.=.+.+..+.-
T Consensus       901 ~~~~Eg~e~~~~~lg-------------------~g~~m~Yv~qGLFHPs~~VRk~ywtvyn~myv~  948 (975)
T COG5181         901 QSFDEGMESFATVLG-------------------SGAMMKYVQQGLFHPSSTVRKRYWTVYNIMYVF  948 (975)
T ss_pred             HHHHHHHHHHHHHhc-------------------cHHHHHHHHHhccCchHHHHHHHHHHHhhhhhc
Confidence            777777766654311                   111245566667899999988887777765543

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.72  E-value=2.5e-06  Score=78.39  Aligned_cols=238  Identities=11%  Similarity=0.173  Sum_probs=169.9

Q ss_pred             hhHHHHHHHHhccCCh--hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCChh
Q 043116          196 RPALRVLAQLIRSNDE--KVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~--~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~  272 (482)
                      .+.+..|+.++..++.  .++..+.+.|-.+...  ++.+.+..-| +..++.+-+.. .++.....+.+|.++..++++
T Consensus       179 ~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  179 DGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             cchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHH
Confidence            6888999999998875  4588899988877632  3445566655 56666665443 456888899999999999999


Q ss_pred             hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                      ..+.++..|+++.++-..+.. ++.+...++.+|+|++. +..+..+.+++..+-+-|.-+..+.|.-++..||.+++.+
T Consensus       256 t~~~Lvaa~~lD~vl~~~rRt-~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AClAV~vl  334 (832)
T KOG3678|consen  256 TCQRLVAAGGLDAVLYWCRRT-DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHACLAVAVL  334 (832)
T ss_pred             HHHHHHhhcccchheeecccC-CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHHHHHhhh
Confidence            999999999999999999988 89999999999999997 5666677888877877777777788888999999999999


Q ss_pred             hcCCCHHHHHHHHHcCChHHHHhcCCCCCH-----------------------------HHHHHHHHHHHHHHHhchhcc
Q 043116          352 TSGGTHEQIKHLVREGCVKPLCDLLPCPDP-----------------------------QIVTVCLIGLENILKVGEAEK  402 (482)
Q Consensus       352 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-----------------------------~v~~~~l~~L~~l~~~~~~~~  402 (482)
                      +.  ..+.-..+...|.+.....++.+-||                             ..-..|+.++.-..+..-+  
T Consensus       335 at--~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EAq~i~AF~l~~EAaIK--  410 (832)
T KOG3678|consen  335 AT--NKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEAQCIGAFYLCAEAAIK--  410 (832)
T ss_pred             hh--hhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhhhhhHHHHHHHHHHHH--
Confidence            87  34444444455543333333221111                             1112233333222221111  


Q ss_pred             ccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116          403 NTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILET  447 (482)
Q Consensus       403 ~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~  447 (482)
                      +..      -....|.+.|.++.|.++..+++..-...|...+.-
T Consensus       411 s~Q------~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtv  449 (832)
T KOG3678|consen  411 SLQ------GKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTV  449 (832)
T ss_pred             Hhc------cchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            111      126778999999999999999887777777777653

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.72  E-value=1.2e-06  Score=80.37  Aligned_cols=273  Identities=17%  Similarity=0.133  Sum_probs=189.6

Q ss_pred             HHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHh
Q 043116           63 IEKVIQSGVVPRFVEFLMREDY-PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNV  140 (482)
Q Consensus        63 ~~~~~~~g~~~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l  140 (482)
                      .+.+...|++..|++++..++. ..++.+|.+.|-.+..  .++++.+...| +..++.+-+ .+.++..+..+..|.++
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m  249 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM  249 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence            3455667899999999998872 3469999999999875  78888888877 555555554 45678889999999999


Q ss_pred             hCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCC-hhhhhhHHHHHHHHhccCChhHHHHHH
Q 043116          141 AGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPP-FNQIRPALRVLAQLIRSNDEKVLTDAC  218 (482)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l  218 (482)
                      ..++.+....++..|++..++.-+ ...++.+.+.++.+|.|+.... ...+ ..+...+..-|..+-.+.|+-.+.++|
T Consensus       250 FKHSeet~~~Lvaa~~lD~vl~~~-rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC  328 (832)
T KOG3678|consen  250 FKHSEETCQRLVAAGGLDAVLYWC-RRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC  328 (832)
T ss_pred             hhhhHHHHHHHHhhcccchheeec-ccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence            998888778888999999998888 6667999999999999999876 2222 223345566677776777888899999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhH
Q 043116          219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI  298 (482)
Q Consensus       219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v  298 (482)
                      .+.+.++.+.+ ....+..+|.+...-.++.+.+|.--          +.+..+..+ --....++.|+.+|++. .-+.
T Consensus       329 lAV~vlat~KE-~E~~VrkS~TlaLVEPlva~~DP~~F----------ARD~hd~aQ-G~~~d~LqRLvPlLdS~-R~EA  395 (832)
T KOG3678|consen  329 LAVAVLATNKE-VEREVRKSGTLALVEPLVASLDPGRF----------ARDAHDYAQ-GRGPDDLQRLVPLLDSN-RLEA  395 (832)
T ss_pred             HHHhhhhhhhh-hhHHHhhccchhhhhhhhhccCcchh----------hhhhhhhhc-cCChHHHHHhhhhhhcc-hhhh
Confidence            99999997654 33446666776666666666555311          111111100 01113567888899877 6666


Q ss_pred             HHHHHHHHHHHhc-CCH-HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116          299 KKEVCWIISNITA-GNR-EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT  352 (482)
Q Consensus       299 ~~~a~~~L~nl~~-~~~-~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~  352 (482)
                      +..+++-++.=+. .+. ...+-+-+-|.|..|.++..+.+.--.+.|-.+|.-+-
T Consensus       396 q~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviG  451 (832)
T KOG3678|consen  396 QCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIG  451 (832)
T ss_pred             hhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhc
Confidence            6666665554443 111 11233446788999999888776655555666666553

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.71  E-value=6.4e-06  Score=82.03  Aligned_cols=354  Identities=13%  Similarity=0.122  Sum_probs=222.1

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI  110 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  110 (482)
                      .|++.+.+.|.+.++.|..-|.+=+... .-..+.--+..++..++++|++.+ .++|..|++|++-++..-++.+   +
T Consensus         9 ~LlekmtssDKDfRfMAtsDLm~eLqkd-si~Ld~dSe~kvv~~lLklL~D~n-gEVQnlAVKClg~lvsKvke~~---l   83 (1233)
T KOG1824|consen    9 NLLEKMTSSDKDFRFMATSDLMTELQKD-SIKLDDDSERKVVKMLLKLLEDKN-GEVQNLAVKCLGPLVSKVKEDQ---L   83 (1233)
T ss_pred             HHHHHccCCCcchhhhhHHHHHHHHHhh-hhhccccchhHHHHHHHHHHhccC-cHHHHHHHHHHHHHHhhchHHH---H
Confidence            6788888999999999999888776653 222222224567889999999999 9999999999999986333322   1


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCC----hHHHHHHHcchhhh-hHHHHHHHHHHHhhc
Q 043116          111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA----LIPLLAELNEHAKL-SMLRTATWTLSNFCR  185 (482)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~----i~~l~~~l~~~~~~-~~~~~a~~~L~~L~~  185 (482)
                      + ..++.|+.-+-++....|..+.-.|......-++.........+    .+.+...+....+. .++..++..+..+..
T Consensus        84 e-~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~ls  162 (1233)
T KOG1824|consen   84 E-TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLS  162 (1233)
T ss_pred             H-HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHH
Confidence            1 23455555444444445543333333222222221112222223    33444444332332 366667777665554


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHh
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIG  264 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~  264 (482)
                      .-...-.....+++.++..-+.++..-++..++.+|+.++...+..   ++ .+++..+++-|..+ .+.....-+.+|+
T Consensus       163 r~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~---ly-~~li~~Ll~~L~~~~q~~~~rt~Iq~l~  238 (1233)
T KOG1824|consen  163 RFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRD---LY-VELIEHLLKGLSNRTQMSATRTYIQCLA  238 (1233)
T ss_pred             hhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHH---HH-HHHHHHHHhccCCCCchHHHHHHHHHHH
Confidence            4322222244677778888888889999999999999999554321   11 24566777777553 4555566677888


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHh---cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLL---IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD------  335 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll---~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------  335 (482)
                      .+++........ .-..+++.+.+..   +.. +.+.|+....++..+...+|..+-..+. .++..+++.+..      
T Consensus       239 ~i~r~ag~r~~~-h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp~ei~p~~p-ei~~l~l~yisYDPNy~y  315 (1233)
T KOG1824|consen  239 AICRQAGHRFGS-HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCPKEILPHVP-EIINLCLSYISYDPNYNY  315 (1233)
T ss_pred             HHHHHhcchhhc-ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhChhhhcccch-HHHHHHHHHhccCCCCCC
Confidence            887643322111 1124677777777   555 7889999999999888766665544433 244555554421      


Q ss_pred             ----------------------------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHH
Q 043116          336 ----------------------------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVC  387 (482)
Q Consensus       336 ----------------------------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~  387 (482)
                                                  -++.+|++|+.++..+... ..+....+. +..-+.++.-++..+..|+.-+
T Consensus       316 d~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsS-R~E~L~~~~-q~l~p~lI~RfkEREEnVk~dv  393 (1233)
T KOG1824|consen  316 DTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISS-RLEMLPDFY-QTLGPALISRFKEREENVKADV  393 (1233)
T ss_pred             CCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhc-cHHHHHHHH-HHhCHHHHHHHHHHhhhHHHHH
Confidence                                        0134899999999999874 444444433 3456888888888888898888


Q ss_pred             HHHHHHHHHhch
Q 043116          388 LIGLENILKVGE  399 (482)
Q Consensus       388 l~~L~~l~~~~~  399 (482)
                      +.++..++...+
T Consensus       394 f~~yi~ll~qt~  405 (1233)
T KOG1824|consen  394 FHAYIALLKQTR  405 (1233)
T ss_pred             HHHHHHHHHcCC
Confidence            888888887543

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=98.70  E-value=4.3e-05  Score=76.36  Aligned_cols=331  Identities=11%  Similarity=0.112  Sum_probs=208.5

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCCh
Q 043116           78 FLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGAL  157 (482)
Q Consensus        78 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  157 (482)
                      +.+...+..++.-|+-.|+.+-.+-+..    -..+.-..+++.+.+++++++.+|..+|++++.++-+        ..+
T Consensus       826 ~~s~~s~~~ikvfa~LslGElgr~~~~s----~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~--------~yL  893 (1233)
T KOG1824|consen  826 LQSPKSSDSIKVFALLSLGELGRRKDLS----PQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP--------KYL  893 (1233)
T ss_pred             HhCCCCchhHHHHHHhhhhhhccCCCCC----cchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH--------hHH
Confidence            3333333577888888888886632221    1234556788999999999999999999999965422        146


Q ss_pred             HHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116          158 IPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI  236 (482)
Q Consensus       158 ~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  236 (482)
                      |.++..+...  +.-+.-.+..|....... ..........+...|..-.....+..|.-+..||+.++..+++.     
T Consensus       894 pfil~qi~sq--pk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~epes-----  966 (1233)
T KOG1824|consen  894 PFILEQIESQ--PKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIEPES-----  966 (1233)
T ss_pred             HHHHHHHhcc--hHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCChHH-----
Confidence            6677766332  222222333333333222 22222233445555555555667778999999999999877753     


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116          237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ  316 (482)
Q Consensus       237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~  316 (482)
                         .++.|-..+.++.+..|..++.++.......+.-...+. ...+..++.+++++ +.+||+.|..++...+...|..
T Consensus       967 ---LlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~l-k~~ig~fl~~~~dp-Dl~VrrvaLvv~nSaahNKpsl 1041 (1233)
T KOG1824|consen  967 ---LLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLL-KQQIGDFLKLLRDP-DLEVRRVALVVLNSAAHNKPSL 1041 (1233)
T ss_pred             ---HHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHH-HHHHHHHHHHHhCC-chhHHHHHHHHHHHHHccCHhH
Confidence               468898999999999999998888877765555444333 35677889999999 9999999999999998777776


Q ss_pred             HHHHHHcCChHHHHHH----------Hh--------cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116          317 IQAVIDAGLIGPIVNL----------LQ--------DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC  378 (482)
Q Consensus       317 ~~~l~~~~~i~~L~~l----------l~--------~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  378 (482)
                      ++.++. .++|.|.+-          .+        ++.-++|+.|..++..+...+-  ....+.  .++..+..-|++
T Consensus      1042 IrDllp-eLLp~Ly~eTkvrkelIreVeMGPFKH~VDdgLd~RKaaFEcmytLLdscl--d~~dit--~Fl~~~~~GL~D 1116 (1233)
T KOG1824|consen 1042 IRDLLP-ELLPLLYSETKVRKELIREVEMGPFKHTVDDGLDLRKAAFECMYTLLDSCL--DRLDIT--EFLNHVEDGLED 1116 (1233)
T ss_pred             HHHHHH-HHHHHHHHhhhhhHhhhhhhcccCccccccchHHHHHHHHHHHHHHHHhhh--hhccHH--HHHHHHHhhcch
Confidence            654443 233333321          11        1235689999999998876321  111111  133344444443


Q ss_pred             CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhh------------cCCCHHHHHHHHHHHH
Q 043116          379 PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQ------------SHDNNDIHEMSVKILE  446 (482)
Q Consensus       379 ~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~------------~~~~~~v~~~a~~~l~  446 (482)
                      . .+++..+.-.+.++...++...           .+.+.+  .++.|..-.            .....++.+.|.+++-
T Consensus      1117 h-ydiKmlt~l~l~rLa~lcPs~V-----------lqrlD~--l~EpLr~t~~~k~k~~svKqE~ek~~eLkRSAlRav~ 1182 (1233)
T KOG1824|consen 1117 H-YDIKMLTFLMLARLADLCPSAV-----------LQRLDR--LVEPLRKTCTLKVKANSVKQEFEKQDELKRSALRAVA 1182 (1233)
T ss_pred             h-hHHHHHHHHHHHHHHhhCcHHH-----------HHHHHH--HHHHHHHHhhcccccchHhHhHHHHHHHHHHHHHHHH
Confidence            3 6888888888999988776642           222111  123333321            1234677888888888


Q ss_pred             HhcCC
Q 043116          447 TYWCG  451 (482)
Q Consensus       447 ~~~~~  451 (482)
                      .+...
T Consensus      1183 ~L~~i 1187 (1233)
T KOG1824|consen 1183 ALLTI 1187 (1233)
T ss_pred             HHhcc
Confidence            87444

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.68  E-value=0.00015  Score=69.85  Aligned_cols=343  Identities=15%  Similarity=0.136  Sum_probs=219.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .+..+++-+..+.+++|.....+|.-+.........     ..+.+.+.+++..+. ..-+..+.+.++.+..+.  ...
T Consensus        97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~~-----~~~l~~l~~ll~~~~-~~~~~~aa~~~ag~v~g~--~i~  168 (569)
T KOG1242|consen   97 IIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLSG-----EYVLELLLELLTSTK-IAERAGAAYGLAGLVNGL--GIE  168 (569)
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccCH-----HHHHHHHHHHhcccc-HHHHhhhhHHHHHHHcCc--HHh
Confidence            467778888888899998888888777654322222     235667888888777 788899999999988743  345


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHH-HHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQ-AVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~-a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      .+.+.+++..+.+.+.+.....++. +..+.-..+..- +...-.+.  ..++.++... .+..+.++..+..+...+.+
T Consensus       169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv--~~lp~il~~~-~d~~~~Vr~Aa~~a~kai~~  245 (569)
T KOG1242|consen  169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIV--PILPSILTNF-GDKINKVREAAVEAAKAIMR  245 (569)
T ss_pred             hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHH--hhHHHHHHHh-hccchhhhHHHHHHHHHHHH
Confidence            5667788999999988765554442 333333332111 11111111  1344445444 44556777776666665554


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                      .-+   ......++|.++.-+....+.....++..++.++...+.+.. .+-..++|.+...|.+..++++..+..+|.+
T Consensus       246 ~~~---~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs-~~lp~iiP~lsevl~DT~~evr~a~~~~l~~  321 (569)
T KOG1242|consen  246 CLS---AYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLS-LCLPDLIPVLSEVLWDTKPEVRKAGIETLLK  321 (569)
T ss_pred             hcC---cchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHH-HHHhHhhHHHHHHHccCCHHHHHHHHHHHHH
Confidence            421   112244555555555545788889999999999987776654 4555889999999999999999999999999


Q ss_pred             hhcC--ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC----ChHHHHHHHhcCChh
Q 043116          266 IVTG--DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG----LIGPIVNLLQDAEFG  339 (482)
Q Consensus       266 l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~----~i~~L~~ll~~~~~~  339 (482)
                      ++.-  +++. .     .++|.|++.+.++ ...+. ++...|+.-..     + ..++..    ++|.|.+-+...+..
T Consensus       322 ~~svidN~dI-~-----~~ip~Lld~l~dp-~~~~~-e~~~~L~~ttF-----V-~~V~~psLalmvpiL~R~l~eRst~  387 (569)
T KOG1242|consen  322 FGSVIDNPDI-Q-----KIIPTLLDALADP-SCYTP-ECLDSLGATTF-----V-AEVDAPSLALMVPILKRGLAERSTS  387 (569)
T ss_pred             HHHhhccHHH-H-----HHHHHHHHHhcCc-ccchH-HHHHhhcceee-----e-eeecchhHHHHHHHHHHHHhhccch
Confidence            8863  2332 1     3678888888877 42222 22222222111     0 011111    345555555667888


Q ss_pred             HHHHHHHHHHHhhcCC-CHHHH-HHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116          340 TKKEAAWVISNATSGG-THEQI-KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       340 ~~~~a~~aL~~l~~~~-~~~~~-~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~  401 (482)
                      +++.++..+.|++.-- ++... .++-+  .++-|-..+....|++|..+..+|..+.+.....
T Consensus       388 ~kr~t~~IidNm~~LveDp~~lapfl~~--Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~  449 (569)
T KOG1242|consen  388 IKRKTAIIIDNMCKLVEDPKDLAPFLPS--LLPGLKENLDDAVPEVRAVAARALGALLERLGEV  449 (569)
T ss_pred             hhhhHHHHHHHHHHhhcCHHHHhhhHHH--HhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhh
Confidence            9999999999998643 33332 23222  5666777777788999999999998888754443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=1.8e-05  Score=69.12  Aligned_cols=272  Identities=13%  Similarity=0.150  Sum_probs=174.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH--hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI--QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +-.+++++.+.+|.++..|...+..++...    .+.+.  +...++.+.+++.... +  ...|+.++.|++. .+..+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~----~~~~~~~~~~~lk~l~qL~~~~~-~--~~~a~~alVnlsq-~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG----LQSLSKYSEALLKDLTQLLKDLD-P--AEPAATALVNLSQ-KEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccc----hhhhccchhhhHHHHHHHccCcc-c--ccHHHHHHHHHHh-hHHHH
Confidence            456889999999999999999998887652    12222  3456888899998877 4  6789999999998 78888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC-----ChHHHHHHHcchhhh--hHHHHHHHH
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG-----ALIPLLAELNEHAKL--SMLRTATWT  179 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-----~i~~l~~~l~~~~~~--~~~~~a~~~  179 (482)
                      +.+++. .+..+...+.++...+....+..++|++..............     .+..+....-+..-.  .-..+.+.+
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            888877 778888888877677778889999999987766554443221     233333333222211  334567778


Q ss_pred             HHHhhcCCCCCChhhhhhH--HHHHHHHhccCChhHH-HHHHHHHHHhccCCcHHHHHHHHh--CcHHHHH---------
Q 043116          180 LSNFCRGKPQPPFNQIRPA--LRVLAQLIRSNDEKVL-TDACRALAYLADGTNDKIQAVIEA--GVCPRLV---------  245 (482)
Q Consensus       180 L~~L~~~~~~~~~~~~~~~--~~~L~~ll~~~~~~~~-~~~l~~L~~l~~~~~~~~~~~~~~--~~l~~L~---------  245 (482)
                      +.|+++....+........  .+.+..+-. .+..+| ...+..|.|.+-... ....+.+.  .+++.++         
T Consensus       156 f~nls~~~~gR~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~lLp~iLlPlagpee~  233 (353)
T KOG2973|consen  156 FANLSQFEAGRKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINLLPAILLPLAGPEEL  233 (353)
T ss_pred             HHHHhhhhhhhhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hHHHHhcchHHHHHHHHhhcCCcccc
Confidence            8888887544333333222  223333333 455554 346777777663322 22223332  1222221         


Q ss_pred             ------------HhhC-----CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          246 ------------KLLG-----HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       246 ------------~ll~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                                  +++.     .+++.++..-+.+|.-++. ....++.+...|+.+.+-.+-+..++++++..+-.....
T Consensus       234 sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  234 SEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             CHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                        2231     2467899999999999987 444456677888888888887777677777655555555


Q ss_pred             HhcC
Q 043116          309 ITAG  312 (482)
Q Consensus       309 l~~~  312 (482)
                      +...
T Consensus       313 Lv~~  316 (353)
T KOG2973|consen  313 LVRL  316 (353)
T ss_pred             HHhc
Confidence            5443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=1.2e-05  Score=70.32  Aligned_cols=268  Identities=15%  Similarity=0.112  Sum_probs=167.6

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH--hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI--DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~--~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      +.-++.++.+.+ |.++..|+..+..++..  .. +.+.  +...++.+.+++....+  .+.|+.++.|++.. +..++
T Consensus         5 l~elv~ll~~~s-P~v~~~AV~~l~~lt~~--~~-~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~   77 (353)
T KOG2973|consen    5 LVELVELLHSLS-PPVRKAAVEHLLGLTGR--GL-QSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRK   77 (353)
T ss_pred             HHHHHHHhccCC-hHHHHHHHHHHhhcccc--ch-hhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHH
Confidence            345789999999 99999999999999874  22 2222  23467888888887666  67799999999944 55677


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhh-------hhhHHHHHHHHhccCC--hhHHHHHHHH
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ-------IRPALRVLAQLIRSND--EKVLTDACRA  220 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~-------~~~~~~~L~~ll~~~~--~~~~~~~l~~  220 (482)
                      .+++. ++..++..+ .++....-...+..|+|+++.........       ..+++.....+.+.+-  ..-..+.+..
T Consensus        78 ~ll~~-~~k~l~~~~-~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   78 KLLQD-LLKVLMDML-TDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHH-HHHHHHHHh-cCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            77665 666677776 55555677788999999998763221111       1334444444444332  2345667777


Q ss_pred             HHHhccCCcHHHHHHHHhCc--HHHHHHhhCCCChhhHHH-HHHHHhHhhcCChhhHHHHHhc--CchHHHHHHh-----
Q 043116          221 LAYLADGTNDKIQAVIEAGV--CPRLVKLLGHRSRLVLTA-ALRTIGNIVTGDDFQTQCIINC--GALRYLLGLL-----  290 (482)
Q Consensus       221 L~~l~~~~~~~~~~~~~~~~--l~~L~~ll~~~~~~v~~~-a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll-----  290 (482)
                      +.|++..... +..+.+...  .+.++.+-. .+..+|.. .+++|.|.+.....+-. +++.  ++++.++--+     
T Consensus       156 f~nls~~~~g-R~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e~~~lLp~iLlPlagpee  232 (353)
T KOG2973|consen  156 FANLSQFEAG-RKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDESINLLPAILLPLAGPEE  232 (353)
T ss_pred             HHHHhhhhhh-hhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-HhcchHHHHHHHHhhcCCccc
Confidence            7888865432 333444332  233333333 45555544 78899998875554433 3322  3344443322     


Q ss_pred             ----------------c----CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHH
Q 043116          291 ----------------I----HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVIS  349 (482)
Q Consensus       291 ----------------~----~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~  349 (482)
                                      .    ..+++.+|+.-..+|.-+|.. ...++.+...|+.+.+-.+-+. ++++++. ++.-+.
T Consensus       233 ~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~-ace~vv  310 (353)
T KOG2973|consen  233 LSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE-ACEQVV  310 (353)
T ss_pred             cCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH-HHHHHH
Confidence                            1    122789999999999999874 4457778888888887777664 4555555 444444


Q ss_pred             Hhhc
Q 043116          350 NATS  353 (482)
Q Consensus       350 ~l~~  353 (482)
                      ++..
T Consensus       311 q~Lv  314 (353)
T KOG2973|consen  311 QMLV  314 (353)
T ss_pred             HHHH
Confidence            4444

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=0.00014  Score=64.23  Aligned_cols=348  Identities=12%  Similarity=0.107  Sum_probs=214.4

Q ss_pred             HHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhH--HHHHHhCChHHHHHHH
Q 043116           89 FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS--RCR--DFVLSQGALIPLLAEL  164 (482)
Q Consensus        89 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~--~~~~~~~~i~~l~~~l  164 (482)
                      ..++.||-.+... .+..  -+-.+..+.|-.-|..++..++..++..++.+..+..  ...  ..+++.++++.++..+
T Consensus        61 tlcVscLERLfka-kega--hlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcI  137 (524)
T KOG4413|consen   61 TLCVSCLERLFKA-KEGA--HLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCI  137 (524)
T ss_pred             hhHHHHHHHHHhh-ccch--hhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHH
Confidence            3366677776651 1111  1122456667777777889999999999998885544  222  2345778888888888


Q ss_pred             cchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH--HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116          165 NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV--LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP  242 (482)
Q Consensus       165 ~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~--L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~  242 (482)
                       -..+.++...+...+..++............+....  +..+-...+.-.+..++..+..+.+.++........+|.+.
T Consensus       138 -ggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLld  216 (524)
T KOG4413|consen  138 -GGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLD  216 (524)
T ss_pred             -cCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHH
Confidence             677788888999999998876422222222222221  22232334566777888888888888888888888889999


Q ss_pred             HHHHhhCC-CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcC------CH
Q 043116          243 RLVKLLGH-RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAG------NR  314 (482)
Q Consensus       243 ~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~------~~  314 (482)
                      .|..-|+- .+.-++..++.....++. .+...+.+.+.|+++.+..++.... +|.-+-.+....+.+...      ++
T Consensus       217 lLeaElkGteDtLVianciElvteLae-teHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvse  295 (524)
T KOG4413|consen  217 LLEAELKGTEDTLVIANCIELVTELAE-TEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSE  295 (524)
T ss_pred             HHHHHhcCCcceeehhhHHHHHHHHHH-HhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCH
Confidence            98888866 566788889998888887 3444566778899999999997643 444455455555554431      22


Q ss_pred             HHH-HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC--hHHHHh-cCC---CCCHHHHHHH
Q 043116          315 EQI-QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC--VKPLCD-LLP---CPDPQIVTVC  387 (482)
Q Consensus       315 ~~~-~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~--l~~L~~-ll~---~~~~~v~~~~  387 (482)
                      +.+ ..+.  -+++..++++...|+..+..|+.+++.+-++  .+....+...|-  .+.++. ..+   +.......+|
T Consensus       296 eaiceali--iaidgsfEmiEmnDpdaieaAiDalGilGSn--teGadlllkTgppaaehllarafdqnahakqeaaiha  371 (524)
T KOG4413|consen  296 EAICEALI--IAIDGSFEMIEMNDPDAIEAAIDALGILGSN--TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHA  371 (524)
T ss_pred             HHHHHHHH--HHHHhhHHhhhcCCchHHHHHHHHHHhccCC--cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHH
Confidence            222 1122  1466667777889999999999999999773  344455555543  233322 222   2222344455


Q ss_pred             HHHHHHHHHhchhccccCCCCcccHH----HHHHHHh---chHHHHHHhhcCCCHHHHHHHHHHHHH
Q 043116          388 LIGLENILKVGEAEKNTDNIGDVNQY----AQLVEEA---EGLEKIENLQSHDNNDIHEMSVKILET  447 (482)
Q Consensus       388 l~~L~~l~~~~~~~~~~~~~~~~~~~----~~~l~~~---~~~~~l~~l~~~~~~~v~~~a~~~l~~  447 (482)
                      +.++...++..+.... ++ ......    .....++   .-.+....+...+.++++-.+.+.+..
T Consensus       372 LaaIagelrlkpeqit-Dg-kaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTA  436 (524)
T KOG4413|consen  372 LAAIAGELRLKPEQIT-DG-KAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTA  436 (524)
T ss_pred             HHHhhccccCChhhcc-cc-HHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHH
Confidence            5555555443333211 00 001111    1111111   234555666788999999988876654

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.62  E-value=3.7e-05  Score=72.13  Aligned_cols=333  Identities=14%  Similarity=0.055  Sum_probs=205.7

Q ss_pred             HHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh-hhhHH
Q 043116           95 LTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA-KLSML  173 (482)
Q Consensus        95 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-~~~~~  173 (482)
                      |..+....|..+..+.-....+.+..++-+++.++|..+.+++..+..+... -+.+.+.++-..++..+..+. ...-+
T Consensus         7 Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER   85 (371)
T PF14664_consen    7 LVDLLKRHPTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVER   85 (371)
T ss_pred             HHHHHHhCchhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHH
Confidence            3334444555554444434455555555555599999999999999866544 455666665555666664433 33446


Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCCh
Q 043116          174 RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSR  253 (482)
Q Consensus       174 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  253 (482)
                      .+|...+..+..... .....-.+++..++.+..+.++..+..|+.+|+.++-.+++   .+...|++..+...+.++..
T Consensus        86 ~QALkliR~~l~~~~-~~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   86 EQALKLIRAFLEIKK-GPKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHhcC-CcccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccH
Confidence            678888888877632 22234578999999999999999999999999999977764   47788999999999988766


Q ss_pred             hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC------Cch--hHHHHHHHHHHHHhcCCHHHHHHHHHc--
Q 043116          254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN------HNK--SIKKEVCWIISNITAGNREQIQAVIDA--  323 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~--  323 (482)
                      ++....+.++..+.. +|...+.+...--++.++..+.+.      .+.  +.-..+..++..+.. +....-.+...  
T Consensus       162 ~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr-sW~GLl~l~~~~~  239 (371)
T PF14664_consen  162 SISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR-SWPGLLYLSMNDF  239 (371)
T ss_pred             hHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh-cCCceeeeecCCc
Confidence            688888888888876 555445444433344444444332      122  233344555555543 23333333322  


Q ss_pred             CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHH------HcCCh---HHHHhcCCCCCH---HHHHHHHHHH
Q 043116          324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV------REGCV---KPLCDLLPCPDP---QIVTVCLIGL  391 (482)
Q Consensus       324 ~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~------~~~~l---~~L~~ll~~~~~---~v~~~~l~~L  391 (482)
                      ..+..|++.+..++++++...+..+..+.....+.-.....      ..|-.   ..+.+-......   .........+
T Consensus       240 ~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~  319 (371)
T PF14664_consen  240 RGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLV  319 (371)
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHH
Confidence            47888999999999999999999999997754332111101      11111   001100000000   0000011111


Q ss_pred             HHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 043116          392 ENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETYW  449 (482)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~  449 (482)
                      .+...               -....|.++|.++.|.++..+. ++.+..+|.-++..++
T Consensus       320 ~~y~a---------------Lll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL  363 (371)
T PF14664_consen  320 NHYLA---------------LLLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL  363 (371)
T ss_pred             HHHHH---------------HHHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            11111               1355667999999999998776 8899999998887765

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.55  E-value=2.5e-05  Score=78.82  Aligned_cols=373  Identities=14%  Similarity=0.118  Sum_probs=215.5

Q ss_pred             cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChH
Q 043116           37 WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVP  116 (482)
Q Consensus        37 ~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~  116 (482)
                      +...+.++..++.-+.+++..-....    ...++++.+.++..++. ..+|+.|...+.++.......- . ....+.+
T Consensus       247 ~d~~~~Vr~~~a~~l~~~a~~~~~~~----~~s~v~~~~~~L~~Ddq-dsVr~~a~~~~~~l~~l~~~~~-d-~~~~~~~  319 (759)
T KOG0211|consen  247 QDDTPMVRRAVASNLGNIAKVLESEI----VKSEVLPTLIQLLRDDQ-DSVREAAVESLVSLLDLLDDDD-D-VVKSLTE  319 (759)
T ss_pred             cccchhhHHHHHhhhHHHHHHHHHHH----HHhhccHHHhhhhhcch-hhHHHHHHHHHHHHHHhcCCch-h-hhhhhhH
Confidence            44456666666666666665442221    23456666666666666 5666666666555554111110 0 1112345


Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhC----------------------------------------CChhhHHHHHHhCC
Q 043116          117 IFVKLLASPSDDVREQAVWALGNVAG----------------------------------------DSSRCRDFVLSQGA  156 (482)
Q Consensus       117 ~L~~ll~~~~~~~~~~a~~~L~~l~~----------------------------------------~~~~~~~~~~~~~~  156 (482)
                      .++....+.+..++.........++.                                        .+..+...+....+
T Consensus       320 ~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i  399 (759)
T KOG0211|consen  320 SLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI  399 (759)
T ss_pred             HHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence            55555555444444433332222221                                        00001111112222


Q ss_pred             hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116          157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI  236 (482)
Q Consensus       157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  236 (482)
                      ++.+-.++ .+.+..++...+..+..+....+  ....+....|.+...+++.++.++....+.+..+-...+..-....
T Consensus       400 lp~~~~lv-~d~~~~vr~a~a~~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~  476 (759)
T KOG0211|consen  400 LPEVQVLV-LDNALHVRSALASVITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTV  476 (759)
T ss_pred             hHHHHHHH-hcccchHHHHHhccccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhh
Confidence            33333333 33444444444433333332222  2223466778888888999999999999877665544333333345


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116          237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ  316 (482)
Q Consensus       237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~  316 (482)
                      ....++.+..+-.+..+.++.+.++.+..++....   ..+.+...-+.+...+.+. ...+++.|+..+.-++..... 
T Consensus       477 s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~---~~~~~~~~~~l~~~~l~d~-v~~Ir~~aa~~l~~l~~~~G~-  551 (759)
T KOG0211|consen  477 SNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG---VEFFDEKLAELLRTWLPDH-VYSIREAAARNLPALVETFGS-  551 (759)
T ss_pred             hhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh---hHHhhHHHHHHHHhhhhhh-HHHHHHHHHHHhHHHHHHhCc-
Confidence            55667888887777788899999999988886443   2234444556666667766 778999999999888862111 


Q ss_pred             HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          317 IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       317 ~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                        .......++.++.+...++...|...+.++..++.....+    +.....++.+.++..++.+.|+..+++.|..+..
T Consensus       552 --~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e----i~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  552 --EWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE----ITCEDLLPVFLDLVKDPVANVRINVAKHLPKILK  625 (759)
T ss_pred             --chhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH----HHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHh
Confidence              1112246777777766667888888888888776533322    2334488999999999999999999999999886


Q ss_pred             hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHH
Q 043116          397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL  445 (482)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l  445 (482)
                      .-...               ..+....+.++.+-.+++.+++-+|....
T Consensus       626 ~L~~~---------------~~~~~v~pll~~L~~d~~~dvr~~a~~a~  659 (759)
T KOG0211|consen  626 LLDES---------------VRDEEVLPLLETLSSDQELDVRYRAILAF  659 (759)
T ss_pred             hcchH---------------HHHHHHHHHHHHhccCcccchhHHHHHHH
Confidence            53221               12333455666666677766665555443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.54  E-value=0.00014  Score=71.47  Aligned_cols=283  Identities=20%  Similarity=0.232  Sum_probs=185.4

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCC
Q 043116           77 EFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA  156 (482)
Q Consensus        77 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  156 (482)
                      +...+.. +-+|..|+.++-.+=.-+++....     ++..+-.+|.+.++.+.-.|+.++-.+|-+.   -+.+  .+-
T Consensus       150 ~~~~D~s-~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPer---ldLI--Hkn  218 (968)
T KOG1060|consen  150 KAVTDPS-PYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPER---LDLI--HKN  218 (968)
T ss_pred             HHhcCCc-HHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchhH---HHHh--hHH
Confidence            4445666 899999999999998777777663     3566777899999999999999999998332   2222  224


Q ss_pred             hHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCC----------------------------ChhhhhhHHHHHHHHhc
Q 043116          157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQP----------------------------PFNQIRPALRVLAQLIR  207 (482)
Q Consensus       157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~----------------------------~~~~~~~~~~~L~~ll~  207 (482)
                      ...+++++.+ -+.=-+......|..-++.. +..                            ......-+++..-.++.
T Consensus       219 yrklC~ll~d-vdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~  297 (968)
T KOG1060|consen  219 YRKLCRLLPD-VDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQ  297 (968)
T ss_pred             HHHHHhhccc-hhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHh
Confidence            5566666632 22212223334444334432 111                            01112346666777888


Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116          208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL  287 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~  287 (482)
                      +.++.+...++.+...++...  ...     .++..|+.+|.++ ..++.-.+..+..++...+....        |.+-
T Consensus       298 S~n~sVVmA~aql~y~lAP~~--~~~-----~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~--------P~lK  361 (968)
T KOG1060|consen  298 SRNPSVVMAVAQLFYHLAPKN--QVT-----KIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFE--------PHLK  361 (968)
T ss_pred             cCCcHHHHHHHhHHHhhCCHH--HHH-----HHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhh--------hhhh
Confidence            999999999999999999432  222     3567888888643 45777788888888765555422        2333


Q ss_pred             HHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116          288 GLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE  366 (482)
Q Consensus       288 ~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~  366 (482)
                      .+. .+.....++.--..+|.+++...  .+.     .+++.+..++.+.+.++...++.+|+.++.... .     +..
T Consensus       362 sFfv~ssDp~~vk~lKleiLs~La~es--ni~-----~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~~-s-----v~~  428 (968)
T KOG1060|consen  362 SFFVRSSDPTQVKILKLEILSNLANES--NIS-----EILRELQTYIKSSDRSFAAAAVKAIGRCASRIG-S-----VTD  428 (968)
T ss_pred             ceEeecCCHHHHHHHHHHHHHHHhhhc--cHH-----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHhhC-c-----hhh
Confidence            332 23313456666677888887521  111     255667777777777788888888888876321 1     233


Q ss_pred             CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          367 GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       367 ~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      .++..|+.++++.+..|+..+...+..++...+.
T Consensus       429 tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~  462 (968)
T KOG1060|consen  429 TCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPA  462 (968)
T ss_pred             HHHHHHHHHHhcccchhHHHHHHHHHHHHhhChH
Confidence            4788899999999988998899999999876554

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.49  E-value=3.6e-06  Score=63.95  Aligned_cols=153  Identities=11%  Similarity=0.060  Sum_probs=122.0

Q ss_pred             chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116          282 ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK  361 (482)
Q Consensus       282 ~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~  361 (482)
                      .+..|+.-.....+.+.+.....-|+|++. +|.+...+.+.++++.+++.+..++..+...++.+|||++.  ++.+.+
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~--d~~n~~   93 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL--DKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc--ChHHHH
Confidence            455666666655588899998888999875 57778889999999999999999999999999999999998  788899


Q ss_pred             HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHH
Q 043116          362 HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMS  441 (482)
Q Consensus       362 ~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a  441 (482)
                      .+.+.+.++.++..++++...++..++..+..+...++..            +..+-.-..++.++.+..+.+-+.+..|
T Consensus        94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~------------r~ell~p~Vv~~v~r~~~s~s~~~rnLa  161 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTE------------RDELLSPAVVRTVQRWRESKSHDERNLA  161 (173)
T ss_pred             HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccch------------hHHhccHHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999999999999999888888887777665433332            4445455667777777777777777788


Q ss_pred             HHHHHHhc
Q 043116          442 VKILETYW  449 (482)
Q Consensus       442 ~~~l~~~~  449 (482)
                      ...++...
T Consensus       162 ~~fl~~~~  169 (173)
T KOG4646|consen  162 SAFLDKHV  169 (173)
T ss_pred             HHHHHhhc
Confidence            77776543

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.48  E-value=0.0012  Score=64.34  Aligned_cols=302  Identities=14%  Similarity=0.094  Sum_probs=164.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCChHhHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY-PQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      +..+.+-|.|.|+..+..|+.++.++.+.+   ..+.+.     +-+-++|-++++ +-++..|+-||..+.+.+|+...
T Consensus       113 in~iknDL~srn~~fv~LAL~~I~niG~re---~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~~  184 (938)
T KOG1077|consen  113 INSIKNDLSSRNPTFVCLALHCIANIGSRE---MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLVN  184 (938)
T ss_pred             HHHHHhhhhcCCcHHHHHHHHHHHhhccHh---HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccccC
Confidence            455556666888888889999999987653   222222     223355555442 56888899999999887766432


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH------------HHHHhC---------C------hHHH
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD------------FVLSQG---------A------LIPL  160 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~------------~~~~~~---------~------i~~l  160 (482)
                         ..+....++.+|.+.+-.+...+...+..++...++...            .+...|         .      .-.+
T Consensus       185 ---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl  261 (938)
T KOG1077|consen  185 ---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKL  261 (938)
T ss_pred             ---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHH
Confidence               223456667777665544444444444444433222110            000000         0      0122


Q ss_pred             HHHHc---chhhhhHHHHHHHHH---HHhhcCCCC-------------------------CChhhhhhHHHHHHHHhccC
Q 043116          161 LAELN---EHAKLSMLRTATWTL---SNFCRGKPQ-------------------------PPFNQIRPALRVLAQLIRSN  209 (482)
Q Consensus       161 ~~~l~---~~~~~~~~~~a~~~L---~~L~~~~~~-------------------------~~~~~~~~~~~~L~~ll~~~  209 (482)
                      +++|.   ...|+..+.....++   .|.....|.                         ........++..|.+++.+.
T Consensus       262 ~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r  341 (938)
T KOG1077|consen  262 LRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR  341 (938)
T ss_pred             HHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc
Confidence            33331   112333333322222   222222111                         11222345555666666666


Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH
Q 043116          210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG  288 (482)
Q Consensus       210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~  288 (482)
                      .+.+|.-++..++.++.... ..+.+...  .+.++..|+ ..+.++|..|+..|..+|.  .+..+     .++..+++
T Consensus       342 E~NiRYLaLEsm~~L~ss~~-s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD--~~Nak-----~IV~elLq  411 (938)
T KOG1077|consen  342 ETNIRYLALESMCKLASSEF-SIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCD--VSNAK-----QIVAELLQ  411 (938)
T ss_pred             cccchhhhHHHHHHHHhccc-hHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhc--hhhHH-----HHHHHHHH
Confidence            77777777777777774422 22222222  567777777 6788999999999999885  33333     24566888


Q ss_pred             HhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH--------------HcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVI--------------DAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       289 ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~--------------~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      .|.+. ++.+|++.+.-++-++.........++              +.++...++++.. .+++++..|+..+.....
T Consensus       412 YL~tA-d~sireeivlKvAILaEKyAtDy~WyVdviLqLiriagd~vsdeVW~RvvQiVv-Nnedlq~yaak~~fe~Lq  488 (938)
T KOG1077|consen  412 YLETA-DYSIREEIVLKVAILAEKYATDYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVV-NNEDLQGYAAKRLFEYLQ  488 (938)
T ss_pred             HHhhc-chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccHHHHHHhheeEe-cchhhhHHHHHHHHHHHh
Confidence            88888 888998887766666652111011111              1223333333322 356777777776666654

>TIGR02270 conserved hypothetical protein

Probab=98.46  E-value=8e-05  Score=70.74  Aligned_cols=241  Identities=17%  Similarity=0.068  Sum_probs=156.4

Q ss_pred             cHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           28 ILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        28 ~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +++.++..+. .+++.+...++..+.   ... ..        ..+..++..|.+.+ +.++..++..|+.+-.      
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L~d~~-~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVLQAGP-EGLCAGIQAALGWLGG------  115 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHhcCCC-HHHHHHHHHHHhcCCc------
Confidence            3566666664 445655554444432   111 11        13777888888887 7788888888886633      


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                           .+..+.|+.++.+.++.++..++.+++....            ...+.+...+ ++.++.++..++.+|..+-..
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r~~------------~~~~~L~~~L-~d~d~~Vra~A~raLG~l~~~  177 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAHRH------------DPGPALEAAL-THEDALVRAAALRALGELPRR  177 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhhcc------------ChHHHHHHHh-cCCCHHHHHHHHHHHHhhccc
Confidence                 1356778888888888888877777766321            1234666677 577888888888888877653


Q ss_pred             CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116          187 KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI  266 (482)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  266 (482)
                                ..++.|...+.+.++.++..++.++..+..  +.         ....+..+...+.......+..++...
T Consensus       178 ----------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ----------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ----------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                      345567777888888888888888876643  21         123444433444443443333333332


Q ss_pred             hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 043116          267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAW  346 (482)
Q Consensus       267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~  346 (482)
                        ..+         ..++.|..+++++   .++..++++++.+-  ++.         .++.|++.+.+.  .++..|..
T Consensus       237 --~~~---------~a~~~L~~ll~d~---~vr~~a~~AlG~lg--~p~---------av~~L~~~l~d~--~~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA---ATRREALRAVGLVG--DVE---------AAPWCLEAMREP--PWARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh---hhHHHHHHHHHHcC--Ccc---------hHHHHHHHhcCc--HHHHHHHH
Confidence              112         3567788888776   38999999999774  333         677777777643  49999999


Q ss_pred             HHHHhhc
Q 043116          347 VISNATS  353 (482)
Q Consensus       347 aL~~l~~  353 (482)
                      ++..|+-
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            9999975

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>TIGR02270 conserved hypothetical protein

Probab=98.41  E-value=0.00019  Score=68.24  Aligned_cols=244  Identities=17%  Similarity=0.050  Sum_probs=166.5

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      ..++.++..+.....++++..++.++....  .+         ..+..|+..+.+.++.++..+..+|+.+-  .+.   
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~~---  117 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLG--GRQ---  117 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCC--chH---
Confidence            457888888854333777776666554331  11         13789999999999999999999999773  222   


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN  229 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~  229 (482)
                            ..+.|+..+ .+.++.++..++.++....           ....+.+..++++.++.++..++++|+.+...  
T Consensus       118 ------a~~~L~~~L-~~~~p~vR~aal~al~~r~-----------~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~--  177 (410)
T TIGR02270       118 ------AEPWLEPLL-AASEPPGRAIGLAALGAHR-----------HDPGPALEAALTHEDALVRAAALRALGELPRR--  177 (410)
T ss_pred             ------HHHHHHHHh-cCCChHHHHHHHHHHHhhc-----------cChHHHHHHHhcCCCHHHHHHHHHHHHhhccc--
Confidence                  355677777 6777788877776666521           12356788888899999999999999987743  


Q ss_pred             HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116          230 DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI  309 (482)
Q Consensus       230 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl  309 (482)
                               ..++.|...+.+.++.|+..|+..++.+-.  +.         ....+..+.... .......+..++...
T Consensus       178 ---------~a~~~L~~al~d~~~~VR~aA~~al~~lG~--~~---------A~~~l~~~~~~~-g~~~~~~l~~~lal~  236 (410)
T TIGR02270       178 ---------LSESTLRLYLRDSDPEVRFAALEAGLLAGS--RL---------AWGVCRRFQVLE-GGPHRQRLLVLLAVA  236 (410)
T ss_pred             ---------cchHHHHHHHcCCCHHHHHHHHHHHHHcCC--Hh---------HHHHHHHHHhcc-CccHHHHHHHHHHhC
Confidence                     234567777899999999999999977643  22         233445434433 333444444444333


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116          310 TAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI  389 (482)
Q Consensus       310 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~  389 (482)
                        +.+         ..++.|..+++++  .++..++++++.+-.   +.         .++.|++.+.++.  +...+-.
T Consensus       237 --~~~---------~a~~~L~~ll~d~--~vr~~a~~AlG~lg~---p~---------av~~L~~~l~d~~--~aR~A~e  289 (410)
T TIGR02270       237 --GGP---------DAQAWLRELLQAA--ATRREALRAVGLVGD---VE---------AAPWCLEAMREPP--WARLAGE  289 (410)
T ss_pred             --Cch---------hHHHHHHHHhcCh--hhHHHHHHHHHHcCC---cc---------hHHHHHHHhcCcH--HHHHHHH
Confidence              223         3667777777754  489999999997754   22         5778888777544  8888999


Q ss_pred             HHHHHHHh
Q 043116          390 GLENILKV  397 (482)
Q Consensus       390 ~L~~l~~~  397 (482)
                      ++.+|.-.
T Consensus       290 A~~~ItG~  297 (410)
T TIGR02270       290 AFSLITGM  297 (410)
T ss_pred             HHHHhhCC
Confidence            99998753

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=9.3e-06  Score=77.89  Aligned_cols=249  Identities=15%  Similarity=0.146  Sum_probs=162.5

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH---HHHHHhhcCC---CC
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT---WTLSNFCRGK---PQ  189 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~---~~L~~L~~~~---~~  189 (482)
                      ..+..+..+.+..++.+|+.++..+.... ...+.     .......++ .+.+..++..|+   |.+.|.+-..   ..
T Consensus       201 ~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~l-sD~~e~VR~aAvqlv~v~gn~~p~~~e~e~  273 (823)
T KOG2259|consen  201 RGLIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHL-SDDYEDVRKAAVQLVSVWGNRCPAPLERES  273 (823)
T ss_pred             HHHHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHh-cchHHHHHHHHHHHHHHHHhcCCCcccchh
Confidence            33777778888888888888888887532 22222     233456667 666778887765   4455555211   22


Q ss_pred             CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhh-
Q 043116          190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIV-  267 (482)
Q Consensus       190 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~-  267 (482)
                      ........++..+++.+.+-+..++..+..+|+.+-..+.+......+..++..+-..-. +..+.    .+..=+..+ 
T Consensus       274 ~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk----~l~s~GewSs  349 (823)
T KOG2259|consen  274 EEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPK----ALYSSGEWSS  349 (823)
T ss_pred             hhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchH----HHHhcCCccc
Confidence            233345788999999999999999999999999988777777666666554443322111 11111    110000000 


Q ss_pred             ----------cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043116          268 ----------TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE  337 (482)
Q Consensus       268 ----------~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  337 (482)
                                ...++....++.+|.--.++.-+++. -.+||..|+..++.++..+|....     ..+..|++++.++.
T Consensus       350 Gk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE-f~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~  423 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE-FYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEI  423 (823)
T ss_pred             CccccccCchhhccccccccccccccceeeeechHH-HHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHH
Confidence                      01223345577888888899999988 889999999999999986666332     25778899999999


Q ss_pred             hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHH
Q 043116          338 FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL  388 (482)
Q Consensus       338 ~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l  388 (482)
                      ..+|..|+.+|..++.+..       +++..++.+...+.+.+++++...-
T Consensus       424 ~~VRL~ai~aL~~Is~~l~-------i~eeql~~il~~L~D~s~dvRe~l~  467 (823)
T KOG2259|consen  424 EVVRLKAIFALTMISVHLA-------IREEQLRQILESLEDRSVDVREALR  467 (823)
T ss_pred             HHHHHHHHHHHHHHHHHhe-------ecHHHHHHHHHHHHhcCHHHHHHHH
Confidence            9999999999999887431       1222355555555555555554433

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=98.40  E-value=0.00016  Score=73.19  Aligned_cols=385  Identities=15%  Similarity=0.098  Sum_probs=243.0

Q ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           30 PTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        30 ~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      -.++..+. .+-.+.+..+...+.........    ..+....-+..-++.++.+ +.++..++.-+++++..-+...  
T Consensus       200 v~l~~~l~~~d~~~sr~sacglf~~~~~~~~~----~~vk~elr~~~~~lc~d~~-~~Vr~~~a~~l~~~a~~~~~~~--  272 (759)
T KOG0211|consen  200 VPLLKRLATGDWFQSRLSACGLFGKLYVSLPD----DAVKRELRPIVQSLCQDDT-PMVRRAVASNLGNIAKVLESEI--  272 (759)
T ss_pred             HHHHHHccchhhhhcchhhhhhhHHhccCCCh----HHHHHHHHHHHHhhccccc-hhhHHHHHhhhHHHHHHHHHHH--
Confidence            33444444 44466777788888888777521    3345556777778888888 9999999999999988544432  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC--CCh-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHH------
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG--DSS-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWT------  179 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~--~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~------  179 (482)
                       ...++++.+..+..+....+|..|...+.++..  ..+ ....     .+.+.+++.. .+.+..+.......      
T Consensus       273 -~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~-----~~~~~l~~~~-~d~~~~v~~~~~~~~~~L~~  345 (759)
T KOG0211|consen  273 -VKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVK-----SLTESLVQAV-EDGSWRVSYMVADKFSELSS  345 (759)
T ss_pred             -HHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhh-----hhhHHHHHHh-cChhHHHHHHHhhhhhhHHH
Confidence             345789999999999999999999988887762  222 1111     1333444444 22222222111111      


Q ss_pred             ---------------------------------HHHhhcCCC--CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116          180 ---------------------------------LSNFCRGKP--QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL  224 (482)
Q Consensus       180 ---------------------------------L~~L~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l  224 (482)
                                                       ...++...+  .........++|.+..+..+.+..++...+.....+
T Consensus       346 ~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~  425 (759)
T KOG0211|consen  346 AVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGL  425 (759)
T ss_pred             HhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhcccccc
Confidence                                             111111110  001112234456666666677777777766666665


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHH
Q 043116          225 ADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW  304 (482)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~  304 (482)
                      ..-.+..  .. -....+.+...+++..+.++.+..+.+..+-..++..-........++.+..+-... ..+++.+..+
T Consensus       426 ~p~~~k~--~t-i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~-~wRvr~ail~  501 (759)
T KOG0211|consen  426 SPILPKE--RT-ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDL-LWRVRLAILE  501 (759)
T ss_pred             CccCCcC--cC-ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccch-hHHHHHHHHH
Confidence            5322200  00 013567777788888999999998877766654544434455557788888888877 7889999888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHH
Q 043116          305 IISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIV  384 (482)
Q Consensus       305 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~  384 (482)
                      .+-.++....   ..+++...-+.+...+.+....+++.|+..+..++..-...   + .....++.+..+..+++...+
T Consensus       502 ~ip~la~q~~---~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~---w-~~~~~i~k~L~~~~q~~y~~R  574 (759)
T KOG0211|consen  502 YIPQLALQLG---VEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSE---W-ARLEEIPKLLAMDLQDNYLVR  574 (759)
T ss_pred             HHHHHHHhhh---hHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcc---h-hHHHhhHHHHHHhcCcccchh
Confidence            8888876322   23333334444555556667789999999888887532211   1 122357777777777788888


Q ss_pred             HHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116          385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       385 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  454 (482)
                      ...+.++..+.......          .+++     ..++.+.++..++.+.|+-.+.+.+..+......
T Consensus       575 ~t~l~si~~la~v~g~e----------i~~~-----~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~  629 (759)
T KOG0211|consen  575 MTTLFSIHELAEVLGQE----------ITCE-----DLLPVFLDLVKDPVANVRINVAKHLPKILKLLDE  629 (759)
T ss_pred             hHHHHHHHHHHHHhccH----------HHHH-----HHhHHHHHhccCCchhhhhhHHHHHHHHHhhcch
Confidence            88888888777654332          1233     3478888999999999999999999887766544

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.40  E-value=0.0011  Score=64.15  Aligned_cols=348  Identities=14%  Similarity=0.121  Sum_probs=201.0

Q ss_pred             HHHHHHHhcCCCH---HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           29 LPTMVAGVWSDDN---KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        29 i~~l~~~l~s~~~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      +|.++..|...++   ......+.+|..++...  .-.+. +...++..+-...+.+.+.+....++.++.++.....+.
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~-~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~   77 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALSTSP--QILET-LSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED   77 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHH-HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence            4778888875543   55677899999998763  22222 222555666555554444677777788888776533222


Q ss_pred             H-----HHHHhCCChHHHHHhhCC-----C--CHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHc-------
Q 043116          106 T-----KVAIDHGAVPIFVKLLAS-----P--SDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELN-------  165 (482)
Q Consensus       106 ~-----~~~~~~g~i~~L~~ll~~-----~--~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~-------  165 (482)
                      .     ....+..+++.+.+....     .  ++.+...+...+..++..-+. -++.+     +..+.....       
T Consensus        78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~-----~~~~~~lf~~~~~~~~  152 (415)
T PF12460_consen   78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEI-----LDELYSLFLSPKSFSP  152 (415)
T ss_pred             cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHH-----HHHHHHHHccccccCC
Confidence            2     333344477777775532     1  245555566666666543332 22222     223333332       


Q ss_pred             ---chh-hhhHHHHHHHHH-HHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCC--cHHHHHHHH
Q 043116          166 ---EHA-KLSMLRTATWTL-SNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGT--NDKIQAVIE  237 (482)
Q Consensus       166 ---~~~-~~~~~~~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~--~~~~~~~~~  237 (482)
                         ... ...........+ .-++.-++..........+..++.+.. ..++..+..++.+++.++-.-  ++..+    
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~----  228 (415)
T PF12460_consen  153 FQPSSSTISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLD----  228 (415)
T ss_pred             CCccccccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHH----
Confidence               000 001112222222 222222333333344567777777754 456888899999999888442  22111    


Q ss_pred             hCcHHHHHHhh-CCCChhhHHHHHHHHhHhh----cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116          238 AGVCPRLVKLL-GHRSRLVLTAALRTIGNIV----TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG  312 (482)
Q Consensus       238 ~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~----~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  312 (482)
                       +++..+.... ....+..+..++.++..++    ........     .++..++.++.+   +++...++..+.-+...
T Consensus       229 -~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~~~L~~lL~~---~~~g~~aA~~f~il~~d  299 (415)
T PF12460_consen  229 -EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELLDKLLELLSS---PELGQQAAKAFGILLSD  299 (415)
T ss_pred             -HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHHHHHHHHhCC---hhhHHHHHHHHhhHhcC
Confidence             2333444333 3334444445544444333    22222222     256678888876   46778888888888765


Q ss_pred             CHH--------HHHHHHHcC----ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 043116          313 NRE--------QIQAVIDAG----LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD  380 (482)
Q Consensus       313 ~~~--------~~~~l~~~~----~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  380 (482)
                      .++        .++.+.+..    ++|.|++-....+.+.+.....||.++..+-+...... .-...++.|++-++.+|
T Consensus       300 ~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~-~l~~LlPLLlqsL~~~~  378 (415)
T PF12460_consen  300 SDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLP-ELPTLLPLLLQSLSLPD  378 (415)
T ss_pred             cHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHH-HHHHHHHHHHHHhCCCC
Confidence            233        233344333    57777777777777789999999999998755433222 22358999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhc
Q 043116          381 PQIVTVCLIGLENILKVG  398 (482)
Q Consensus       381 ~~v~~~~l~~L~~l~~~~  398 (482)
                      ++++..++.+|..+++..
T Consensus       379 ~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  379 ADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHHHHHHHHHHcC
Confidence            999999999999999754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00037  Score=73.51  Aligned_cols=316  Identities=15%  Similarity=0.121  Sum_probs=188.9

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH
Q 043116           41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK  120 (482)
Q Consensus        41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  120 (482)
                      ..-+.-|+.-+..++... .+..+ -.-..++|.|.++=-+++ +.+|.....+...+..++....+...+ .++.-|+.
T Consensus       971 wnSk~GaAfGf~~i~~~a-~~kl~-p~l~kLIPrLyRY~yDP~-~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~ 1046 (1702)
T KOG0915|consen  971 WNSKKGAAFGFGAIAKQA-GEKLE-PYLKKLIPRLYRYQYDPD-KKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLV 1046 (1702)
T ss_pred             hhcccchhhchHHHHHHH-HHhhh-hHHHHhhHHHhhhccCCc-HHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHH
Confidence            344445555555555543 11111 112336777777766788 889988888888888766666666654 57788888


Q ss_pred             hhCCCCHHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHH---HHHHHHHhhcCC-C----CC
Q 043116          121 LLASPSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRT---ATWTLSNFCRGK-P----QP  190 (482)
Q Consensus       121 ll~~~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~---a~~~L~~L~~~~-~----~~  190 (482)
                      -+.+....+|+.++-+|..+..+.+.-  .+.+.  .....+++.+ ++-.+.++..   ++.+++.+|-.. .    ..
T Consensus      1047 ~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvm-DDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~ 1123 (1702)
T KOG0915|consen 1047 NLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVM-DDIKESVREAADKAARALSKLCVRICDVTNGAK 1123 (1702)
T ss_pred             hccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcccCCccc
Confidence            888888999999999999999776542  22222  2455556666 4545556554   566666666433 1    12


Q ss_pred             ChhhhhhHHHHHHHH-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhH-----------HH
Q 043116          191 PFNQIRPALRVLAQL-IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVL-----------TA  258 (482)
Q Consensus       191 ~~~~~~~~~~~L~~l-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~-----------~~  258 (482)
                      .......++|.|+.- +-+.-++++.-++..+..++......... .-...++.|+...+.-++.+.           .+
T Consensus      1124 ~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP-~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~e 1202 (1702)
T KOG0915|consen 1124 GKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKP-HFPKLIPLLLNAYSELEPQVLNYLSLRLINIETE 1202 (1702)
T ss_pred             HHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcc-hhhHHHHHHHHHccccchHHHHHHHHhhhhhHHH
Confidence            222335556655531 22556899999999999999776543221 112455555555554444332           22


Q ss_pred             HHHHHh-HhhcCChh--hHHHHH-------hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043116          259 ALRTIG-NIVTGDDF--QTQCII-------NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP  328 (482)
Q Consensus       259 a~~~L~-~l~~~~~~--~~~~l~-------~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  328 (482)
                      ++-.+. +.+.+.|.  .....+       -..++|.+.++++++-.-..|..++..++-++......+..+.. ..+..
T Consensus      1203 alDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sg-Kll~a 1281 (1702)
T KOG0915|consen 1203 ALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSG-KLLRA 1281 (1702)
T ss_pred             HHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchh-HHHHH
Confidence            222222 11222221  111111       11467778888877655566777777777776421111111111 24556


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043116          329 IVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR  365 (482)
Q Consensus       329 L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~  365 (482)
                      ++..+++.++.+++..+.|.+.++....+++.+.+++
T Consensus      1282 l~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie 1318 (1702)
T KOG0915|consen 1282 LFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIE 1318 (1702)
T ss_pred             HhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            6666678899999999999999999888888777554

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.37  E-value=0.0024  Score=62.38  Aligned_cols=346  Identities=17%  Similarity=0.130  Sum_probs=189.2

Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHH
Q 043116           76 VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLS  153 (482)
Q Consensus        76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~  153 (482)
                      .+=|.+.+ +.-...|+.+++|+..  .+.+..+.     +-+-++|-+++  +-++..|+-+|..+.+..|..   +-.
T Consensus       117 knDL~srn-~~fv~LAL~~I~niG~--re~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~  185 (938)
T KOG1077|consen  117 KNDLSSRN-PTFVCLALHCIANIGS--REMAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNP  185 (938)
T ss_pred             HhhhhcCC-cHHHHHHHHHHHhhcc--HhHHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cCh
Confidence            33344555 6677788888888854  55555443     22335555433  567888888888888666543   222


Q ss_pred             hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-------------cCChhHHHHHHHH
Q 043116          154 QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-------------SNDEKVLTDACRA  220 (482)
Q Consensus       154 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-------------~~~~~~~~~~l~~  220 (482)
                      .+....++.+| ++.+..+.-.+...+..|+...|..-.......+..|..+..             -+.|-.+..+++.
T Consensus       186 ~~W~~riv~LL-~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rl  264 (938)
T KOG1077|consen  186 GEWAQRIVHLL-DDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRL  264 (938)
T ss_pred             hhHHHHHHHHh-CccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHH
Confidence            24566777777 555566666677777777766543332222222222222221             1356677778888


Q ss_pred             HHHhccCCcHHHHHHHHhCcHHHHHHhhCCC----Ch---hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116          221 LAYLADGTNDKIQAVIEAGVCPRLVKLLGHR----SR---LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN  293 (482)
Q Consensus       221 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~----~~---~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  293 (482)
                      |.+.-...+..... .-..+++.++...+.+    +.   ..+...+.-.-+++.+-+..-..+.  ..+..|-++|.+.
T Consensus       265 Lq~~p~~~D~~~r~-~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~r  341 (938)
T KOG1077|consen  265 LQIYPTPEDPSTRA-RLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSHR  341 (938)
T ss_pred             HHhCCCCCCchHHH-HHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhcc
Confidence            87775332221111 1112334444333311    11   1222233333344433332222222  3567788889888


Q ss_pred             CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 043116          294 HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPL  372 (482)
Q Consensus       294 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L  372 (482)
                       ...+|.-|...++.++...+.  ...++.. .+.++..|+ +.|..+++.|+..|..++..   ++++.     ++.-+
T Consensus       342 -E~NiRYLaLEsm~~L~ss~~s--~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~---~Nak~-----IV~el  409 (938)
T KOG1077|consen  342 -ETNIRYLALESMCKLASSEFS--IDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDV---SNAKQ-----IVAEL  409 (938)
T ss_pred             -cccchhhhHHHHHHHHhccch--HHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhch---hhHHH-----HHHHH
Confidence             888999999999999874222  2223322 667777777 78999999999999999864   44444     45667


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhc---hHHHHHHhh--cCCCHHHHHHHHHHHHH
Q 043116          373 CDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE---GLEKIENLQ--SHDNNDIHEMSVKILET  447 (482)
Q Consensus       373 ~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~l~~l~--~~~~~~v~~~a~~~l~~  447 (482)
                      ++.+.+.++.+++-..--..-+.   ++... +..+.++...+.++-.|   .-+.+..+.  -..+++++..|.+-+-.
T Consensus       410 LqYL~tAd~sireeivlKvAILa---EKyAt-Dy~WyVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~yaak~~fe  485 (938)
T KOG1077|consen  410 LQYLETADYSIREEIVLKVAILA---EKYAT-DYSWYVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQGYAAKRLFE  485 (938)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHH---HHhcC-CcchhHHHHHHHHHHhcccccHHHHHHhheeEecchhhhHHHHHHHHH
Confidence            77777788776664332222222   22111 00122333333333322   112222221  23467888777776666


Q ss_pred             hcCCC
Q 043116          448 YWCGR  452 (482)
Q Consensus       448 ~~~~~  452 (482)
                      |....
T Consensus       486 ~Lq~~  490 (938)
T KOG1077|consen  486 YLQKP  490 (938)
T ss_pred             HHhhh
Confidence            65544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.35  E-value=0.0001  Score=70.94  Aligned_cols=222  Identities=12%  Similarity=0.125  Sum_probs=148.5

Q ss_pred             HHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC-----cHHHHH
Q 043116          160 LLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT-----NDKIQA  234 (482)
Q Consensus       160 l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~-----~~~~~~  234 (482)
                      +..+. .+.|..++..|+..+..|....     ..-..+....++++.+.+..++..|+..+.-.....     .+..+.
T Consensus       203 l~~~~-~~~D~~Vrt~A~eglL~L~eg~-----kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLE-HDQDFRVRTHAVEGLLALSEGF-----KLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHh-cCCCcchHHHHHHHHHhhcccc-----cccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            55555 7778888888888888777632     222456667788999999999999877766544222     111111


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---
Q 043116          235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA---  311 (482)
Q Consensus       235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---  311 (482)
                      -.....+..+...+.+.+..||..|...|+.+-.-+++.....++..++..+-..=...+.+    .+.+.=+..++   
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrp----k~l~s~GewSsGk~  352 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRP----KALYSSGEWSSGKE  352 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccch----HHHHhcCCcccCcc
Confidence            12225678889999999999999999999988765666555555544444222111111011    11111111111   


Q ss_pred             --------CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHH
Q 043116          312 --------GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI  383 (482)
Q Consensus       312 --------~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  383 (482)
                              ...+.-..++..|.-..++.-+.++-.+||.+|...++.++.. .|.+...     .++.|++++.++...|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~s-sP~FA~~-----aldfLvDMfNDE~~~V  426 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATS-SPGFAVR-----ALDFLVDMFNDEIEVV  426 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcC-CCCcHHH-----HHHHHHHHhccHHHHH
Confidence                    1122234577788888888888888899999999999999985 4444333     7899999999999999


Q ss_pred             HHHHHHHHHHHHHh
Q 043116          384 VTVCLIGLENILKV  397 (482)
Q Consensus       384 ~~~~l~~L~~l~~~  397 (482)
                      +.+++.+|..+...
T Consensus       427 RL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  427 RLKAIFALTMISVH  440 (823)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999865

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.35  E-value=0.00016  Score=67.91  Aligned_cols=240  Identities=14%  Similarity=0.134  Sum_probs=173.2

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCChhh
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQ  273 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~  273 (482)
                      ....+.+..++-+++.+++..+.++++.+.... ...+.+.+.++--.++..|..+  +..-|..|++.+..+.......
T Consensus        24 ~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~  102 (371)
T PF14664_consen   24 SFFGERIQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGP  102 (371)
T ss_pred             HHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCc
Confidence            445555555555556999999999999998654 4566677777656666666443  4457889999999888753221


Q ss_pred             HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                       + .+..+++..++.+.++. +...+..+..+|+.++-.+|+   .+...|++..|++.+.++..++....+.++..+..
T Consensus       103 -~-~~~~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd  176 (371)
T PF14664_consen  103 -K-EIPRGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGSFSISESLLDTLLYLLD  176 (371)
T ss_pred             -c-cCCHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence             1 23457899999999998 888999999999999987777   55688999999999998877788899999999987


Q ss_pred             CCCHHHHHHHHHcCChHHHHhcCCCC-------CH--HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          354 GGTHEQIKHLVREGCVKPLCDLLPCP-------DP--QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       354 ~~~~~~~~~l~~~~~l~~L~~ll~~~-------~~--~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                        +|..++++...--++.+..-+.+.       +.  +-...+..++..+++..+..-..           ......+++
T Consensus       177 --~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l-----------~~~~~~~lk  243 (371)
T PF14664_consen  177 --SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYL-----------SMNDFRGLK  243 (371)
T ss_pred             --CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeee-----------ecCCchHHH
Confidence              566666655543455555544322       22  35566778888888765443211           112224667


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      .|.+.+..+++++++....++-..|.-...+
T Consensus       244 sLv~~L~~p~~~ir~~Ildll~dllrik~p~  274 (371)
T PF14664_consen  244 SLVDSLRLPNPEIRKAILDLLFDLLRIKPPS  274 (371)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHCCCCCC
Confidence            7777888999999999999999988866553

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.35  E-value=0.00024  Score=68.95  Aligned_cols=264  Identities=16%  Similarity=0.121  Sum_probs=171.0

Q ss_pred             HHHHHHhcCCCCCcHHHHHhcCCHHHHHHhh---------cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116           49 TLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL---------MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV  119 (482)
Q Consensus        49 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll---------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  119 (482)
                      ..|.-++..  ......+.....+..|.++-         ....++++...|++||+|+.-.++..|+.+.+.|+.+.++
T Consensus         3 ~~LRiLsRd--~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    3 ETLRILSRD--PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHccC--cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            344444443  33455566555666666655         2233379999999999999999999999999999999999


Q ss_pred             HhhCCC-----CHHHHHHHHHHHHHhhCCChhhHHHHHHh-CChHHHHHHHcch----------------hhhhHHHHHH
Q 043116          120 KLLASP-----SDDVREQAVWALGNVAGDSSRCRDFVLSQ-GALIPLLAELNEH----------------AKLSMLRTAT  177 (482)
Q Consensus       120 ~ll~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~----------------~~~~~~~~a~  177 (482)
                      +.++..     +.++.....+.|.-++...+..+..+.+. +++..+...+..+                .+......++
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiL  160 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEIL  160 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHH
Confidence            999875     67888888888888887666666555544 6777776666321                1345567788


Q ss_pred             HHHHHhhcCCCCCChh----hhhhHHHHHHHHh---cc--CChhHHHHHHHHHHHhccCCcHH-------HH----HHHH
Q 043116          178 WTLSNFCRGKPQPPFN----QIRPALRVLAQLI---RS--NDEKVLTDACRALAYLADGTNDK-------IQ----AVIE  237 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~~----~~~~~~~~L~~ll---~~--~~~~~~~~~l~~L~~l~~~~~~~-------~~----~~~~  237 (482)
                      .++.|++...+.....    ....++..+..++   ..  +......+++.+|.++--.....       ..    ...+
T Consensus       161 KllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~  240 (446)
T PF10165_consen  161 KLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDN  240 (446)
T ss_pred             HHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCC
Confidence            9999998876544332    2344555555552   11  22456778888888773211110       00    0011


Q ss_pred             hCcHHHHHHhhCC-----C---ChhhHHHHHHHHhHhhcCChhhHHHHH----------------hcCchHHHHHHhcCC
Q 043116          238 AGVCPRLVKLLGH-----R---SRLVLTAALRTIGNIVTGDDFQTQCII----------------NCGALRYLLGLLIHN  293 (482)
Q Consensus       238 ~~~l~~L~~ll~~-----~---~~~v~~~a~~~L~~l~~~~~~~~~~l~----------------~~~~i~~L~~ll~~~  293 (482)
                      ...+..++.+|..     .   -.......+.+|.+++..+...++.+.                ...+-..|+.++.+.
T Consensus       241 ~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~  320 (446)
T PF10165_consen  241 MDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSP  320 (446)
T ss_pred             hHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCC
Confidence            2345555555522     1   124566678888888876654444332                124567799999999


Q ss_pred             CchhHHHHHHHHHHHHhcCCHH
Q 043116          294 HNKSIKKEVCWIISNITAGNRE  315 (482)
Q Consensus       294 ~~~~v~~~a~~~L~nl~~~~~~  315 (482)
                       .+.+|..++..+-.+|..+..
T Consensus       321 -~~~~k~~vaellf~Lc~~d~~  341 (446)
T PF10165_consen  321 -DPQLKDAVAELLFVLCKEDAS  341 (446)
T ss_pred             -CchHHHHHHHHHHHHHhhhHH
Confidence             699999999999888865444

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.32  E-value=1e-05  Score=61.54  Aligned_cols=114  Identities=16%  Similarity=0.120  Sum_probs=96.8

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      .+..|+.-.+...+.+.+++...-|+|.+. +|.+-..+.+.+++..++..+..++..+.+.++..|+|+|-+. ...+.
T Consensus        17 Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~-~n~~~   94 (173)
T KOG4646|consen   17 YLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDK-TNAKF   94 (173)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccCh-HHHHH
Confidence            455566555554448999999999999988 7888899999999999999999999999999999999999664 45788


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      +.+.++++.++..+ .++...+...++.++..|+...
T Consensus        95 I~ea~g~plii~~l-ssp~e~tv~sa~~~l~~l~~~~  130 (173)
T KOG4646|consen   95 IREALGLPLIIFVL-SSPPEITVHSAALFLQLLEFGE  130 (173)
T ss_pred             HHHhcCCceEEeec-CCChHHHHHHHHHHHHHhcCcc
Confidence            89999999999999 6667778888899999998875

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.32  E-value=5.7e-05  Score=66.32  Aligned_cols=230  Identities=16%  Similarity=0.181  Sum_probs=155.4

Q ss_pred             hhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC-ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHH-H
Q 043116           78 FLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG-AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVL-S  153 (482)
Q Consensus        78 ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g-~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~  153 (482)
                      +++.-+ +-.+.-|+.|+.++.. .++.|......+ .-..+.+.+++  ++..++.+.+.+++.++... .+.+.+- .
T Consensus       157 l~Q~i~-~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~-~~aqdi~K~  233 (432)
T COG5231         157 LSQLID-FLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSK-ECAQDIDKM  233 (432)
T ss_pred             HHHHHH-HHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCH-HHHHHHHHH
Confidence            334444 5678889999999987 678887666443 45677777775  56788999999999998554 3432222 2


Q ss_pred             hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh--hhhh-HHHHHHHHhc--cCChhHHHHHHHHHHHhccC-
Q 043116          154 QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN--QIRP-ALRVLAQLIR--SNDEKVLTDACRALAYLADG-  227 (482)
Q Consensus       154 ~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--~~~~-~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~-  227 (482)
                      ...+..++.+++....+.+.+-++.++.|++...|.....  ...+ +.+++-.++.  -.|++++...-+.=..+... 
T Consensus       234 ~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~  313 (432)
T COG5231         234 DDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNT  313 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh
Confidence            2357777888877778889999999999999955332222  2233 3433333333  23444444432222211111 


Q ss_pred             --------------------Cc---------HHHHHHHHh--CcHHHHHHhhCCCChh-hHHHHHHHHhHhhcCChhhHH
Q 043116          228 --------------------TN---------DKIQAVIEA--GVCPRLVKLLGHRSRL-VLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       228 --------------------~~---------~~~~~~~~~--~~l~~L~~ll~~~~~~-v~~~a~~~L~~l~~~~~~~~~  275 (482)
                                          ++         .+...+.+.  .++..|..+++..++. ...-||.=+..+.+..|+...
T Consensus       314 k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~  393 (432)
T COG5231         314 KKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINA  393 (432)
T ss_pred             hhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHH
Confidence                                00         112222222  5788888999887766 666789999999998899888


Q ss_pred             HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      .+.+.|+=+.++.+++++ +++||-+|..++..++.
T Consensus       394 vl~Kyg~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         394 VLSKYGVKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             HHHHhhhHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            888899999999999999 99999999999887764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.32  E-value=0.00035  Score=65.85  Aligned_cols=250  Identities=28%  Similarity=0.322  Sum_probs=172.3

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      ..++.+++.+.++++.++..+++.+..+....            .++.+..++.+.+ +.+|..|+.+|+.+-.  +   
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~-~~vr~~a~~aLg~~~~--~---  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDED-PRVRDAAADALGELGD--P---  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCC-HHHHHHHHHHHHccCC--h---
Confidence            57889999999889999999999976665432            6899999999999 8999999999888843  2   


Q ss_pred             HHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh-----------hhHHH
Q 043116          107 KVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK-----------LSMLR  174 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~-----------~~~~~  174 (482)
                            ..++.++.++. +++..+|..|.++|+.+-..  .         .+..++..+.+...           ..++.
T Consensus       105 ------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--~---------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~  167 (335)
T COG1413         105 ------EAVPPLVELLENDENEGVRAAAARALGKLGDE--R---------ALDPLLEALQDEDSGSAAAALDAALLDVRA  167 (335)
T ss_pred             ------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch--h---------hhHHHHHHhccchhhhhhhhccchHHHHHH
Confidence                  35788899888 69999999999999998422  1         25567777733221           12333


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh
Q 043116          175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL  254 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  254 (482)
                      .+...+..+-.          ....+.+..++.+.+..++..+..+|+.+....         ..+...+...+.+++..
T Consensus       168 ~a~~~l~~~~~----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         168 AAAEALGELGD----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHHHcCC----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            34444443322          346677888888888889999999888887554         23446788888888888


Q ss_pred             hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116          255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      ++..++..++.+-.  ..         ..+.+...+... +..++..+...+...  ...         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~--~~---------~~~~l~~~l~~~-~~~~~~~~~~~~~~~--~~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGD--EE---------AVDALAKALEDE-DVILALLAAAALGAL--DLA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCc--ch---------hHHHHHHHHhcc-chHHHHHHHHHhccc--Cch---------hhHHHHHHHhh
Confidence            99888888876643  11         344566777776 666665555554411  111         12334444555


Q ss_pred             cCChhHHHHHHHHHHHhhc
Q 043116          335 DAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       335 ~~~~~~~~~a~~aL~~l~~  353 (482)
                      +....++..+..++..+..
T Consensus       286 ~~~~~~~~~~~~~l~~~~~  304 (335)
T COG1413         286 DEANAVRLEAALALGQIGQ  304 (335)
T ss_pred             cchhhHHHHHHHHHHhhcc
Confidence            6666777777777776655

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.25  E-value=0.00041  Score=65.38  Aligned_cols=249  Identities=24%  Similarity=0.292  Sum_probs=174.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      ..++.+.+++.+++ ..++..+++.++.+..           ...++.+..++.+.++.+|..|+.+|+.+  ..+.   
T Consensus        43 ~~~~~~~~~l~~~~-~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~---  105 (335)
T COG1413          43 EAADELLKLLEDED-LLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL--GDPE---  105 (335)
T ss_pred             hhHHHHHHHHcCCC-HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc--CChh---
Confidence            36888999999997 8999999999777643           13689999999999999999999999888  3332   


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCCh------------hHHHHH
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDE------------KVLTDA  217 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~------------~~~~~~  217 (482)
                            .++.++..+..+.+..++..+.++|..+-...          .+..++..+.+...            .++..+
T Consensus       106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         106 ------AVPPLVELLENDENEGVRAAAARALGKLGDER----------ALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh----------hhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                  47788888855788889999999999876642          35566666665542            344445


Q ss_pred             HHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh
Q 043116          218 CRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS  297 (482)
Q Consensus       218 l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  297 (482)
                      ...+..+..           ...++.+...+.+.+..++..+...|+.+...+         ..+.+.+...+.+. +..
T Consensus       170 ~~~l~~~~~-----------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~-~~~  228 (335)
T COG1413         170 AEALGELGD-----------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAADLLVKALSDE-SLE  228 (335)
T ss_pred             HHHHHHcCC-----------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCC-CHH
Confidence            555444432           134577888888888889999999998887644         23456778888888 888


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116          298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP  377 (482)
Q Consensus       298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  377 (482)
                      +|..++.+++.+-.  ..         .+..+...+.+.+..++..+..++...-   ..         .....+...+.
T Consensus       229 vr~~~~~~l~~~~~--~~---------~~~~l~~~l~~~~~~~~~~~~~~~~~~~---~~---------~~~~~l~~~~~  285 (335)
T COG1413         229 VRKAALLALGEIGD--EE---------AVDALAKALEDEDVILALLAAAALGALD---LA---------EAALPLLLLLI  285 (335)
T ss_pred             HHHHHHHHhcccCc--ch---------hHHHHHHHHhccchHHHHHHHHHhcccC---ch---------hhHHHHHHHhh
Confidence            99998888887743  22         4555666677777776666655555111   11         12344555566


Q ss_pred             CCCHHHHHHHHHHHHHHH
Q 043116          378 CPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       378 ~~~~~v~~~~l~~L~~l~  395 (482)
                      +.+..++......+..+-
T Consensus       286 ~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         286 DEANAVRLEAALALGQIG  303 (335)
T ss_pred             cchhhHHHHHHHHHHhhc
Confidence            666666666666665554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.24  E-value=2.6e-06  Score=52.04  Aligned_cols=40  Identities=45%  Similarity=0.875  Sum_probs=38.0

Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  141 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  141 (482)
                      ++++++.+++.|+++.|+++++++++++++.|+|+|+|++
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4788999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.23  E-value=0.0002  Score=62.99  Aligned_cols=239  Identities=16%  Similarity=0.167  Sum_probs=142.9

Q ss_pred             HHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          200 RVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       200 ~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      ..|-.+++.-++-.+.-|.+|+.++......+.-...+...-.+++.++++  +...++..++.+++-+.. ++...+.+
T Consensus       152 eyLgkl~Q~i~~lTrlfav~cl~~l~~~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi  230 (432)
T COG5231         152 EYLGKLSQLIDFLTRLFAVSCLSNLEFDVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDI  230 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHH
Confidence            344455555566678888899998885443332223333455677777765  456789999999998876 44433222


Q ss_pred             Hh-cCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhh
Q 043116          278 IN-CGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN-REQIQAVIDAGLIGPIVNLLQD---AEFGTKKEAAWVISNAT  352 (482)
Q Consensus       278 ~~-~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~  352 (482)
                      -+ ...+..++++.+..-...|-+-++.++.|++... ...+..+.-.|-+.+-++.|..   .|.+++...-..=..+.
T Consensus       231 ~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~  310 (432)
T COG5231         231 DKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLV  310 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            11 2567777888877656778889999999999833 3444444444444444555542   35554433222211111


Q ss_pred             cCC---------------------C--------HHHHHHHHHc--CChHHHHhcCCCCCHH-HHHHHHHHHHHHHHhchh
Q 043116          353 SGG---------------------T--------HEQIKHLVRE--GCVKPLCDLLPCPDPQ-IVTVCLIGLENILKVGEA  400 (482)
Q Consensus       353 ~~~---------------------~--------~~~~~~l~~~--~~l~~L~~ll~~~~~~-v~~~~l~~L~~l~~~~~~  400 (482)
                      ...                     +        ..+...+.+.  ..+..|..+++..++. ....|+.-+..+.+..+ 
T Consensus       311 ~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~P-  389 (432)
T COG5231         311 QNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASP-  389 (432)
T ss_pred             hhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCc-
Confidence            110                     0        1112222222  2355566666655544 23334444444444322 


Q ss_pred             ccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          401 EKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                                 +....+...|+-+.|-+|++|++++|+-.|.+.++.+...
T Consensus       390 -----------E~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~~  429 (432)
T COG5231         390 -----------EINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCISS  429 (432)
T ss_pred             -----------hHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHhh
Confidence                       2477788999999999999999999999999998877654

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.23  E-value=0.00021  Score=73.51  Aligned_cols=271  Identities=17%  Similarity=0.184  Sum_probs=173.9

Q ss_pred             cHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC---h
Q 043116           28 ILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT---S  103 (482)
Q Consensus        28 ~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~---~  103 (482)
                      .++.+..++++ .....+..|+..|..++..-.    .+..-..++|.++.++.++. .+||..|+.+|..+...-   +
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~----de~~LDRVlPY~v~l~~Ds~-a~Vra~Al~Tlt~~L~~Vr~~~  497 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYID----DEVKLDRVLPYFVHLLMDSE-ADVRATALETLTELLALVRDIP  497 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcc----hHHHHhhhHHHHHHHhcCch-HHHHHHHHHHHHHHHhhccCCC
Confidence            46677777764 347788999999999987642    22333458999999999999 899999999988876521   1


Q ss_pred             HhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhh---HHHHHHhC------------------------
Q 043116          104 ENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRC---RDFVLSQG------------------------  155 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~------------------------  155 (482)
                      ..-..+...=++|.|-.++.+ ....+|..-+.+|+.++...-.+   ...+...|                        
T Consensus       498 ~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~  577 (1431)
T KOG1240|consen  498 PSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHH  577 (1431)
T ss_pred             cccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHH
Confidence            111223333466888888877 44455555555555554211000   00000000                        


Q ss_pred             ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116          156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV  235 (482)
Q Consensus       156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~  235 (482)
                      .+...+.-|..++++-+++..+..|.-||..-  .......-+++.|+.+|++.|+..|..-...+..++-.-..+   -
T Consensus       578 ~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FF--Gk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r---s  652 (1431)
T KOG1240|consen  578 TVEQMVSSLLSDSPPIVKRALLESIIPLCVFF--GKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR---S  652 (1431)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh--hhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeee---e
Confidence            12222222224444556666666666666431  111122457788888999999998888888777666321111   1


Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      ++..++|.|..-|.++++-|...|++++.-|+...--....+.  .+++....+|-++ +.-+|..++..|..++.
T Consensus       653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence            3446788999999999999999999999999874332222232  3677778888899 99999999999988875

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=0.00082  Score=66.01  Aligned_cols=356  Identities=15%  Similarity=0.151  Sum_probs=200.0

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC
Q 043116           34 AGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG  113 (482)
Q Consensus        34 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  113 (482)
                      +-|+.+++-++=..++.|+++=..       +++ ..++|.+...|.+.+ +-+|..|..++..|-..    ...++. .
T Consensus       106 kDLQHPNEyiRG~TLRFLckLkE~-------ELl-epl~p~IracleHrh-sYVRrNAilaifsIyk~----~~~L~p-D  171 (948)
T KOG1058|consen  106 KDLQHPNEYIRGSTLRFLCKLKEP-------ELL-EPLMPSIRACLEHRH-SYVRRNAILAIFSIYKN----FEHLIP-D  171 (948)
T ss_pred             hhccCchHhhcchhhhhhhhcCcH-------HHh-hhhHHHHHHHHhCcc-hhhhhhhheeehhHHhh----hhhhcC-C
Confidence            334455555555555555444211       111 236677777888888 78888888888777552    112222 1


Q ss_pred             ChHHHHHh-hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc--chhhhhHHHHHHHHHHHhhcCCCCC
Q 043116          114 AVPIFVKL-LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN--EHAKLSMLRTATWTLSNFCRGKPQP  190 (482)
Q Consensus       114 ~i~~L~~l-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~--~~~~~~~~~~a~~~L~~L~~~~~~~  190 (482)
                      +-+.+-++ ....++..+++|.-.|...  + ++.        ++..+...+.  .+-+...+-..+..+...|...|. 
T Consensus       172 apeLi~~fL~~e~DpsCkRNAFi~L~~~--D-~Er--------Al~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~-  239 (948)
T KOG1058|consen  172 APELIESFLLTEQDPSCKRNAFLMLFTT--D-PER--------ALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPA-  239 (948)
T ss_pred             hHHHHHHHHHhccCchhHHHHHHHHHhc--C-HHH--------HHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHH-
Confidence            22222333 3456777777776666554  2 111        1222322221  122344555555666666654332 


Q ss_pred             ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 043116          191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTG  269 (482)
Q Consensus       191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~  269 (482)
                         .....+..+..+|.+.++.++..+..+|..++..... ....     ...++.++ +.++..++.-.+--|..+...
T Consensus       240 ---~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~a-lk~A-----a~~~i~l~~kesdnnvklIvldrl~~l~~~  310 (948)
T KOG1058|consen  240 ---EKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTA-LKAA-----ASTYIDLLVKESDNNVKLIVLDRLSELKAL  310 (948)
T ss_pred             ---HhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHH-HHHH-----HHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence               2245677888888888888999998888888854332 2111     12333333 223333443344444444432


Q ss_pred             ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHH
Q 043116          270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVI  348 (482)
Q Consensus       270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL  348 (482)
                      +....+     |.+-.++.+|.++ +-++|+.+......++. .+-+.+-.+++..+...--. =.+++...|...+.++
T Consensus       311 ~~~il~-----~l~mDvLrvLss~-dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLikti  383 (948)
T KOG1058|consen  311 HEKILQ-----GLIMDVLRVLSSP-DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTI  383 (948)
T ss_pred             hHHHHH-----HHHHHHHHHcCcc-cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHH
Confidence            332222     4566678888888 99999999988888876 44443333333222111110 0123445677788888


Q ss_pred             HHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHH
Q 043116          349 SNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN  428 (482)
Q Consensus       349 ~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  428 (482)
                      ..++.. -++.     ...+++.|++.+.+.++.....++..+...++..++.            +..+.    -..++.
T Consensus       384 h~cav~-Fp~~-----aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~p~L------------r~~ii----~~l~~~  441 (948)
T KOG1058|consen  384 HACAVK-FPEV-----AATVVSLLLDFISDSNEAAASDVLMFVREAIEKFPNL------------RASII----EKLLET  441 (948)
T ss_pred             HHHhhc-ChHH-----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhCchH------------HHHHH----HHHHHh
Confidence            888775 3343     3347899999999999988888888888877765543            22110    111222


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          429 LQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       429 l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      +-.-.+.++++-|.|++-.|...+.
T Consensus       442 ~~~irS~ki~rgalwi~GeYce~~~  466 (948)
T KOG1058|consen  442 FPQIRSSKICRGALWILGEYCEGLS  466 (948)
T ss_pred             hhhhcccccchhHHHHHHHHHhhhH
Confidence            2233466778888888888877765

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.22  E-value=0.00096  Score=63.57  Aligned_cols=378  Identities=13%  Similarity=0.121  Sum_probs=209.6

Q ss_pred             hhchhhhhhhccHHHHHHHh---------cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHH
Q 043116           17 ALSLNLQSKFEILPTMVAGV---------WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL   87 (482)
Q Consensus        17 ~~~~~~~~~~~~i~~l~~~l---------~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v   87 (482)
                      ..+++..+...++-.+-+.=         .+.++-.|.+|+..|..+-.++      .|.....++.+..-....+ ...
T Consensus       171 ~~~rw~ne~qeav~~l~q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~d------kma~lklv~hf~~n~smkn-q~a  243 (898)
T COG5240         171 QTKRWLNETQEAVLDLKQFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTD------KMAQLKLVEHFRGNASMKN-QLA  243 (898)
T ss_pred             HHHHHHHHHHHHHhhHhhCcCccCCcccCCCCChHHHHHHHHHHHHHhccc------HHHHHHHHHHhhccccccc-chh
Confidence            34455555554444443321         1345778899999888876553      1222223333333333333 333


Q ss_pred             HHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch
Q 043116           88 QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH  167 (482)
Q Consensus        88 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~  167 (482)
                      ....+++...+...+++.+..+     .|.|-..+++.-+.+.-.+++++..++..+-.  ..+.+ ..+..|-..| ..
T Consensus       244 ~V~lvr~~~~ll~~n~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~--~~~~~-~~vs~L~~fL-~s  314 (898)
T COG5240         244 GVLLVRATVELLKENSQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEENVG--SQFVD-QTVSSLRTFL-KS  314 (898)
T ss_pred             heehHHHHHHHHHhChHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhccC--HHHHH-HHHHHHHHHH-hc
Confidence            3444556666666566555433     46677778777778888888888888754411  11111 1344444455 56


Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116          168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL  247 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  247 (482)
                      +....+-.|..+|..|+...|.....    +-+-+-.++.+.+..+...|+..|..-.  .++.+..++.  .++.++.=
T Consensus       315 ~rv~~rFsA~Riln~lam~~P~kv~v----cN~evEsLIsd~Nr~IstyAITtLLKTG--t~e~idrLv~--~I~sfvhD  386 (898)
T COG5240         315 TRVVLRFSAMRILNQLAMKYPQKVSV----CNKEVESLISDENRTISTYAITTLLKTG--TEETIDRLVN--LIPSFVHD  386 (898)
T ss_pred             chHHHHHHHHHHHHHHHhhCCceeee----cChhHHHHhhcccccchHHHHHHHHHcC--chhhHHHHHH--HHHHHHHh
Confidence            66677888999999999876543322    2223445666777777777776665433  3444443332  23333333


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIG  327 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  327 (482)
                      ++++-..+...|++.|+..   .+....     ..+..|...|......+.++.+..++.......|+....     ++.
T Consensus       387 ~SD~FKiI~ida~rsLsl~---Fp~k~~-----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe  453 (898)
T COG5240         387 MSDGFKIIAIDALRSLSLL---FPSKKL-----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALE  453 (898)
T ss_pred             hccCceEEeHHHHHHHHhh---CcHHHH-----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHH
Confidence            3333334444455554443   443333     234556666555447788888888888888766664433     344


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCC
Q 043116          328 PIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNI  407 (482)
Q Consensus       328 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~  407 (482)
                      .|+..+.+.  +.-+.+...|+-+...++....    ....+..+..-+--++.-++..|+.+|.++.-....-      
T Consensus       454 ~LC~fIEDc--ey~~I~vrIL~iLG~EgP~a~~----P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~------  521 (898)
T COG5240         454 VLCTFIEDC--EYHQITVRILGILGREGPRAKT----PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV------  521 (898)
T ss_pred             HHHHHHhhc--chhHHHHHHHHHhcccCCCCCC----cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc------
Confidence            566666533  2334445555544443211100    0112344444444466678888888888875322111      


Q ss_pred             CcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116          408 GDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       408 ~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  452 (482)
                               +........+....++.+++|+++|.-.++.+-..+
T Consensus       522 ---------~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~d  557 (898)
T COG5240         522 ---------VSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSD  557 (898)
T ss_pred             ---------ccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhh
Confidence                     111222456777789999999999998888765443

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=98.19  E-value=0.0003  Score=72.42  Aligned_cols=293  Identities=15%  Similarity=0.085  Sum_probs=184.7

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC---C-C
Q 043116          115 VPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK---P-Q  189 (482)
Q Consensus       115 i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~---~-~  189 (482)
                      ++.+...++. .....+..|+..|..++.....  +..++ .++|.++.++ .++...++..|+.+|..+...-   + .
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~d--e~~LD-RVlPY~v~l~-~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDD--EVKLD-RVLPYFVHLL-MDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcch--HHHHh-hhHHHHHHHh-cCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            4555555554 3456677888888888743321  11122 3788888888 7888899999998888777543   2 2


Q ss_pred             CChhhhhhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          190 PPFNQIRPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       190 ~~~~~~~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ......+-++|.|..++.+ ....++..-+.+|..++....    .+.+.+.-.....++++++.+.          ...
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~----rFle~~q~~~~~g~~n~~nset----------~~~  565 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY----RFLELTQELRQAGMLNDPNSET----------APE  565 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH----HHHHHHHHHHhcccccCccccc----------ccc
Confidence            2333446788999999887 556678888888888874321    2222222222333445544430          111


Q ss_pred             C-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116          269 G-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV  347 (482)
Q Consensus       269 ~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a  347 (482)
                      . .....+.+. .++-+.+..++.++ ++.||..-...|+-+|..-.   +.--+.-+++.|+..|.+.|+.+|..-...
T Consensus       566 ~~~~~~~~~L~-~~V~~~v~sLlsd~-~~~Vkr~Lle~i~~LC~FFG---k~ksND~iLshLiTfLNDkDw~LR~aFfds  640 (1431)
T KOG1240|consen  566 QNYNTELQALH-HTVEQMVSSLLSDS-PPIVKRALLESIIPLCVFFG---KEKSNDVILSHLITFLNDKDWRLRGAFFDS  640 (1431)
T ss_pred             cccchHHHHHH-HHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHhh---hcccccchHHHHHHHhcCccHHHHHHHHhh
Confidence            1 112222222 23444566777777 78899888888888875100   000122368899999999999998776666


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHH
Q 043116          348 ISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIE  427 (482)
Q Consensus       348 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  427 (482)
                      |.-++..-....    .++..++.|.+-+.++++-|...|+.+|..+++.+--.+.         ..     .+.++...
T Consensus       641 I~gvsi~VG~rs----~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~---------~v-----~~i~~~v~  702 (1431)
T KOG1240|consen  641 IVGVSIFVGWRS----VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKP---------AV-----KDILQDVL  702 (1431)
T ss_pred             ccceEEEEeeee----HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchH---------HH-----HHHHHhhh
Confidence            654433211111    3556889999999999999999999999999986544321         11     12245556


Q ss_pred             HhhcCCCHHHHHHHHHHHHHh
Q 043116          428 NLQSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       428 ~l~~~~~~~v~~~a~~~l~~~  448 (482)
                      -++-++|.=|+..+..+|-..
T Consensus       703 PlL~hPN~WIR~~~~~iI~~~  723 (1431)
T KOG1240|consen  703 PLLCHPNLWIRRAVLGIIAAI  723 (1431)
T ss_pred             hheeCchHHHHHHHHHHHHHH
Confidence            668899999998888887653

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.19  E-value=4.7e-06  Score=50.89  Aligned_cols=41  Identities=24%  Similarity=0.504  Sum_probs=37.1

Q ss_pred             ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      +++..+.+++.|+++.|+++|++. ++.++++|+|+|+|++.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            356678899999999999999988 99999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=0.00021  Score=70.82  Aligned_cols=238  Identities=13%  Similarity=0.092  Sum_probs=164.4

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh---HHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHh
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN---TKVAIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNV  140 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l  140 (482)
                      .+...+.+|+..+ .+-|..++-.+.+++..++..   ++.+.+.=+.+.+-++|.+       +....+..|+..|+.+
T Consensus         6 ~l~~c~~lL~~~~-D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSAD-DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCC-cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            3566788999888 688999999999999866533   3457777678889999987       3466788899999999


Q ss_pred             hCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHH
Q 043116          141 AGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRA  220 (482)
Q Consensus       141 ~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~  220 (482)
                      |.. |+....-.-.+-+|.++..+.+..+..+...+..+|..++............|.++.|++.+.+ .+.....++.+
T Consensus        85 ~~~-~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al~l  162 (543)
T PF05536_consen   85 CRD-PELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIALNL  162 (543)
T ss_pred             cCC-hhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHHHH
Confidence            963 4332111112369999999966666699999999999999776666666668999999999887 66667888888


Q ss_pred             HHHhccCCcHHH-HH--HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh-----HHHHHhcCchHHHHHHhcC
Q 043116          221 LAYLADGTNDKI-QA--VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ-----TQCIINCGALRYLLGLLIH  292 (482)
Q Consensus       221 L~~l~~~~~~~~-~~--~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----~~~l~~~~~i~~L~~ll~~  292 (482)
                      +.++........ ..  -.-..+++.+...........+-..+..|+.+....+..     ...-.-..+...+..++++
T Consensus       163 L~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~s  242 (543)
T PF05536_consen  163 LLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQS  242 (543)
T ss_pred             HHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHhc
Confidence            888775433111 00  000134455555556566667788899999888755321     1111223456667777777


Q ss_pred             CCchhHHHHHHHHHHHHhc
Q 043116          293 NHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       293 ~~~~~v~~~a~~~L~nl~~  311 (482)
                      ...+.-|..+....+.+..
T Consensus       243 r~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  243 RLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            7667777777766666654

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.11  E-value=2.6e-05  Score=69.08  Aligned_cols=185  Identities=15%  Similarity=0.207  Sum_probs=118.4

Q ss_pred             CCCChhhHHHHHHHHhHhhcCC--hhhHHHHHhc--CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116          249 GHRSRLVLTAALRTIGNIVTGD--DFQTQCIINC--GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG  324 (482)
Q Consensus       249 ~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  324 (482)
                      .+.++..+..++..|..++.++  ......+.+.  .++..+...+.+. ...+.+.|+.++..++......+..+.+ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            6678999999999999998766  2222222211  4567777888877 7889999999999998743333444544 4


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGT-HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKN  403 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~  403 (482)
                      ++|.|++.+.++..-++..|..+|..++...+ ...  .     ..+.+.....+.++.++..++..+..++........
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~--~-----~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPK--I-----LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--H--H-----HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHH--H-----HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            88999999999889999999999999998654 121  1     266777788999999999999999999876551110


Q ss_pred             cCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          404 TDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       404 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      .        +.....-....+.+.....+.+++|++.|..++..++.
T Consensus       168 ~--------l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  168 V--------LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYS  206 (228)
T ss_dssp             G--------G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred             h--------hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
Confidence            0        01100012346778888999999999999988887643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=98.10  E-value=0.00051  Score=65.36  Aligned_cols=288  Identities=13%  Similarity=0.123  Sum_probs=167.7

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      .|.|-.++++....+++++++..+.++..+-   ....+.. .+..|-.+|+++. ...|..|+++|..++...|+... 
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv---~~~~~~~-~vs~L~~fL~s~r-v~~rFsA~Riln~lam~~P~kv~-  339 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENV---GSQFVDQ-TVSSLRTFLKSTR-VVLRFSAMRILNQLAMKYPQKVS-  339 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhcc---CHHHHHH-HHHHHHHHHhcch-HHHHHHHHHHHHHHHhhCCceee-
Confidence            3444455556668999999999999887641   1122222 4666778888888 88999999999999986665321 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                          -+=+-+-.++.+.+..+...|+.+|..-  +..+.-+.++.  .++.++.-+    +......+..++..||..-|
T Consensus       340 ----vcN~evEsLIsd~Nr~IstyAITtLLKT--Gt~e~idrLv~--~I~sfvhD~----SD~FKiI~ida~rsLsl~Fp  407 (898)
T COG5240         340 ----VCNKEVESLISDENRTISTYAITTLLKT--GTEETIDRLVN--LIPSFVHDM----SDGFKIIAIDALRSLSLLFP  407 (898)
T ss_pred             ----ecChhHHHHhhcccccchHHHHHHHHHc--CchhhHHHHHH--HHHHHHHhh----ccCceEEeHHHHHHHHhhCc
Confidence                1113444566666766666666655443  33333233322  233344333    22333344455555555444


Q ss_pred             CCChhhhhhHHHHHHHHh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHHHHHhHh
Q 043116          189 QPPFNQIRPALRVLAQLI-RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAALRTIGNI  266 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l  266 (482)
                      ....    ..+..|...| +.+.-+...++..++..+..+.++..+     ..+..|+.++.+. -+.+....+.+|+  
T Consensus       408 ~k~~----s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skE-----raLe~LC~fIEDcey~~I~vrIL~iLG--  476 (898)
T COG5240         408 SKKL----SYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKE-----RALEVLCTFIEDCEYHQITVRILGILG--  476 (898)
T ss_pred             HHHH----HHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHH-----HHHHHHHHHHhhcchhHHHHHHHHHhc--
Confidence            3333    2334444333 355677888888888888877665443     2345666666543 2444444444444  


Q ss_pred             hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHH
Q 043116          267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAW  346 (482)
Q Consensus       267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~  346 (482)
                       ...|.....   ...+..+..-+--. +.-+|..|..+|..++....+   ......+...|-+.+.+.|.++|..|..
T Consensus       477 -~EgP~a~~P---~~yvrhIyNR~iLE-N~ivRsaAv~aLskf~ln~~d---~~~~~sv~~~lkRclnD~DdeVRdrAsf  548 (898)
T COG5240         477 -REGPRAKTP---GKYVRHIYNRLILE-NNIVRSAAVQALSKFALNISD---VVSPQSVENALKRCLNDQDDEVRDRASF  548 (898)
T ss_pred             -ccCCCCCCc---chHHHHHHHHHHHh-hhHHHHHHHHHHHHhccCccc---cccHHHHHHHHHHHhhcccHHHHHHHHH
Confidence             332221100   01333444433334 667999999999888763211   1122235566778888999999999999


Q ss_pred             HHHHhhc
Q 043116          347 VISNATS  353 (482)
Q Consensus       347 aL~~l~~  353 (482)
                      ++.++-.
T Consensus       549 ~l~~~~~  555 (898)
T COG5240         549 LLRNMRL  555 (898)
T ss_pred             HHHhhhh
Confidence            9998853

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.09  E-value=0.0039  Score=62.73  Aligned_cols=313  Identities=12%  Similarity=0.063  Sum_probs=185.9

Q ss_pred             HHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116           32 MVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI  110 (482)
Q Consensus        32 l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  110 (482)
                      +...+. ++.|.+..++++.+...++.. . -...+.. -++...+..+.....+-++..|+++++..++  ++....+ 
T Consensus       454 ~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~-~-~~~~~~~-~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~-  527 (1005)
T KOG2274|consen  454 IDNGLVYQESPFLLLRAFLTISKFSSST-V-INPQLLQ-HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSL-  527 (1005)
T ss_pred             HHhhcccccCHHHHHHHHHHHHHHHhhh-c-cchhHHH-HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceecccc-
Confidence            333444 566877779999999887762 1 1111111 2344445555544436789999999888874  2322222 


Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhhcCCCC
Q 043116          111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-EHAKLSMLRTATWTLSNFCRGKPQ  189 (482)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~~~~~~  189 (482)
                      ..+++..|..+....+.++-...+.+|+..+.-+|+.... .++.+.|..+.+.. .+.|+.+...+-.++..++... .
T Consensus       528 ~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~-~  605 (1005)
T KOG2274|consen  528 QPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIA-A  605 (1005)
T ss_pred             chHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-H
Confidence            2367788888888888888889999999999888775433 34456666666653 4566767777777777777642 2


Q ss_pred             CChhhhhhHHHHHHHHhccCC----hhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHH
Q 043116          190 PPFNQIRPALRVLAQLIRSND----EKVLTDACRALAYLADGTN-DKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTI  263 (482)
Q Consensus       190 ~~~~~~~~~~~~L~~ll~~~~----~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L  263 (482)
                      ....+....+|.+++.+..++    .....-++..|..+.++.+ ...+.++ .-.++.+.++. .+++..+...+-.||
T Consensus       606 ~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcL  684 (1005)
T KOG2274|consen  606 NYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECL  684 (1005)
T ss_pred             hhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHH
Confidence            233345789999999999776    5566667777776665433 2333233 34556666665 556777888888999


Q ss_pred             hHhhcCChhhHHHHHhcCchH--HHHHHhcCCCchhHHHHHHHHHHHHh----cCCHHHHHHHHHcCChHHHH-HHHhcC
Q 043116          264 GNIVTGDDFQTQCIINCGALR--YLLGLLIHNHNKSIKKEVCWIISNIT----AGNREQIQAVIDAGLIGPIV-NLLQDA  336 (482)
Q Consensus       264 ~~l~~~~~~~~~~l~~~~~i~--~L~~ll~~~~~~~v~~~a~~~L~nl~----~~~~~~~~~l~~~~~i~~L~-~ll~~~  336 (482)
                      ..+.....++...--..++..  .+++.+..=-+++.-..++..++.+.    .+-...+...++ .++...+ ++-+.+
T Consensus       685 ra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d-~IL~Avisrmq~ae  763 (1005)
T KOG2274|consen  685 RALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD-QILRAVISRLQQAE  763 (1005)
T ss_pred             HHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH-HHHHHHHHHHHHhh
Confidence            988876555443333333322  33333321112233334444444443    222222222221 1233322 233356


Q ss_pred             ChhHHHHHHHHHHHhhcC
Q 043116          337 EFGTKKEAAWVISNATSG  354 (482)
Q Consensus       337 ~~~~~~~a~~aL~~l~~~  354 (482)
                      ...+....+.+++.+...
T Consensus       764 ~lsviQsLi~VfahL~~t  781 (1005)
T KOG2274|consen  764 TLSVIQSLIMVFAHLVHT  781 (1005)
T ss_pred             hHHHHHHHHHHHHHHhhC
Confidence            778888888888888764

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=0.0094  Score=61.36  Aligned_cols=340  Identities=16%  Similarity=0.148  Sum_probs=192.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      ..+..|+..++..|..++..|++.+..+++..+..-...     ++...+.++...+.+..-..|+-+|+.++...--.-
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlp  415 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLP  415 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcch
Confidence            456778888888999999999999999998863222333     444556655544435666788999999987432211


Q ss_pred             HHHHhCCChHHHHHhhCC--------CCHHHHHHHHHHHHHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116          107 KVAIDHGAVPIFVKLLAS--------PSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTA  176 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~--------~~~~~~~~a~~~L~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  176 (482)
                      ..+.  .++|.+.+.+.-        ....+|..|+.+.+.+++.....  +. +.. .....|+....-+.+...++.|
T Consensus       416 s~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrevncRRAA  491 (1133)
T KOG1943|consen  416 SLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREVNCRRAA  491 (1133)
T ss_pred             HHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchhhHhHHH
Confidence            1111  345666665532        34578999999999888544321  11 111 1222222222245566778888


Q ss_pred             HHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-hCCCC
Q 043116          177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND---EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL-LGHRS  252 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~  252 (482)
                      ..++.......++...     ++    +++.+-|   ...+.++-..++.-....+...+.+     +..++.. +.+=+
T Consensus       492 sAAlqE~VGR~~n~p~-----Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~-----f~~L~t~Kv~HWd  557 (1133)
T KOG1943|consen  492 SAALQENVGRQGNFPH-----GI----SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPV-----FNHLLTKKVCHWD  557 (1133)
T ss_pred             HHHHHHHhccCCCCCC-----ch----hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHH-----HHHHHhccccccc
Confidence            8888877655322211     11    1122111   2233333333333222233222222     2233222 45567


Q ss_pred             hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH---HHHHHHH---cC--
Q 043116          253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE---QIQAVID---AG--  324 (482)
Q Consensus       253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~---~~--  324 (482)
                      +.++..+.++|.+++...++.    ...+.++.++....+. +...+....-+.+.+......   ....+.+   ++  
T Consensus       558 ~~irelaa~aL~~Ls~~~pk~----~a~~~L~~lld~~ls~-~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~  632 (1133)
T KOG1943|consen  558 VKIRELAAYALHKLSLTEPKY----LADYVLPPLLDSTLSK-DASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLL  632 (1133)
T ss_pred             HHHHHHHHHHHHHHHHhhHHh----hcccchhhhhhhhcCC-ChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhh
Confidence            889999999999988755553    3346788888888887 777777666666666542111   1111111   12  


Q ss_pred             -ChHHHHHHHhc-C-ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          325 -LIGPIVNLLQD-A-EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       325 -~i~~L~~ll~~-~-~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                       +++.+...-.. + ..-++...+..+.++... ........+..+....+.+.+.+++ .++..+.+++..+..
T Consensus       633 ~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s-~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s  705 (1133)
T KOG1943|consen  633 SIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS-KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVS  705 (1133)
T ss_pred             hhccHHHHHHhccchHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHH
Confidence             24444333222 2 245566677777777664 3333334444555666666666666 777777777777654

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.0016  Score=64.15  Aligned_cols=281  Identities=16%  Similarity=0.130  Sum_probs=175.6

Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC
Q 043116           76 VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG  155 (482)
Q Consensus        76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  155 (482)
                      -+=|++++ .-+|-..++.|+.+-  .++...     ..+|.+...|.+...-+|++|+.++..|......   .+.  +
T Consensus       105 RkDLQHPN-EyiRG~TLRFLckLk--E~ELle-----pl~p~IracleHrhsYVRrNAilaifsIyk~~~~---L~p--D  171 (948)
T KOG1058|consen  105 RKDLQHPN-EYIRGSTLRFLCKLK--EPELLE-----PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH---LIP--D  171 (948)
T ss_pred             hhhccCch-HhhcchhhhhhhhcC--cHHHhh-----hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh---hcC--C
Confidence            34466777 778888888888773  344433     4578888899999999999999999988643111   111  1


Q ss_pred             ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc---cCChhHHHHHHHHHHHhccCCcHHH
Q 043116          156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---SNDEKVLTDACRALAYLADGTNDKI  232 (482)
Q Consensus       156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~~l~~L~~l~~~~~~~~  232 (482)
                      +-..+-..|....|+.-.++|.-.|...-.          +.++..+...+.   +-++..+......+...+...+...
T Consensus       172 apeLi~~fL~~e~DpsCkRNAFi~L~~~D~----------ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~  241 (948)
T KOG1058|consen  172 APELIESFLLTEQDPSCKRNAFLMLFTTDP----------ERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEK  241 (948)
T ss_pred             hHHHHHHHHHhccCchhHHHHHHHHHhcCH----------HHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHh
Confidence            222333444456677777777655543221          344444444433   3356677777777777775444332


Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116          233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG  312 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  312 (482)
                           ..++..+..+|.+.++.++.+|+.+|.+++. .+...+.     ....++.++....+..++--..--|..+...
T Consensus       242 -----~~~i~~i~~lL~stssaV~fEaa~tlv~lS~-~p~alk~-----Aa~~~i~l~~kesdnnvklIvldrl~~l~~~  310 (948)
T KOG1058|consen  242 -----ARYIRCIYNLLSSTSSAVIFEAAGTLVTLSN-DPTALKA-----AASTYIDLLVKESDNNVKLIVLDRLSELKAL  310 (948)
T ss_pred             -----hHHHHHHHHHHhcCCchhhhhhcceEEEccC-CHHHHHH-----HHHHHHHHHHhccCcchhhhhHHHHHHHhhh
Confidence                 3467889999999999999999999999876 4443332     2345666665554666776666666666532


Q ss_pred             CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHH
Q 043116          313 NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLE  392 (482)
Q Consensus       313 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~  392 (482)
                      ...    +++ |.+-.+++++.+++-+++..++.....++...+-+..-.+....+...--. -+.++.+.+...++.+.
T Consensus       311 ~~~----il~-~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~-e~d~~~~yRqlLiktih  384 (948)
T KOG1058|consen  311 HEK----ILQ-GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNE-ESDDNGKYRQLLIKTIH  384 (948)
T ss_pred             hHH----HHH-HHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhcccc-ccccchHHHHHHHHHHH
Confidence            222    222 466677888899999999999999999987666555444443332222111 12233355665666666


Q ss_pred             HHHH
Q 043116          393 NILK  396 (482)
Q Consensus       393 ~l~~  396 (482)
                      ...-
T Consensus       385 ~cav  388 (948)
T KOG1058|consen  385 ACAV  388 (948)
T ss_pred             HHhh
Confidence            5543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.0036  Score=57.86  Aligned_cols=231  Identities=13%  Similarity=0.145  Sum_probs=165.8

Q ss_pred             chhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC----CCC----cHHHHHhcCCHHHHHHhhcCCC----
Q 043116           16 PALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFD----RNS----PIEKVIQSGVVPRFVEFLMRED----   83 (482)
Q Consensus        16 ~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~----~~~----~~~~~~~~g~~~~L~~ll~~~~----   83 (482)
                      |++-+.+. .+++++.|+++|..++.++-...+..|..+...+    ..+    ....+++.++++.|++.+..=+    
T Consensus       115 PdLYp~lv-eln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  115 PDLYPILV-ELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             hHHHHHHH-HhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            33444443 6778999999999999999999999999987642    112    2566778899999998886433    


Q ss_pred             -ChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHH
Q 043116           84 -YPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPL  160 (482)
Q Consensus        84 -~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l  160 (482)
                       ..+-...+..++-|+..-.+.....+.+.|.+..|+.-+..  +-..-+..|..+++-+..++.+.+...-...++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence             12334556778888888888899999999988888774432  445566778888888887776677777777888888


Q ss_pred             HHHHcc--------hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc--H
Q 043116          161 LAELNE--------HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN--D  230 (482)
Q Consensus       161 ~~~l~~--------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~--~  230 (482)
                      ++.+.-        ....++.++...+|+.+.....+.........++...-+++. ....+..++..|-....+++  +
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~  352 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTP  352 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchH
Confidence            888741        124567888888888888876555555556666655555554 55567788888888887665  6


Q ss_pred             HHHHHHHhCcHHHHHHhh
Q 043116          231 KIQAVIEAGVCPRLVKLL  248 (482)
Q Consensus       231 ~~~~~~~~~~l~~L~~ll  248 (482)
                      .+..+++..++..+....
T Consensus       353 ~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  353 NCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHHHHhHHHHHHHH
Confidence            666777776666665543

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.03  E-value=0.0055  Score=61.86  Aligned_cols=140  Identities=16%  Similarity=0.155  Sum_probs=100.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      +|.+++...+.|.+++...-..|...+...+    +.++-  .++.+.+=+++++ +.+|..|+++++.+-.  ++... 
T Consensus        57 f~dViK~~~trd~ElKrL~ylYl~~yak~~P----~~~lL--avNti~kDl~d~N-~~iR~~AlR~ls~l~~--~el~~-  126 (757)
T COG5096          57 FPDVIKNVATRDVELKRLLYLYLERYAKLKP----ELALL--AVNTIQKDLQDPN-EEIRGFALRTLSLLRV--KELLG-  126 (757)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHhccCH----HHHHH--HHHHHHhhccCCC-HHHHHHHHHHHHhcCh--HHHHH-
Confidence            3444444445556666555555666655532    11121  3677888888999 9999999999998833  33322 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                          .+++++.+++.++++.+|..|+-++.++..-++   +.+.+.|.+..+..++ .++++.+..+|+.+|..+...
T Consensus       127 ----~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~---~l~~~~g~~~~l~~l~-~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         127 ----NIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDK---DLYHELGLIDILKELV-ADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             ----HHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCH---hhhhcccHHHHHHHHh-hCCCchHHHHHHHHHHHhchh
Confidence                357899999999999999999999999985543   3455666666666666 888999999999999988766

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=98.03  E-value=5.8e-05  Score=66.80  Aligned_cols=187  Identities=16%  Similarity=0.079  Sum_probs=120.8

Q ss_pred             ccCChhHHHHHHHHHHHhccCC--cHHHHHHHHh--CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 043116          207 RSNDEKVLTDACRALAYLADGT--NDKIQAVIEA--GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA  282 (482)
Q Consensus       207 ~~~~~~~~~~~l~~L~~l~~~~--~~~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  282 (482)
                      .+.+++.+..++.-|..+..+.  ......+.+.  .++..+...+.+....+...|+.++..++........... ..+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYA-DIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHH-HHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HHH
Confidence            5678999999999999988655  2222222221  5566777788877888999999999999975544444333 357


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhhcCCC--HHH
Q 043116          283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL-IGPIVNLLQDAEFGTKKEAAWVISNATSGGT--HEQ  359 (482)
Q Consensus       283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~--~~~  359 (482)
                      ++.|++.+.++ ...++..|..+|..++...+- ..     .+ ++.+.....+.++.+|..++..+..++....  ...
T Consensus        96 l~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~~-~~-----~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~  168 (228)
T PF12348_consen   96 LPPLLKKLGDS-KKFIREAANNALDAIIESCSY-SP-----KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSV  168 (228)
T ss_dssp             HHHHHHGGG----HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GG
T ss_pred             HHHHHHHHccc-cHHHHHHHHHHHHHHHHHCCc-HH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhh
Confidence            89999999988 888999999999999885441 00     12 4556666788999999999999999987543  111


Q ss_pred             HH-HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116          360 IK-HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       360 ~~-~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~  401 (482)
                      .. ...-..+.+.+...+.+++++|+..+-.++..+....+..
T Consensus       169 l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  169 LQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             G--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             hcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence            11 1011346788889999999999999999999998765554

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=0.012  Score=62.73  Aligned_cols=326  Identities=16%  Similarity=0.173  Sum_probs=184.7

Q ss_pred             hcccchhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHH
Q 043116           12 QISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA   91 (482)
Q Consensus        12 ~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a   91 (482)
                      ..+.++..+++.   ..||+|.+.=-.+++.+|..-..+...+.... ...++.. -..++.-|+.-+.+..| .+|+.+
T Consensus       986 ~~a~~kl~p~l~---kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~-k~~vd~y-~neIl~eLL~~lt~kew-RVReas 1059 (1702)
T KOG0915|consen  986 KQAGEKLEPYLK---KLIPRLYRYQYDPDKKVQDAMTSIWNALITDS-KKVVDEY-LNEILDELLVNLTSKEW-RVREAS 1059 (1702)
T ss_pred             HHHHHhhhhHHH---HhhHHHhhhccCCcHHHHHHHHHHHHHhccCh-HHHHHHH-HHHHHHHHHHhccchhH-HHHHHH
Confidence            334445555433   24788888777888888876666666666553 2222222 23467777777788885 999999


Q ss_pred             HHHHHHHhCCChHh--HHHHHhCCChHHHHHhhCCCCHHHHHH---HHHHHHHhhCC---C---hhhHHHHHHhCChHHH
Q 043116           92 ARALTNIASGTSEN--TKVAIDHGAVPIFVKLLASPSDDVREQ---AVWALGNVAGD---S---SRCRDFVLSQGALIPL  160 (482)
Q Consensus        92 ~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~---a~~~L~~l~~~---~---~~~~~~~~~~~~i~~l  160 (482)
                      +-+|..+..+.+.-  .+.+-  .+...+.+.+++-.+.+|+.   ++.+|+.+|..   .   ...++.+ + .++|.+
T Consensus      1060 clAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l-~-~iLPfL 1135 (1702)
T KOG0915|consen 1060 CLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEAL-D-IILPFL 1135 (1702)
T ss_pred             HHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHH-H-HHHHHH
Confidence            99999999854322  23232  24455555665555666664   45666766621   1   1111211 1 134444


Q ss_pred             HHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc------------cCC
Q 043116          161 LAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA------------DGT  228 (482)
Q Consensus       161 ~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~------------~~~  228 (482)
                      +.-=.-+.-+++++.+..++..|+...+..-......++|.+......-.+.+..+...-+.+..            ..+
T Consensus      1136 l~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~akss 1215 (1702)
T KOG0915|consen 1136 LDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSS 1215 (1702)
T ss_pred             hccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCC
Confidence            33211234568889999999999998876666666788888888877666655444222222221            111


Q ss_pred             c--HHHHHHHH-------hCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhH
Q 043116          229 N--DKIQAVIE-------AGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI  298 (482)
Q Consensus       229 ~--~~~~~~~~-------~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v  298 (482)
                      +  +.+...++       ..++|.+.++++.+ .-..+..++..+.-|+..-..... -.....+..++..+++. ++.+
T Consensus      1216 pmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emt-P~sgKll~al~~g~~dR-Nesv 1293 (1702)
T KOG0915|consen 1216 PMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMT-PYSGKLLRALFPGAKDR-NESV 1293 (1702)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccC-cchhHHHHHHhhccccc-cHHH
Confidence            1  01111111       13455555555432 223344444444444421110000 01123567788888887 9999


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          299 KKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       299 ~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      ++.-+.+.+.++. .++++.+.+++     .++..+..+.+..+..++..+.+++.+
T Consensus      1294 ~kafAsAmG~L~k~Ss~dq~qKLie-----~~l~~~l~k~es~~siscatis~Ian~ 1345 (1702)
T KOG0915|consen 1294 RKAFASAMGYLAKFSSPDQMQKLIE-----TLLADLLGKDESLKSISCATISNIANY 1345 (1702)
T ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH-----HHHHHHhccCCCccchhHHHHHHHHHh
Confidence            9999999999987 56666766654     333333333333446677777776553

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.00  E-value=0.015  Score=59.41  Aligned_cols=344  Identities=15%  Similarity=0.127  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc------CC-CChHHHHHHHHHHHHHhCC--ChHhHHHHHhCCCh
Q 043116           45 LEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM------RE-DYPQLQFEAARALTNIASG--TSENTKVAIDHGAV  115 (482)
Q Consensus        45 ~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~------~~-~~~~v~~~a~~~L~~l~~~--~~~~~~~~~~~g~i  115 (482)
                      ..|...+..+++..+.+..     .++++.+++.+.      .+ +++.-+..|++.+++++.-  -+..-+..++.-++
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv  464 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHH
Confidence            3456666666655322222     345666666665      22 2256678889999998741  11111223333345


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC---Ch
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP---PF  192 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~---~~  192 (482)
                      +.+...++++..-+|..|+|.++.++..+-.....+.  .++....+.+.++.+-+++..|+.+|..+..+.+..   ..
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~--~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~  542 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLS--EALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVS  542 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHH--HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHh
Confidence            6666677888889999999999999943322222222  256667777766778899999999999999886433   22


Q ss_pred             hhhhhHHHHHHHHhccCChhHHHHHHHHH-HHhccCCcHHHHHHHHhCcHHHHHHhhCC---C---ChhhHHHHHHHHhH
Q 043116          193 NQIRPALRVLAQLIRSNDEKVLTDACRAL-AYLADGTNDKIQAVIEAGVCPRLVKLLGH---R---SRLVLTAALRTIGN  265 (482)
Q Consensus       193 ~~~~~~~~~L~~ll~~~~~~~~~~~l~~L-~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~---~~~v~~~a~~~L~~  265 (482)
                      ....+.++.++++.+.-+.+....++..+ +..++.-......+++ .+...+.+++..   .   +..=...|.++|..
T Consensus       543 ~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q-~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~T  621 (1010)
T KOG1991|consen  543 AHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQ-NLAETFLKVLQTSEDEDESDDDKAIAASGILRT  621 (1010)
T ss_pred             hhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHH-HHHHHHHHHHhccCCCCccchHHHHHHHHHHHH
Confidence            34456666777777766655555555543 2333222112111222 344556666653   1   12233344444444


Q ss_pred             hh---cC---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChh
Q 043116          266 IV---TG---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFG  339 (482)
Q Consensus       266 l~---~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  339 (482)
                      +.   ..   .+...+ -++...++.+-.++++. -.++-.+++..+.++....++.-..+++  +++.+.+.+.....+
T Consensus       622 i~Til~s~e~~p~vl~-~le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~~~~Isp~mW~--ll~li~e~~~~~~~d  697 (1010)
T KOG1991|consen  622 ISTILLSLENHPEVLK-QLEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFLSKEISPIMWG--LLELILEVFQDDGID  697 (1010)
T ss_pred             HHHHHHHHhccHHHHH-HHHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhhhcccCHHHHH--HHHHHHHHHhhhhHH
Confidence            43   21   222222 22334666677777776 7778888888887777644333333443  778888888887788


Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHH-HHcCChHHHHhcCCCCC--HHHHHHHHHHHHHHHHhchh
Q 043116          340 TKKEAAWVISNATSGGTHEQIKHL-VREGCVKPLCDLLPCPD--PQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       340 ~~~~a~~aL~~l~~~~~~~~~~~l-~~~~~l~~L~~ll~~~~--~~v~~~~l~~L~~l~~~~~~  400 (482)
                      .-...+-+|.|+...+.+.....- .-.-+++.+..++.+.+  ..=...+.+.+..++-.+..
T Consensus       698 yf~d~~~~l~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg  761 (1010)
T KOG1991|consen  698 YFTDMMPALHNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG  761 (1010)
T ss_pred             HHHHHHHHHhhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC
Confidence            888899999999887765432210 01113344444454422  23344466677776654433

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.98  E-value=3.5e-05  Score=56.60  Aligned_cols=87  Identities=28%  Similarity=0.420  Sum_probs=70.4

Q ss_pred             HHHHHHHh-ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          199 LRVLAQLI-RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       199 ~~~L~~ll-~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      +|.|++.+ +++++.++..++++|+.+.   +.        ..++.+..+++++++.++..|+++|+.+-          
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG----------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence            57788888 7889999999999999543   11        34789999999999999999999999873          


Q ss_pred             HhcCchHHHHHHhcCCCchhHHHHHHHHHH
Q 043116          278 INCGALRYLLGLLIHNHNKSIKKEVCWIIS  307 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~  307 (482)
                       ....++.|.+++.++.+..+|..|+++|+
T Consensus        60 -~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence             12378889999988757778999998875

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.0095  Score=61.32  Aligned_cols=261  Identities=12%  Similarity=0.119  Sum_probs=163.5

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhh
Q 043116           69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRC  147 (482)
Q Consensus        69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~  147 (482)
                      ++++..|...+++.+ ..++-.|+..++.++...|..   + ...++...++++.. +++..-..++-+|+.++...--.
T Consensus       340 E~vie~Lls~l~d~d-t~VrWSaAKg~grvt~rlp~~---L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDTD-TVVRWSAAKGLGRVTSRLPPE---L-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCCc-chhhHHHHHHHHHHHccCcHH---H-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            357788888888999 799999999999999877722   2 22456667776553 34666678889999998544222


Q ss_pred             HHHHHHhCChHHHHHHHcc-------hhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHH-HHHhccCChhHHHHHH
Q 043116          148 RDFVLSQGALIPLLAELNE-------HAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVL-AQLIRSNDEKVLTDAC  218 (482)
Q Consensus       148 ~~~~~~~~~i~~l~~~l~~-------~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L-~~ll~~~~~~~~~~~l  218 (482)
                      ...+.+  +++.++.-+..       .....++..|+++++.+++.. +.........+.+.| ...+-+.+-..|..|.
T Consensus       415 ps~l~d--VvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAs  492 (1133)
T KOG1943|consen  415 PSLLED--VVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAAS  492 (1133)
T ss_pred             hHHHHH--HHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHH
Confidence            222222  46666665532       224578888999999999875 322222333344433 3345567778888888


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH-hcCCCchh
Q 043116          219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL-LIHNHNKS  297 (482)
Q Consensus       219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l-l~~~~~~~  297 (482)
                      .++....-...+.     ..| + .++.....-....+.++...+..-....+.....+++     .++.. +.+= +..
T Consensus       493 AAlqE~VGR~~n~-----p~G-i-~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~-----~L~t~Kv~HW-d~~  559 (1133)
T KOG1943|consen  493 AALQENVGRQGNF-----PHG-I-SLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFN-----HLLTKKVCHW-DVK  559 (1133)
T ss_pred             HHHHHHhccCCCC-----CCc-h-hhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHH-----HHHhcccccc-cHH
Confidence            8887655221110     001 1 1222222223345555555555555545544443433     23322 5555 889


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      +|..++|+|.+++...|+    ....+.++.+++...+.+...+.-+..+.+.++.
T Consensus       560 irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~  611 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG  611 (1133)
T ss_pred             HHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence            999999999999765444    2345788999999888999888887777777765

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0059  Score=62.17  Aligned_cols=360  Identities=13%  Similarity=0.094  Sum_probs=196.1

Q ss_pred             ccHHHHHHHhc------C--CCHHHHHHHHHHHHHHhcCCC-CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHH
Q 043116           27 EILPTMVAGVW------S--DDNKVQLEATTLFRKMLSFDR-NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN   97 (482)
Q Consensus        27 ~~i~~l~~~l~------s--~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~   97 (482)
                      +.++.+++.++      .  .++.....|++.+..+++.-. ...-+...+.=+++.+...++++- -.+|..|+|+++.
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~-g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPY-GYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCch-hHHHHHHHHHHHH
Confidence            34555566665      2  245556667887777775321 222233344445566666777877 7899999999999


Q ss_pred             HhCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHh--CChHHHHHHHcchhhhhHHH
Q 043116           98 IASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQ--GALIPLLAELNEHAKLSMLR  174 (482)
Q Consensus        98 l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~~~~  174 (482)
                      ++..+  +.+...-..++....+.+. +.+-.++..|+-+|..+..+.+.....+...  +.++.++.+. +..+.+...
T Consensus       489 ~~~~d--f~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~-ne~End~Lt  565 (1010)
T KOG1991|consen  489 FSSID--FKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLS-NEVENDDLT  565 (1010)
T ss_pred             HHhcc--CCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHH-HhcchhHHH
Confidence            98522  2211111234555566666 6777889999999999986665443333221  2344555555 333333333


Q ss_pred             HHHHHH-HHhhcCCCCCChhhhhhHHHHHHHHhcc---C---ChhHHHHHHHHHHHhcc------CCcHHHHHHHHhCcH
Q 043116          175 TATWTL-SNFCRGKPQPPFNQIRPALRVLAQLIRS---N---DEKVLTDACRALAYLAD------GTNDKIQAVIEAGVC  241 (482)
Q Consensus       175 ~a~~~L-~~L~~~~~~~~~~~~~~~~~~L~~ll~~---~---~~~~~~~~l~~L~~l~~------~~~~~~~~~~~~~~l  241 (482)
                      .+...+ ...+..-..........+.....+++.+   .   +.+-...|.++|..+.+      ..++..+ -.+..++
T Consensus       566 ~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~-~le~~~l  644 (1010)
T KOG1991|consen  566 NVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLK-QLEPIVL  644 (1010)
T ss_pred             HHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            333332 2333222223333446666777777764   1   23344445555544431      2222211 2233456


Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHH
Q 043116          242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAV  320 (482)
Q Consensus       242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l  320 (482)
                      +.+-.++++.-.++-+.++.++..+....++..-.+.  |+++.+.+.++.. ..+.-....-++.|+.. +.+.....-
T Consensus       645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~-~~dyf~d~~~~l~N~vt~g~~~~~s~~  721 (1010)
T KOG1991|consen  645 PVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDD-GIDYFTDMMPALHNYVTYGTPSLLSNP  721 (1010)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhh-hHHHHHHHHHHHhhheeeCchhhhccc
Confidence            6666677777777888888888877765544443343  5778888888887 67777888899999887 433221110


Q ss_pred             -HHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc----CC--CCCHHHHHHHHHHH
Q 043116          321 -IDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL----LP--CPDPQIVTVCLIGL  391 (482)
Q Consensus       321 -~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l----l~--~~~~~v~~~~l~~L  391 (482)
                       .-.-++.....++.+  ....-...|+..+..+..+... ....     +++.++++    +.  ..+...+..++...
T Consensus       722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg-~~dq-----~iplf~~~a~~~l~~~~e~s~~~~~~leVv  795 (1010)
T KOG1991|consen  722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG-LLDQ-----YIPLFLELALSRLTREVETSELRVMLLEVV  795 (1010)
T ss_pred             hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC-cHhh-----HhHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence             011123333334444  2233345566666666543221 1111     33333332    22  24456666777766


Q ss_pred             HHHHHhchh
Q 043116          392 ENILKVGEA  400 (482)
Q Consensus       392 ~~l~~~~~~  400 (482)
                      .+-+.+.+.
T Consensus       796 inalyynP~  804 (1010)
T KOG1991|consen  796 INALYYNPK  804 (1010)
T ss_pred             HHHHHcCcH
Confidence            666555444

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0094  Score=55.25  Aligned_cols=238  Identities=13%  Similarity=0.153  Sum_probs=160.3

Q ss_pred             HHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC-----h----HhHHHHHhCCChHHHH
Q 043116           49 TLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT-----S----ENTKVAIDHGAVPIFV  119 (482)
Q Consensus        49 ~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~-----~----~~~~~~~~~g~i~~L~  119 (482)
                      .-+.-+++.  ++.--.+++.+.++.|+.+|.+.+ .++....+..+..++..+     .    ...+.+++.++++.|+
T Consensus       106 Q~mhvlAt~--PdLYp~lveln~V~slL~LLgHeN-tDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLv  182 (536)
T KOG2734|consen  106 QEMHVLATM--PDLYPILVELNAVQSLLELLGHEN-TDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLV  182 (536)
T ss_pred             HHHHhhhcC--hHHHHHHHHhccHHHHHHHhcCCC-chhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHH
Confidence            334444443  333346778999999999999999 799999999999998632     1    2356778888999999


Q ss_pred             HhhCCCCHHH------HHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCCh
Q 043116          120 KLLASPSDDV------REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPF  192 (482)
Q Consensus       120 ~ll~~~~~~~------~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~  192 (482)
                      ..+..-++.+      ...++..+-|+..-.+.....+.+.|.+.-|+..+... .-.....+|..+++-+...+.....
T Consensus       183 qnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~  262 (536)
T KOG2734|consen  183 QNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRK  262 (536)
T ss_pred             HHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhh
Confidence            8886544333      34667788899888888888888889898888865433 3445566788888887776632211


Q ss_pred             -hhhhhHHHHHHHHhc---cC------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          193 -NQIRPALRVLAQLIR---SN------DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       193 -~~~~~~~~~L~~ll~---~~------~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                       .-.-.++..+++-+.   ..      ..+..++...||+.+..... ....+....+++...-+++. ....+..++++
T Consensus       263 ~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~Salkv  340 (536)
T KOG2734|consen  263 LLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSRGSALKV  340 (536)
T ss_pred             hhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhhhhHHHH
Confidence             111233344333322   11      24567778888888775544 45556676666766656655 45577889999


Q ss_pred             HhHhhcCCh--hhHHHHHhcCchHHHHHHhc
Q 043116          263 IGNIVTGDD--FQTQCIINCGALRYLLGLLI  291 (482)
Q Consensus       263 L~~l~~~~~--~~~~~l~~~~~i~~L~~ll~  291 (482)
                      |-....+.+  +.+..+.+..++..+....-
T Consensus       341 Ld~am~g~~gt~~C~kfVe~lGLrtiF~~FM  371 (536)
T KOG2734|consen  341 LDHAMFGPEGTPNCNKFVEILGLRTIFPLFM  371 (536)
T ss_pred             HHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence            998888665  56667777777766664443

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.92  E-value=8.4e-05  Score=54.77  Aligned_cols=68  Identities=16%  Similarity=0.344  Sum_probs=60.2

Q ss_pred             HHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh
Q 043116           87 LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ  154 (482)
Q Consensus        87 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  154 (482)
                      ++...+++++|++..++..++.+.+.|+++.++...  +..+|-+++.|++++.|++.++++.++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            466788999999999999999999999999999965  46789999999999999999999988877653

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.91  E-value=2e-05  Score=51.81  Aligned_cols=55  Identities=24%  Similarity=0.558  Sum_probs=47.8

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                      +.+|..|+|+|++++...++..+.+.. .+++.|+.++.++++.||..|+++|++|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            468999999999988877777766554 6999999999999999999999999875

...

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.90  E-value=4.6e-05  Score=55.94  Aligned_cols=87  Identities=30%  Similarity=0.463  Sum_probs=69.0

Q ss_pred             HHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           72 VPRFVEFL-MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        72 ~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      +|.|++.+ ++++ +.+|..++++|+.+..  +         ..++.|..+++++++.+|..|+++|+.+-         
T Consensus         1 i~~L~~~l~~~~~-~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPD-PQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSS-HHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCC-HHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC---------
Confidence            57889988 6666 9999999999995522  2         34899999999999999999999999883         


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLS  181 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  181 (482)
                        ....++.|...+.++.+..++..+..+|+
T Consensus        60 --~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 --DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             --HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence              12268889999966666667888888764

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.011  Score=58.69  Aligned_cols=72  Identities=21%  Similarity=0.285  Sum_probs=56.3

Q ss_pred             hhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh
Q 043116          195 IRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD  271 (482)
Q Consensus       195 ~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  271 (482)
                      .....+.+-.++.+....+...+++++.++.........     ..+..+-.+++++....|-.|.++|..++...+
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~-----pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P  314 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA-----PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHP  314 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc-----hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCC
Confidence            346777788888888899999999999988865443221     256778888899999999999999999987555

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.88  E-value=0.006  Score=59.32  Aligned_cols=231  Identities=16%  Similarity=0.119  Sum_probs=150.7

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC-----CChHHHHHHHHHHHHHhCCChHhHHHHHhC
Q 043116           38 SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE-----DYPQLQFEAARALTNIASGTSENTKVAIDH  112 (482)
Q Consensus        38 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~-----~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  112 (482)
                      +.++.+..+|+++|+|+.... ...++.+.+.|..+.++..|+..     + .++.....+.|.-++...++.+..+++.
T Consensus        43 ~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~-~d~~Fl~~RLLFLlTa~~~~~~~~L~~e  120 (446)
T PF10165_consen   43 SPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYSDSSQP-SDVEFLDSRLLFLLTALRPDDRKKLIEE  120 (446)
T ss_pred             CCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHcccccCCC-hhHHHHHHHHHHHHhcCChhHHHHHHHH
Confidence            567899999999999999876 55567777999999999999876     5 7899999999999988888888777655


Q ss_pred             -CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-------
Q 043116          113 -GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-------  167 (482)
Q Consensus       113 -g~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-------  167 (482)
                       +++..+...+..                 .+......++.++.|+....+.... -...+.++.++.++...       
T Consensus       121 ~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~  199 (446)
T PF10165_consen  121 HHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSS  199 (446)
T ss_pred             hhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCC
Confidence             677766665521                 1344556788889999855543222 01223455555554322       


Q ss_pred             -hhhhHHHHHHHHHHHhhcCCC-C-------C----ChhhhhhHHHHHHHHhc----cC----ChhHHHHHHHHHHHhcc
Q 043116          168 -AKLSMLRTATWTLSNFCRGKP-Q-------P----PFNQIRPALRVLAQLIR----SN----DEKVLTDACRALAYLAD  226 (482)
Q Consensus       168 -~~~~~~~~a~~~L~~L~~~~~-~-------~----~~~~~~~~~~~L~~ll~----~~----~~~~~~~~l~~L~~l~~  226 (482)
                       ........++.+|.|+-.... .       .    ........+..++.+|.    ..    -.+.....+.+|.+++.
T Consensus       200 ~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~  279 (446)
T PF10165_consen  200 PPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLAR  279 (446)
T ss_pred             CcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHH
Confidence             123456667777776622110 0       0    00111345555555554    22    24678888899999987


Q ss_pred             CCcHHHHHHHH----------------hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh
Q 043116          227 GTNDKIQAVIE----------------AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD  271 (482)
Q Consensus       227 ~~~~~~~~~~~----------------~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  271 (482)
                      .+....+.+..                ..+-..|++++.++.+.++..+...|..+|..+.
T Consensus       280 ~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  280 AAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             hcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            76544443332                1355678888888777788888888888775443

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.0013  Score=64.57  Aligned_cols=136  Identities=21%  Similarity=0.203  Sum_probs=96.0

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHH--HhccCCcHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhh
Q 043116          197 PALRVLAQLIRSNDEKVLTDACRALA--YLADGTNDKIQAVIEAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQ  273 (482)
Q Consensus       197 ~~~~~L~~ll~~~~~~~~~~~l~~L~--~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~  273 (482)
                      +.=+.+-+++.+.||-.|.....++.  .....+.         +.+..|+.. .++.+.+||+.|..+|+-++..+++.
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---------kair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---------KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---------hhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence            44556677888888888877666554  2222222         456667766 67889999999999999999877764


Q ss_pred             HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                               .+..+.+|..+.++.||..++.+|+-.|.++...       ..+..|-.+..+...-||+.|+.++.-+..
T Consensus       590 ---------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~  653 (929)
T KOG2062|consen  590 ---------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMI  653 (929)
T ss_pred             ---------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHH
Confidence                     4567788877779999999999999999853321       123333344456667788889988888766


Q ss_pred             CCCH
Q 043116          354 GGTH  357 (482)
Q Consensus       354 ~~~~  357 (482)
                      ..++
T Consensus       654 Q~t~  657 (929)
T KOG2062|consen  654 QQTE  657 (929)
T ss_pred             hccc
Confidence            4443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.85  E-value=0.067  Score=57.42  Aligned_cols=397  Identities=10%  Similarity=0.032  Sum_probs=197.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      -+..++..+..+...++-.|+++|..+...++.-....    .+-..+..-+.+.. ..||+.|+..++......++...
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~----dvq~~Vh~R~~Dss-asVREAaldLvGrfvl~~~e~~~  891 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRP----DVQEAVHGRLNDSS-ASVREAALDLVGRFVLSIPELIF  891 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCH----HHHHHHHHhhccch-hHHHHHHHHHHhhhhhccHHHHH
Confidence            45667777887789999999999999998763222222    23333444445555 79999999999987776666544


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      .+.     ..+..-+.+....+|..++..+..+|...|......-   +...++... .+++..++.-+..++..+...+
T Consensus       892 qyY-----~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~---~cakmlrRv-~DEEg~I~kLv~etf~klWF~p  962 (1692)
T KOG1020|consen  892 QYY-----DQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD---MCAKMLRRV-NDEEGNIKKLVRETFLKLWFTP  962 (1692)
T ss_pred             HHH-----HHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH---HHHHHHHHh-ccchhHHHHHHHHHHHHHhccC
Confidence            333     4455556677889999999999999987776532211   223333333 3344458888999999999876


Q ss_pred             CCC--ChhhhhhHHHHHHH-------HhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhh-------
Q 043116          188 PQP--PFNQIRPALRVLAQ-------LIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA---GVCPRLVKLL-------  248 (482)
Q Consensus       188 ~~~--~~~~~~~~~~~L~~-------ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll-------  248 (482)
                      +..  .......-++..+.       +..+..+......+.--....  .....+.+...   ..+..+..++       
T Consensus       963 ~~~~~d~~~~~~kI~~~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~--~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev 1040 (1692)
T KOG1020|consen  963 VPEVNDQPAKARKISLEVDVVMSQVDLMNDWLEQLLDHILKFYLLKT--MKESVKPVALAKVTHVLNLLTHCLVEKISEV 1040 (1692)
T ss_pred             CCcccccHHHHHhhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhhh--hhhhhhHHHHhhcchHHHHHHHHHHHHHHhh
Confidence            322  22111222222221       122223333333222111110  00001111111   1122222222       


Q ss_pred             -----CCCChhh-HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC----CchhHHHHHHHHHHHHhc---CCHH
Q 043116          249 -----GHRSRLV-LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN----HNKSIKKEVCWIISNITA---GNRE  315 (482)
Q Consensus       249 -----~~~~~~v-~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~----~~~~v~~~a~~~L~nl~~---~~~~  315 (482)
                           ..++..+ ....+.+|..++.-.|....    ...+-.|...|.+.    ....+....+.++-...-   ..++
T Consensus      1041 ~~~~~~~~~~~~~~~~~lstL~~FskirP~Llt----~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~se 1116 (1692)
T KOG1020|consen 1041 ESDDMNEEESEVRLLAYLSTLFVFSKIRPQLLT----KKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSE 1116 (1692)
T ss_pred             hhHhhhcccchhHHHHHHHHHHHHHhcCchhcc----HHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchH
Confidence                 1122233 34456666666664443211    12222233333332    233444444444443332   1111


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC--CCHHHHHHHHHc--CChHHHHhcCCCC----CHHHHHHH
Q 043116          316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG--GTHEQIKHLVRE--GCVKPLCDLLPCP----DPQIVTVC  387 (482)
Q Consensus       316 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~--~~~~~~~~l~~~--~~l~~L~~ll~~~----~~~v~~~~  387 (482)
                         .++. .+=..|+.++..........|..+++.++..  .+....+.+...  +.++.+-.-..+.    +.....+.
T Consensus      1117 ---sfL~-sLEe~L~~~i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~Rs 1192 (1692)
T KOG1020|consen 1117 ---SFLA-SLEEDLLKRIVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRS 1192 (1692)
T ss_pred             ---HHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHH
Confidence               1111 1223455555555566667777788877763  233333332221  1222222221122    22445566


Q ss_pred             HHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          388 LIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       388 l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      +..++-++++++.......+.....+...+ ..+.+..|.-...+.+..++..|..-+..+.
T Consensus      1193 iftlG~l~Ryfdf~~~~~~g~~~~~~~~~~-~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1193 IFTLGLLSRYFDFPKPSNDGKTFLQEGETL-KEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred             HHHHHHHHHhccCCCccCCCccchhhhhhH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            667777777655543332222222122222 3344555555566666777777777665543

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.84  E-value=0.00011  Score=54.20  Aligned_cols=95  Identities=17%  Similarity=0.247  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC
Q 043116          298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP  377 (482)
Q Consensus       298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~  377 (482)
                      .|+.+..+|..++.+-+......++ .+++.++..+.++++.+|..|+.+|.|++.....+...++-+  +++.|..+..
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~--IF~~L~kl~~   78 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNE--IFDALCKLSA   78 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHc
Confidence            3677888888887655555555554 489999999999999999999999999998655544444333  8888999999


Q ss_pred             CCCHHHHHHHHHHHHHHHH
Q 043116          378 CPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       378 ~~~~~v~~~~l~~L~~l~~  396 (482)
                      ++++.|+..| ..|.++++
T Consensus        79 D~d~~Vr~~a-~~Ld~llk   96 (97)
T PF12755_consen   79 DPDENVRSAA-ELLDRLLK   96 (97)
T ss_pred             CCchhHHHHH-HHHHHHhc
Confidence            9999988765 67777764

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0072  Score=62.84  Aligned_cols=243  Identities=13%  Similarity=0.115  Sum_probs=153.1

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHH
Q 043116           75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RCRDFV  151 (482)
Q Consensus        75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  151 (482)
                      +.....+.++..+|..+.++|..++.. +.......+.  .+.+.|.+-+++.....+...+.+|..|....+ +....+
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i  736 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLI  736 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            334444443379999999999999884 3332211111  244666666777777788888888888874443 333333


Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh--cCC----CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFC--RGK----PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~--~~~----~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      ..  .++.++-.+ +..+...++.+..+|..++  ...    ...........++.+...+-..........+-++..+.
T Consensus       737 ~k--~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il  813 (1176)
T KOG1248|consen  737 PK--LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHIL  813 (1176)
T ss_pred             HH--HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHH
Confidence            22  344444444 6667778888888888887  221    12223445666666666555444444444355555555


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHH
Q 043116          226 DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI  305 (482)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~  305 (482)
                      .........-.-.++++.+..+|.+.+++++..|+..+..++...+...-.-....+++.+..+++.. ...+|..+-..
T Consensus       814 ~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  814 QEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            32222222222235667777888999999999999999999987776544333445788888988877 88899888888


Q ss_pred             HHHHhc-CCHHHHHHHHH
Q 043116          306 ISNITA-GNREQIQAVID  322 (482)
Q Consensus       306 L~nl~~-~~~~~~~~l~~  322 (482)
                      +-.++. ...+.++.+++
T Consensus       893 lekLirkfg~~eLe~~~p  910 (1176)
T KOG1248|consen  893 LEKLIRKFGAEELESFLP  910 (1176)
T ss_pred             HHHHHHHhCHHHHHhhCH
Confidence            888887 45555666665

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.79  E-value=5.3e-05  Score=49.78  Aligned_cols=55  Identities=24%  Similarity=0.296  Sum_probs=46.6

Q ss_pred             hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116          253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI  309 (482)
Q Consensus       253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl  309 (482)
                      |.+|..|+++|++++...+..... ....+++.|..+|+++ ++.||..|+|+|+++
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            568999999999998877766554 4457999999999988 779999999999875

...

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.76  E-value=0.017  Score=50.06  Aligned_cols=256  Identities=15%  Similarity=0.162  Sum_probs=157.0

Q ss_pred             HHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           29 LPTMVAGVWS--DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        29 i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +..+.+.|..  ....-++.|+..|+++....            .+..+.+...+++ ...+...+.+|+.+..      
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~~~------------~i~~i~ka~~d~s-~llkhe~ay~LgQ~~~------   65 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLGPA------------AIKAITKAFIDDS-ALLKHELAYVLGQMQD------   65 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCChH------------HHHHHHHhcccch-hhhccchhhhhhhhcc------
Confidence            4445555543  33455677888888887643            1555555555554 5666777888887755      


Q ss_pred             HHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          107 KVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                           ...++.|+..+.+  ..+-+|..|..+|+++.  .+.         .++.+-+.. +++-.++...+..++..+-
T Consensus        66 -----~~Av~~l~~vl~desq~pmvRhEAaealga~~--~~~---------~~~~l~k~~-~dp~~~v~ETc~lAi~rle  128 (289)
T KOG0567|consen   66 -----EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG--DPE---------SLEILTKYI-KDPCKEVRETCELAIKRLE  128 (289)
T ss_pred             -----chhhHHHHHHhcccccchHHHHHHHHHHHhhc--chh---------hHHHHHHHh-cCCccccchHHHHHHHHHH
Confidence                 2467888888775  45778889999999886  222         233333333 4454555555555555554


Q ss_pred             cCCCCC-------------ChhhhhhHHHHHHHH-hccCChhH-HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC
Q 043116          185 RGKPQP-------------PFNQIRPALRVLAQL-IRSNDEKV-LTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG  249 (482)
Q Consensus       185 ~~~~~~-------------~~~~~~~~~~~L~~l-l~~~~~~~-~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  249 (482)
                      ..+...             .......-+.-+-.. +..+.+.. +..+...|+|+..  ++         .+..+..-+.
T Consensus       129 ~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~  197 (289)
T KOG0567|consen  129 WKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLA  197 (289)
T ss_pred             HhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcc
Confidence            432100             000112223334333 33333333 4455566666542  11         2456777777


Q ss_pred             CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHH
Q 043116          250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP  328 (482)
Q Consensus       250 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~  328 (482)
                      .++.-+|..+..+++.|-.  +.         .++.+.+.|.. .+++.||.+|+.+|+.++.  ++         .++.
T Consensus       198 ~~SalfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~~v  255 (289)
T KOG0567|consen  198 DDSALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CVEV  255 (289)
T ss_pred             cchHHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HHHH
Confidence            7888899999999998864  22         35566666644 4488999999999999864  44         5566


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          329 IVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       329 L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      |.+++.++++-+++.+..+|..+-.
T Consensus       256 L~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  256 LKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             HHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            6777788888888888888876543

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.72  E-value=0.011  Score=57.75  Aligned_cols=297  Identities=13%  Similarity=0.119  Sum_probs=154.7

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV  151 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  151 (482)
                      ...++...+ ++ ...+..|+..+.....+-|+..+.     .+..+++++.+++..+|..|+..|..+|.+.+.....+
T Consensus        25 y~~il~~~k-g~-~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv   97 (556)
T PF05918_consen   25 YKEILDGVK-GS-PKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV   97 (556)
T ss_dssp             HHHHHHGGG-S--HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH
T ss_pred             HHHHHHHcc-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH
Confidence            344555555 35 789999999999999998988764     46889999999999999999999999998877654444


Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc---cCChhHHHHHHHHHHH-hccC
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---SNDEKVLTDACRALAY-LADG  227 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---~~~~~~~~~~l~~L~~-l~~~  227 (482)
                           ...|.++| ..++..-...+-.+|..+...++       .+.+..+...+.   +.++.+++.++..|.. +..-
T Consensus        98 -----aDvL~QlL-~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l  164 (556)
T PF05918_consen   98 -----ADVLVQLL-QTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPL  164 (556)
T ss_dssp             -----HHHHHHHT-T---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS
T ss_pred             -----HHHHHHHH-hcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhC
Confidence                 45778888 56666666666677777666543       455555555554   5678899999887753 2211


Q ss_pred             CcHHHH--HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----ChhhHHHHHhcCchHHHHHHh------cCCCc
Q 043116          228 TNDKIQ--AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DDFQTQCIINCGALRYLLGLL------IHNHN  295 (482)
Q Consensus       228 ~~~~~~--~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l~~~~~i~~L~~ll------~~~~~  295 (482)
                      ..+...  .-.+.-++..+.+.|.+-...--...+.+|..+-..    .....+.+     ++.+.+..      ... +
T Consensus       165 ~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeL-----v~ii~eQa~Ld~~f~~s-D  238 (556)
T PF05918_consen  165 KPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLLKSLKIYGGKQTIEGRQEL-----VDIIEEQADLDQPFDPS-D  238 (556)
T ss_dssp             -TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHHHTSGG---GSSHHHHHHH-----HHHHHHHHTTTS---SS-S
T ss_pred             cHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhCccccccCChHHHHHH-----HHHHHHHhccCCCCCCc-C
Confidence            111111  112223445666777654433333344555555431    22222322     22233222      112 3


Q ss_pred             hhHHHHHHHHHHH----Hhc--CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 043116          296 KSIKKEVCWIISN----ITA--GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCV  369 (482)
Q Consensus       296 ~~v~~~a~~~L~n----l~~--~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  369 (482)
                      ++.-.....++..    ++.  .+...+.++.+ .++|.+-++    +.+.+...+.++..++.+........++. -++
T Consensus       239 ~e~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~~~~~d~~~~L~-~i~  312 (556)
T PF05918_consen  239 PESIDRLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPFCGAQDARQLLP-SIF  312 (556)
T ss_dssp             HHHHHHHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT----THHHHHH-HHH
T ss_pred             HHHHHHHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCCCCcccHHHHHH-HHH
Confidence            3333333333322    122  24444444444 477766555    45677788888888887654333333221 133


Q ss_pred             HHHHhcCCC--CCH----HHHHHHHHHHHHHHHhchh
Q 043116          370 KPLCDLLPC--PDP----QIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       370 ~~L~~ll~~--~~~----~v~~~~l~~L~~l~~~~~~  400 (482)
                      ..|...+-.  ..+    ..++..+.++..+....+.
T Consensus       313 ~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k~p~  349 (556)
T PF05918_consen  313 QLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARKSPN  349 (556)
T ss_dssp             HHHHTTS----------HHHHHHHHHHHHHHHTT-TH
T ss_pred             HHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhhCcc
Confidence            334333322  222    3566777777777766554

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.72  E-value=0.00024  Score=66.04  Aligned_cols=301  Identities=14%  Similarity=0.119  Sum_probs=158.3

Q ss_pred             HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhC-----CChhhHHHHHHhCChHHH
Q 043116           86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAG-----DSSRCRDFVLSQGALIPL  160 (482)
Q Consensus        86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~l  160 (482)
                      .+|.++..+|..++.+-.-.+..+++  +...+...+-+..+.++..+..++..+-.     ..|...+.-...+.+..+
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            46667777777776633333333332  33445555667888999988888877642     222211111111211111


Q ss_pred             ------HHHHcchhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHH
Q 043116          161 ------LAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQ  233 (482)
Q Consensus       161 ------~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~  233 (482)
                            -....+......+...|.+++++.... .......-...+-.+..+-++.+.-++..+++++.-+.-+..-...
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d  427 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQD  427 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhh
Confidence                  112222334456667777888777653 1111111111111122222334455777888888777766554444


Q ss_pred             HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----Chh---hHHHHHhcCchHHHHHHh--cCCCchhHHHHHHH
Q 043116          234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DDF---QTQCIINCGALRYLLGLL--IHNHNKSIKKEVCW  304 (482)
Q Consensus       234 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~---~~~~l~~~~~i~~L~~ll--~~~~~~~v~~~a~~  304 (482)
                      ...-......+...+.+..-..|..++|+++|+...    .+.   ....+.. -.+..++..-  .+..+.+|+..+..
T Consensus       428 ~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg-~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  428 VIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSG-LLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             HHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHH-HHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence            444445566677777777777999999999999742    221   2222211 1223333222  22326789999999


Q ss_pred             HHHHHhcCCHHHHHHHHHc-------CChHHHHHH-HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116          305 IISNITAGNREQIQAVIDA-------GLIGPIVNL-LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL  376 (482)
Q Consensus       305 ~L~nl~~~~~~~~~~l~~~-------~~i~~L~~l-l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  376 (482)
                      +|+|+..-    .+.+.+.       +-+..+..- .-.....++-++|++++|+..+..-.....=....+++.|..++
T Consensus       507 aLgnllQv----lq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv  582 (728)
T KOG4535|consen  507 ALGNLLQF----LQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLV  582 (728)
T ss_pred             HHhhHHHH----HHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHH
Confidence            99999741    2222221       112222211 12456789999999999999864321100001112466666665


Q ss_pred             C-CCCHHHHHHHHHHHHH
Q 043116          377 P-CPDPQIVTVCLIGLEN  393 (482)
Q Consensus       377 ~-~~~~~v~~~~l~~L~~  393 (482)
                      . ..|-+|+.++..+|..
T Consensus       583 ~~~~NFKVRi~AA~aL~v  600 (728)
T KOG4535|consen  583 TSCKNFKVRIRAAAALSV  600 (728)
T ss_pred             HHhccceEeehhhhhhcC
Confidence            4 4566666666655543

>PRK14707 hypothetical protein; Provisional

Probab=97.69  E-value=0.089  Score=58.37  Aligned_cols=402  Identities=16%  Similarity=0.062  Sum_probs=228.7

Q ss_pred             cHHHHHHHhc--CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           28 ILPTMVAGVW--SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        28 ~i~~l~~~l~--s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .+..+++.++  .++...+..+...-..++..  ....+.+-..|+...|-.+-+=+++++.+..+...-..++. ....
T Consensus       164 ~~~lllNafSKw~~~~~c~~aa~~la~~~~~~--d~~~~~~~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~-~~~l  240 (2710)
T PRK14707        164 NISLALNAFSKWSDNPDCQAVAPRFAALVASD--DRLRSAMDAQGVATVLNALCKWPDTPDCGNAVSALAERLAD-ESRL  240 (2710)
T ss_pred             cHHHHHHHhhcCCCCchHHHHHHHHHHHhcCC--hhhhcccchHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcC-cHHH
Confidence            4666777775  45666666555555555544  23344444444444444444555547777666555555655 5566


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      +..+-..|+-..|-.+-+=++......++..+..=..+.+..++.+-. ..+...++-+.+-.+..+-..+...|..=..
T Consensus       241 ~~~~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~-q~vanalNalSKwpd~~vc~~Aa~~la~rl~  319 (2710)
T PRK14707        241 RNELKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDP-INVTQALNALSKWADLPVCAEAAIALAERLA  319 (2710)
T ss_pred             HHhCChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCH-HHHHHHHhhhhcCCCchHHHHHHHHHHHHHh
Confidence            666655555555555555456555555555555433344555444322 2355566666677777777776665554444


Q ss_pred             CCCCCChhhh-hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116          186 GKPQPPFNQI-RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       186 ~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  264 (482)
                      +++....... .++-..|..+-+-++..+-..+..+|..=...+++..+.+--.|+-..|-.+-+=++..+...+...|.
T Consensus       320 ~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~q~~a~~lNalsKWp~~~~c~~aa~~LA  399 (2710)
T PRK14707        320 DDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEPQGVSSVLNALSKWPDTPVCAAAASALA  399 (2710)
T ss_pred             ccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccchhHHHHHHhhhhcCCCchHHHHHHHHHH
Confidence            4443333333 344444555555666666666666665433344444444443444444444445577777777777776


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      .=..++++..+.+-..|+-..|-.+-+.+ +..+...++..|.--..++.+..+.+-..++...|-.+-+-+|..+...+
T Consensus       400 ~~l~~d~~l~~~~~~Q~van~lnalsKWP-d~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~a  478 (2710)
T PRK14707        400 EHVVDDLELRKGLDPQGVSNALNALAKWP-DLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQT  478 (2710)
T ss_pred             HHhccChhhhhhcchhhHHHHHHHhhcCC-cchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHH
Confidence            65555666655444444444444455556 77788888888887777777766655555555555555566788888888


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      +..|..=... +++.++.+--.++...|-.+-+.++......++..|..=+-..            ......|...+...
T Consensus       479 a~~La~~l~~-~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~rl~~~------------~~l~~~~~~~~~~~  545 (2710)
T PRK14707        479 ASALAARLAH-ERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAERVVDE------------LQLRKAFDAHQVVN  545 (2710)
T ss_pred             HHHHHHHhcc-cHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhccc------------hhhhhhhhhHHHHH
Confidence            8877766654 5566666666677777888888888765444443332222111            12244444455556


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHH
Q 043116          425 KIENLQSHDNNDIHEMSVKILET  447 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~  447 (482)
                      .+..+..++....-+.+..-|..
T Consensus       546 ~lnalSKwp~s~~C~~A~~~iA~  568 (2710)
T PRK14707        546 TLKALSKWPDKQLCAVAASGLAE  568 (2710)
T ss_pred             HHHhhhcCCchhHHHHHHHHHHH
Confidence            66666666655554444444443

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.67  E-value=0.0071  Score=60.03  Aligned_cols=141  Identities=11%  Similarity=0.133  Sum_probs=81.7

Q ss_pred             hhHHHHHHHHhcc-CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116          196 RPALRVLAQLIRS-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT  274 (482)
Q Consensus       196 ~~~~~~L~~ll~~-~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  274 (482)
                      ...++.|..+|.. +.-+.......++..+....++...     .++..|+..+.+..  ...-+.++|+-+....+.. 
T Consensus       390 ~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe-----~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a-  461 (865)
T KOG1078|consen  390 TVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE-----RGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKA-  461 (865)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh-----HHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCC-
Confidence            4555666666654 3456666777777766654443322     23455555553322  3333444444444433221 


Q ss_pred             HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116          275 QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT  352 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~  352 (482)
                        ......+..+....--. +..+|..|..++.++...++..     ...+...|.+.+.+.+.+++..|..++.++.
T Consensus       462 --~~Pskyir~iyNRviLE-n~ivRaaAv~alaKfg~~~~~l-----~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  462 --PNPSKYIRFIYNRVILE-NAIVRAAAVSALAKFGAQDVVL-----LPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             --CCcchhhHHHhhhhhhh-hhhhHHHHHHHHHHHhcCCCCc-----cccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence              11123445555555445 7788999999999988543331     2235556777778888999999998888886

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=97.67  E-value=0.0041  Score=62.74  Aligned_cols=157  Identities=12%  Similarity=0.094  Sum_probs=115.4

Q ss_pred             HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh
Q 043116          175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL  254 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  254 (482)
                      ..=.+++.++.+.+      +...+|-+++...+.|.+++.-+-.-+.+.++..++..-.     .+..+.+=+.++++.
T Consensus        39 AmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----avNti~kDl~d~N~~  107 (757)
T COG5096          39 AMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AVNTIQKDLQDPNEE  107 (757)
T ss_pred             HHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHhhccCCCHH
Confidence            34455666666543      4566777777777888888888888888888777743321     245667777888999


Q ss_pred             hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116          255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      +|..|+++++.+-.  ++...     .+++.+.+.+.++ ++.||+.|+.++..+-.-+++   .+.+.|.+..+..++.
T Consensus       108 iR~~AlR~ls~l~~--~el~~-----~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld~~---l~~~~g~~~~l~~l~~  176 (757)
T COG5096         108 IRGFALRTLSLLRV--KELLG-----NIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLDKD---LYHELGLIDILKELVA  176 (757)
T ss_pred             HHHHHHHHHHhcCh--HHHHH-----HHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcCHh---hhhcccHHHHHHHHhh
Confidence            99999998886632  22222     4677888999988 889999999999998765544   4446778888888888


Q ss_pred             cCChhHHHHHHHHHHHhhc
Q 043116          335 DAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       335 ~~~~~~~~~a~~aL~~l~~  353 (482)
                      +.+|.+..+|..++..+-.
T Consensus       177 D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         177 DSDPIVIANALASLAEIDP  195 (757)
T ss_pred             CCCchHHHHHHHHHHHhch
Confidence            8899999999888887754

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=97.66  E-value=0.00043  Score=64.44  Aligned_cols=274  Identities=20%  Similarity=0.174  Sum_probs=149.6

Q ss_pred             HhcCCCHHHHHHHHHHHHHHhcCC----CCCcHHHHHhcCCHHHHHH-------hhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           35 GVWSDDNKVQLEATTLFRKMLSFD----RNSPIEKVIQSGVVPRFVE-------FLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        35 ~l~s~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~~g~~~~L~~-------ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      .+...+|+++..++..+.++...-    .++..+.-...|-+-.+.-       .-.+.. +..+..++..+.++.....
T Consensus       303 ~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~-~Tl~~s~Cdals~i~~~~f  381 (728)
T KOG4535|consen  303 CMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEH-PTLQASACDALSSILPEAF  381 (728)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcC-CCchhHHHHHHhhcCchhh
Confidence            344667999999999998877542    1222222222222222111       112223 4567777888888765221


Q ss_pred             HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      +.-..-.+...+..+..+-.+++.-++..|+++++-+.-+.....+...-......++..+ .+..-..+..+.|+++|+
T Consensus       382 ~~lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl-~d~~ln~r~KaawtlgnI  460 (728)
T KOG4535|consen  382 SNLPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSL-EDKSLNVRAKAAWSLGNI  460 (728)
T ss_pred             cCCCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHh-hhHhHhHHHHHHHHhhhh
Confidence            1100000001111222222334445677788888877755443333333333455555555 444556788999999999


Q ss_pred             hcC----CCCCChhhhh---hHHHHHHHHhc---cCChhHHHHHHHHHHHhccCCcHHH----HHHHHhCcHHHHHHh-h
Q 043116          184 CRG----KPQPPFNQIR---PALRVLAQLIR---SNDEKVLTDACRALAYLADGTNDKI----QAVIEAGVCPRLVKL-L  248 (482)
Q Consensus       184 ~~~----~~~~~~~~~~---~~~~~L~~ll~---~~~~~~~~~~l~~L~~l~~~~~~~~----~~~~~~~~l~~L~~l-l  248 (482)
                      +..    .|........   ..+..+...-.   ..+..++..+.++|+|+...-+...    ..+.+ +-+..+... .
T Consensus       461 TdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~-~~~~~l~~~v~  539 (728)
T KOG4535|consen  461 TDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE-ESIQALISTVL  539 (728)
T ss_pred             HHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH-HHHHhccccee
Confidence            863    2443333221   22223332221   2457899999999999885322111    11111 222222222 2


Q ss_pred             CCCChhhHHHHHHHHhHhhcCChh-hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          249 GHRSRLVLTAALRTIGNIVTGDDF-QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       249 ~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      ....-+|+.++|++++|+..+..- ....-....+++.|..++.+..+.+||..|+.+|..-..
T Consensus       540 ~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  540 TEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            234567999999999999974322 122222335678888888877689999999999987654

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.63  E-value=0.0033  Score=50.49  Aligned_cols=130  Identities=14%  Similarity=0.127  Sum_probs=103.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCC------hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHH
Q 043116          233 QAVIEAGVCPRLVKLLGHRS------RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWI  305 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~  305 (482)
                      ..++..+++..|++++.++.      .++...++.++..|..+. ......+...++..+...+.... +..+...+...
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHHH
Confidence            35677788999999997654      367788899999988854 33345666678888998888764 68899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHH
Q 043116          306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHL  363 (482)
Q Consensus       306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l  363 (482)
                      |-+++..++...+.+.+.--++.|+..++..+++++.+++..+..+..++++..++.+
T Consensus        84 LEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   84 LESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            9999988777665555655699999999999999999999999999988777665543

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.072  Score=55.82  Aligned_cols=234  Identities=13%  Similarity=0.050  Sum_probs=142.6

Q ss_pred             HHHHHcchhhhhHHHHHHHHHHHhhcCCCC--CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116          160 LLAELNEHAKLSMLRTATWTLSNFCRGKPQ--PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE  237 (482)
Q Consensus       160 l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~--~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  237 (482)
                      +.....++.+..++..+...|..++...+.  ........+...+.+-+++.....+...+.||..+....+.....++.
T Consensus       658 v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~  737 (1176)
T KOG1248|consen  658 VDPEFENSSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP  737 (1176)
T ss_pred             hhHHhhccccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            344444555778999999999999988322  122233566777777788888888999999998888665522222333


Q ss_pred             hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC------chHHHHHHhcCCC---chhHHHHHHHHHHH
Q 043116          238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG------ALRYLLGLLIHNH---NKSIKKEVCWIISN  308 (482)
Q Consensus       238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~------~i~~L~~ll~~~~---~~~v~~~a~~~L~n  308 (482)
                      .-+.+.++.+ ++.+..-++.+..+|..++.     .....+.|      .+..++..+.-+.   ...+......++..
T Consensus       738 k~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~  811 (1176)
T KOG1248|consen  738 KLIPEVILSL-KEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITH  811 (1176)
T ss_pred             HHHHHHHHhc-ccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence            3333444444 77788888888888888873     11111111      3333443333221   22222222333333


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHH
Q 043116          309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCL  388 (482)
Q Consensus       309 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l  388 (482)
                      +..........-.-.+++..+.-++.+..+++++.|+..+.-++..-+...... ....+++.+..+.++....++.++-
T Consensus       812 il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~-~~~~LL~sll~ls~d~k~~~r~Kvr  890 (1176)
T KOG1248|consen  812 ILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSP-HLEELLPSLLALSHDHKIKVRKKVR  890 (1176)
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhh-hHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            332111111111112345556666778999999999999999988655444333 2234788888888888889999998


Q ss_pred             HHHHHHHHhchh
Q 043116          389 IGLENILKVGEA  400 (482)
Q Consensus       389 ~~L~~l~~~~~~  400 (482)
                      ..|..+++....
T Consensus       891 ~LlekLirkfg~  902 (1176)
T KOG1248|consen  891 LLLEKLIRKFGA  902 (1176)
T ss_pred             HHHHHHHHHhCH
Confidence            899988876444

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.58  E-value=0.012  Score=54.52  Aligned_cols=207  Identities=11%  Similarity=0.076  Sum_probs=147.6

Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh-----hHHHHHhc--CchHHHHHHhcCCCchhHHHHHHHH
Q 043116          233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF-----QTQCIINC--GALRYLLGLLIHNHNKSIKKEVCWI  305 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~-----~~~~l~~~--~~i~~L~~ll~~~~~~~v~~~a~~~  305 (482)
                      +.++..+.+..|+..|..-+-+.+..+..+.+++.+....     ....+.+.  .++..|+...+   ++++.-.+...
T Consensus        70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~---~~dial~~g~m  146 (335)
T PF08569_consen   70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE---NPDIALNCGDM  146 (335)
T ss_dssp             HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG---STTTHHHHHHH
T ss_pred             HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc---CccccchHHHH
Confidence            3466778999999999998999999999999999875422     23344332  35555555544   44566666677


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhcCCCCCHH
Q 043116          306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE---GCVKPLCDLLPCPDPQ  382 (482)
Q Consensus       306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~  382 (482)
                      |..++.. +...+.++....+..+.+.++.++.++...|...+..+... .+.....++..   .++..+..++.+++.=
T Consensus       147 lRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~-hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  147 LRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTR-HKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            7777654 56677888888999999999999999999999999998775 44444444443   4567888899999999


Q ss_pred             HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      ++..+++.|+.++....+..         .....+.+..-+..+-.++.+++..++-.|-.+..-+.....
T Consensus       225 tkrqslkLL~ellldr~n~~---------vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~  286 (335)
T PF08569_consen  225 TKRQSLKLLGELLLDRSNFN---------VMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPN  286 (335)
T ss_dssp             HHHHHHHHHHHHHHSGGGHH---------HHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS
T ss_pred             eehhhHHHHHHHHHchhHHH---------HHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCC
Confidence            99999999999997655532         123344455567778888999999999999998886665543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PRK14707 hypothetical protein; Provisional

Probab=97.56  E-value=0.19  Score=56.00  Aligned_cols=387  Identities=17%  Similarity=0.112  Sum_probs=223.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116           41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM-REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV  119 (482)
Q Consensus        41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  119 (482)
                      ......++++=..+...+  ..+..+- .--+..+++.++ -+++.+.+..+......++. .+..+..+-.. .|..++
T Consensus       137 ~~c~~a~a~i~~~~~~~~--~~~~~l~-~~~~~lllNafSKw~~~~~c~~aa~~la~~~~~-~d~~~~~~~~q-~ia~~l  211 (2710)
T PRK14707        137 GRCERAVARLARHLRRED--KARQTLN-AQNISLALNAFSKWSDNPDCQAVAPRFAALVAS-DDRLRSAMDAQ-GVATVL  211 (2710)
T ss_pred             hHHHHHHHHHHHHhcccc--chhhhhc-cccHHHHHHHhhcCCCCchHHHHHHHHHHHhcC-ChhhhcccchH-HHHHHH
Confidence            444555555555554432  2222221 223444555443 44446777777777677766 45555555443 444445


Q ss_pred             HhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh-h
Q 043116          120 KLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI-R  196 (482)
Q Consensus       120 ~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~-~  196 (482)
                      ..++.  +++.-+. +...|.....+....+..+- ...+...++-+.+-++...-..++..+..=....+....... .
T Consensus       212 Na~sKWp~~~~c~~-aa~~la~~l~~~~~l~~~~~-~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~~q  289 (2710)
T PRK14707        212 NALCKWPDTPDCGN-AVSALAERLADESRLRNELK-PQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALDPI  289 (2710)
T ss_pred             HHHhcCCCChhHHH-HHHHHHHHHcCcHHHHHhCC-hHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcCHH
Confidence            54442  4444444 44444444334444444433 334666677776667776776666555543333333333322 3


Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHH
Q 043116          197 PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQC  276 (482)
Q Consensus       197 ~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~  276 (482)
                      ++-..|..+-+.++..+-..+...|..=.-++.+..+.+-..++-..|-.+-+=++..+...+...|..=...++...+.
T Consensus       290 ~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~  369 (2710)
T PRK14707        290 NVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKD  369 (2710)
T ss_pred             HHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcc
Confidence            44444555556677777666666665433334444333322233333333334466666666666665554545555443


Q ss_pred             HHhcCchHHHHHHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          277 IINCGALRYLLGLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       277 l~~~~~i~~L~~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                       ++..++..+++-+ +.+ +..+...|+..|..-..++++..+.+-..|+-..|-.+-+-++..+...++.+|.--..+ 
T Consensus       370 -l~~q~~a~~lNalsKWp-~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~-  446 (2710)
T PRK14707        370 -LEPQGVSSVLNALSKWP-DTPVCAAAASALAEHVVDDLELRKGLDPQGVSNALNALAKWPDLPICGQAVSALAGRLAH-  446 (2710)
T ss_pred             -cchhHHHHHHhhhhcCC-CchHHHHHHHHHHHHhccChhhhhhcchhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhc-
Confidence             3344455555544 445 777888888888777777788666666666666666666678889999999998887765 


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCH
Q 043116          356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNN  435 (482)
Q Consensus       356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~  435 (482)
                      +.+.++.+--.++...|-.+-+.+|..+...+.+.|..-+.....            .++-|.-.+....|..|..-++.
T Consensus       447 d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~------------l~~a~~~q~~~~~L~aLSK~Pd~  514 (2710)
T PRK14707        447 DTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERR------------LRKALKPQEVVIALHSLSKWPDT  514 (2710)
T ss_pred             cHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHH------------HHhhcCHHHHHHHHHHhhcCCCc
Confidence            677777767777777777788899998887777766655543322            35556666777788888877776


Q ss_pred             HHHHHH-HHHHHHhc
Q 043116          436 DIHEMS-VKILETYW  449 (482)
Q Consensus       436 ~v~~~a-~~~l~~~~  449 (482)
                      .....| .++..+..
T Consensus       515 ~~c~~A~~~lA~rl~  529 (2710)
T PRK14707        515 PICAEAASALAERVV  529 (2710)
T ss_pred             HHHHHHHHHHHHHhc
Confidence            665444 44444443

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.55  E-value=0.022  Score=49.36  Aligned_cols=257  Identities=18%  Similarity=0.213  Sum_probs=160.8

Q ss_pred             HHHHHHhhcCCCC-hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           72 VPRFVEFLMREDY-PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        72 ~~~L~~ll~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      +..+.+.|..... ..-+..|+..|.++..  +         +.+..+.+...+++...+.....+|+.....       
T Consensus         5 i~~i~~~L~~~s~~l~~r~rALf~Lr~l~~--~---------~~i~~i~ka~~d~s~llkhe~ay~LgQ~~~~-------   66 (289)
T KOG0567|consen    5 IETIGNILVNKSQPLQNRFRALFNLRNLLG--P---------AAIKAITKAFIDDSALLKHELAYVLGQMQDE-------   66 (289)
T ss_pred             HHHHHHHHcCccHHHHHHHHHHHhhhccCC--h---------HHHHHHHHhcccchhhhccchhhhhhhhccc-------
Confidence            3445555554331 2334555555555544  1         2367777777777777777888888877522       


Q ss_pred             HHHhCChHHHHHHHcchh-hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116          151 VLSQGALIPLLAELNEHA-KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN  229 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~-~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~  229 (482)
                          ..++.+...+.... .+-++..|..+|..+. .         ...++.+-+..+++-..++..+..++..+-..+.
T Consensus        67 ----~Av~~l~~vl~desq~pmvRhEAaealga~~-~---------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~  132 (289)
T KOG0567|consen   67 ----DAVPVLVEVLLDESQEPMVRHEAAEALGAIG-D---------PESLEILTKYIKDPCKEVRETCELAIKRLEWKDI  132 (289)
T ss_pred             ----hhhHHHHHHhcccccchHHHHHHHHHHHhhc-c---------hhhHHHHHHHhcCCccccchHHHHHHHHHHHhhc
Confidence                25778888885433 4556677999998877 2         3566777777777777888888777776652211


Q ss_pred             HHH----HHH--H------HhCcHHHHHHhhCCCC-hh-hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCc
Q 043116          230 DKI----QAV--I------EAGVCPRLVKLLGHRS-RL-VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN  295 (482)
Q Consensus       230 ~~~----~~~--~------~~~~l~~L~~ll~~~~-~~-v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  295 (482)
                      -..    ...  .      ..+-+..+-..+.+.+ +. -|..+.+.|.|+-.  ++         .+..+++-+..+ +
T Consensus       133 ~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~--Ee---------aI~al~~~l~~~-S  200 (289)
T KOG0567|consen  133 IDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGT--EE---------AINALIDGLADD-S  200 (289)
T ss_pred             cccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCc--HH---------HHHHHHHhcccc-h
Confidence            000    000  0      0111233333332222 11 23445555554421  22         344566777777 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 043116          296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLC  373 (482)
Q Consensus       296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  373 (482)
                      .-.|.+++++++.+-+  +.         .++.|.+.|.  .+++.+|..|+.||+.++.   ++         +++.|.
T Consensus       201 alfrhEvAfVfGQl~s--~~---------ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~---e~---------~~~vL~  257 (289)
T KOG0567|consen  201 ALFRHEVAFVFGQLQS--PA---------AIPSLIKVLLDETEHPMVRHEAAEALGAIAD---ED---------CVEVLK  257 (289)
T ss_pred             HHHHHHHHHHHhhccc--hh---------hhHHHHHHHHhhhcchHHHHHHHHHHHhhcC---HH---------HHHHHH
Confidence            8899999999999854  33         5666666665  4689999999999999875   22         578888


Q ss_pred             hcCCCCCHHHHHHHHHHHHHHH
Q 043116          374 DLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       374 ~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +.++++++-|++.|..+|.-+-
T Consensus       258 e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  258 EYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHH
Confidence            8999888888888887777654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.52  E-value=0.043  Score=50.52  Aligned_cols=198  Identities=13%  Similarity=0.113  Sum_probs=126.9

Q ss_pred             HHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHH--hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC--ChhhH
Q 043116          199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE--AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG--DDFQT  274 (482)
Q Consensus       199 ~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~  274 (482)
                      +.-.+..+.......|..++..+.++...... .+.+.+  .-++..+.+.++.+..+-+..|+++++-++-.  .....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            33444555666788999999999888754321 122222  24677888888887766677787777777654  22333


Q ss_pred             HHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHH--Hh----------cCCh
Q 043116          275 QCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNL--LQ----------DAEF  338 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~l--l~----------~~~~  338 (482)
                      ..+++ .+.|.|...+.++. ...+|..++.+|+-++.   ..++.....++  .+..+...  .+          .+++
T Consensus       124 ~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  124 EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            44444 47788888888763 34566666666666654   33443332222  22222111  11          1235


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116          339 GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~  401 (482)
                      .+...|+.+.+-++...+........ ...++.|..+|++++.+|+..|-.+|.-+++.....
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~  262 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYELARDH  262 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcc
Confidence            68888998888887765554444322 346999999999999999999999999999877653

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=97.52  E-value=0.078  Score=49.14  Aligned_cols=225  Identities=8%  Similarity=0.090  Sum_probs=157.4

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcH-----HHHHHHHh--CcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTND-----KIQAVIEA--GVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~-----~~~~~~~~--~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      .+++..|+..|..-+-+.+..+.....++......     ..+.+...  .++..|+..-  +++++...+-..|..++.
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy--~~~dial~~g~mlRec~k  152 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY--ENPDIALNCGDMLRECIK  152 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG--GSTTTHHHHHHHHHHHTT
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh--cCccccchHHHHHHHHHh
Confidence            57788888888888889999999999888855322     23333332  3444444433  456677777777777776


Q ss_pred             CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC---ChHHHHHHHhcCChhHHHHHH
Q 043116          269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG---LIGPIVNLLQDAEFGTKKEAA  345 (482)
Q Consensus       269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~~~~a~  345 (482)
                       .+...+.++....+..+.+.++.+ +-++...|..++..+....+.....++..+   ++.....++.+++.-+++.++
T Consensus       153 -~e~l~~~iL~~~~f~~ff~~~~~~-~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl  230 (335)
T PF08569_consen  153 -HESLAKIILYSECFWKFFKYVQLP-NFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL  230 (335)
T ss_dssp             -SHHHHHHHHTSGGGGGHHHHTTSS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred             -hHHHHHHHhCcHHHHHHHHHhcCC-ccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence             566677888888888999999998 999999999999998876677667777543   577888888999999999999


Q ss_pred             HHHHHhhcCCCHHH--HHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh--c
Q 043116          346 WVISNATSGGTHEQ--IKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA--E  421 (482)
Q Consensus       346 ~aL~~l~~~~~~~~--~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~  421 (482)
                      ..|+.+........  .+++.+..-+..++.++.++...++..|.-++.-+.....+         +.++...+...  .
T Consensus       231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K---------~~~I~~iL~~Nr~k  301 (335)
T PF08569_consen  231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNK---------PPPIVDILIKNREK  301 (335)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS----------BHHHHHHHHHTHHH
T ss_pred             HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCC---------ChHHHHHHHHHHHH
Confidence            99999987432222  34444556688999999999999999999888877754333         33456655444  3


Q ss_pred             hHHHHHHhhcCC
Q 043116          422 GLEKIENLQSHD  433 (482)
Q Consensus       422 ~~~~l~~l~~~~  433 (482)
                      .++.+.+...+.
T Consensus       302 Ll~fl~~f~~~~  313 (335)
T PF08569_consen  302 LLRFLKDFHTDR  313 (335)
T ss_dssp             HHHHHHTTTTT-
T ss_pred             HHHHHHhCCCCC
Confidence            566666666555

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.50  E-value=0.0018  Score=65.23  Aligned_cols=189  Identities=17%  Similarity=0.153  Sum_probs=130.0

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh-------------HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116          114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC-------------RDFVLSQGALIPLLAELNEHAKLSMLRTATWTL  180 (482)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-------------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  180 (482)
                      +...|+.+|++  +++-..+..++.-+..+.+..             |+.+. ..++|.+.+.+. ..+...+.....+|
T Consensus       816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~-t~~~~~K~~yl~~L  891 (1030)
T KOG1967|consen  816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFE-TAPGSQKHNYLEAL  891 (1030)
T ss_pred             HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhc-cCCccchhHHHHHH
Confidence            34566777765  344455666666665544332             22222 246788888884 55566777788888


Q ss_pred             HHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC---hhhH
Q 043116          181 SNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS---RLVL  256 (482)
Q Consensus       181 ~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~  256 (482)
                      +++...-|... ......++|.|++.|.-+|..++...+.++.-+...........+ .-+++.++.+-++++   ..+|
T Consensus       892 shVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  892 SHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHH
Confidence            88888655422 223468899999999999999999999999877755443322222 245677777766655   4699


Q ss_pred             HHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          257 TAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       257 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      ..|+.+|..+.+..|...-......++..+.+.|.++ ..-||++|..+=.+
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLVRKEAVDTRQN 1021 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHHHHHHHHHhhh
Confidence            9999999999986665444455567889999999998 88899998866444

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.50  E-value=0.00033  Score=42.62  Aligned_cols=39  Identities=36%  Similarity=0.732  Sum_probs=35.8

Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA  141 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  141 (482)
                      ++.+..+.+.|+++.|++++.++++.++..++|+|.|++
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347788899999999999999999999999999999996

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.49  E-value=0.0021  Score=63.92  Aligned_cols=240  Identities=14%  Similarity=0.080  Sum_probs=155.9

Q ss_pred             hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhc
Q 043116          147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLA  225 (482)
Q Consensus       147 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~  225 (482)
                      -+...++.|+...++++.. ...+........+|..    .-..........++.+.+.++... .--....+.++.|++
T Consensus       496 ~~~~~Ik~~~~~aLlrl~~-~q~e~akl~~~~aL~~----~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLa  570 (748)
T KOG4151|consen  496 ERAKKIKPGGYEALLRLGQ-QQFEEAKLKWYHALAG----KIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLA  570 (748)
T ss_pred             hcCccccccHHHHHHHHHH-HhchHHHHHHHHHHhh----hcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhccc
Confidence            3445667788999999884 4444555555666651    111111222455555555555332 223455788899999


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCCCchhHHHHHHH
Q 043116          226 DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHNHNKSIKKEVCW  304 (482)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~v~~~a~~  304 (482)
                      ..++...+.+.+...++.+-.++...++..+..++.++.||.-+..-..+.+.+ ....+.....+... +.....+++.
T Consensus       571 s~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~-~E~~~lA~a~  649 (748)
T KOG4151|consen  571 SISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA-DEKFELAGAG  649 (748)
T ss_pred             CcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh-hhHHhhhccc
Confidence            877766666888777777777888899999999999999999877666666776 34555555566554 7778888888


Q ss_pred             HHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHH
Q 043116          305 IISNITAGNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI  383 (482)
Q Consensus       305 ~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  383 (482)
                      ++..+..-...++.... -......+..++.+++++++......+.|+.. ...+....+.....++.+...-.-.-...
T Consensus       650 a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~-~~~ei~~~~~~~~~~~~l~~~~~~~~a~~  728 (748)
T KOG4151|consen  650 ALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFE-ALFEIAEKIFETEVMELLSGLQKLNRAPK  728 (748)
T ss_pred             cccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHH-HHHHHHHHhccchHHHHHHHHHHhhhhhh
Confidence            88867664444444222 24577788888899999999999999999543 45556666666665655555443322233


Q ss_pred             HHHHHHHHHH
Q 043116          384 VTVCLIGLEN  393 (482)
Q Consensus       384 ~~~~l~~L~~  393 (482)
                      +..+-.+|..
T Consensus       729 ~~~~~~~l~~  738 (748)
T KOG4151|consen  729 REDAAPCLSA  738 (748)
T ss_pred             hhhhhhHHHH
Confidence            3333333333

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.48  E-value=0.0057  Score=51.49  Aligned_cols=93  Identities=23%  Similarity=0.251  Sum_probs=74.6

Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH
Q 043116          210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL  289 (482)
Q Consensus       210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l  289 (482)
                      ++.++..++.+++-++...+...+     ..++.+...|.++++.+|..|+.+|..|...+.-..+    ..++..++..
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHHHH
Confidence            578999999999999976664443     4578999999999999999999999999874332211    2234778888


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcC
Q 043116          290 LIHNHNKSIKKEVCWIISNITAG  312 (482)
Q Consensus       290 l~~~~~~~v~~~a~~~L~nl~~~  312 (482)
                      +.++ +++++..|..++..+...
T Consensus        72 l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HcCC-CHHHHHHHHHHHHHHHHh
Confidence            8888 999999999999999874

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=97.47  E-value=0.12  Score=50.15  Aligned_cols=349  Identities=15%  Similarity=0.130  Sum_probs=192.3

Q ss_pred             HHHHHHhhcCCCCh--HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhH
Q 043116           72 VPRFVEFLMREDYP--QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCR  148 (482)
Q Consensus        72 ~~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~  148 (482)
                      +|.++..|.+.+..  .-.+..+.+|+.+|. ++...+.+.. .++..+...... .+......++.+|.++........
T Consensus         1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~-~~~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    1 LPALLALLPDSDSSTDSNYERILEALAALST-SPQILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             CchHHhhCCCCCCcchhHHHHHHHHHHHHHC-ChhHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            36677777766522  567788999999998 4454444433 445555555542 355666677777777763322211


Q ss_pred             -----HHHHHhCChHHHHHHHcchh------hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------
Q 043116          149 -----DFVLSQGALIPLLAELNEHA------KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----------  207 (482)
Q Consensus       149 -----~~~~~~~~i~~l~~~l~~~~------~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----------  207 (482)
                           ....+..+++.+++......      +..+...+...+..+++.-+.   ..-..++..+..++.          
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~---~~q~~~~~~~~~lf~~~~~~~~~~~  155 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSP---EKQQEILDELYSLFLSPKSFSPFQP  155 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHccccccCCCCc
Confidence                 22223336777776663321      244555555556555554321   111223434443332          


Q ss_pred             cC------ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChhhHHHHHhc
Q 043116          208 SN------DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDFQTQCIINC  280 (482)
Q Consensus       208 ~~------~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  280 (482)
                      ..      ......-...+++.+-..-.  ..  ....++..++.+.. ..++..+..++++++.++...+...  .. .
T Consensus       156 ~~~~~~~~~~~~~~l~~~il~~l~~~~~--~~--~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~--~l-~  228 (415)
T PF12460_consen  156 SSSTISEQQSRLVILFSAILCSLRKDVS--LP--DLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDD--DL-D  228 (415)
T ss_pred             cccccccccccHHHHHHHHHHcCCcccC--cc--CHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChh--hH-H
Confidence            11      11111222223333222111  00  11125667777654 4557889999999998886422211  11 1


Q ss_pred             CchHHHHHHhcCCCchhHHHH----HHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          281 GALRYLLGLLIHNHNKSIKKE----VCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       281 ~~i~~L~~ll~~~~~~~v~~~----a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      .++..+..-+.+...+..+..    ..|+.--+.. +++...      .++..|++++.+  +++...++.++.-+....
T Consensus       229 ~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~  300 (415)
T PF12460_consen  229 EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS--PELGQQAAKAFGILLSDS  300 (415)
T ss_pred             HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC--hhhHHHHHHHHhhHhcCc
Confidence            234444444411113333433    3455555544 333321      245667777775  678888999999887751


Q ss_pred             C-------HHHHHHHHHcC----ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          356 T-------HEQIKHLVREG----CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       356 ~-------~~~~~~l~~~~----~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      +       ....+.+..+.    .++.|++..+..+...+...+.+|..+++..+..-          +...+  ...++
T Consensus       301 ~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~v----------l~~~l--~~LlP  368 (415)
T PF12460_consen  301 DDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSV----------LLPEL--PTLLP  368 (415)
T ss_pred             HHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHH----------HHHHH--HHHHH
Confidence            1       12233444443    46777777777777788999999999998766532          12211  12466


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~  452 (482)
                      .+.+-+..++.++...+..++..+..+.
T Consensus       369 LLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  369 LLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            6666678888999999999998887766

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.38  E-value=0.0072  Score=60.64  Aligned_cols=223  Identities=12%  Similarity=0.097  Sum_probs=145.5

Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC
Q 043116           76 VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG  155 (482)
Q Consensus        76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~  155 (482)
                      +..+.++. +.++..+++.|..+... .+....+...+++...++.+++.++-+--+|+..+..+|.-.++        .
T Consensus       733 i~sl~d~q-vpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e--------~  802 (982)
T KOG4653|consen  733 ISSLHDDQ-VPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE--------D  802 (982)
T ss_pred             HHHhcCCc-ccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch--------h
Confidence            34444555 77899999999999873 35566677788999999999999999999999998888844332        3


Q ss_pred             ChHHHHHHHcchh---hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHH
Q 043116          156 ALIPLLAELNEHA---KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKI  232 (482)
Q Consensus       156 ~i~~l~~~l~~~~---~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~  232 (482)
                      +++.+...-.+..   .++.+-.+-.++.++..............++...+...++++...|..++..+++++.......
T Consensus       803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            5666666332221   1234444456667666654444444556777788888888888889999999999985433222


Q ss_pred             HHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHHHh---cCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          233 QAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCIIN---CGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~---~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      ...+ ..++..++.+. .+++..+|++|+..+..+..+.....-.+..   .+....+........+..++..|+.++-.
T Consensus       883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            1111 12334444544 3567789999999999998765543333322   23444455555555456677777766654


Q ss_pred             H
Q 043116          309 I  309 (482)
Q Consensus       309 l  309 (482)
                      +
T Consensus       962 i  962 (982)
T KOG4653|consen  962 I  962 (982)
T ss_pred             H
Confidence            4

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.35  E-value=0.011  Score=51.49  Aligned_cols=186  Identities=12%  Similarity=0.137  Sum_probs=124.1

Q ss_pred             CChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------hCCCC--h---hhHHHHHHHHhHhhcCChhhHH
Q 043116          209 NDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKL-------LGHRS--R---LVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       209 ~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~~~--~---~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      .+++.++.|+.-|+.--+..++..-.++.+ |.+..+++=       ++.+.  +   .-..+|+..+..++. +++...
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~   85 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRM   85 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHH
Confidence            367888888888887766666666666665 666666542       23222  1   123345555555565 777778


Q ss_pred             HHHhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116          276 CIINCGALRYLLGLLIHNH----NKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN  350 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~  350 (482)
                      .++++++.-.|..+|+...    -+.+|-...++++.+.. ++++.+..+++.+++|..++.++.++.-.|..|...+..
T Consensus        86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            8999998877777776542    35688889999999998 678888889999999999999999988888889988888


Q ss_pred             hhcCC--------CHHHHHHHHHcCChHHHHh-cCCCCCHHHHHHHHHHHHHHHHh
Q 043116          351 ATSGG--------THEQIKHLVREGCVKPLCD-LLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       351 l~~~~--------~~~~~~~l~~~~~l~~L~~-ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      +....        ++++...+..  ++..++. +.+.+++.+.+.++.+..++.+.
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~--vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAM--VLNKMVEQLVKQPSPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHH--HHHHHHHHHHHS--HHHHHHHHHHHHHHTTS
T ss_pred             HHcchhHHHHHhcCHHHHHHHHH--HHHHHHHHHccCCChhHHHHHHHHHHHHccC
Confidence            87632        3333333222  4444443 45578888999888888888754

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.35  E-value=0.23  Score=50.69  Aligned_cols=230  Identities=11%  Similarity=0.106  Sum_probs=150.0

Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH
Q 043116          122 LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV  201 (482)
Q Consensus       122 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  201 (482)
                      ..+..|.+.-.+.|+++.++.........+.  .++...++.+..+..+.++..++.+++..|.  +.........++..
T Consensus       459 ~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~--~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~--~~vl~~~~p~ild~  534 (1005)
T KOG2274|consen  459 VYQESPFLLLRAFLTISKFSSSTVINPQLLQ--HFLNATVNALTMDVPPPVKISAVRAFCGYCK--VKVLLSLQPMILDG  534 (1005)
T ss_pred             ccccCHHHHHHHHHHHHHHHhhhccchhHHH--HHHHHHHHhhccCCCCchhHHHHHHHHhccC--ceeccccchHHHHH
Confidence            3456677766899999988744322222211  1344555556455666777888888888773  33444445778888


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh--CCCChhhHHHHHHHHhHhhcCChhhHHHHHh
Q 043116          202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL--GHRSRLVLTAALRTIGNIVTGDDFQTQCIIN  279 (482)
Q Consensus       202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~  279 (482)
                      |.++......++......+|+..+..+++... ..+..+.|.+..+.  .+++|.+...+--++-.++.... ... -+.
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~-~~g-~m~  611 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAA-NYG-PMQ  611 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH-hhc-chH
Confidence            88888888999999999999999988776543 45556777766654  33566665555555554443111 000 112


Q ss_pred             cCchHHHHHHhcCCCc----hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhhcC
Q 043116          280 CGALRYLLGLLIHNHN----KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL-QDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       280 ~~~i~~L~~ll~~~~~----~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      ...+|.++..+..+ .    ......+.-.|..+.++.+.-....+-.-++|.+.++. .++|.++...+-.+|..+...
T Consensus       612 e~~iPslisil~~~-~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  612 ERLIPSLISVLQLN-ADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHHHHHHHHHHcCc-ccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            24789999999887 4    56677778888878875444343333334678777765 467888889999999999887


Q ss_pred             CCHHH
Q 043116          355 GTHEQ  359 (482)
Q Consensus       355 ~~~~~  359 (482)
                      +.++.
T Consensus       691 ~~eq~  695 (1005)
T KOG2274|consen  691 TLEQL  695 (1005)
T ss_pred             CHHHH
Confidence            44333

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=97.29  E-value=0.0019  Score=47.78  Aligned_cols=91  Identities=16%  Similarity=0.138  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCCh
Q 043116          174 RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSR  253 (482)
Q Consensus       174 ~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~  253 (482)
                      .-++.+|...+..-+.........+++.++..+.++++.+|..++.+|.+++.......- ..-..+++.|.+++.++++
T Consensus         4 ~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~~D~d~   82 (97)
T PF12755_consen    4 KGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLSADPDE   82 (97)
T ss_pred             hHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCch
Confidence            345566666665544445556688999999999999999999999999999965433221 1223678889999999999


Q ss_pred             hhHHHHHHHHhHh
Q 043116          254 LVLTAALRTIGNI  266 (482)
Q Consensus       254 ~v~~~a~~~L~~l  266 (482)
                      .|+..| ..|-++
T Consensus        83 ~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   83 NVRSAA-ELLDRL   94 (97)
T ss_pred             hHHHHH-HHHHHH
Confidence            988876 444444

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=97.29  E-value=0.011  Score=49.68  Aligned_cols=91  Identities=18%  Similarity=0.161  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhC-ChHHHHHH
Q 043116           85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG-ALIPLLAE  163 (482)
Q Consensus        85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~i~~l~~~  163 (482)
                      +.+|..++.+++.++...+...+     ..++.+...|.++++.+|..|+.+|..+...+.-     .-.| .+..++..
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~i-----k~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMI-----KVKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCce-----eehhhhhHHHHHH
Confidence            78999999999999886655433     3578999999999999999999999999844321     1112 23667777


Q ss_pred             HcchhhhhHHHHHHHHHHHhhcC
Q 043116          164 LNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       164 l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      + .+++++++..|..++..+...
T Consensus        72 l-~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 L-VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             H-cCCCHHHHHHHHHHHHHHHHh
Confidence            7 788999999999999999887

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.27  E-value=0.00083  Score=40.81  Aligned_cols=37  Identities=32%  Similarity=0.662  Sum_probs=33.7

Q ss_pred             hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116          273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT  310 (482)
Q Consensus       273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~  310 (482)
                      ....+.+.|+++.|++++.++ +++++..++|+|.|++
T Consensus         4 ~~~~i~~~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~   40 (41)
T smart00185        4 QKQAVVDAGGLPALVELLKSE-DEEVVKEAAWALSNLS   40 (41)
T ss_pred             HHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHc
Confidence            556788999999999999987 9999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.21  E-value=0.028  Score=45.27  Aligned_cols=124  Identities=15%  Similarity=0.157  Sum_probs=98.1

Q ss_pred             HHHHHHhCChHHHHHHHcchhh-----hhHHHHHHHHHHHhhcCCCCCChhh-hhhHHHHHHHHhccC--ChhHHHHHHH
Q 043116          148 RDFVLSQGALIPLLAELNEHAK-----LSMLRTATWTLSNFCRGKPQPPFNQ-IRPALRVLAQLIRSN--DEKVLTDACR  219 (482)
Q Consensus       148 ~~~~~~~~~i~~l~~~l~~~~~-----~~~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~ll~~~--~~~~~~~~l~  219 (482)
                      ...+...+++..|++++.+...     .++...++.++..|-..+ ...... ...++..++.+++.+  |..+...++.
T Consensus         4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg-~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa   82 (160)
T PF11841_consen    4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHG-IVSWDTLSDSFIKKIASYVNSSAMDASILQRSLA   82 (160)
T ss_pred             HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcC-cCchhhccHHHHHHHHHHHccccccchHHHHHHH
Confidence            3456788899999999966553     477888899999988875 333333 357888888888754  6889999999


Q ss_pred             HHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116          220 ALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       220 ~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  272 (482)
                      .|-++..+++.....+.+.=-++.|+..|..+++.++.+++..+..+....++
T Consensus        83 ILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~  135 (160)
T PF11841_consen   83 ILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD  135 (160)
T ss_pred             HHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence            99999988887676666666789999999999999999999988888765443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.18  E-value=0.016  Score=60.32  Aligned_cols=148  Identities=15%  Similarity=0.131  Sum_probs=117.7

Q ss_pred             hhhhhhHHHHHHHHhc----cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHh
Q 043116          192 FNQIRPALRVLAQLIR----SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNI  266 (482)
Q Consensus       192 ~~~~~~~~~~L~~ll~----~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l  266 (482)
                      ......+.|.++...+    .++|+++..|.-+|+.+..-+.+...     .-++.+...|. ++++.+|.++.-+++.+
T Consensus       914 k~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  914 KSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             HHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccch
Confidence            3344667888888885    45799999999999998866554332     34688888885 89999999999999999


Q ss_pred             hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHH
Q 043116          267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAA  345 (482)
Q Consensus       267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~  345 (482)
                      +...+....     -.-+.|...|.+. ++.||+.|..+|+++...      .++ -.|.++.+...+.+++.+++.-|-
T Consensus       989 av~fpnlie-----~~T~~Ly~rL~D~-~~~vRkta~lvlshLILn------dmiKVKGql~eMA~cl~D~~~~IsdlAk 1056 (1251)
T KOG0414|consen  989 AVRFPNLIE-----PWTEHLYRRLRDE-SPSVRKTALLVLSHLILN------DMIKVKGQLSEMALCLEDPNAEISDLAK 1056 (1251)
T ss_pred             hhhcccccc-----hhhHHHHHHhcCc-cHHHHHHHHHHHHHHHHh------hhhHhcccHHHHHHHhcCCcHHHHHHHH
Confidence            987666544     2445688899998 999999999999999863      223 368999999999999999999999


Q ss_pred             HHHHHhhcCCC
Q 043116          346 WVISNATSGGT  356 (482)
Q Consensus       346 ~aL~~l~~~~~  356 (482)
                      ..+..+...++
T Consensus      1057 ~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1057 SFFKELSSKGN 1067 (1251)
T ss_pred             HHHHHhhhccc
Confidence            88888887664

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.12  E-value=0.0047  Score=45.66  Aligned_cols=68  Identities=19%  Similarity=0.262  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043116          255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVID  322 (482)
Q Consensus       255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~  322 (482)
                      ++...+.+|+|++..++.....+.+.|+++.++..-.- ..+|.+|.-|.|++.|++.++++....+.+
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            46678899999999999999999999999999876643 238999999999999999998886554443

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=97.11  E-value=0.062  Score=49.53  Aligned_cols=173  Identities=14%  Similarity=0.106  Sum_probs=114.5

Q ss_pred             hhhHHHHHH-HHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-h
Q 043116          195 IRPALRVLA-QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-F  272 (482)
Q Consensus       195 ~~~~~~~L~-~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~  272 (482)
                      ..+++..++ +.+++.++.+|..++.||+-.+--+.+...     ..++.+...+..+++.++..|+.++..+....+ .
T Consensus        24 l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~   98 (298)
T PF12719_consen   24 LESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGID   98 (298)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCch
Confidence            346666554 788999999999999999998865543322     345677777777788999999999998875332 1


Q ss_pred             hHHHH-------HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh----cCChhHH
Q 043116          273 QTQCI-------INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ----DAEFGTK  341 (482)
Q Consensus       273 ~~~~l-------~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~----~~~~~~~  341 (482)
                      .....       ....+++.+.+.+.+. +++++..|+..++.+.....-.-    ...++..|+-..-    .++..++
T Consensus        99 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~Lr  173 (298)
T PF12719_consen   99 IFDSESDNDESVDSKSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLR  173 (298)
T ss_pred             hccchhccCccchHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHH
Confidence            11111       1235778888999998 99999999999999876211100    1124444444333    2456677


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 043116          342 KEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP  379 (482)
Q Consensus       342 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  379 (482)
                      ..-...+-..+.. ++.+... +...+++.+..+.+.+
T Consensus       174 Q~L~~Ffp~y~~s-~~~~Q~~-l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  174 QCLSVFFPVYASS-SPENQER-LAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHcC-CHHHHHH-HHHHHHHHHHHHHhCc
Confidence            7666677777664 5555444 5556677777666543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=97.11  E-value=0.0039  Score=62.92  Aligned_cols=185  Identities=19%  Similarity=0.189  Sum_probs=132.7

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh-------------HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSEN-------------TKVAIDHGAVPIFVKLLASPSDDVREQAVWALG  138 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~-------------~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~  138 (482)
                      ...|+.+|+.+   ++-..++.++.-+..+++..             ++.+. ..++|.|+......+...+..-+.+|.
T Consensus       817 a~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~Ls  892 (1030)
T KOG1967|consen  817 AEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALS  892 (1030)
T ss_pred             HHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHH
Confidence            44455666553   33444555555555544332             23333 257899999888888888889999999


Q ss_pred             HhhCCChhhHHHHHHh-CChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC---hhHH
Q 043116          139 NVAGDSSRCRDFVLSQ-GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND---EKVL  214 (482)
Q Consensus       139 ~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~  214 (482)
                      ++..+.|. +...-+. ..+|.|++.+ .-+|..++..+..++.-+....+.........++|.++.+-.+++   ..+|
T Consensus       893 hVl~~vP~-~vllp~~~~LlPLLLq~L-s~~D~~v~vstl~~i~~~l~~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR  970 (1030)
T KOG1967|consen  893 HVLTNVPK-QVLLPQFPMLLPLLLQAL-SMPDVIVRVSTLRTIPMLLTESETLQTEHLSTLVPYLLSLSSDNDNNMMVVR  970 (1030)
T ss_pred             HHHhcCCH-HhhccchhhHHHHHHHhc-CCCccchhhhHhhhhhHHHHhccccchHHHhHHHHHHHhcCCCCCcchhHHH
Confidence            99876654 2222111 2355555666 677888989999999999888877888888899999999877666   5789


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          215 TDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       215 ~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      ..|+.||..+.+.-+...-..+...++..+.+.|.++..-+|..|..+
T Consensus       971 ~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  971 EDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            999999999998555444445556788999999999998999998765

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.09  E-value=0.12  Score=44.44  Aligned_cols=185  Identities=11%  Similarity=0.120  Sum_probs=120.1

Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------hCC----CChhhHH-HHHHHHhHhhcCChhhHHH
Q 043116          210 DEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKL-------LGH----RSRLVLT-AALRTIGNIVTGDDFQTQC  276 (482)
Q Consensus       210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~----~~~~v~~-~a~~~L~~l~~~~~~~~~~  276 (482)
                      ++..++.++.-|+.--+..++....++.+ |....++.-       ++.    +...-|. +|+..+. ...++++....
T Consensus        37 ~~p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQ-cvASHpdTr~~  115 (293)
T KOG3036|consen   37 SPPTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQ-CVASHPDTRRA  115 (293)
T ss_pred             CCchHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHH-HHhcCcchHHH
Confidence            34556666666665554444444444444 433333321       111    1223343 3444444 44457777788


Q ss_pred             HHhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          277 IINCGALRYLLGLLIH----NHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       277 l~~~~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                      ++++.+--.+..+|..    ...+..|-.+.++|+.+.. ++.+.+..+...+++|..++.+..++...+.-|...+..+
T Consensus       116 FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKI  195 (293)
T KOG3036|consen  116 FLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKI  195 (293)
T ss_pred             HHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8888776666666654    3356789999999999998 6777778888999999999999999999999999999988


Q ss_pred             hcCCCHHHHHHHHH--------cCChHH-HHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          352 TSGGTHEQIKHLVR--------EGCVKP-LCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       352 ~~~~~~~~~~~l~~--------~~~l~~-L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..+.  ....++.+        ...+.. +.++.+.+++.+.++++.+..++...
T Consensus       196 lldD--~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  196 LLDD--VGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             hhcc--ccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC
Confidence            7743  22222111        112333 34456678888998898888888754

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.08  E-value=0.033  Score=56.15  Aligned_cols=222  Identities=11%  Similarity=0.171  Sum_probs=139.3

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhH
Q 043116          119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPA  198 (482)
Q Consensus       119 ~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~  198 (482)
                      +..++++-+.++..++..+..+.... .....+...+++...+..+ .+.|+-+.-+|...+..||.-.|       +.+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~L-kdedsyvyLnaI~gv~~Lcevy~-------e~i  803 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTL-KDEDSYVYLNAIRGVVSLCEVYP-------EDI  803 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHh-cccCceeeHHHHHHHHHHHHhcc-------hhh
Confidence            33445566778888999999998644 2335566677888888888 67777777788887777776532       567


Q ss_pred             HHHHHHH-hccC---ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH
Q 043116          199 LRVLAQL-IRSN---DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT  274 (482)
Q Consensus       199 ~~~L~~l-l~~~---~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~  274 (482)
                      +|.+... .+..   .++.+..+-.++.++...-.+......+ -++..+++.+++++...|..++..+++++.-.....
T Consensus       804 l~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~v  882 (982)
T KOG4653|consen  804 LPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQV  882 (982)
T ss_pred             HHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhh
Confidence            7777763 3322   1344555556666666443333222222 456677777888888899999999999986444222


Q ss_pred             HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh-cCChhHHHHHHHHHHH
Q 043116          275 QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQ-DAEFGTKKEAAWVISN  350 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~-~~~~~~~~~a~~aL~~  350 (482)
                      ...+ ......++.+.+.+.+.-+|+.|+-.+..+-.+.....-.+..   .+....+..+.. +++..++..++.++..
T Consensus       883 sd~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  883 SDFF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             hHHH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            2111 1345566677766658889999999999988755443333332   123333344443 3445566666666554


Q ss_pred             h
Q 043116          351 A  351 (482)
Q Consensus       351 l  351 (482)
                      +
T Consensus       962 i  962 (982)
T KOG4653|consen  962 I  962 (982)
T ss_pred             H
Confidence            4

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.05  E-value=0.11  Score=51.02  Aligned_cols=255  Identities=13%  Similarity=0.102  Sum_probs=134.6

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI  195 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~  195 (482)
                      ..++...+ ++...+..|...|..+..+-|..++.     ++..++.++ .+.|..++..|...|..+|.+.+    ...
T Consensus        26 ~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~----~~v   94 (556)
T PF05918_consen   26 KEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNP----EHV   94 (556)
T ss_dssp             HHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHH-T-SSHHHHHHHHHHGGGG--T------T-H
T ss_pred             HHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHH----HHH
Confidence            34455555 57889999999999999888887665     466899999 78889999999999999998742    345


Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC---CCChhhHHHHHHHHhHhhcC-Ch
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIVTG-DD  271 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~l~~~-~~  271 (482)
                      ..+...|+++|.++++.-...+=.+|..+...++..        .+..+...+.   .+++.+|..++..|..=... ..
T Consensus        95 ~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~--------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~  166 (556)
T PF05918_consen   95 SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG--------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKP  166 (556)
T ss_dssp             HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH--------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-T
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH--------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcH
Confidence            788899999999999888888888887777554422        2344444443   46777999998877533321 11


Q ss_pred             hhHH--HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc----CCHHHHHHHHHcCChHHHHHH---HhcCChhHHH
Q 043116          272 FQTQ--CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA----GNREQIQAVIDAGLIGPIVNL---LQDAEFGTKK  342 (482)
Q Consensus       272 ~~~~--~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~----~~~~~~~~l~~~~~i~~L~~l---l~~~~~~~~~  342 (482)
                      +...  .-.+.-++..+.++|.+- ...--.....+|..+-.    .+....+.+++  ++....++   +...+++...
T Consensus       167 ~~~~p~~E~e~~i~~~ikkvL~DV-TaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~--ii~eQa~Ld~~f~~sD~e~Id  243 (556)
T PF05918_consen  167 ELLTPQKEMEEFIVDEIKKVLQDV-TAEEFELFMSLLKSLKIYGGKQTIEGRQELVD--IIEEQADLDQPFDPSDPESID  243 (556)
T ss_dssp             TTS---HHHHHHHHHHHHHHCTT---HHHHHHHHHHHHTSGG---GSSHHHHHHHHH--HHHHHHTTTS---SSSHHHHH
T ss_pred             HHhhchHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHhCccccccCChHHHHHHHH--HHHHHhccCCCCCCcCHHHHH
Confidence            1111  112223455666777654 22222233344444433    23444444443  22221111   1223445444


Q ss_pred             HHHHHHHH----hhcCC-CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          343 EAAWVISN----ATSGG-THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       343 ~a~~aL~~----l~~~~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..+.++..    +.... +.....++.+ .+++.+.++    ..+.+...+..+.-+..+
T Consensus       244 rli~C~~~Alp~fs~~v~Sskfv~y~~~-kvlP~l~~l----~e~~kl~lLk~lAE~s~~  298 (556)
T PF05918_consen  244 RLISCLRQALPFFSRGVSSSKFVNYMCE-KVLPKLSDL----PEDRKLDLLKLLAELSPF  298 (556)
T ss_dssp             HHHHHHHHHGGG-BTTB--HHHHHHHHH-HTCCCTT---------HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHhcCCCChHHHHHHHHH-HhcCChhhC----ChHHHHHHHHHHHHHcCC
Confidence            44444433    22221 3334444444 466666555    223444444444444433

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.016  Score=57.96  Aligned_cols=241  Identities=14%  Similarity=0.069  Sum_probs=157.5

Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHH-HhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG-NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL  180 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  180 (482)
                      ...-+...++.|+...|+++.....+..+.....+|. .+.......      ...++++.+.+.++..-.-...++.++
T Consensus       493 ~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~------~~v~~~~~s~~~~d~~~~en~E~L~al  566 (748)
T KOG4151|consen  493 EKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERS------YEVVKPLDSALHNDEKGLENFEALEAL  566 (748)
T ss_pred             hHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCch------hhhhhhhcchhhhhHHHHHHHHHHHHh
Confidence            3444566778899999999988888887777777777 443222111      124666666663333222234488888


Q ss_pred             HHhhcCCCCCChhhh-hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCCCChhhHHH
Q 043116          181 SNFCRGKPQPPFNQI-RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGHRSRLVLTA  258 (482)
Q Consensus       181 ~~L~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~  258 (482)
                      .||+..+......+. .-.++.+-.++..+++..+..++.++.||.-+..-..+.+.+. ..++.....+..........
T Consensus       567 tnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA  646 (748)
T KOG4151|consen  567 TNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELA  646 (748)
T ss_pred             hcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhh
Confidence            988887644333333 4556667777888899999999999999997665555555553 34455555555566677777


Q ss_pred             HHHHHhHhhcCChhhHH-HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043116          259 ALRTIGNIVTGDDFQTQ-CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE  337 (482)
Q Consensus       259 a~~~L~~l~~~~~~~~~-~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  337 (482)
                      ++.++..+.......+. ..--..+...+..++.+. +..++......+.|+.....+....++....++.+..+-.-..
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNLFEALFEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence            77777766665554444 333346788899999999 9999999999999976666665666666666666655544333


Q ss_pred             hhHHHHHHHHHH
Q 043116          338 FGTKKEAAWVIS  349 (482)
Q Consensus       338 ~~~~~~a~~aL~  349 (482)
                      ...++.+..+|.
T Consensus       726 a~~~~~~~~~l~  737 (748)
T KOG4151|consen  726 APKREDAAPCLS  737 (748)
T ss_pred             hhhhhhhhhHHH
Confidence            334444444433

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.97  E-value=0.15  Score=48.10  Aligned_cols=147  Identities=12%  Similarity=0.127  Sum_probs=106.1

Q ss_pred             ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHH-HHHHhccCCcHHHHH
Q 043116          156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACR-ALAYLADGTNDKIQA  234 (482)
Q Consensus       156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~-~L~~l~~~~~~~~~~  234 (482)
                      ++..++..+.+..+...+..|+.+|..++...+..-+...+-++..+++.-.+.++++...|.. |+..++.+.+...  
T Consensus       330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--  407 (516)
T KOG2956|consen  330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--  407 (516)
T ss_pred             HHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--
Confidence            4566777886667888889999999999999876666666777777887777777766665555 4555556655432  


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                            +..+..++...+......++..+..++..-....-..+-..+.|.+++...+. +..||+.|+++|..+..
T Consensus       408 ------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~-SS~VRKtaVfCLVamv~  477 (516)
T KOG2956|consen  408 ------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDST-SSTVRKTAVFCLVAMVN  477 (516)
T ss_pred             ------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCc-hHHhhhhHHHhHHHHHH
Confidence                  34555666556777777788888888764432222223347899999999999 99999999999998865

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.13  Score=51.14  Aligned_cols=172  Identities=17%  Similarity=0.197  Sum_probs=107.5

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116          242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI  321 (482)
Q Consensus       242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  321 (482)
                      +.+-+++.+.+|-+|.....+++---.+..       +.+++..|+..--+..+.+||+.|+-+|+-++..+|+.     
T Consensus       522 ~lI~el~~dkdpilR~~Gm~t~alAy~GTg-------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-----  589 (929)
T KOG2062|consen  522 PLIKELLRDKDPILRYGGMYTLALAYVGTG-------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-----  589 (929)
T ss_pred             HHHHHHhcCCchhhhhhhHHHHHHHHhccC-------chhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-----
Confidence            344455666677777766555542211111       12567777777444448999999999999999988884     


Q ss_pred             HcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          322 DAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       322 ~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                          .+..+++|. +-++.||..++.||+-.+.+.....        ++..|..+.+++..-|+..|+-++.-++.....
T Consensus       590 ----~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e--------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~  657 (929)
T KOG2062|consen  590 ----LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE--------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTE  657 (929)
T ss_pred             ----chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH--------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence                444555665 5689999999999998877533221        466677777777778999898888877643221


Q ss_pred             ccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHH-HHHHHHHHHhcC
Q 043116          401 EKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIH-EMSVKILETYWC  450 (482)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~-~~a~~~l~~~~~  450 (482)
                        .      .++-..     +..+.+.++..+.+++.- +...-+-+.+.+
T Consensus       658 --~------~~pkv~-----~frk~l~kvI~dKhEd~~aK~GAilAqGild  695 (929)
T KOG2062|consen  658 --Q------LCPKVN-----GFRKQLEKVINDKHEDGMAKFGAILAQGILD  695 (929)
T ss_pred             --c------cCchHH-----HHHHHHHHHhhhhhhHHHHHHHHHHHhhhhh
Confidence              1      111122     234556666666665553 444444344433

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.93  E-value=0.061  Score=50.96  Aligned_cols=222  Identities=12%  Similarity=0.107  Sum_probs=131.0

Q ss_pred             HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchh
Q 043116           90 EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHA  168 (482)
Q Consensus        90 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~  168 (482)
                      .|+++|-.+....+.....+.+.+++..+++.++.+-....+.  .-...-.... +..+.....       -..+ ...
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~i-~~~   72 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE--NKNEEAGSGIPPEYKESSVD-------GYSI-SYQ   72 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc--ccccCCCCCCCCCccccccc-------cccc-CHH
Confidence            4677777777767777788889999999999886432222111  0000000010 011000000       0000 111


Q ss_pred             hhhHHHHHHHHHHHhhc-CC--CCC-Chhhh-hhHHHHHHHHhccCC---hhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043116          169 KLSMLRTATWTLSNFCR-GK--PQP-PFNQI-RPALRVLAQLIRSND---EKVLTDACRALAYLADGTNDKIQAVIEAGV  240 (482)
Q Consensus       169 ~~~~~~~a~~~L~~L~~-~~--~~~-~~~~~-~~~~~~L~~ll~~~~---~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  240 (482)
                      .....+..+.++..+.. ..  ... ..... ..++..|..++.+..   +.+...++..+..+..+.+.....+.+.|+
T Consensus        73 r~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl  152 (379)
T PF06025_consen   73 RQQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGL  152 (379)
T ss_pred             HHHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCC
Confidence            12233334444444444 22  111 11222 345666777777653   789999999999999888888888999999


Q ss_pred             HHHHHHhhC-C---CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch------hHHHHHHHHHHHHh
Q 043116          241 CPRLVKLLG-H---RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK------SIKKEVCWIISNIT  310 (482)
Q Consensus       241 l~~L~~ll~-~---~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~------~v~~~a~~~L~nl~  310 (482)
                      .+.++..+. .   ++.++....-.+++.||- +....+.+.+.+.++.+++++.++...      +.-......+-.+.
T Consensus       153 ~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~  231 (379)
T PF06025_consen  153 IDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELM  231 (379)
T ss_pred             hHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHH
Confidence            999999887 4   456677777778888887 555567788899999999999886321      12222333444455


Q ss_pred             cCCHHHHHHHHH
Q 043116          311 AGNREQIQAVID  322 (482)
Q Consensus       311 ~~~~~~~~~l~~  322 (482)
                      ++.|..+..+++
T Consensus       232 RH~p~Lk~~i~~  243 (379)
T PF06025_consen  232 RHHPSLKPDIID  243 (379)
T ss_pred             ccCHHHHHHHHH
Confidence            566665444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=96.91  E-value=0.12  Score=47.55  Aligned_cols=191  Identities=18%  Similarity=0.159  Sum_probs=116.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH--hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC--CCCC
Q 043116          115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS--QGALIPLLAELNEHAKLSMLRTATWTLSNFCRG--KPQP  190 (482)
Q Consensus       115 i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~--~~~~  190 (482)
                      +...+..+.+.....|+.++..+.++...... .+.+..  .-++..+.+.+++... +-+..|+.++.-++-.  ....
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~  122 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGED  122 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCcc
Confidence            34445555667788999999999888744332 222221  1235566666644333 4445566666666554  2344


Q ss_pred             ChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhc---cCCcHHHHHHHHhCcHHHH--HHhhC----------CCCh
Q 043116          191 PFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLA---DGTNDKIQAVIEAGVCPRL--VKLLG----------HRSR  253 (482)
Q Consensus       191 ~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~---~~~~~~~~~~~~~~~l~~L--~~ll~----------~~~~  253 (482)
                      ...++..+.|.|...+.+..  +.++..++.+|+-++   ....+.....++  .+..+  ....+          .+++
T Consensus       123 ~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~  200 (309)
T PF05004_consen  123 SEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDA  200 (309)
T ss_pred             HHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCcc
Confidence            55677889999999988654  456667776766554   333333221111  22211  11121          1235


Q ss_pred             hhHHHHHHHHhHhhcCChhh-HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          254 LVLTAALRTIGNIVTGDDFQ-TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      .+...|+.+.+-|...-+.. ..... ...++.|..+|+++ +..||..|..+|+-+..
T Consensus       201 ~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  201 ALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYE  257 (309)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            68888888888887655542 22222 34689999999999 99999999999988754

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.90  E-value=0.013  Score=48.00  Aligned_cols=144  Identities=15%  Similarity=0.162  Sum_probs=100.7

Q ss_pred             HHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116          242 PRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA  319 (482)
Q Consensus       242 ~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~  319 (482)
                      +.++..+.  ...+++|..+.-++..+.   +.. +.-....+-+.+-..+... +.+-...++.++..+....++....
T Consensus         6 ~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~-~~~~~~~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    6 DTLLTSLDMLRQPEEVRSHALVILSKLL---DAA-REEFKEKISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHhcccCCCHhHHHHHHHHHHHHH---HHh-HHHHHHHHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHHHHH
Confidence            44555444  356678999988888884   211 2122223444555666665 6667788999999998888888877


Q ss_pred             HH-HcCChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHH-HHHHHHHHHHH
Q 043116          320 VI-DAGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQ-IVTVCLIGLEN  393 (482)
Q Consensus       320 l~-~~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~-v~~~~l~~L~~  393 (482)
                      ++ ..|+++.++.+..  ..+..++..++.+|..-+.  +...+.. +...+++.|.+.++ ++++. ++..++-+|.+
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~--d~~~r~~-I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI--DKSCRTF-ISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT--SHHHHHC-CHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc--cHHHHHH-HHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            77 6889999999999  7888899999999988776  4444444 55567999999996 45555 77777766654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.88  E-value=0.25  Score=47.01  Aligned_cols=113  Identities=16%  Similarity=0.165  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC--hhh
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD--DFQ  273 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~  273 (482)
                      ..++..+..-..+++..++..++++|++.+...++........-+...+..+....+.+|...++.+|..+...-  ...
T Consensus       257 ~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l  336 (533)
T KOG2032|consen  257 GSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDL  336 (533)
T ss_pred             HHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcch
Confidence            444444555555778889999999999999886666555444333333334445566889999999988776421  111


Q ss_pred             HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      ...+  .++.-.+..+..+. ++++|..+...++.++.
T Consensus       337 ~~~~--l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~  371 (533)
T KOG2032|consen  337 ESYL--LNIALRLRTLFDSE-DDKMRAAAFVLFGALAK  371 (533)
T ss_pred             hhhc--hhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHH
Confidence            1111  13455677788888 88999999888888875

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.86  E-value=0.0034  Score=47.69  Aligned_cols=73  Identities=21%  Similarity=0.310  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          196 RPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       196 ~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ..++..|+.+|. +.|+.+..-||.-|+.++...+.....+-+.|+=..++.+|.+++++|+..|+.++..+..
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            467888999994 5578889999999999998888887777777999999999999999999999999988765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.86  E-value=0.24  Score=47.03  Aligned_cols=257  Identities=14%  Similarity=0.095  Sum_probs=141.3

Q ss_pred             CCCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh-hhhhHHH
Q 043116          123 ASPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN-QIRPALR  200 (482)
Q Consensus       123 ~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~-~~~~~~~  200 (482)
                      .+++..++..|+++|+|.+..-|. .+..  ..-.+..++.-|.+..+.+++-.+..+|..+.......... ..-++.-
T Consensus       268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th--~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ial  345 (533)
T KOG2032|consen  268 TDPSAKSRGMACRGLGNTASGAPDKVRTH--KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIAL  345 (533)
T ss_pred             cCchhHHHHHHHHHHHHHhccCcHHHHHh--HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHH
Confidence            457789999999999999977433 3222  22246666776757777889999998888887764332222 2345555


Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhccCCcHHHHH-HHH--hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          201 VLAQLIRSNDEKVLTDACRALAYLADGTNDKIQA-VIE--AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       201 ~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~-~~~--~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      .+..++.+.+++.+..+...++.++.......+. +.+  .+-...++-.+.++++.+.. ||+.....+..+-. .+.+
T Consensus       346 rlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~-ACr~~~~~c~p~l~-rke~  423 (533)
T KOG2032|consen  346 RLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVAR-ACRSELRTCYPNLV-RKEL  423 (533)
T ss_pred             HHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHH-HHHHHHHhcCchhH-HHHH
Confidence            6778888999999999999888887432221121 221  12234455556677775544 55555555432211 1111


Q ss_pred             HhcCchHHHHHHhcCCCch-hHHHH-HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          278 INCGALRYLLGLLIHNHNK-SIKKE-VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~-~v~~~-a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      .  ++++..   + .. +. ..+.- .-| ...+....++....+..     ...-++++.-+.++..+...-.+...+-
T Consensus       424 ~--~~~q~~---l-d~-~~~~~q~Fyn~~-c~~L~~i~~d~l~~~~t-----~~~~~f~sswe~vr~aavl~t~~~vd~l  490 (533)
T KOG2032|consen  424 Y--HLFQES---L-DT-DMARFQAFYNQW-CIQLNHIHPDILMLLLT-----EDQHIFSSSWEQVREAAVLKTTRSVDSL  490 (533)
T ss_pred             H--HHHhhh---h-HH-hHHHHHHHHHHH-HHHHhhhCHHHHHHHHH-----hchhheecchHHHHHHHHHHHHHHHHHh
Confidence            1  122211   1 11 11 11111 111 11122222332222221     1112223333455665555555555544


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                      .+..+....-......+..+...+-+++...+..++..+..
T Consensus       491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            44444444444456667778888999999999999988764

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.80  E-value=0.1  Score=48.11  Aligned_cols=107  Identities=12%  Similarity=0.095  Sum_probs=82.5

Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVI  321 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~  321 (482)
                      .+.+.++++++.+|..++.|||-.+--+.....     ..++.+...++.+ +..++..|+.++..+.. +.........
T Consensus        31 lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~-~~~v~~~al~~l~Dll~~~g~~~~~~~~  104 (298)
T PF12719_consen   31 LILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD-DEEVKITALKALFDLLLTHGIDIFDSES  104 (298)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCchhccchh
Confidence            344788999999999999999998876664433     3466777888777 89999999999999986 3333332222


Q ss_pred             -------HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          322 -------DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       322 -------~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                             ...++..+.+.+.+.+++++..|+.+++.+...+
T Consensus       105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~  145 (298)
T PF12719_consen  105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG  145 (298)
T ss_pred             ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence                   2456778888888899999999999999998755

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=96.79  E-value=0.21  Score=49.68  Aligned_cols=193  Identities=13%  Similarity=0.149  Sum_probs=138.4

Q ss_pred             hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh
Q 043116          194 QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ  273 (482)
Q Consensus       194 ~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  273 (482)
                      ...+++|.+++++...|..+|...+.-+-....+-+   ...++..+++.+...+.+.++.+|+.++.++..++..-...
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh
Confidence            446899999999999999999998888877775543   34677789999999999999999999999999888532222


Q ss_pred             HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116          274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL-IGPIVNLLQDAEFGTKKEAAWVISNAT  352 (482)
Q Consensus       274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~~~~~a~~aL~~l~  352 (482)
                         .++...+..+...-.+. +..+|....-+++.++.......    ..++ ...+.+-+.++-...|..+.+++..-.
T Consensus       404 ---~Ln~Ellr~~ar~q~d~-~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  404 ---NLNGELLRYLARLQPDE-HGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             ---hhcHHHHHHHHhhCccc-cCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence               23334455555555534 78899888888888876422211    2233 334555566666777888888877665


Q ss_pred             cCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116          353 SGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       353 ~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~  401 (482)
                      ..-+...    +...+++.+.-+.-+++..++..+..++..+....++.
T Consensus       476 ~~~~~~~----va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSE----VANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhh----hhhhccccccccccCcccchhhHHHHHHHHHHhhhhhh
Confidence            4222111    34568888999999999999999999988887765554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.74  E-value=0.07  Score=46.64  Aligned_cols=198  Identities=12%  Similarity=0.039  Sum_probs=123.9

Q ss_pred             ChhhHHHHHHHHhHhhcCChhhHHHHHhc-CchHHHHHHhcC-------CC-chhHHHHHHHHH--HHHhcCCHHHHHHH
Q 043116          252 SRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYLLGLLIH-------NH-NKSIKKEVCWII--SNITAGNREQIQAV  320 (482)
Q Consensus       252 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~-------~~-~~~v~~~a~~~L--~nl~~~~~~~~~~l  320 (482)
                      +++.|+.|+.-|+.--...++..-.++.. |.+..|++=+-+       +. ....-...|.+|  -.+....|+.+..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            56678888887777665556666666655 555554432211       10 111122233333  22333467878899


Q ss_pred             HHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          321 IDAGLIGPIVNLLQDA-----EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       321 ~~~~~i~~L~~ll~~~-----~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +++++.--|..++...     -+.+|.....+++.++...+++...++.+.++++.....++.++.-.+..|..++.+++
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL  167 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKIL  167 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            9999877777777632     35789999999999999989999999999999999999999998888888999999998


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      .......-.+  .+.+.|.....-.  -..+.++...+++++-+...++..++.++..
T Consensus       168 ~dd~GL~yiC--~t~eRf~av~~vL--~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  168 LDDVGLNYIC--QTAERFFAVAMVL--NKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HSHHHHHHHT--SSHHHHHHHHHHH--HHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             cchhHHHHHh--cCHHHHHHHHHHH--HHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            7655543322  1222222222111  1234455677888887777777776665553

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.72  E-value=0.0034  Score=47.66  Aligned_cols=73  Identities=14%  Similarity=0.175  Sum_probs=61.3

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      .++..|+++|..+.++.+..-||.=|+.++...|..+..+-+.|+-..+++++.++|++++.+|+.++..+..
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3678899999665588899999999999999778877777788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.67  E-value=0.27  Score=42.32  Aligned_cols=147  Identities=14%  Similarity=0.156  Sum_probs=103.3

Q ss_pred             hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-----CChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchH
Q 043116          211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-----RSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALR  284 (482)
Q Consensus       211 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~  284 (482)
                      +.-...++..+..++++.+ ....+.+..+--.+..+|..     +.+..|..+++.|+.+...++ +....+...+++|
T Consensus        93 snRVcnaL~LlQcvASHpd-Tr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP  171 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASHPD-TRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP  171 (293)
T ss_pred             cchHHHHHHHHHHHhcCcc-hHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence            3445556666666776654 55567777765566676643     346689999999999998654 5667788899999


Q ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------cCChHH-HHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          285 YLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--------AGLIGP-IVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       285 ~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~~i~~-L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      ..++.++.+ +..-|..|.+++..+...+.. ..++..        ..++.. +.++.+.+++.+.+.++++..+++.  
T Consensus       172 lCLrime~G-SelSKtvA~fIlqKIlldD~G-L~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd--  247 (293)
T KOG3036|consen  172 LCLRIMESG-SELSKTVATFILQKILLDDVG-LYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD--  247 (293)
T ss_pred             HHHHHHhcc-cHHHHHHHHHHHHHHhhcccc-HHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC--
Confidence            999999999 888999999999998764322 333322        112333 3334456788999999999999987  


Q ss_pred             CHHHHHH
Q 043116          356 THEQIKH  362 (482)
Q Consensus       356 ~~~~~~~  362 (482)
                      ++..+..
T Consensus       248 nprar~a  254 (293)
T KOG3036|consen  248 NPRARAA  254 (293)
T ss_pred             CHHHHHH
Confidence            4444333

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=96.66  E-value=0.063  Score=50.49  Aligned_cols=183  Identities=14%  Similarity=0.110  Sum_probs=110.4

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcH-HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           29 LPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPI-EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        29 i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +..+++.++ ++..+-+..|+.-|..+.+.+ ...+ ++-. ..++..+++.|.+..++..+..|+++|..++...+.. 
T Consensus       288 v~~~l~~~~g~e~a~~~k~alsel~~m~~e~-sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~-  364 (516)
T KOG2956|consen  288 VADLLKEISGSERASERKEALSELPKMLCEG-SFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPAR-  364 (516)
T ss_pred             HHHHHHhccCccchhHHHHHHHHHHHHHHcc-chhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHh-
Confidence            444455554 345666777888888888875 2222 2111 2355667777877333788999999999999854432 


Q ss_pred             HHHHhC--CChHHHHHhhCCCCHHHHH-HHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          107 KVAIDH--GAVPIFVKLLASPSDDVRE-QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       107 ~~~~~~--g~i~~L~~ll~~~~~~~~~-~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                        +.+.  -.+..+++.-.+..+++.. ++=.++..++...|.. .       +..+..++ .+.|.+....++..+..+
T Consensus       365 --l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~-~-------I~~i~~~I-lt~D~~~~~~~iKm~Tkl  433 (516)
T KOG2956|consen  365 --LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ-C-------IVNISPLI-LTADEPRAVAVIKMLTKL  433 (516)
T ss_pred             --hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh-H-------HHHHhhHH-hcCcchHHHHHHHHHHHH
Confidence              2221  1344444444445454444 3444555555555542 1       22233333 235555555566666666


Q ss_pred             hcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          184 CRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       184 ~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      +..-+.. -......+.|.+++...+....+|..+..||..+.
T Consensus       434 ~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv  476 (516)
T KOG2956|consen  434 FERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMV  476 (516)
T ss_pred             HhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHH
Confidence            6653221 22234788999999999999999999999998776

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.65  E-value=0.71  Score=48.00  Aligned_cols=207  Identities=16%  Similarity=0.229  Sum_probs=127.2

Q ss_pred             HhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---hhh----hhHHHHHH
Q 043116          110 IDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---HAK----LSMLRTAT  177 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~~----~~~~~~a~  177 (482)
                      .+.|++..++..+.+     ....+....+..|...+ ..+.+|+.+.+.++++.|+..+..   ...    ..+.+..+
T Consensus       114 ~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~-Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  114 AECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCC-KVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHH-hhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            356889999988875     23345555666666665 457789999999999999998852   222    45555555


Q ss_pred             HHHHHhhcCCCCCCh-------------hhhhhHHHHHHHHhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCc
Q 043116          178 WTLSNFCRGKPQPPF-------------NQIRPALRVLAQLIRS----NDEKVLTDACRALAYLADGTNDKIQAVIEAGV  240 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~-------------~~~~~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~  240 (482)
                      .++-.+.........             .....-+..+++.+.+    .++.+....++.|.+++.++.+..+.+++.  
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--
Confidence            555555543211111             0123446666666654    468999999999999999988887776652  


Q ss_pred             HHHHHHhhCC-----CChhhHHHHHHHHhHhhcCC------hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHH
Q 043116          241 CPRLVKLLGH-----RSRLVLTAALRTIGNIVTGD------DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI  309 (482)
Q Consensus       241 l~~L~~ll~~-----~~~~v~~~a~~~L~~l~~~~------~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl  309 (482)
                      +...+.+=.-     ++..+   .+.++..++.+-      ......+++.|++...+..|... -|..           
T Consensus       271 F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~-~P~~-----------  335 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKH-FPSL-----------  335 (802)
T ss_pred             HHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHh-Cccc-----------
Confidence            2222222111     12222   244444444321      25566788889999888888766 4433           


Q ss_pred             hcCCHHHHHHHHHcCChHHHHHHHh
Q 043116          310 TAGNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       310 ~~~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      ...+...+..++....+|..+++|.
T Consensus       336 ~~~~s~eWk~~l~~psLp~iL~lL~  360 (802)
T PF13764_consen  336 KNTDSPEWKEFLSRPSLPYILRLLR  360 (802)
T ss_pred             ccCCCHHHHHHhcCCcHHHHHHHHH
Confidence            1112334677777778888777776

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.13  Score=49.67  Aligned_cols=151  Identities=17%  Similarity=0.195  Sum_probs=102.2

Q ss_pred             HHHHHhccCChhHHHHHHHHHHH--hccCCcHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          201 VLAQLIRSNDEKVLTDACRALAY--LADGTNDKIQAVIEAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       201 ~L~~ll~~~~~~~~~~~l~~L~~--l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      .+.+++.+.++-.|.....++..  ....+         .+++..++.. .++.+.+||+.|..+|+-++..++.     
T Consensus       520 ~I~ell~d~ds~lRy~G~fs~alAy~GTgn---------~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~-----  585 (926)
T COG5116         520 YINELLYDKDSILRYNGVFSLALAYVGTGN---------LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD-----  585 (926)
T ss_pred             HHHHHhcCchHHhhhccHHHHHHHHhcCCc---------chhHhhhheeecccCchHHHHHHHHheeeeEecCcc-----
Confidence            55667777777777666555432  22222         2556777776 6778899999999999998875544     


Q ss_pred             HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCH
Q 043116          278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH  357 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~  357 (482)
                          .+...+++|..+.++.||...+.+|+-.|.++....       .+..|-.++.+.+.-+|..|+.+++-+...+++
T Consensus       586 ----~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~  654 (926)
T COG5116         586 ----LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILMQCNP  654 (926)
T ss_pred             ----hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCc
Confidence                455677778777789999999999999888544421       344445556677888999999999988876655


Q ss_pred             HHHHHHHHcCChHHHHhcCCC
Q 043116          358 EQIKHLVREGCVKPLCDLLPC  378 (482)
Q Consensus       358 ~~~~~l~~~~~l~~L~~ll~~  378 (482)
                      +.-..+  .++...+.++..+
T Consensus       655 ~Lnp~v--~~I~k~f~~vI~~  673 (926)
T COG5116         655 ELNPNV--KRIIKKFNRVIVD  673 (926)
T ss_pred             ccChhH--HHHHHHHHHHHhh
Confidence            432221  1244555555443

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.59  E-value=0.27  Score=48.84  Aligned_cols=108  Identities=19%  Similarity=0.200  Sum_probs=80.8

Q ss_pred             hhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hh
Q 043116          194 QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DF  272 (482)
Q Consensus       194 ~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~  272 (482)
                      ...+.+..++....+++..+|..++..|..+.....+. ...+-.++...+..-+.+..|.||..|+.+|..+-... ++
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~ei-dd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEI-DDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhcccccc-CHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            55677777777788899999999999999988643322 22333467778888889999999999999999987422 22


Q ss_pred             hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      .      ..+...+..+++..++++||+.|...+.+
T Consensus       161 e------~~v~n~l~~liqnDpS~EVRRaaLsnI~v  190 (892)
T KOG2025|consen  161 E------CPVVNLLKDLIQNDPSDEVRRAALSNISV  190 (892)
T ss_pred             c------ccHHHHHHHHHhcCCcHHHHHHHHHhhcc
Confidence            2      23566788889888899999987655543

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.55  E-value=0.91  Score=44.78  Aligned_cols=253  Identities=14%  Similarity=0.101  Sum_probs=143.1

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH
Q 043116           40 DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV  119 (482)
Q Consensus        40 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~  119 (482)
                      ..+.+..++..|..+..... . .......-    +.+.+.....++.-..-+.+|..++.+..+.  ...+.++.+.|.
T Consensus        42 p~e~R~~~~~ll~~~i~~~~-~-~~~~~R~~----fF~~I~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~  113 (464)
T PF11864_consen   42 PSEARRAALELLIACIKRQD-S-SSGLMRAE----FFRDISDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLL  113 (464)
T ss_pred             CHHHHHHHHHHHHHHHHccc-c-ccHHHHHH----HHHHHhcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHH
Confidence            46778888888888887642 1 11111211    2223333222333334455666666655444  225667777777


Q ss_pred             HhhCCC---------------------------CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhH
Q 043116          120 KLLASP---------------------------SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSM  172 (482)
Q Consensus       120 ~ll~~~---------------------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~  172 (482)
                      ..+..-                           +.......+..+.|+...+...-+.-.-.+.+..++.+...+.....
T Consensus       114 ~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~d  193 (464)
T PF11864_consen  114 SWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDD  193 (464)
T ss_pred             HHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHH
Confidence            666310                           12223344555556654432211111122356666666656666666


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--
Q 043116          173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--  250 (482)
Q Consensus       173 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--  250 (482)
                      ...++.++-.+.... .........++..|+......  +....+-.++.||+......       ..+..|..+|.+  
T Consensus       194 i~~~L~vldaii~y~-~iP~~sl~~~i~vLCsi~~~~--~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~  263 (464)
T PF11864_consen  194 IEACLSVLDAIITYG-DIPSESLSPCIEVLCSIVNSV--SLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPD  263 (464)
T ss_pred             HHHHHHHHHHHHHcC-cCChHHHHHHHHHHhhHhccc--ccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccC
Confidence            677777777777664 233444566677777664433  56666777888888543221       235677777732  


Q ss_pred             ----CChhhHHHHHHHHhHhhcCChhhHHHHHh-c--CchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          251 ----RSRLVLTAALRTIGNIVTGDDFQTQCIIN-C--GALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       251 ----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~--~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                          ++..+..-|+..+..+..+..+....-+. .  -+++.+...++.+ ++.+-.+....+.++..
T Consensus       264 ~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  264 PQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-SPRVDYEILLLINRLLD  330 (464)
T ss_pred             ccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-CCeehHHHHHHHHHHHh
Confidence                23456778888888887755222111111 1  2788899999988 77788888888888873

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=96.52  E-value=0.16  Score=48.16  Aligned_cols=145  Identities=14%  Similarity=0.222  Sum_probs=104.9

Q ss_pred             CcHHHHHh-cCCHHHHHHhhcCCCC--hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-C---CCHHHHHHH
Q 043116           61 SPIEKVIQ-SGVVPRFVEFLMREDY--PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-S---PSDDVREQA  133 (482)
Q Consensus        61 ~~~~~~~~-~g~~~~L~~ll~~~~~--~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~---~~~~~~~~a  133 (482)
                      ...+-+++ ..+...|...+++...  +.+-..|+.++..+....|..-..+.+.|+++.+++.+. .   ++.++....
T Consensus        96 ~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~l  175 (379)
T PF06025_consen   96 DRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSL  175 (379)
T ss_pred             cccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHH
Confidence            33455556 5566777777776642  688999999999999999999999999999999999887 3   467777777


Q ss_pred             HHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhh------hHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh
Q 043116          134 VWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKL------SMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI  206 (482)
Q Consensus       134 ~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~------~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll  206 (482)
                      -.+|+.+|-+.. ..+.+.+.+.++.++.++.+....      +.....-..+-.|.++.|.........++..+-++.
T Consensus       176 P~~l~AicLN~~-Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~~ii~~l~~l~  253 (379)
T PF06025_consen  176 PNVLSAICLNNR-GLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIIDAIIKILDRLV  253 (379)
T ss_pred             HHHHhHHhcCHH-HHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHH
Confidence            889999996654 457777889999999988433211      344445566777888877666665555555544443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=1.1  Score=45.01  Aligned_cols=297  Identities=16%  Similarity=0.121  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C---CChHHHHHHHHHHHHHhC--CChHhHHHHHhCCCh
Q 043116           45 LEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----E---DYPQLQFEAARALTNIAS--GTSENTKVAIDHGAV  115 (482)
Q Consensus        45 ~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----~---~~~~v~~~a~~~L~~l~~--~~~~~~~~~~~~g~i  115 (482)
                      ..|+..+....+..+.     -.-.|+++.+...+..    +   +++.-.+.|++.++++..  .-+.....+++.-++
T Consensus       388 laal~fl~~~~sKrke-----~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv  462 (970)
T COG5656         388 LAALFFLIISKSKRKE-----ETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIV  462 (970)
T ss_pred             HHHHHHHHHHhcccch-----hhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHH
Confidence            3455555555544311     2235788888888831    1   224455677888888765  333334445555567


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh--
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN--  193 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~--  193 (482)
                      +.++..++++..-++..|+..++.+..+-   ++...-..+.+...+.+ .+.+-+++..|+.++..+..+. .....  
T Consensus       463 ~hv~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl-~nn~lpv~ieAalAlq~fi~~~-q~h~k~s  537 (970)
T COG5656         463 NHVIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCL-KNNHLPVMIEAALALQFFIFNE-QSHEKFS  537 (970)
T ss_pred             HHhhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHH-hcCCcchhhhHHHHHHHHHhch-hhhHHHH
Confidence            77778888888889999999999995332   22222333556667777 4467788888999998888775 22222  


Q ss_pred             -hhhhHHHHHHHHhccCChhHHHHHHHHHH-HhccCC----cHHHHHHHHhCcHHHHHHhhCCCC------hhhHHHHHH
Q 043116          194 -QIRPALRVLAQLIRSNDEKVLTDACRALA-YLADGT----NDKIQAVIEAGVCPRLVKLLGHRS------RLVLTAALR  261 (482)
Q Consensus       194 -~~~~~~~~L~~ll~~~~~~~~~~~l~~L~-~l~~~~----~~~~~~~~~~~~l~~L~~ll~~~~------~~v~~~a~~  261 (482)
                       ...+.++.++.+-+.-+.++...+...+. ..++.-    ++....+.+ .++.....++..++      ++-+..|.+
T Consensus       538 ahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~-qFlkiaq~l~ens~d~~s~vDDKqmaasG  616 (970)
T COG5656         538 AHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVR-QFLKIAQSLLENSSDTSSVVDDKQMAASG  616 (970)
T ss_pred             hhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHH-HHHHHHHHHHcCCccccccccHHHHHHHH
Confidence             22445555555555556666666555443 222221    111111111 22333333343221      123444555


Q ss_pred             HHhHhhc---C---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043116          262 TIGNIVT---G---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD  335 (482)
Q Consensus       262 ~L~~l~~---~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  335 (482)
                      +|..+..   .   .+...+. .+....|.+--++.+. -.++-.+|+..+-++.....+ +..+ .-|+++.+.+++.+
T Consensus       617 iL~T~~smiLSlen~p~vLk~-le~slypvi~Filkn~-i~dfy~Ea~dildg~tf~ske-I~pi-mwgi~Ell~~~l~~  692 (970)
T COG5656         617 ILRTIESMILSLENRPLVLKY-LEVSLYPVISFILKNE-ISDFYQEALDILDGYTFMSKE-IEPI-MWGIFELLLNLLID  692 (970)
T ss_pred             HHHHHHHHHHhcccchHHHHH-HHHHHHHHHHHHHhhh-HHHHHHHHHHHHhhhhHHHHH-hhhh-hhHHHHHHHhcccc
Confidence            5554432   1   2222222 2335666666666766 777888888888777653222 1111 12455555555555


Q ss_pred             CCh-hHHHHHHHHHHHhhcCCC
Q 043116          336 AEF-GTKKEAAWVISNATSGGT  356 (482)
Q Consensus       336 ~~~-~~~~~a~~aL~~l~~~~~  356 (482)
                      ... .....+.-++.|+...|.
T Consensus       693 ~~t~~y~ee~~~al~nfityG~  714 (970)
T COG5656         693 EITAVYSEEVADALDNFITYGK  714 (970)
T ss_pred             cchhhhHHHHHHHHHHHHHhCc
Confidence            543 667788899999987663

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.48  E-value=1  Score=44.47  Aligned_cols=287  Identities=13%  Similarity=0.085  Sum_probs=157.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHh
Q 043116           42 KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKL  121 (482)
Q Consensus        42 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  121 (482)
                      ..+..|+..|+......+...+..+.     ...-.++..+..++.|..+...|..+......... ....-....   +
T Consensus         5 ~~R~~a~~~l~~~i~~~~~~~i~~iW-----~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~-~~R~~fF~~---I   75 (464)
T PF11864_consen    5 SERIKAAEELCESIQKYPLSSIEEIW-----YAAKDLIDPNQPSEARRAALELLIACIKRQDSSSG-LMRAEFFRD---I   75 (464)
T ss_pred             HHHHHHHHHHHHHHHhCCchHHHHHH-----HHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccH-HHHHHHHHH---H
Confidence            45667777777777665332233222     22345665555467899999998888874433111 111011111   1


Q ss_pred             hCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh--------------------------hhhHHHH
Q 043116          122 LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA--------------------------KLSMLRT  175 (482)
Q Consensus       122 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--------------------------~~~~~~~  175 (482)
                      -....++-...-+.+|..|+.+....  ...+.+..+.+..-+...-                          +......
T Consensus        76 ~~~~~~~d~~~~l~aL~~LT~~Grdi--~~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~  153 (464)
T PF11864_consen   76 SDPSNDDDFDLRLEALIALTDNGRDI--DFFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSD  153 (464)
T ss_pred             hcCCCchhHHHHHHHHHHHHcCCcCc--hhcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHH
Confidence            22333433445566666676544333  1234556666655552111                          2233445


Q ss_pred             HHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccC---CcHHHHHHHHhCcHHHHHHhhCC
Q 043116          176 ATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADG---TNDKIQAVIEAGVCPRLVKLLGH  250 (482)
Q Consensus       176 a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~---~~~~~~~~~~~~~l~~L~~ll~~  250 (482)
                      ....+.++.... .........+++..++.+.. +.++.....++..+-.+...   +++...     .++..|..... 
T Consensus       154 ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-----~~i~vLCsi~~-  227 (464)
T PF11864_consen  154 LLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-----PCIEVLCSIVN-  227 (464)
T ss_pred             HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-----HHHHHHhhHhc-
Confidence            566666666655 33444555666776666643 33444455666555554432   111111     22334444422 


Q ss_pred             CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-----CchhHHHHHHHHHHHHhcCCHHHHHHHHH-cC
Q 043116          251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-----HNKSIKKEVCWIISNITAGNREQIQAVID-AG  324 (482)
Q Consensus       251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~  324 (482)
                       ..+....+-.++.||+...-.+       ..+..|..+|.++     ++..+.+.|...+..+..+..+....-+. .-
T Consensus       228 -~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~  299 (464)
T PF11864_consen  228 -SVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSP  299 (464)
T ss_pred             -ccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccH
Confidence             2367777888999998744332       2355677777321     14566678888888888754222222222 22


Q ss_pred             --ChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          325 --LIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       325 --~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                        +++.+...++..++.+-..++..+.++..
T Consensus       300 ~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~  330 (464)
T PF11864_consen  300 SSVLPSLLNALKSNSPRVDYEILLLINRLLD  330 (464)
T ss_pred             HHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence              78888888888888888888888888873

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.37  E-value=0.14  Score=45.06  Aligned_cols=107  Identities=23%  Similarity=0.243  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHH
Q 043116          340 TKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVE  418 (482)
Q Consensus       340 ~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~  418 (482)
                      ....|+..|.-++-- .|.....+-+...++.|+++++ ...+.+...++.+|..++-..+..            .+.|+
T Consensus       107 li~~aL~vLQGl~LL-Hp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N------------~r~FE  173 (257)
T PF08045_consen  107 LIALALRVLQGLCLL-HPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPEN------------QRDFE  173 (257)
T ss_pred             HHHHHHHHHHHHHHc-CchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHH------------HHHHH
Confidence            344566677766664 4555666678899999999995 456789999999999998765553            77899


Q ss_pred             HhchHHHHHHhhcC--CCHHHHHHHHHHHHHhcCCCCCCCCCC
Q 043116          419 EAEGLEKIENLQSH--DNNDIHEMSVKILETYWCGRVVGPQPG  459 (482)
Q Consensus       419 ~~~~~~~l~~l~~~--~~~~v~~~a~~~l~~~~~~~~~~~~~~  459 (482)
                      +.+|++.+..+..+  -+.+++-+....+-.|+.+|.....++
T Consensus       174 ~~~Gl~~v~~llk~~~~~~~~r~K~~EFL~fyl~~E~~~~~~~  216 (257)
T PF08045_consen  174 ELNGLSTVCSLLKSKSTDRELRLKCIEFLYFYLMPETPSIPPG  216 (257)
T ss_pred             HhCCHHHHHHHHccccccHHHhHHHHHHHHHHHcccCCCCCcc
Confidence            99999999999765  468888999999988888887765543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.34  E-value=0.037  Score=57.74  Aligned_cols=142  Identities=13%  Similarity=0.154  Sum_probs=110.2

Q ss_pred             cHHHHHHhhCC----CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 043116          240 VCPRLVKLLGH----RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE  315 (482)
Q Consensus       240 ~l~~L~~ll~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  315 (482)
                      +.|.++...+.    .+|.++..|.-+|+.++.-+...+.     .-++.++.++...+++.+|..++-+++.++..-|.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            44455555533    5688999999999999886665544     45788999999665999999999999999875555


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       316 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      .+.     ..-+.|...+.++++.+|+.|..+|.++..++      .+.-.|.+..+.-++.+++.+++..|-..+.-+.
T Consensus       995 lie-----~~T~~Ly~rL~D~~~~vRkta~lvlshLILnd------miKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 LIE-----PWTEHLYRRLRDESPSVRKTALLVLSHLILND------MIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ccc-----hhhHHHHHHhcCccHHHHHHHHHHHHHHHHhh------hhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            332     35567888899999999999999999998742      3345789999999999999999988876555555


Q ss_pred             Hh
Q 043116          396 KV  397 (482)
Q Consensus       396 ~~  397 (482)
                      ..
T Consensus      1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred             hc
Confidence            43

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=96.33  E-value=2.2  Score=48.67  Aligned_cols=264  Identities=12%  Similarity=0.045  Sum_probs=143.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCC--CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCCh
Q 043116           38 SDDNKVQLEATTLFRKMLSFDR--NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAV  115 (482)
Q Consensus        38 s~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i  115 (482)
                      +.+..+...|+..|+.++..--  .+....-.+..++.+|...+.+....++++..++|+.++......    -+..| -
T Consensus      1148 ~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~----nIkSG-W 1222 (1780)
T PLN03076       1148 SENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVN----NVKSG-W 1222 (1780)
T ss_pred             CcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHh----hhhcC-c
Confidence            4467788889998888876431  111122335567888888787665589999999999998763222    23333 3


Q ss_pred             HHHHHh----hCCCCHHHHHHHHHHHHHhhCCChh-h----HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc-
Q 043116          116 PIFVKL----LASPSDDVREQAVWALGNVAGDSSR-C----RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR-  185 (482)
Q Consensus       116 ~~L~~l----l~~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~-  185 (482)
                      +.+..+    ..+.++.+...|..++..++.+.-. .    ...+.  ..+..+.....+..+.++--.|+..|++++. 
T Consensus      1223 ktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~--DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~ 1300 (1780)
T PLN03076       1223 KSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT--DCVNCLIAFTNSRFNKDISLNAIAFLRFCATK 1300 (1780)
T ss_pred             HHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH--HHHHHHHHHHhCcCcccccHHHHHHHHHHHHH
Confidence            444443    3456788888888888877633111 0    11121  1344454444333334444444444543311 


Q ss_pred             ---CC-----C------------------CC-----Ch----hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC---
Q 043116          186 ---GK-----P------------------QP-----PF----NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG---  227 (482)
Q Consensus       186 ---~~-----~------------------~~-----~~----~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~---  227 (482)
                         ..     .                  ..     ..    ...-.++..+..+..+++++||..|+..|..+...   
T Consensus      1301 La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~ 1380 (1780)
T PLN03076       1301 LAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGH 1380 (1780)
T ss_pred             HHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhc
Confidence               10     0                  00     00    11123334444556678899999999999877632   


Q ss_pred             --CcHHHHHHHHhCcHHHHHHhhCCC------------------C-h-------hhHHHHHHHHhHhhcCChhhHHHHHh
Q 043116          228 --TNDKIQAVIEAGVCPRLVKLLGHR------------------S-R-------LVLTAALRTIGNIVTGDDFQTQCIIN  279 (482)
Q Consensus       228 --~~~~~~~~~~~~~l~~L~~ll~~~------------------~-~-------~v~~~a~~~L~~l~~~~~~~~~~l~~  279 (482)
                        +++....++. +++-.+...++..                  + .       +....|++.+.++....-+....++ 
T Consensus      1381 ~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L- 1458 (1780)
T PLN03076       1381 LFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVNPLL- 1458 (1780)
T ss_pred             cCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence              2334444444 3344444333210                  0 0       1222334444444332222222222 


Q ss_pred             cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          280 CGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       280 ~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      .+++..|...+..+ +..+.+.++.+|.++..
T Consensus      1459 ~~~l~ll~~ci~q~-n~~la~ig~~~l~~li~ 1489 (1780)
T PLN03076       1459 KKVLMLLVSFIKRP-HQSLAGIGIAAFVRLMS 1489 (1780)
T ss_pred             HHHHHHHHHHHcCc-hHHHHHHHHHHHHHHHH
Confidence            25666666666767 78888888888888875

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.33  E-value=0.077  Score=56.96  Aligned_cols=162  Identities=16%  Similarity=0.157  Sum_probs=109.5

Q ss_pred             HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh
Q 043116          175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL  254 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~  254 (482)
                      .+.|+...+....+.  ...+.+.+..++..+..+...+|..|++||..+.+.++..   +....+-..+..-+.+....
T Consensus       796 ~a~li~~~la~~r~f--~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~v---L~~~dvq~~Vh~R~~Dssas  870 (1692)
T KOG1020|consen  796 DAKLIVFYLAHARSF--SQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSV---LSRPDVQEAVHGRLNDSSAS  870 (1692)
T ss_pred             hHHHHHHHHHhhhHH--HHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHh---hcCHHHHHHHHHhhccchhH
Confidence            455555555544321  1223677888888889889999999999999999877642   22333444555666778889


Q ss_pred             hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh
Q 043116          255 VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       255 v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      ||..|+..+|......++....     ....+..-+.+. ...||+.+..++..+|...|+. ..     +.....+++.
T Consensus       871 VREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf-~~-----i~~~cakmlr  938 (1692)
T KOG1020|consen  871 VREAALDLVGRFVLSIPELIFQ-----YYDQIIERILDT-GVSVRKRVIKILRDICEETPDF-SK-----IVDMCAKMLR  938 (1692)
T ss_pred             HHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCCh-hh-----HHHHHHHHHH
Confidence            9999999999888877766553     455678778777 8889999999999999855542 11     1222223332


Q ss_pred             ---cCChhHHHHHHHHHHHhhc
Q 043116          335 ---DAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       335 ---~~~~~~~~~a~~aL~~l~~  353 (482)
                         ++...+++-+..++.++-.
T Consensus       939 Rv~DEEg~I~kLv~etf~klWF  960 (1692)
T KOG1020|consen  939 RVNDEEGNIKKLVRETFLKLWF  960 (1692)
T ss_pred             HhccchhHHHHHHHHHHHHHhc
Confidence               3333366666666666643

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=96.30  E-value=0.022  Score=46.66  Aligned_cols=147  Identities=20%  Similarity=0.169  Sum_probs=98.4

Q ss_pred             hHHHHHHHcc-hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116          157 LIPLLAELNE-HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV  235 (482)
Q Consensus       157 i~~l~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~  235 (482)
                      +..++..+.. ...++++..+.-++..+...   ........+-+.+-..+...+.+-...+..++..+-...++....+
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~---~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKLLDA---AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            4455555533 45667777777777777311   1111223344455556666666677788888888887777665555


Q ss_pred             H-HhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh-HHHHHHHHHHH
Q 043116          236 I-EAGVCPRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS-IKKEVCWIISN  308 (482)
Q Consensus       236 ~-~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~-v~~~a~~~L~n  308 (482)
                      + ..|+++.++.++.  ..+..++..++.+|..=+  .++..+..+...++++|-+.++.+++.. +|..|+-+|+-
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc--~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAAC--IDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHT--TSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHH--ccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            5 4589999999998  778889999999887644  3444455666679999999997664666 88888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=96.27  E-value=1  Score=42.19  Aligned_cols=157  Identities=15%  Similarity=0.119  Sum_probs=115.0

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhc-CChhhHHHHHhc-Cc-hHHHHHHhcCCC----c--------hhHHHHHHHH
Q 043116          241 CPRLVKLLGHRSRLVLTAALRTIGNIVT-GDDFQTQCIINC-GA-LRYLLGLLIHNH----N--------KSIKKEVCWI  305 (482)
Q Consensus       241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~-~~-i~~L~~ll~~~~----~--------~~v~~~a~~~  305 (482)
                      +..+.+.|+...+.+...+++.|..++. ......+.+.+. ++ .+.+-+++....    +        +.+|......
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            6788889998888899999999999998 555666666654 22 234445543210    1        2788887766


Q ss_pred             HHHHhc-CCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC---CHHHHHHHHHcCChHHHHhcCCCCC
Q 043116          306 ISNITA-GNREQIQAVID-AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG---THEQIKHLVREGCVKPLCDLLPCPD  380 (482)
Q Consensus       306 L~nl~~-~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~---~~~~~~~l~~~~~l~~L~~ll~~~~  380 (482)
                      +..+.. +++.....+++ .+.+..+.+-+..+++++....+.++..-+...   .+.....+.....+..|..+....+
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            666665 67777777774 667888888888888999999999998643322   2444556667778999999888877


Q ss_pred             H----HHHHHHHHHHHHHHHh
Q 043116          381 P----QIVTVCLIGLENILKV  397 (482)
Q Consensus       381 ~----~v~~~~l~~L~~l~~~  397 (482)
                      +    .+...+-..|..++..
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~  238 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTD  238 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcC
Confidence            7    8888888888888864

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=1.6  Score=43.93  Aligned_cols=315  Identities=17%  Similarity=0.118  Sum_probs=167.3

Q ss_pred             hhccHHHHHHHhc-C-------CCHHHHHHHHHHHHHHhc--CCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHH
Q 043116           25 KFEILPTMVAGVW-S-------DDNKVQLEATTLFRKMLS--FDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARA   94 (482)
Q Consensus        25 ~~~~i~~l~~~l~-s-------~~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~   94 (482)
                      -.|.++.+...++ +       +++.....|++.+.++.+  .. .....-+.+.-+++.++..++++. --++..|+..
T Consensus       406 fqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk-~sp~an~me~fiv~hv~P~f~s~y-gfL~Srace~  483 (970)
T COG5656         406 FQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITK-MSPAANVMEYFIVNHVIPAFRSNY-GFLKSRACEF  483 (970)
T ss_pred             hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhcc-CchHHHHHHHHHHHHhhHhhcCcc-cchHHHHHHH
Confidence            4567788888883 1       123444567777777766  33 333455555556777777778877 6889999999


Q ss_pred             HHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh--CChHHHHHHHcchhhhhH
Q 043116           95 LTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ--GALIPLLAELNEHAKLSM  172 (482)
Q Consensus        95 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~~~~~~  172 (482)
                      +..+..   +.++.-+-....+....++++.+-.++..|+-++.-+..+.. ....+.+.  +.++.++.+- +.-+.+.
T Consensus       484 is~~ee---Dfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q-~h~k~sahVp~tmekLLsLS-n~feiD~  558 (970)
T COG5656         484 ISTIEE---DFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQ-SHEKFSAHVPETMEKLLSLS-NTFEIDP  558 (970)
T ss_pred             HHHHHH---hcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchh-hhHHHHhhhhHHHHHHHHhc-ccccchH
Confidence            999954   333333333445666777877777888888888888875542 22333221  1223333332 3334444


Q ss_pred             HHHHHHHHHHhhcCC-CCCChhhhhhHHHHH----HHHhccC-C-----hhHHHHHHHHHHHhcc------CCcHHHHHH
Q 043116          173 LRTATWTLSNFCRGK-PQPPFNQIRPALRVL----AQLIRSN-D-----EKVLTDACRALAYLAD------GTNDKIQAV  235 (482)
Q Consensus       173 ~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L----~~ll~~~-~-----~~~~~~~l~~L~~l~~------~~~~~~~~~  235 (482)
                      ...+...+..-..+. ..-.......++...    ..++.++ +     ++-+..|.+.|..+.+      +.+...+ -
T Consensus       559 LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk-~  637 (970)
T COG5656         559 LSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLK-Y  637 (970)
T ss_pred             HHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHH-H
Confidence            544444433322221 111112222333322    2233222 1     2334445554443331      1222211 1


Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH
Q 043116          236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNR  314 (482)
Q Consensus       236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~  314 (482)
                      ......|.+--.+.+.-.++-.+|+.++-+......+...  +--|+.+.+.+++.+......-.+++-++.|+.. |..
T Consensus       638 le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~p--imwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~  715 (970)
T COG5656         638 LEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEP--IMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKT  715 (970)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhh--hhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCcc
Confidence            2224455555566666677778888887766543333221  1236777777777777323667788899999986 322


Q ss_pred             HHHHHHHHcCC-----hHHHHHHHhcCCh--hHHHHHHHHHHHhhc
Q 043116          315 EQIQAVIDAGL-----IGPIVNLLQDAEF--GTKKEAAWVISNATS  353 (482)
Q Consensus       315 ~~~~~l~~~~~-----i~~L~~ll~~~~~--~~~~~a~~aL~~l~~  353 (482)
                      +    +.+.|.     +......+.+++.  +-...++..+..++.
T Consensus       716 e----f~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~L  757 (970)
T COG5656         716 E----FMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLIL  757 (970)
T ss_pred             c----cccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHH
Confidence            2    223332     2223333334433  344556666655543

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.19  E-value=0.59  Score=44.33  Aligned_cols=275  Identities=16%  Similarity=0.124  Sum_probs=139.8

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHH-HHHHHHhhCCChhhHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQA-VWALGNVAGDSSRCRD  149 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a-~~~L~~l~~~~~~~~~  149 (482)
                      +..++.=+.+.....+|..++--|+.-+. +++++..+..+|..+.+.+.+.+ ++..+...+ +.++.-++.+.. ...
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~  100 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMH  100 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chh
Confidence            55566666644446889999988988887 89999999999999999999854 333243333 444444444433 233


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc---------cCChhHHHHHHHH
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR---------SNDEKVLTDACRA  220 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~---------~~~~~~~~~~l~~  220 (482)
                      .+.+.+....++.++.-.....+.....       ......-..........+...+.         ......+..++.+
T Consensus       101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~  173 (361)
T PF07814_consen  101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLA  173 (361)
T ss_pred             hhhchhHHHHHHHHhccccccccccchh-------hhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHH
Confidence            3344445555566663000000000000       00000000001112221222221         1122334444444


Q ss_pred             HHHhc--------------cCCcHHHHHHHHhCcHHHHHHhhC----CC-------C-----hhhHHHHHHHHhHhhcCC
Q 043116          221 LAYLA--------------DGTNDKIQAVIEAGVCPRLVKLLG----HR-------S-----RLVLTAALRTIGNIVTGD  270 (482)
Q Consensus       221 L~~l~--------------~~~~~~~~~~~~~~~l~~L~~ll~----~~-------~-----~~v~~~a~~~L~~l~~~~  270 (482)
                      +-.++              ...+...+.+...|++..++..+.    ..       .     ......++++|-+.+..+
T Consensus       174 le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~  253 (361)
T PF07814_consen  174 LESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLS  253 (361)
T ss_pred             HHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcC
Confidence            44442              011112233555677888888774    11       1     124556788888887766


Q ss_pred             hhhHHHHHhc--CchHHHH-HHhcCCC--chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----------
Q 043116          271 DFQTQCIINC--GALRYLL-GLLIHNH--NKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-----------  334 (482)
Q Consensus       271 ~~~~~~l~~~--~~i~~L~-~ll~~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----------  334 (482)
                      ......+...  +.++.+. .++....  .......++..+.|+..++++....+...++...+..+..           
T Consensus       254 ~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i~~~~~~~~~~~~~  333 (361)
T PF07814_consen  254 EENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLIVTSFFCVLSLPNY  333 (361)
T ss_pred             ccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHHHHhhccccccccc
Confidence            6555544433  2332222 2222220  3344567888999998877777666665444333222211           


Q ss_pred             ---cCChhHHHHHHHHHHHhhcCC
Q 043116          335 ---DAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       335 ---~~~~~~~~~a~~aL~~l~~~~  355 (482)
                         +...+...-++.++.|++.+.
T Consensus       334 ~~~~~~~D~~IL~Lg~LINL~E~s  357 (361)
T PF07814_consen  334 VPEESSFDILILALGLLINLVEHS  357 (361)
T ss_pred             ccccccchHHHHHHHhHHHheeeC
Confidence               122345666777777777653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=96.13  E-value=0.96  Score=40.62  Aligned_cols=203  Identities=12%  Similarity=0.072  Sum_probs=142.7

Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChh---hh---hhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFN---QI---RPALRVLAQLIRSNDEKVLTDACRALA  222 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~---~~---~~~~~~L~~ll~~~~~~~~~~~l~~L~  222 (482)
                      ..+.+.|.+..++..+ ...+-+.+..++.+..++-+........   ..   ..++..++.--.. .+++...+-..+.
T Consensus        73 qef~~~~~l~~lI~~l-~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~~~~-~~~iaL~cg~mlr  150 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHL-PKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKGYEN-TPEIALTCGNMLR  150 (342)
T ss_pred             HHHHhCCchHHHHHhh-hcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhhhcc-chHHHHHHHHHHH
Confidence            4456778888999998 6677788888999999998876322221   11   2344444444111 3556555555555


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc----hHHHHHHhcCCCchhH
Q 043116          223 YLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA----LRYLLGLLIHNHNKSI  298 (482)
Q Consensus       223 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~----i~~L~~ll~~~~~~~v  298 (482)
                      ....+ +...+.+..+.-+......+..+.-++...|..+...+.......+..++..+.    .+..-.+++++ +.-+
T Consensus       151 Ecirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~-Nyvt  228 (342)
T KOG1566|consen  151 ECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE-NYVT  228 (342)
T ss_pred             HHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc-ceeh
Confidence            55543 345566777777788888888888889999999999888766655555554432    33466677777 9999


Q ss_pred             HHHHHHHHHHHhcC--CHHHH-HHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          299 KKEVCWIISNITAG--NREQI-QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       299 ~~~a~~~L~nl~~~--~~~~~-~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      +..+...++.+..+  +.... +++-+..-+..++.+|+++...+|.+|.....-+..+.
T Consensus       229 krqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  229 KRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCC
Confidence            99999999999863  33333 33444567899999999999999999999988887754

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=96.06  E-value=0.01  Score=33.30  Aligned_cols=29  Identities=34%  Similarity=0.426  Sum_probs=25.6

Q ss_pred             cHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          240 VCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       240 ~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      +++.+++++++++++||..|+.+|+.++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            36889999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=96.05  E-value=2.3  Score=44.26  Aligned_cols=91  Identities=11%  Similarity=0.166  Sum_probs=67.9

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh
Q 043116          296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCD  374 (482)
Q Consensus       296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~  374 (482)
                      +.++..+.-+++++|.......+     ..+|.|++-|. +....+|.+.+.+++.++..-+     . .-...++.+..
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT-----a-m~d~YiP~I~~ 1013 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYT-----A-MTDRYIPMIAA 1013 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHH-----H-HHHHhhHHHHH
Confidence            45677788889999875444222     36788888777 4567788888888888876311     1 22347999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHHh
Q 043116          375 LLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       375 ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      -|.++++-|+.+++..|.+++..
T Consensus      1014 ~L~Dp~~iVRrqt~ilL~rLLq~ 1036 (1529)
T KOG0413|consen 1014 SLCDPSVIVRRQTIILLARLLQF 1036 (1529)
T ss_pred             HhcCchHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999864

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.00  E-value=2.8  Score=46.00  Aligned_cols=72  Identities=10%  Similarity=0.125  Sum_probs=54.8

Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      +++|.|-.-|.+. +..+|..|...++.+......... --....+...+.-+.+.++++|..++....++..+
T Consensus       259 ~vip~l~~eL~se-~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~  330 (1266)
T KOG1525|consen  259 AVIPQLEFELLSE-QEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLN  330 (1266)
T ss_pred             HHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhc
Confidence            7899999999998 999999999999999864333221 00123556666666788999999999999888775

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.97  E-value=0.22  Score=43.90  Aligned_cols=102  Identities=14%  Similarity=0.062  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH
Q 043116           86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL  164 (482)
Q Consensus        86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  164 (482)
                      .....|+++|..++--+|..+..+.....+..+++++. ...+.++..++.+|..+..+++.....+-+.+++..++.++
T Consensus       106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            34566789999999889999999999999999999995 46789999999999999989888888999999999999999


Q ss_pred             cch-hhhhHHHHHHHHHHHhhcCC
Q 043116          165 NEH-AKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       165 ~~~-~~~~~~~~a~~~L~~L~~~~  187 (482)
                      +.. .+.+++-.++.+|.-.....
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~E  209 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMPE  209 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHccc
Confidence            643 45677777777766555443

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.92  E-value=0.16  Score=50.17  Aligned_cols=181  Identities=13%  Similarity=0.119  Sum_probs=123.2

Q ss_pred             hHHHHHHHHhcc----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCCh
Q 043116          197 PALRVLAQLIRS----NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDD  271 (482)
Q Consensus       197 ~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~  271 (482)
                      .+-|.+.+...+    +|++++..|--+|..+..-+.+...     .-+|.++..|. +++|.+|.+|.-.++.++.+..
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN  966 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN  966 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence            344555555544    6788998888888877654443322     34678888885 8999999999999998876544


Q ss_pred             hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          272 FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       272 ~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                      .....     .-..|..-|.+. +..||+.+..++.++.....-     --.|-.+.+...+.++|.++...|-..+..+
T Consensus       967 ~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilagq~-----KVKGqlg~ma~~L~deda~Isdmar~fft~~ 1035 (1128)
T COG5098         967 TTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAGQL-----KVKGQLGKMALLLTDEDAEISDMARHFFTQI 1035 (1128)
T ss_pred             hhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHccce-----eeccchhhhHhhccCCcchHHHHHHHHHHHH
Confidence            33332     234677778777 999999999999999863211     1247788999999999999999999999999


Q ss_pred             hcCCCHHHHHHHHHcCChHHHHhcCCC---CCHHHHHHHHHHHHHHHHhchh
Q 043116          352 TSGGTHEQIKHLVREGCVKPLCDLLPC---PDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       352 ~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +...+.      .-+|+++.+..+-.+   ++.+ .+...+.|..++...+.
T Consensus      1036 a~KdNt------~yn~fidifs~ls~~ae~g~e~-fk~II~FLt~fI~kerh 1080 (1128)
T COG5098        1036 AKKDNT------MYNGFIDIFSTLSSDAENGQEP-FKLIIGFLTDFISKERH 1080 (1128)
T ss_pred             Hhcccc------hhhhhHHHHHHcCchhhcCCCc-HHHHHHHHHHHHHHHHH
Confidence            875432      123555555444422   2222 44556667777655433

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.91  E-value=0.083  Score=36.45  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcC
Q 043116          299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREG  367 (482)
Q Consensus       299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~  367 (482)
                      .+.+.|+++++++. +.....+.+.++++.++++.. ++...+|-.|..+|+-++.  +.+....+.+.|
T Consensus         4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~--T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS--TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC--CHHHHHHHHHcC
Confidence            57899999999874 555666777899999999988 5678899999999999887  677777766655

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.90  E-value=0.82  Score=45.68  Aligned_cols=103  Identities=15%  Similarity=0.161  Sum_probs=75.5

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHH
Q 043116          239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQI  317 (482)
Q Consensus       239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~  317 (482)
                      +++..+++...+++..||..+|.+|..++......-..+. .++...+..-+.+. .+.||.+|+.+|+.+-.. ..+  
T Consensus        85 ~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   85 GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCC--
Confidence            5677777778888999999999999999874443333233 36777788888888 889999999999999642 111  


Q ss_pred             HHHHHcCChHHHHHHHh-cCChhHHHHHHHHHH
Q 043116          318 QAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVIS  349 (482)
Q Consensus       318 ~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~  349 (482)
                          +..+...+..+++ +++++||..|+..+.
T Consensus       161 ----e~~v~n~l~~liqnDpS~EVRRaaLsnI~  189 (892)
T KOG2025|consen  161 ----ECPVVNLLKDLIQNDPSDEVRRAALSNIS  189 (892)
T ss_pred             ----cccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence                1246667777777 578999987765543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=95.89  E-value=0.2  Score=51.88  Aligned_cols=195  Identities=11%  Similarity=0.050  Sum_probs=134.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhh
Q 043116          118 FVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP  197 (482)
Q Consensus       118 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  197 (482)
                      +..-+.+.+..-|..|+..+..+..... ........+.+..++.....+.+..+...++.+|..++..-.........+
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~  336 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKN  336 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHh
Confidence            3334445667777788888887774443 111111224455666666677788888889999999998765455556678


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHH
Q 043116          198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQC  276 (482)
Q Consensus       198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~  276 (482)
                      ++|.++..+....+.++..+..++-.++....       -...++.+...+++.++.++..+...+.......+ .....
T Consensus       337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~  409 (815)
T KOG1820|consen  337 VFPSLLDRLKEKKSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEK  409 (815)
T ss_pred             hcchHHHHhhhccHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcch
Confidence            89999999998888888888777776664221       11346788899999999999998888777766443 21111


Q ss_pred             HHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHH
Q 043116          277 IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVI  321 (482)
Q Consensus       277 l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~  321 (482)
                      -.-.+.++.++....+. +.+||..|..+++-+.. ...+.+..++
T Consensus       410 ~t~~~l~p~~~~~~~D~-~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L  454 (815)
T KOG1820|consen  410 ETVKTLVPHLIKHINDT-DKDVRKAALEAVAAVMKVHGEEVFKKLL  454 (815)
T ss_pred             hhHHHHhHHHhhhccCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            12236788899999888 99999999999988876 3344343333

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=95.88  E-value=0.13  Score=42.23  Aligned_cols=146  Identities=12%  Similarity=0.073  Sum_probs=88.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      +++.|+++++.+.+..+|.+++++|+.+..-+|...+.+....  +.-  .-...+......... ..+.....    +.
T Consensus        11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~-~~~~~~~~----ee   81 (160)
T PF11865_consen   11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLP-MMGISPSS----EE   81 (160)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHh-hccCCCch----HH
Confidence            6788899998886689999999999999886666554332211  100  001111111111111 11111111    12


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      ..-..++..|++.+.+..-..-...++.++.++..............++|.++..+++.++..++..+.-|+.+.
T Consensus        82 ~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            222335778888885554444455677777777755444456677899999999999777788877777766654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.85  E-value=2.5  Score=44.19  Aligned_cols=241  Identities=17%  Similarity=0.204  Sum_probs=144.0

Q ss_pred             hhHHHHHHHHhcc-----CChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh----CCCC----hhhHHHHHHH
Q 043116          196 RPALRVLAQLIRS-----NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL----GHRS----RLVLTAALRT  262 (482)
Q Consensus       196 ~~~~~~L~~ll~~-----~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll----~~~~----~~v~~~a~~~  262 (482)
                      .+++..++.++.+     ...+....++..|...+.. ....+.+++.+.++.|+..+    ..+.    +.+.+..+.+
T Consensus       116 ~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I  194 (802)
T PF13764_consen  116 CGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI  194 (802)
T ss_pred             CCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence            3566666666653     2345666667777766654 55677788899999888876    3434    5677777777


Q ss_pred             HhHhhcCChhh-HH---HHH--------hcCchHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116          263 IGNIVTGDDFQ-TQ---CII--------NCGALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQIQAVIDAGLIG  327 (482)
Q Consensus       263 L~~l~~~~~~~-~~---~l~--------~~~~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  327 (482)
                      +-.+....... ..   ...        ...-+..+++.+.++.   ++.+....+.+|.+++.++++.++.+++  .+.
T Consensus       195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--~F~  272 (802)
T PF13764_consen  195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--HFK  272 (802)
T ss_pred             HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--HHH
Confidence            76665422111 00   000        1123666677666542   5788899999999999999998888776  333


Q ss_pred             HHHHHHhc--C-ChhHHHHHHHHHHHhhcCC-----CHHHHHHHHHcCChHHHHhcCCCC--------CHH--------H
Q 043116          328 PIVNLLQD--A-EFGTKKEAAWVISNATSGG-----THEQIKHLVREGCVKPLCDLLPCP--------DPQ--------I  383 (482)
Q Consensus       328 ~L~~ll~~--~-~~~~~~~a~~aL~~l~~~~-----~~~~~~~l~~~~~l~~L~~ll~~~--------~~~--------v  383 (482)
                      ..+++=.-  . .++- ...+.+++.++..-     .......+++.|++...++.+...        +++        -
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            33332221  1 1111 22355555554421     134566778889988777766421        121        2


Q ss_pred             HHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCCCC
Q 043116          384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS-HDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       384 ~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      ...++..|.-+..-...             .+.+...+++..+..|.. +....|-..|..+|+.+-+.+.
T Consensus       352 Lp~iL~lL~GLa~gh~~-------------tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~~  409 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEP-------------TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENED  409 (802)
T ss_pred             HHHHHHHHHHHHhcCHH-------------HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcChh
Confidence            33455666665543222             333345677788888843 4467788899999888777554

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.77  E-value=0.02  Score=32.10  Aligned_cols=29  Identities=28%  Similarity=0.384  Sum_probs=25.8

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116          198 ALRVLAQLIRSNDEKVLTDACRALAYLAD  226 (482)
Q Consensus       198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~  226 (482)
                      ++|.+.++++++++++|..++.+|+.+++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.75  E-value=1.4  Score=45.61  Aligned_cols=194  Identities=18%  Similarity=0.148  Sum_probs=115.8

Q ss_pred             HHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHH--HHHHHhccCCh-h
Q 043116          136 ALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALR--VLAQLIRSNDE-K  212 (482)
Q Consensus       136 ~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~--~L~~ll~~~~~-~  212 (482)
                      ++++++...+.....+.+.++...+...+......++...+...+.+++...+..........+.  .+..++...+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            45577777777777888999999999999777778899999999999998764433333322222  33334444444 6


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh-hhHHHHHhcCchHHHHHHhc
Q 043116          213 VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD-FQTQCIINCGALRYLLGLLI  291 (482)
Q Consensus       213 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~-~~~~~l~~~~~i~~L~~ll~  291 (482)
                      .-..++..|+.+....+....                   ...+..+...+......-+ .........-+.+.+..++.
T Consensus       574 rsY~~~siLa~ll~~~~~~~~-------------------~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~  634 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEKTTE-------------------CVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILR  634 (699)
T ss_pred             HHHHHHHHHHHHHhCCCcCcc-------------------ccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhc
Confidence            666777777766654332111                   1112222222222111111 11111111112222556666


Q ss_pred             CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHH
Q 043116          292 HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVI  348 (482)
Q Consensus       292 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL  348 (482)
                      .+..+....-|.|++.+++...++..+...+.++++.+.+.-.. ....++..+...+
T Consensus       635 ~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  692 (699)
T KOG3665|consen  635 LSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVI  692 (699)
T ss_pred             ccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHh
Confidence            66577788999999999999888877778888888888776542 2344444444443

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.67  E-value=2  Score=41.50  Aligned_cols=254  Identities=13%  Similarity=0.051  Sum_probs=141.8

Q ss_pred             HHHHHHHHhCCChHh-HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh
Q 043116           91 AARALTNIASGTSEN-TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK  169 (482)
Q Consensus        91 a~~~L~~l~~~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  169 (482)
                      +-..|..+....+.. .+..++...+..|+.++.++|+.-|.....+|.++.+.-...|..+.. .+...+.+.+.....
T Consensus       110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~  188 (409)
T PF01603_consen  110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETER  188 (409)
T ss_dssp             HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS-
T ss_pred             HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCccc
Confidence            334555554422111 223444567888999999999999999999999987655555555543 245556666644555


Q ss_pred             hhHHHHHHHHHHHhhcCCC-CCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116          170 LSMLRTATWTLSNFCRGKP-QPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL  247 (482)
Q Consensus       170 ~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  247 (482)
                      ..-...++.++..+..+-. ........-....++.+...+. .........++......++.....+     +..+++.
T Consensus       189 ~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~-----i~~llk~  263 (409)
T PF01603_consen  189 HNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPV-----IKGLLKH  263 (409)
T ss_dssp             -STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHH-----HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHH-----HHHHHHh
Confidence            5667778888888888753 2233333444556666766554 3445666667766665555443322     2233333


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc---C
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA---G  324 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~---~  324 (482)
                      =-..++.-...-+.-+..+....+...-.-+..-+...+...+.+. +..|...|+....|=     . .-.++..   .
T Consensus       264 WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~-h~qVAErAl~~w~n~-----~-~~~li~~~~~~  336 (409)
T PF01603_consen  264 WPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSP-HFQVAERALYFWNNE-----Y-FLSLISQNSRV  336 (409)
T ss_dssp             S-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSS-SHHHHHHHHGGGGSH-----H-HHHHHHCTHHH
T ss_pred             CCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHCCH-----H-HHHHHHhChHH
Confidence            2223333333345555555553332211122234677788888888 888888877554322     2 2233321   2


Q ss_pred             ChHHHHHHHhc-----CChhHHHHHHHHHHHhhcCCCHH
Q 043116          325 LIGPIVNLLQD-----AEFGTKKEAAWVISNATSGGTHE  358 (482)
Q Consensus       325 ~i~~L~~ll~~-----~~~~~~~~a~~aL~~l~~~~~~~  358 (482)
                      ++|.+...+..     =+..++..+..++.-+... +++
T Consensus       337 i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~-d~~  374 (409)
T PF01603_consen  337 ILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEM-DPK  374 (409)
T ss_dssp             HHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTT-SHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh-CHH
Confidence            56666666542     1567888888888877764 443

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=95.65  E-value=0.89  Score=43.92  Aligned_cols=244  Identities=12%  Similarity=0.089  Sum_probs=133.8

Q ss_pred             HHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC
Q 043116           66 VIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS  144 (482)
Q Consensus        66 ~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~  144 (482)
                      .++..++..|+.++.++| +.-|.....+|.++-......|..+.. .+...+.+++.. ....-...++..++.+..+-
T Consensus       129 ~i~~~fi~~Ll~l~~S~D-~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf  206 (409)
T PF01603_consen  129 YIDQKFIKKLLELFDSPD-PRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETERHNGIAELLEILGSIINGF  206 (409)
T ss_dssp             TS-HHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS--STHHHHHHHHHHHHTT-
T ss_pred             HcCHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcccccCHHHHHHHHHHHHhcc
Confidence            344556777888888888 888888888888876544555554443 455666666653 33344455777788777542


Q ss_pred             h-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116          145 S-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY  223 (482)
Q Consensus       145 ~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~  223 (482)
                      + ..++.... -....++.+.....-.........++..++..++    .....++..++..--..++.-....+.-+..
T Consensus       207 ~~plk~eh~~-fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp----~l~~~~i~~llk~WP~t~s~Kev~FL~el~~  281 (409)
T PF01603_consen  207 AVPLKEEHKQ-FLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP----SLAEPVIKGLLKHWPKTNSQKEVLFLNELEE  281 (409)
T ss_dssp             -SS--HHHHH-HHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G----GGHHHHHHHHHHHS-SS-HHHHHHHHHHHHH
T ss_pred             CCCCcHHHHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc----hhHHHHHHHHHHhCCCCCchhHHHHHHHHHH
Confidence            2 12211110 0112233333222223334455555555555432    1223344444444445566666666667777


Q ss_pred             hccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHhcCCC----chh
Q 043116          224 LADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLLIHNH----NKS  297 (482)
Q Consensus       224 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~~~----~~~  297 (482)
                      +...-+...-.-+...++..+..++++++..|.+.|+..+.     ++.....+.+.  .++|.+...+....    +..
T Consensus       282 il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~-----n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~  356 (409)
T PF01603_consen  282 ILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWN-----NEYFLSLISQNSRVILPIIFPALYRNSKNHWNQT  356 (409)
T ss_dssp             HHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGG-----SHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTT
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHC-----CHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHH
Confidence            66544322222233356788888899999999999886553     23322222211  35667776664421    567


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH
Q 043116          298 IKKEVCWIISNITAGNREQIQAVI  321 (482)
Q Consensus       298 v~~~a~~~L~nl~~~~~~~~~~l~  321 (482)
                      ++..|..++..+..-+++....+.
T Consensus       357 Vr~~a~~vl~~l~~~d~~lf~~~~  380 (409)
T PF01603_consen  357 VRNLAQNVLKILMEMDPKLFDKCA  380 (409)
T ss_dssp             HHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCHHHHHHHH
Confidence            999999999999887777554433

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.54  E-value=1.1  Score=44.65  Aligned_cols=237  Identities=11%  Similarity=0.034  Sum_probs=141.1

Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC---CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC-
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK---PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG-  227 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~---~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~-  227 (482)
                      .+.|+++.++..-...+...+-...-.+|+.+....   .........-.-|.+..-|+..|..++.+|+..+.++-.- 
T Consensus       126 iE~d~iq~~~~haiha~rsp~~sk~r~Vl~~F~hqkk~~qgVeeml~rL~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~  205 (1005)
T KOG1949|consen  126 IENDCIQDFMFHAIHAPRSPVHSKVREVLSYFHHQKKVRQGVEEMLYRLYKPILWRGLKARNSEVRSNAALLFVEAFPIR  205 (1005)
T ss_pred             HhhhHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHhhccCchhhhhhHHHHHHHhccCC
Confidence            355677777766544443344444444455544432   1222222334456677788899999999999999887622 


Q ss_pred             Cc----HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHH
Q 043116          228 TN----DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVC  303 (482)
Q Consensus       228 ~~----~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~  303 (482)
                      ++    +..+.+++ .-...+.++|.++-+.+|..|..-+..+....-.....-+-..++..+..-+......+||....
T Consensus       206 dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf  284 (1005)
T KOG1949|consen  206 DPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTILIDLLKKITDELAFDTSSDVRCSVF  284 (1005)
T ss_pred             CCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHhhhccchheehhHh
Confidence            11    22333443 34578899999999999998877666554322111111111123334444344443668888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHH
Q 043116          304 WIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI  383 (482)
Q Consensus       304 ~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v  383 (482)
                      ..|..+... |. ...+++ -++|.+-..+.+....+|.++...|..+-..    ....+..---.+.++.-|..++..+
T Consensus       285 ~gl~~~l~n-p~-sh~~le-~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v----ra~~f~~I~~~d~~l~~L~~d~~~v  357 (1005)
T KOG1949|consen  285 KGLPMILDN-PL-SHPLLE-QLLPALRYSLHDNSEKVRVAFVDMLLKIKAV----RAAKFWKICPMDHILVRLETDSRPV  357 (1005)
T ss_pred             cCcHHHHcC-cc-chhHHH-HHHHhcchhhhccchhHHHHHHHHHHHHHhh----hhhhhhccccHHHHHHHHhccccHH
Confidence            888877652 22 122233 2455666667788888998888888776432    2223333344677778888888888


Q ss_pred             HHHHHHHHHHHHH
Q 043116          384 VTVCLIGLENILK  396 (482)
Q Consensus       384 ~~~~l~~L~~l~~  396 (482)
                      ....+..+-+.+-
T Consensus       358 ~rr~~~li~~s~l  370 (1005)
T KOG1949|consen  358 SRRLVSLIFNSFL  370 (1005)
T ss_pred             HHHHHHHHHHhhc
Confidence            7777776666653

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.54  E-value=0.088  Score=44.77  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=77.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC--------CCChHHHHHHHHHHHHH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR--------EDYPQLQFEAARALTNI   98 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~--------~~~~~v~~~a~~~L~~l   98 (482)
                      .....+++.+++.....  ..+..|...+...+..-++.+++.|++..|+.+|..        ....+....+++||..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34566777776654432  445555555555423337788889999999988762        12257889999999999


Q ss_pred             hCCChHhHHHHH-hCCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116           99 ASGTSENTKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNVA  141 (482)
Q Consensus        99 ~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  141 (482)
                      .. +......++ ..+++..|+..+.+++..++..++..|..+|
T Consensus       144 ~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             TS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             Hc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            87 555555555 4678999999999999999999999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=95.52  E-value=5.9  Score=45.44  Aligned_cols=271  Identities=11%  Similarity=0.080  Sum_probs=149.1

Q ss_pred             HHhhcCCCChHHHHHHHHHHHHHhCCCh---HhHHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116           76 VEFLMREDYPQLQFEAARALTNIASGTS---ENTKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFV  151 (482)
Q Consensus        76 ~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~  151 (482)
                      +..-.+++ .++...|+..|..++...-   +....-.+...+.++..++. +.+.++++..+.++.++.....   ..+
T Consensus      1143 ~~vg~~~n-~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~---~nI 1218 (1780)
T PLN03076       1143 VTIGCSEN-LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV---NNV 1218 (1780)
T ss_pred             HHhcCCcc-hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH---hhh
Confidence            33333445 6788888888888775221   21111223345677777665 5678999999999999873321   122


Q ss_pred             HHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcCC-C---CCChhhhhhHHHHHHHHhccC-ChhHHHHHHHHHHH
Q 043116          152 LSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRGK-P---QPPFNQIRPALRVLAQLIRSN-DEKVLTDACRALAY  223 (482)
Q Consensus       152 ~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~~-~---~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~  223 (482)
                       .+ +.+.++.++.   ...++.+...+..++..++.+. +   ......+..++.++..+.... +.++--.++..|++
T Consensus      1219 -kS-GWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~ 1296 (1780)
T PLN03076       1219 -KS-GWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRF 1296 (1780)
T ss_pred             -hc-CcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHH
Confidence             23 5666666663   2345677777888887777653 2   112345567777777776544 46666666666665


Q ss_pred             hcc----CCc-----------------------HHHH-----HHHHhCcHHH---HHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          224 LAD----GTN-----------------------DKIQ-----AVIEAGVCPR---LVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       224 l~~----~~~-----------------------~~~~-----~~~~~~~l~~---L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ++.    ...                       ....     .......++.   |..+..++.++||..|+.+|-.+..
T Consensus      1297 ~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~ 1376 (1780)
T PLN03076       1297 CATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLR 1376 (1780)
T ss_pred             HHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            421    000                       0000     0001123333   3344567788999999998887764


Q ss_pred             CC-----hhhHHHHHhcCchHHHHHHhcCC-----------------Cc--------hhHHHHHHHHHHHHhcCCHHHHH
Q 043116          269 GD-----DFQTQCIINCGALRYLLGLLIHN-----------------HN--------KSIKKEVCWIISNITAGNREQIQ  318 (482)
Q Consensus       269 ~~-----~~~~~~l~~~~~i~~L~~ll~~~-----------------~~--------~~v~~~a~~~L~nl~~~~~~~~~  318 (482)
                      ..     ++.-..+++ +++-++...+++.                 .+        ......|...+.++....-+.+.
T Consensus      1377 ~yG~~Fs~~~W~~if~-~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L~ 1455 (1780)
T PLN03076       1377 NHGHLFSLPLWERVFE-SVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQDAWLYETCTLALQLVVDLFVKFYPTVN 1455 (1780)
T ss_pred             HhhccCCHHHHHHHHH-HHHHHHHHHHHHhhccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            32     122233333 4555555555321                 00        12222333344444332223333


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      .+++ +++..|...+..++..+......+|.+++..
T Consensus      1456 ~~L~-~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076       1456 PLLK-KVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred             HHHH-HHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence            3333 4555555555677888888888888888653

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=95.51  E-value=0.13  Score=35.44  Aligned_cols=67  Identities=19%  Similarity=0.279  Sum_probs=52.1

Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG  324 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  324 (482)
                      .+.|+|++++++. .+.-...+.+.++++.++++.++.+...+|-.+.++|+-++. +.+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence            5679999999987 444456566789999999999988788999999999999976 345455544444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.37  E-value=4.1  Score=42.29  Aligned_cols=174  Identities=20%  Similarity=0.265  Sum_probs=110.0

Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHhc-CCh
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN--REQIQAVIDAGLIGPIVNLLQD-AEF  338 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~~~i~~L~~ll~~-~~~  338 (482)
                      +|+++...++..++.+++.++...+.+.++.-....++..+...+.|++...  .+......... +..+..++.. .+.
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~-~~~f~~~~~~w~~~  572 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFID-FSVFKVLLNKWDSI  572 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHH-HHHHHHHHhhcchh
Confidence            7788888899999999999999999999997667789999999999998732  12111111111 1222223333 334


Q ss_pred             hHHHHHHHHHHHhhcCCCH----HH----HHHHHH--------------cCChHH-HHhcCC-CCCHHHHHHHHHHHHHH
Q 043116          339 GTKKEAAWVISNATSGGTH----EQ----IKHLVR--------------EGCVKP-LCDLLP-CPDPQIVTVCLIGLENI  394 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~~----~~----~~~l~~--------------~~~l~~-L~~ll~-~~~~~v~~~~l~~L~~l  394 (482)
                      +.-..|+..|..+..+++.    ..    ...+.+              ...+.. +..++. +..+.....|++++.++
T Consensus       573 ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~~  652 (699)
T KOG3665|consen  573 ERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKNV  652 (699)
T ss_pred             hHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHHH
Confidence            6777788888888775321    00    011111              112223 444443 34445677888888888


Q ss_pred             HHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHh
Q 043116          395 LKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILETY  448 (482)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~  448 (482)
                      +.....            +++.+.+.+++..+.++-.. ...++...+..+++.+
T Consensus       653 ~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  695 (699)
T KOG3665|consen  653 LEQNKE------------YCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESC  695 (699)
T ss_pred             HHcChh------------hhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcc
Confidence            864333            57777888999988888432 2566666666666554

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.22  E-value=2.4  Score=41.20  Aligned_cols=159  Identities=13%  Similarity=0.110  Sum_probs=114.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC---hHHHHHHHHHHHHHhCCChH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY---PQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~---~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ....+.+.+.++++..+..++..|..++..  .....+++...++..|.+++.+++.   .++...+++++..+..+.- 
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d--~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv-  160 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLD--PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV-  160 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhcccc--HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce-
Confidence            457788889999999999999999988776  5668899999999999999988762   3555666666666554322 


Q ss_pred             hHHHHHhCCChHHHHHhhC--CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          105 NTKVAIDHGAVPIFVKLLA--SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      .....+...++.....+..  ..+..+-..|+..|-++...++..++.+.+.--+..++.++ +..+..++..|...+..
T Consensus       161 vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hl-q~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHL-QVSNQRIQTCAIALLNA  239 (713)
T ss_pred             eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHH-HhcchHHHHHHHHHHHH
Confidence            1111122223333333332  23455667888899988877777788888888899999999 77778888888888888


Q ss_pred             hhcCCCCC
Q 043116          183 FCRGKPQP  190 (482)
Q Consensus       183 L~~~~~~~  190 (482)
                      +....+..
T Consensus       240 l~~~a~~~  247 (713)
T KOG2999|consen  240 LFRKAPDD  247 (713)
T ss_pred             HHhhCChH
Confidence            88776443

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.19  E-value=1  Score=42.87  Aligned_cols=229  Identities=13%  Similarity=0.095  Sum_probs=133.3

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCCh---HhHHHHHhCCChHHHHHhhCC-------CCHHHHHHHHHHHHHhhCCC
Q 043116           75 FVEFLMREDYPQLQFEAARALTNIASGTS---ENTKVAIDHGAVPIFVKLLAS-------PSDDVREQAVWALGNVAGDS  144 (482)
Q Consensus        75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~-------~~~~~~~~a~~~L~~l~~~~  144 (482)
                      +..+++..+ .+-|..|+-.....+...+   .+++.+.+.-+.+.+-+++.+       ++.-.+..++..|..+|+..
T Consensus        16 ~~~L~~~k~-D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKR-DEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccC-hHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            456666666 6788889988898887432   345668888788888888875       23456677888899898654


Q ss_pred             hh--hHHHHHHhCChHHHHHHHcchhhhh------HHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHH
Q 043116          145 SR--CRDFVLSQGALIPLLAELNEHAKLS------MLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTD  216 (482)
Q Consensus       145 ~~--~~~~~~~~~~i~~l~~~l~~~~~~~------~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~  216 (482)
                      +-  ..+.+   +.||.++..+....|++      +...+..+|..++...+.....+..|.++.+.++-.-++...-..
T Consensus        95 ElAsh~~~v---~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   95 ELASHEEMV---SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             hhccCHHHH---HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHH
Confidence            32  22232   25889999986655554      788899999999988777777777899999998866444322221


Q ss_pred             -HHHHHHHhc----cCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh------hHHHHHhcCchHH
Q 043116          217 -ACRALAYLA----DGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF------QTQCIINCGALRY  285 (482)
Q Consensus       217 -~l~~L~~l~----~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~------~~~~l~~~~~i~~  285 (482)
                       ++..+.-..    ..+. ....+..  ++..+..-+...+...+-+.|+.|..+....+.      ......-.....-
T Consensus       172 lal~Vlll~~~~~~cw~e-~~~~fla--li~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G  248 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSE-TIERFLA--LIAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTG  248 (698)
T ss_pred             HHHHHHHHHHHhcccCcC-CHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHH
Confidence             222221111    1111 1111111  133333333334556777788888865543221      1111111122233


Q ss_pred             HHHHhcCCCchhHHHHHHHHHHHHh
Q 043116          286 LLGLLIHNHNKSIKKEVCWIISNIT  310 (482)
Q Consensus       286 L~~ll~~~~~~~v~~~a~~~L~nl~  310 (482)
                      +..+|++.-.+.-|.-|.....|+.
T Consensus       249 ~~~IL~~kv~p~qr~pAL~Laa~~~  273 (698)
T KOG2611|consen  249 VVAILQNKVAPSQRLPALILAANMM  273 (698)
T ss_pred             HHHHHhcccCchhcChHHHHHHHHH
Confidence            4555555434444555555555554

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.11  E-value=0.54  Score=44.53  Aligned_cols=210  Identities=14%  Similarity=0.119  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHH
Q 043116           86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPL  160 (482)
Q Consensus        86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l  160 (482)
                      .++..++..+...+....+.-..++. ..+.....+|.+     ....+...|+..|..++.. +..+..+...+.+..+
T Consensus       111 kvK~~i~~~~~ly~~kY~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~~-~~~~~lf~~~~~L~~I  188 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKYEEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAES-PHHKNLFENKPHLQQI  188 (370)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHTS-HHHHTTT-SHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHcc-hhHHHHhCCHHHHHHH
Confidence            35555666666665533333333332 345555566643     2355667788888887743 2222111111122222


Q ss_pred             HHHH---------------cc------------hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------
Q 043116          161 LAEL---------------NE------------HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------  207 (482)
Q Consensus       161 ~~~l---------------~~------------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------  207 (482)
                      +..+               .+            .....-++.|+..+..|+...+...   ..-+...+..++.      
T Consensus       189 ie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v---~~i~~~~i~~~l~~y~~~~  265 (370)
T PF08506_consen  189 IEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQV---TSILMQYIQQLLQQYASNP  265 (370)
T ss_dssp             HHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-T
T ss_pred             HHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHhhCC
Confidence            2211               00            1112445668888888886532111   1122223333443      


Q ss_pred             cCChhHHHHHHHHHHHhccCCcH------------HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116          208 SNDEKVLTDACRALAYLADGTND------------KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~~------------~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      +.++.-...|+..++.++.....            ....++...+++-|. --.+..|-++..|++.+..+-..-+.  .
T Consensus       266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~--~  342 (370)
T PF08506_consen  266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK--E  342 (370)
T ss_dssp             TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H--H
T ss_pred             cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH--H
Confidence            34677788899988888854321            123344444445444 11234567889999999887764332  2


Q ss_pred             HHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116          276 CIINCGALRYLLGLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L  306 (482)
                      .+  .++++.++..|.++ +.-|+..|+.++
T Consensus       343 ~l--~~~~~~l~~~L~~~-~~vv~tyAA~~i  370 (370)
T PF08506_consen  343 QL--LQIFPLLVNHLQSS-SYVVHTYAAIAI  370 (370)
T ss_dssp             HH--HHHHHHHHHHTTSS--HHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhCCC-CcchhhhhhhhC
Confidence            22  25899999999999 888999998875

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=95.09  E-value=3.7  Score=40.40  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=79.2

Q ss_pred             hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh
Q 043116          192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD  271 (482)
Q Consensus       192 ~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  271 (482)
                      .....+.+..++..+.+++..++..++..|+.+...-.+. ....-.+.+..+.+-+-+..+.||..|+.+|..+-....
T Consensus        86 ~~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~  164 (885)
T COG5218          86 EELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMEL  164 (885)
T ss_pred             hHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccC
Confidence            4455777777888888999999999999999888554432 334445788888888888999999999999998865332


Q ss_pred             hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116          272 FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       272 ~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L  306 (482)
                      ....     .+...+..+++..++.+||..|..-+
T Consensus       165 neen-----~~~n~l~~~vqnDPS~EVRr~allni  194 (885)
T COG5218         165 NEEN-----RIVNLLKDIVQNDPSDEVRRLALLNI  194 (885)
T ss_pred             ChHH-----HHHHHHHHHHhcCcHHHHHHHHHHHe
Confidence            2111     23345777787777889998865433

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=95.08  E-value=0.93  Score=37.94  Aligned_cols=142  Identities=18%  Similarity=0.175  Sum_probs=93.8

Q ss_pred             HHHHHHHHHHHHhCC-ChHhH----HHHHhCC------Ch-HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHh
Q 043116           87 LQFEAARALTNIASG-TSENT----KVAIDHG------AV-PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQ  154 (482)
Q Consensus        87 v~~~a~~~L~~l~~~-~~~~~----~~~~~~g------~i-~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  154 (482)
                      +|..|+.+|..++.. ++..-    ..++..+      .- +.+.-++.++++.+|..|+.++..+..+...+-...-+.
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~   81 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES   81 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence            677788888888774 21110    1122222      22 344446778999999999999999986543221111111


Q ss_pred             -------------------CChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC--hhhhhhHHHHHHHHhccCChhH
Q 043116          155 -------------------GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP--FNQIRPALRVLAQLIRSNDEKV  213 (482)
Q Consensus       155 -------------------~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~--~~~~~~~~~~L~~ll~~~~~~~  213 (482)
                                         ..-..|+..+....+..+....+.++..+....|...  ......++..+..++.+.|+++
T Consensus        82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v  161 (182)
T PF13251_consen   82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV  161 (182)
T ss_pred             CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence                               1233455555555577788899999999999876443  3445677777888888999999


Q ss_pred             HHHHHHHHHHhccCC
Q 043116          214 LTDACRALAYLADGT  228 (482)
Q Consensus       214 ~~~~l~~L~~l~~~~  228 (482)
                      +..++.+++.+....
T Consensus       162 ~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  162 RVAALSCLGALLSVQ  176 (182)
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999998887543

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=94.96  E-value=1.3  Score=44.37  Aligned_cols=256  Identities=13%  Similarity=0.104  Sum_probs=159.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTKVA  109 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~  109 (482)
                      .++..++-.+...+..-...|.+....    ..+.++...++|.|+..+...+ ..++..-.+.+ +.... .++     
T Consensus       258 ~fLeel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~-~k~ld-~~e-----  326 (690)
T KOG1243|consen  258 LFLEELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLTPLFKL-GKDLD-EEE-----  326 (690)
T ss_pred             HHHHhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhhHHHHh-hhhcc-ccc-----
Confidence            344444555555554444444442222    1344555666777776665554 12333222222 22222 122     


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116          110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ  189 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  189 (482)
                      ++.++++.|++++...|..+|-.-+.-+-++...   ..+.+.+..+++.+..-+ .+++..++...+.++..|+..-..
T Consensus       327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~-~DTn~~Lre~Tlksm~~La~kL~~  402 (690)
T KOG1243|consen  327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGF-LDTNATLREQTLKSMAVLAPKLSK  402 (690)
T ss_pred             cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhc-ccCCHHHHHHHHHHHHHHHhhhch
Confidence            5667899999999999999998777666666533   334455666888888888 778888999988888888764311


Q ss_pred             CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCc-HHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGV-CPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       190 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~-l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      .  ......+..+..+-.+.+..++....-|++.++.+.....    ..++ ...+.+-+.++-..-|..+...+.....
T Consensus       403 ~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~~----R~~vL~~aftralkdpf~paR~a~v~~l~at~~  476 (690)
T KOG1243|consen  403 R--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAASV----RKRVLASAFTRALKDPFVPARKAGVLALAATQE  476 (690)
T ss_pred             h--hhcHHHHHHHHhhCccccCcccccceeeecccccccchhh----hccccchhhhhhhcCCCCCchhhhhHHHhhccc
Confidence            1  2224566666666666778899999999999887644322    2333 3344455677777778888777765544


Q ss_pred             CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      ..+..   -+...+++.+..+.-+. +..+|..|-.++..+-.
T Consensus       477 ~~~~~---~va~kIlp~l~pl~vd~-e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  477 YFDQS---EVANKILPSLVPLTVDP-EKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             ccchh---hhhhhccccccccccCc-ccchhhHHHHHHHHHHh
Confidence            32221   23346788888888888 88888888877766644

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=94.78  E-value=0.61  Score=39.01  Aligned_cols=144  Identities=15%  Similarity=0.149  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHhHhhcCChh-----hHHHHHh------cCchHHHH-HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116          254 LVLTAALRTIGNIVTGDDF-----QTQCIIN------CGALRYLL-GLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI  321 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~-----~~~~l~~------~~~i~~L~-~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  321 (482)
                      ++|..|+.+|..++...+.     .-..++-      .+.-+.|+ -++.++ ++++|..|+.++..+..+........-
T Consensus         1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp-~~kvR~aA~~~l~~lL~gsk~~L~~Ae   79 (182)
T PF13251_consen    1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDP-SPKVRAAAASALAALLEGSKPFLAQAE   79 (182)
T ss_pred             ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCC-chhHHHHHHHHHHHHHHccHHHHHHHH
Confidence            3678888888888875221     1111221      12333444 444555 999999999999999887655544333


Q ss_pred             HcC-------------------ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH
Q 043116          322 DAG-------------------LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP  381 (482)
Q Consensus       322 ~~~-------------------~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  381 (482)
                      +.+                   +...|+..++ +.+..+....+.++..++.....++.+.=.-..++..+..++.+.|+
T Consensus        80 ~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~  159 (182)
T PF13251_consen   80 ESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDP  159 (182)
T ss_pred             hcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCC
Confidence            211                   2233334444 34677888899999999987666554332222345566667778999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q 043116          382 QIVTVCLIGLENILKVG  398 (482)
Q Consensus       382 ~v~~~~l~~L~~l~~~~  398 (482)
                      +++..++.+++.++...
T Consensus       160 ~v~v~~l~~~~~l~s~~  176 (182)
T PF13251_consen  160 NVRVAALSCLGALLSVQ  176 (182)
T ss_pred             cHHHHHHHHHHHHHcCC
Confidence            99999999999887543

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=94.60  E-value=0.18  Score=36.81  Aligned_cols=83  Identities=8%  Similarity=0.055  Sum_probs=63.1

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116          241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV  320 (482)
Q Consensus       241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  320 (482)
                      +...+..+.++.+.+|..++..|..+.....  ....-..+++..+...++++ ++.|--.|..+++.++...++     
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~-DsyVYL~aI~~L~~La~~~p~-----   76 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDE-DSYVYLNAIKGLAALADRHPD-----   76 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCC-CchHHHHHHHHHHHHHHHChH-----
Confidence            4567778889999999999999999998665  11122246788888999999 999999999999999875555     


Q ss_pred             HHcCChHHHHHHHh
Q 043116          321 IDAGLIGPIVNLLQ  334 (482)
Q Consensus       321 ~~~~~i~~L~~ll~  334 (482)
                         .+++.|++...
T Consensus        77 ---~vl~~L~~~y~   87 (92)
T PF10363_consen   77 ---EVLPILLDEYA   87 (92)
T ss_pred             ---HHHHHHHHHHh
Confidence               24555555544

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=94.60  E-value=4.4  Score=38.70  Aligned_cols=266  Identities=12%  Similarity=0.040  Sum_probs=134.1

Q ss_pred             CHHHHHHHHHHHHHhhCCChhhHHHHHHhC---ChHHHHHHHcc-hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH
Q 043116          126 SDDVREQAVWALGNVAGDSSRCRDFVLSQG---ALIPLLAELNE-HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV  201 (482)
Q Consensus       126 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~i~~l~~~l~~-~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  201 (482)
                      +.++..+|+.+++.+..+. .....+.+..   ++...+..+.. +.+..+....+|+|+.--.............++..
T Consensus        59 ~~~L~~qALkll~~~l~~~-~i~~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHP-EIVSTLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccH-HHHhhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            6788889999999988443 3222222111   23344444422 33445666677777653333221122222333333


Q ss_pred             HHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC---hhhHHH
Q 043116          202 LAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD---DFQTQC  276 (482)
Q Consensus       202 L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~---~~~~~~  276 (482)
                      +..+-+ -+...+....+.++.++....+....  ... ..++.++..+-+....++..|..++..+...-   ....+.
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~--~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~  215 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMI--KHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKS  215 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHH
Confidence            333333 45677888899999999876654322  222 36778888777777777777665555444221   111111


Q ss_pred             ---HHhc----C-----chHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH-HHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116          277 ---IINC----G-----ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ-IQAVIDAGLIGPIVNLLQDAEFGTKKE  343 (482)
Q Consensus       277 ---l~~~----~-----~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~~~~  343 (482)
                         ..+.    +     +.+.|..++.+. +.....--.|...-...+++.. ....+ +..+...-..+.++++.+|..
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~L~~mi~~~-~~~~~a~~iW~~~i~LL~~~~~~~w~~~-n~wL~v~e~cFn~~d~~~k~~  293 (372)
T PF12231_consen  216 VLEDLQRSLENGKLIQLYCERLKEMIKSK-DEYKLAMQIWSVVILLLGSSRLDSWEHL-NEWLKVPEKCFNSSDPQVKIQ  293 (372)
T ss_pred             HHHHhccccccccHHHHHHHHHHHHHhCc-CCcchHHHHHHHHHHHhCCchhhccHhH-hHHHHHHHHHhcCCCHHHHHH
Confidence               1221    2     334466666664 2223233344443333332210 00111 123333334455789999999


Q ss_pred             HHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCC-CCCH----HHHHHHHHHHHHHHHh
Q 043116          344 AAWVISNATSGG--THEQIKHLVREGCVKPLCDLLP-CPDP----QIVTVCLIGLENILKV  397 (482)
Q Consensus       344 a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~-~~~~----~v~~~~l~~L~~l~~~  397 (482)
                      |..+...+....  +.......... ...++...++ ....    ++...++..+.+++.+
T Consensus       294 A~~aW~~liy~~~~~~~~~~k~l~l-L~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~  353 (372)
T PF12231_consen  294 AFKAWRRLIYASNPNELTSPKRLKL-LCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYY  353 (372)
T ss_pred             HHHHHHHHHHHhcCCccccHHHHHH-HHHHHHHHhCccccccccHHHHHHHHHHHhchHHH
Confidence            998888776521  11111222221 1222233333 2222    5677777777777643

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.55  E-value=0.46  Score=39.32  Aligned_cols=112  Identities=18%  Similarity=0.210  Sum_probs=80.2

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh--cCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CC
Q 043116          239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN--CGALRYLLGLLIHNHNKSIKKEVCWIISNITA---GN  313 (482)
Q Consensus       239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~  313 (482)
                      ....++..+++++++.-|..++..+...+..++.  +.+.+  ...+..++.+++.++.+.+++.++.++..+..   +.
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4567788999999999999999999888876532  22222  24788899999998778889999999998875   55


Q ss_pred             HHHHHHHHHc---CChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          314 REQIQAVIDA---GLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       314 ~~~~~~l~~~---~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      ++..+++.-.   ++++.++.+++.  ......++.+|..+...
T Consensus       103 p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  103 PTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            6655555432   245555555553  56677788888887664

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.53  E-value=2.1  Score=41.61  Aligned_cols=168  Identities=10%  Similarity=0.089  Sum_probs=116.7

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC----hhhHHHHHHHHhHhhcCCh
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS----RLVLTAALRTIGNIVTGDD  271 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~----~~v~~~a~~~L~~l~~~~~  271 (482)
                      ......+...+.++++..+..++..+..++.. ......++....+..|.+++.++.    ..+...++.++..+..+.-
T Consensus        82 ~~~a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv  160 (713)
T KOG2999|consen   82 SHYAKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV  160 (713)
T ss_pred             hHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce
Confidence            34556677888888888888888888888854 456677888888899999987754    3566667777766665332


Q ss_pred             hhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116          272 FQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN  350 (482)
Q Consensus       272 ~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~  350 (482)
                       .........++..+..+..-. .+..+-..|...+-++..+++...+.+.+.--+..|+..++..+..++..|+..+..
T Consensus       161 -vsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na  239 (713)
T KOG2999|consen  161 -VSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA  239 (713)
T ss_pred             -eeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence             111112223333333333221 155677788888888888877767777777789999999999999999998888888


Q ss_pred             hhcCCCHHHHHHHHH
Q 043116          351 ATSGGTHEQIKHLVR  365 (482)
Q Consensus       351 l~~~~~~~~~~~l~~  365 (482)
                      +...+.+..++.+.+
T Consensus       240 l~~~a~~~~R~~~~~  254 (713)
T KOG2999|consen  240 LFRKAPDDKRFEMAK  254 (713)
T ss_pred             HHhhCChHHHHHHHH
Confidence            887766665554443

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=94.52  E-value=3.2  Score=39.38  Aligned_cols=92  Identities=21%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-CCCCh
Q 043116          115 VPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPF  192 (482)
Q Consensus       115 i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~~~~~  192 (482)
                      +..+++-+. +.+..+|..++--|+.-+. ++.++..+...|....++..+.+..+......++.++..+...+ +....
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            455555555 4556788888888888884 56788999999999999999965555545555555555554443 33333


Q ss_pred             hhhhhHHHHHHHHhc
Q 043116          193 NQIRPALRVLAQLIR  207 (482)
Q Consensus       193 ~~~~~~~~~L~~ll~  207 (482)
                      .........+..++.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            223455555566666

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=94.50  E-value=0.99  Score=47.02  Aligned_cols=186  Identities=15%  Similarity=0.091  Sum_probs=127.0

Q ss_pred             HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc
Q 043116          202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC  280 (482)
Q Consensus       202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~  280 (482)
                      +-.-+.+.++.-+..++..+........ ........+.+..++.. +.+.+..+...++.+|..++......... +..
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~  335 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAK  335 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHH
Confidence            4444557788888889888887775443 10001111333344433 35667788889999999998765544332 223


Q ss_pred             CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH
Q 043116          281 GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI  360 (482)
Q Consensus       281 ~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~  360 (482)
                      +..+.+++-+... .+.++..+..++-.++...+.       ...++.++..+.+.++..+..+...+.......++...
T Consensus       336 ~v~p~lld~lkek-k~~l~d~l~~~~d~~~ns~~l-------~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  336 NVFPSLLDRLKEK-KSELRDALLKALDAILNSTPL-------SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             hhcchHHHHhhhc-cHHHHHHHHHHHHHHHhcccH-------HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence            6788888888887 777887777776666542221       13677788889999999999988888877765442222


Q ss_pred             HHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       361 ~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..-.-.++++.++....+.+.+|+..++.++..+++.
T Consensus       408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~  444 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV  444 (815)
T ss_pred             chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence            2222346788899999999999999999999998865

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.48  E-value=0.64  Score=39.35  Aligned_cols=114  Identities=14%  Similarity=0.116  Sum_probs=76.1

Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHHHHh----------------cCchHHHHHHhcCCC-----chhHHHHHHHHH
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN----------------CGALRYLLGLLIHNH-----NKSIKKEVCWII  306 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~----------------~~~i~~L~~ll~~~~-----~~~v~~~a~~~L  306 (482)
                      +.+++......++.+|+|++...... ..+++                ...+..|+..+..+.     ...--...+.++
T Consensus         4 i~~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl   82 (192)
T PF04063_consen    4 ITDPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVL   82 (192)
T ss_pred             ecCCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHH
Confidence            34455567777888888888744332 22221                235666776665511     334456788999


Q ss_pred             HHHhcCCHHHHHHHHH--cCC--hHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH
Q 043116          307 SNITAGNREQIQAVID--AGL--IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR  365 (482)
Q Consensus       307 ~nl~~~~~~~~~~l~~--~~~--i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~  365 (482)
                      +|++. .++.++.+++  .+.  +..|+..+.+.+..-|.-++.+|.|++..  .+...++..
T Consensus        83 ~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd--~~~H~~LL~  142 (192)
T PF04063_consen   83 ANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFD--TDSHEWLLS  142 (192)
T ss_pred             HHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhcc--HhHHHHhcC
Confidence            99986 4777788875  334  77888888888777788899999999984  444455554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.41  E-value=0.36  Score=43.18  Aligned_cols=144  Identities=10%  Similarity=0.159  Sum_probs=100.6

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116          241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV  320 (482)
Q Consensus       241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  320 (482)
                      +...+..|.+.++......+..|..++..+++.....+. .++-.+++-+++. ...|-+.||.+++.+...-.+.+...
T Consensus        90 l~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNl-RS~VsraA~~t~~difs~ln~~i~~~  167 (334)
T KOG2933|consen   90 LKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNL-RSAVSRAACMTLADIFSSLNNSIDQE  167 (334)
T ss_pred             HHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455667788899999999999999998877654443332 4666777888888 88899999999999987433333332


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      .+ +.+-.|..--..++.-++..|-.+|..++.+..|..        +++.|...+.+.++.++..+..++.+..
T Consensus       168 ld-~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~--------~L~~L~~~~~~~n~r~r~~a~~~~~~~v  233 (334)
T KOG2933|consen  168 LD-DLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK--------LLRKLIPILQHSNPRVRAKAALCFSRCV  233 (334)
T ss_pred             HH-HHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH--------HHHHHHHHHhhhchhhhhhhhccccccc
Confidence            22 222222222223456688999999999998766543        5777888888999988887776655544

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=94.40  E-value=3.7  Score=37.05  Aligned_cols=209  Identities=12%  Similarity=0.082  Sum_probs=141.8

Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh----hhHHHHH-hcCchHHHHHHhcCCCc-hhHHHHHHHHH
Q 043116          233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD----FQTQCII-NCGALRYLLGLLIHNHN-KSIKKEVCWII  306 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~-~~~~i~~L~~ll~~~~~-~~v~~~a~~~L  306 (482)
                      +.+.+.|.+..++..+...+-+-+..++.+..++-...-    ....++. +..++..++.-   -++ +++.-.+...+
T Consensus        73 qef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~qvgtr~~tv~Yl~t~~e~~~~lv~~---~~~~~~iaL~cg~ml  149 (342)
T KOG1566|consen   73 QEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQVGTRSPTVEYLETNPEILDNLVKG---YENTPEIALTCGNML  149 (342)
T ss_pred             HHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhhcCCcchHHHHHHhCHHHHHHHHhh---hccchHHHHHHHHHH
Confidence            457778999999999998888888889988888876432    2222222 22344444444   212 44444444455


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC----hHHHHhcCCCCCHH
Q 043116          307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC----VKPLCDLLPCPDPQ  382 (482)
Q Consensus       307 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~----l~~L~~ll~~~~~~  382 (482)
                      ..+.++ +...+.++...-+.....+++.+..++...|......+.... ......+...+.    .+....++.+++.-
T Consensus       150 rEcirh-e~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~H-k~~vaEfl~~n~d~ff~e~~~~Ll~s~Nyv  227 (342)
T KOG1566|consen  150 RECIRH-EFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRH-KSVVAEFLIRNYDNFFAEVYEKLLRSENYV  227 (342)
T ss_pred             HHHHhh-HHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHh-HHHHHHHHHhChhhhHHHHHHHHhccccee
Confidence            555443 444556667788889999999999999999999998888754 333333344333    33366688899988


Q ss_pred             HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116          383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      ++..+++.+..++-...+...         ....+..-.-+..+-.++.+++..+|-.|-.+..-+.-....+
T Consensus       228 tkrqs~kllg~llldr~N~~~---------M~kYiss~enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK~  291 (342)
T KOG1566|consen  228 TKRQSLKLLGELLLDRSNSAV---------MTKYISSPENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNKP  291 (342)
T ss_pred             hHHHHHHhHHHHHhCCCcHHH---------HHHHhcCHHHHHHHHHHhhCccccchHHHHHHHHHHhcCCCCC
Confidence            999999999999876555432         2333444455778888899999999999988887666655543

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=94.31  E-value=3.9  Score=41.25  Aligned_cols=159  Identities=13%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCC
Q 043116          192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGD  270 (482)
Q Consensus       192 ~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~  270 (482)
                      ....+.++|.|...+.+.+..++..++..+..+++.-+.   ..+...+++.+..+- .+.+..++..++-|++.++..-
T Consensus       384 e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l  460 (700)
T KOG2137|consen  384 EEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL  460 (700)
T ss_pred             HHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH
Confidence            344578889888889999999999999999998865442   245556777777653 5567889999999999988321


Q ss_pred             hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH--HHHHH
Q 043116          271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE--AAWVI  348 (482)
Q Consensus       271 ~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~--a~~aL  348 (482)
                      +..  .++  ..+..+.+..+.. ++.+......+..++....+.. ..++-..++|.++.+...+.-...+.  .+..+
T Consensus       461 D~~--~v~--d~~lpi~~~~~~~-dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~L~~~Qy~~~m~~i  534 (700)
T KOG2137|consen  461 DKA--AVL--DELLPILKCIKTR-DPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPSLNGEQYNKYMSEI  534 (700)
T ss_pred             HHH--HhH--HHHHHHHHHhcCC-CcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcccccHHHHHHHHHHH
Confidence            111  111  2344555556666 8888887777777777633332 34444568888888777554332222  33344


Q ss_pred             HHhhcCCCHHH
Q 043116          349 SNATSGGTHEQ  359 (482)
Q Consensus       349 ~~l~~~~~~~~  359 (482)
                      ..+...-++.+
T Consensus       535 ~~ml~~ie~~~  545 (700)
T KOG2137|consen  535 RLMLSAIEKPR  545 (700)
T ss_pred             HHHHhhhhHHH
Confidence            44444333333

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.13  E-value=0.54  Score=39.77  Aligned_cols=123  Identities=13%  Similarity=0.111  Sum_probs=78.0

Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHH----------------hCcHHHHHHhhCC------CChhhHHHHHHHHhH
Q 043116          208 SNDEKVLTDACRALAYLADGTNDKIQAVIE----------------AGVCPRLVKLLGH------RSRLVLTAALRTIGN  265 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~----------------~~~l~~L~~ll~~------~~~~v~~~a~~~L~~  265 (482)
                      .++......++..|+|++..+... ..+++                ...+..|+..+..      ....-....+.++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~-~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGC-EKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHH-HHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            344455666777777877654322 21222                2356667766644      223456667889999


Q ss_pred             hhcCChhhHHHHHhc--Cc--hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh
Q 043116          266 IVTGDDFQTQCIINC--GA--LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQ  334 (482)
Q Consensus       266 l~~~~~~~~~~l~~~--~~--i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~  334 (482)
                      ++. .+..++.+.+.  +.  +..|+.++++. +..-|..++.+|.|+|.....+ ..++.   -+++|.|+--+.
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            987 55556666654  34  78888899988 8888889999999999865443 44443   244555444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=94.04  E-value=1.2  Score=43.62  Aligned_cols=99  Identities=15%  Similarity=0.197  Sum_probs=73.4

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHH
Q 043116          239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--GNREQ  316 (482)
Q Consensus       239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~  316 (482)
                      |++..++..+.+++..||..++.+|+.++..-.+. ...+-.+++..|.+-+-+. .+.||.+|+.+|+.+-.  ++++.
T Consensus        91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eI-De~l~N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREI-DEVLANGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchH-HHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCChHH
Confidence            67788888888999999999999999988754443 3344457888888888777 88899999999999865  33332


Q ss_pred             HHHHHHcCChHHHHHHHh-cCChhHHHHHHH
Q 043116          317 IQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAW  346 (482)
Q Consensus       317 ~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~  346 (482)
                             .+...|..+++ +++.++|..|+.
T Consensus       169 -------~~~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         169 -------RIVNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             -------HHHHHHHHHHhcCcHHHHHHHHHH
Confidence                   23445666666 466788876554

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=0.98  Score=45.09  Aligned_cols=158  Identities=15%  Similarity=0.125  Sum_probs=104.5

Q ss_pred             HHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC-CCh----HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 043116           63 IEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS-GTS----ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWAL  137 (482)
Q Consensus        63 ~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~-~~~----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  137 (482)
                      +++++-.=.-|.+.+-|+..+ ..+|..|+..+.+..- .+|    +-.+.+++. -...+.++|+++-+.+|..|+..+
T Consensus       167 Veeml~rL~~p~l~R~L~a~N-s~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~k-Qf~~l~~LL~d~~p~VRS~a~~gv  244 (1005)
T KOG1949|consen  167 VEEMLYRLYKPILWRGLKARN-SEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQK-QFEELYSLLEDPYPMVRSTAILGV  244 (1005)
T ss_pred             HHHHHHHHHhHHHHHhhccCc-hhhhhhHHHHHHHhccCCCCCccHHHHHHHHHH-HHHHHHHHhcCCCchHHHHHHHHH
Confidence            444444434566677788888 7999999999999764 222    234445543 357788899999999999998888


Q ss_pred             HHhhCCChhh--HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHH
Q 043116          138 GNVAGDSSRC--RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLT  215 (482)
Q Consensus       138 ~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~  215 (482)
                      +.+...-.+.  ...+.  ..+..++.-+..++..+++......|..+....  ......+.++|.+-..+.++...++.
T Consensus       245 ~k~~s~fWe~iP~~i~~--~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np--~sh~~le~~Lpal~~~l~D~se~VRv  320 (1005)
T KOG1949|consen  245 CKITSKFWEMIPPTILI--DLLKKITDELAFDTSSDVRCSVFKGLPMILDNP--LSHPLLEQLLPALRYSLHDNSEKVRV  320 (1005)
T ss_pred             HHHHHHHHHHcCHHHHH--HHHHHHHHHhhhccchheehhHhcCcHHHHcCc--cchhHHHHHHHhcchhhhccchhHHH
Confidence            7776322111  01111  123344444444455577777777777777663  33445567788888888888899998


Q ss_pred             HHHHHHHHhcc
Q 043116          216 DACRALAYLAD  226 (482)
Q Consensus       216 ~~l~~L~~l~~  226 (482)
                      .+...|..+-.
T Consensus       321 A~vd~ll~ik~  331 (1005)
T KOG1949|consen  321 AFVDMLLKIKA  331 (1005)
T ss_pred             HHHHHHHHHHh
Confidence            88888776653

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=93.84  E-value=4.4  Score=35.79  Aligned_cols=201  Identities=22%  Similarity=0.207  Sum_probs=118.4

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV  151 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  151 (482)
                      ++.|+.-+....+++.+...+.+|..++.+......     -++..|..+...+....+..+.+.+..+-..++..-   
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f---   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF---   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence            455555344444489999999999999985412211     235666667777777776677777777764443221   


Q ss_pred             HHhCChHHHHHHH---------cchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh-ccCChhHHHHHHHHH
Q 043116          152 LSQGALIPLLAEL---------NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI-RSNDEKVLTDACRAL  221 (482)
Q Consensus       152 ~~~~~i~~l~~~l---------~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~l~~L  221 (482)
                         +.+..++...         ..+...+.......++..+|...|.    .-..+++.+..++ .+.++.++..++.++
T Consensus        74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l  146 (234)
T PF12530_consen   74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEAL  146 (234)
T ss_pred             ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence               2333333331         0111223344456788888888765    4456788888888 788888999999999


Q ss_pred             HHhccCCcHHHHHHHH-hCcHHHHHHhhCCC-ChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCC
Q 043116          222 AYLADGTNDKIQAVIE-AGVCPRLVKLLGHR-SRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHN  293 (482)
Q Consensus       222 ~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~  293 (482)
                      ..++...      +++ ......+.+-++.+ .+.+....+..+..+.... +...-......++..+.++..+.
T Consensus       147 ~~Lc~~~------vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  147 APLCEAE------VVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             HHHHHHh------hccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence            9999322      111 12334455555443 4555555444444443322 11112234456777788877776

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=93.79  E-value=1.1  Score=35.58  Aligned_cols=74  Identities=9%  Similarity=-0.027  Sum_probs=62.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..+..-+.++++.++..|+..|-.++.++...+...+...+++..|+.++..      .++.|+.+++..+.......
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455667777899999999999999999999888888888888999999998853      46789999999888876543

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=93.70  E-value=0.46  Score=34.73  Aligned_cols=73  Identities=10%  Similarity=0.043  Sum_probs=58.1

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116          198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  272 (482)
                      .+...+..++++.+.+|..++..|+.+....+  ....-..+++..+...++++++-|-.+|+.++..++...+.
T Consensus         4 ~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~   76 (92)
T PF10363_consen    4 TLQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD   76 (92)
T ss_pred             HHHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence            34556667788889999999999999997766  11222346788888999999999999999999999986655

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=93.50  E-value=2.2  Score=41.65  Aligned_cols=156  Identities=15%  Similarity=0.104  Sum_probs=98.8

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-hcCCCChHHHHHHHHHHHHHhCCChHhHHHHHh
Q 043116           33 VAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEF-LMREDYPQLQFEAARALTNIASGTSENTKVAID  111 (482)
Q Consensus        33 ~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~l-l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  111 (482)
                      -+++.+.++.++...+..+.---.+.+        +.|++..++.. .++.+ .++|+.|+-+|+-+|.+++.       
T Consensus       522 ~ell~d~ds~lRy~G~fs~alAy~GTg--------n~~vv~~lLh~avsD~n-DDVrRAAViAlGfvc~~D~~-------  585 (926)
T COG5116         522 NELLYDKDSILRYNGVFSLALAYVGTG--------NLGVVSTLLHYAVSDGN-DDVRRAAVIALGFVCCDDRD-------  585 (926)
T ss_pred             HHHhcCchHHhhhccHHHHHHHHhcCC--------cchhHhhhheeecccCc-hHHHHHHHHheeeeEecCcc-------
Confidence            344456667777766655543333321        24577778877 56667 79999999999999885543       


Q ss_pred             CCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC
Q 043116          112 HGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP  190 (482)
Q Consensus       112 ~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~  190 (482)
                        .+...+++|. +.++.+|...+.+|+-.|.+.-..  .     .+..|-.++ .+...-+++.|+-++..+.......
T Consensus       586 --~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~--~-----a~diL~~L~-~D~~dfVRQ~AmIa~~mIl~Q~n~~  655 (926)
T COG5116         586 --LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK--V-----ATDILEALM-YDTNDFVRQSAMIAVGMILMQCNPE  655 (926)
T ss_pred             --hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH--H-----HHHHHHHHh-hCcHHHHHHHHHHHHHHHHhhcCcc
Confidence              4555566655 678889988888898888544221  1     122333333 5566667777888888777765444


Q ss_pred             ChhhhhhHHHHHHHHhccCChhHH
Q 043116          191 PFNQIRPALRVLAQLIRSNDEKVL  214 (482)
Q Consensus       191 ~~~~~~~~~~~L~~ll~~~~~~~~  214 (482)
                      -.....++...+.+++.....+-.
T Consensus       656 Lnp~v~~I~k~f~~vI~~Khe~gl  679 (926)
T COG5116         656 LNPNVKRIIKKFNRVIVDKHESGL  679 (926)
T ss_pred             cChhHHHHHHHHHHHHhhhhHhHH
Confidence            444556777777777765544433

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=93.42  E-value=6  Score=38.51  Aligned_cols=274  Identities=11%  Similarity=0.097  Sum_probs=130.8

Q ss_pred             HHHHHHhhcC---CCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC----C
Q 043116           72 VPRFVEFLMR---EDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAG----D  143 (482)
Q Consensus        72 ~~~L~~ll~~---~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~----~  143 (482)
                      +..|..++..   .+++.+-...++++..+...-......+++ ..+..+....++ .+|..-.....+++.+.+    .
T Consensus        28 l~~Lf~~i~~~~s~ENeylMk~iMRvl~~~~e~~~p~~~~il~-~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~  106 (435)
T PF03378_consen   28 LQNLFALIEKPGSAENEYLMKCIMRVLSVLQEDILPIAVEILQ-HLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEA  106 (435)
T ss_dssp             HHHHHHHHHTT-STC-HHHHHHHHHHHHHSTTTTGGGHHHHHH-HHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GG
T ss_pred             HHHHHHHHhcCCCccchHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCC
Confidence            4445555543   222445555556655554433333344433 234444444454 356666655555555542    2


Q ss_pred             ChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC-CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116          144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP-QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALA  222 (482)
Q Consensus       144 ~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~  222 (482)
                      ++... .-.+...+|.+..+| ..+-.+..-++..+++.+....+ .........++|.++.-.-.....-.-...+.|.
T Consensus       107 ~~~~v-~~~E~~L~P~f~~IL-q~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~  184 (435)
T PF03378_consen  107 DPEAV-SQFEEALFPPFQEIL-QQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQ  184 (435)
T ss_dssp             GHH----HHHHHHHHHHHHHH-HTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHH
T ss_pred             ChhHH-HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHH
Confidence            22211 122444677777777 44445677778888888877654 2222333455555443322222222234444444


Q ss_pred             HhccCCcHHHHHHHHh----CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh-HHHHHhcCchHHHHHHhcCCCchh
Q 043116          223 YLADGTNDKIQAVIEA----GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ-TQCIINCGALRYLLGLLIHNHNKS  297 (482)
Q Consensus       223 ~l~~~~~~~~~~~~~~----~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~~~i~~L~~ll~~~~~~~  297 (482)
                      ......+...   ...    +++..+-+++.+...+  ..+...|..+..+-+.. ....+ ..++..+..-|++....+
T Consensus       185 a~i~k~~~~i---~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl-~~I~~lll~RLq~skT~k  258 (435)
T PF03378_consen  185 AYIKKDPSFI---VANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYL-KQIFTLLLTRLQSSKTEK  258 (435)
T ss_dssp             HHHHHHGGG-------S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGH-HHHHHHHHHHHHHC--HH
T ss_pred             HHHHhCchhh---cchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHH-HHHHHHHHHHHhhCCcHH
Confidence            4443333221   212    3445555667665432  44667777777654432 11111 235556666666554666


Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHH---cCChHHHHHHH--h---c-CChhHHHHHHHHHHHhhcC
Q 043116          298 IKKEVCWIISNITA-GNREQIQAVID---AGLIGPIVNLL--Q---D-AEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       298 v~~~a~~~L~nl~~-~~~~~~~~l~~---~~~i~~L~~ll--~---~-~~~~~~~~a~~aL~~l~~~  354 (482)
                      ..+.-+..++.++. .+++..-..++   .|++..++.-+  .   . ..+.-|+.++.+++++...
T Consensus       259 f~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~e  325 (435)
T PF03378_consen  259 FVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCE  325 (435)
T ss_dssp             HHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhc
Confidence            66666666666654 44554444443   55555555421  1   1 2344567777777777653

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=93.32  E-value=4.2  Score=42.00  Aligned_cols=197  Identities=18%  Similarity=0.131  Sum_probs=97.3

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC----CCHHHHHHHHHHHHHhhCCChh-
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS----PSDDVREQAVWALGNVAGDSSR-  146 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~a~~~L~~l~~~~~~-  146 (482)
                      +..+.+++.... .. ...|...|..+.........     ..+..+..++..    .++.++..|+-+++.+...... 
T Consensus       397 v~~i~~~I~~~~-~~-~~ea~~~l~~l~~~~~~Pt~-----e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~  469 (618)
T PF01347_consen  397 VKFIKDLIKSKK-LT-DDEAAQLLASLPFHVRRPTE-----ELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVN  469 (618)
T ss_dssp             HHHHHHHHHTT--S--HHHHHHHHHHHHHT-----H-----HHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCC-CC-HHHHHHHHHHHHhhcCCCCH-----HHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeec
Confidence            445556665543 11 22244444444332212211     234555555553    4566777777777766521100 


Q ss_pred             --------hHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC---Chh
Q 043116          147 --------CRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN---DEK  212 (482)
Q Consensus       147 --------~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~  212 (482)
                              ..........++.+...+.   ...+..-+..++.+|.|+-.          ...++.+..++...   ...
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~----------~~~i~~l~~~i~~~~~~~~~  539 (618)
T PF01347_consen  470 SDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH----------PESIPVLLPYIEGKEEVPHF  539 (618)
T ss_dssp             -----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-----------GGGHHHHHTTSTTSS-S-HH
T ss_pred             ccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC----------chhhHHHHhHhhhccccchH
Confidence                    0011112234566666664   22344556667788888753          24566677766655   567


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh
Q 043116          213 VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL  290 (482)
Q Consensus       213 ~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll  290 (482)
                      +|..|+++|..++...++...        +.++++..+  .+.++|..|+..|..   .+|..       ..+..+...+
T Consensus       540 ~R~~Ai~Alr~~~~~~~~~v~--------~~l~~I~~n~~e~~EvRiaA~~~lm~---~~P~~-------~~l~~i~~~l  601 (618)
T PF01347_consen  540 IRVAAIQALRRLAKHCPEKVR--------EILLPIFMNTTEDPEVRIAAYLILMR---CNPSP-------SVLQRIAQSL  601 (618)
T ss_dssp             HHHHHHHTTTTGGGT-HHHHH--------HHHHHHHH-TTS-HHHHHHHHHHHHH---T---H-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCcHHHH--------HHHHHHhcCCCCChhHHHHHHHHHHh---cCCCH-------HHHHHHHHHH
Confidence            888888888888766554332        566666644  345677777665543   23432       2345566777


Q ss_pred             cCCCchhHHHHHH
Q 043116          291 IHNHNKSIKKEVC  303 (482)
Q Consensus       291 ~~~~~~~v~~~a~  303 (482)
                      ...++..|.....
T Consensus       602 ~~E~~~QV~sfv~  614 (618)
T PF01347_consen  602 WNEPSNQVASFVY  614 (618)
T ss_dssp             TT-S-HHHHHHHH
T ss_pred             hhCchHHHHHHHH
Confidence            6664566655443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=93.31  E-value=12  Score=39.29  Aligned_cols=129  Identities=16%  Similarity=0.110  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh
Q 043116          127 DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI  206 (482)
Q Consensus       127 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll  206 (482)
                      +.++..++-+++++|-......+     ..+|.+++-|..++...++.+.+-++..+|..-    ..+....+|.+...|
T Consensus       945 ~~vra~~vvTlakmcLah~~LaK-----r~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~Y----Tam~d~YiP~I~~~L 1015 (1529)
T KOG0413|consen  945 DKVRAVGVVTLAKMCLAHDRLAK-----RLMPMLVKELEYNTAHAIRNNIVLAMGDICSSY----TAMTDRYIPMIAASL 1015 (1529)
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHH-----HHHHHHHHHHHhhhHHHHhcceeeeehhhHHHH----HHHHHHhhHHHHHHh
Confidence            56778888899999854433222     257888888877777777777777777776542    234467899999999


Q ss_pred             ccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       207 ~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      .++++-++...+-.|.++.+..--.    +...++-+++.-+-+.+++++..|=.+++.+..
T Consensus      1016 ~Dp~~iVRrqt~ilL~rLLq~~~vK----w~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1016 CDPSVIVRRQTIILLARLLQFGIVK----WNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred             cCchHHHHHHHHHHHHHHHhhhhhh----cchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence            9999999999999999998543211    122334444555556777888888777777654

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=93.29  E-value=1.1  Score=38.01  Aligned_cols=111  Identities=13%  Similarity=0.104  Sum_probs=71.9

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHH-hccCCcHHHHHHHHhCcHHHHHHhhCC---------CChhhHHHHHHHHhHh
Q 043116          197 PALRVLAQLIRSNDEKVLTDACRALAY-LADGTNDKIQAVIEAGVCPRLVKLLGH---------RSRLVLTAALRTIGNI  266 (482)
Q Consensus       197 ~~~~~L~~ll~~~~~~~~~~~l~~L~~-l~~~~~~~~~~~~~~~~l~~L~~ll~~---------~~~~v~~~a~~~L~~l  266 (482)
                      .....++..+.+.....  ..+..|.. |-..+....+.+++.|++..|+.+|..         .+......++.|+..+
T Consensus        66 ~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal  143 (187)
T PF06371_consen   66 SSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKAL  143 (187)
T ss_dssp             HHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHH
Confidence            34444555555443221  23333322 223444567778888888998888743         2346788899999999


Q ss_pred             hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116          267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT  310 (482)
Q Consensus       267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~  310 (482)
                      +.........+-..+++..+...+.++ +..+|..++..|+.+|
T Consensus       144 ~n~~~G~~~v~~~~~~v~~i~~~L~s~-~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  144 MNTKYGLEAVLSHPDSVNLIALSLDSP-NIKTRKLALEILAALC  186 (187)
T ss_dssp             TSSHHHHHHHHCSSSHHHHHHHT--TT-SHHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHcCcHHHHHHHHHHCCC-CHHHHHHHHHHHHHHH
Confidence            875555444444578999999999988 9999999999998886

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.26  E-value=6  Score=35.55  Aligned_cols=213  Identities=12%  Similarity=0.080  Sum_probs=130.6

Q ss_pred             chhhhhHHHHHHHHHHHhhcCCCCC--ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHH
Q 043116          166 EHAKLSMLRTATWTLSNFCRGKPQP--PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPR  243 (482)
Q Consensus       166 ~~~~~~~~~~a~~~L~~L~~~~~~~--~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~  243 (482)
                      .++++.++..++.+|+.+...-+..  ......-++.....-+  .|......++.++..+.....-....  ...++..
T Consensus         9 tsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl--~D~~~~~~~l~gl~~L~~~~~~~~~~--~~~i~~~   84 (262)
T PF14500_consen    9 TSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRL--DDHACVQPALKGLLALVKMKNFSPES--AVKILRS   84 (262)
T ss_pred             CCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHh--ccHhhHHHHHHHHHHHHhCcCCChhh--HHHHHHH
Confidence            5678888999999999888765422  2222334444444444  35556666677776666332211110  1122333


Q ss_pred             HHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Q 043116          244 LVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI  321 (482)
Q Consensus       244 L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~  321 (482)
                      +.+...  .-....|..+..++..+......... -+..+++..+++.++.+.||+.-..+...+..+...-+      +
T Consensus        85 l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~-~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~------~  157 (262)
T PF14500_consen   85 LFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQ-SMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD------I  157 (262)
T ss_pred             HHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHH-hchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc------c
Confidence            333222  22346888899999998875443332 23346888899999988899888887777777765211      1


Q ss_pred             HcCChHHHHHHHh---------c-CCh--hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116          322 DAGLIGPIVNLLQ---------D-AEF--GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI  389 (482)
Q Consensus       322 ~~~~i~~L~~ll~---------~-~~~--~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~  389 (482)
                       ....+.+.+.+.         . +++  -.+..-..+|.+... +++.....     +++.|++-|.++.+.++.-++.
T Consensus       158 -~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~-s~~~fa~~-----~~p~LleKL~s~~~~~K~D~L~  230 (262)
T PF14500_consen  158 -SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS-STPLFAPF-----AFPLLLEKLDSTSPSVKLDSLQ  230 (262)
T ss_pred             -chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc-CcHhhHHH-----HHHHHHHHHcCCCcHHHHHHHH
Confidence             234444555443         1 122  245566667777665 35666555     8999999999999888887777


Q ss_pred             HHHHHHH
Q 043116          390 GLENILK  396 (482)
Q Consensus       390 ~L~~l~~  396 (482)
                      .|...+.
T Consensus       231 tL~~c~~  237 (262)
T PF14500_consen  231 TLKACIE  237 (262)
T ss_pred             HHHHHHH
Confidence            7777654

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=93.22  E-value=1.6  Score=35.85  Aligned_cols=147  Identities=11%  Similarity=0.060  Sum_probs=87.4

Q ss_pred             hhhHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhh
Q 043116          195 IRPALRVLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ  273 (482)
Q Consensus       195 ~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~  273 (482)
                      ...+++.|..+++++ ++++|..++++++.+..-++...+......  +.-  .-...+.......+.. .......++ 
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~--~~~--~~~~~~~~~~~~~l~~-~~~~~~~ee-   81 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSL--DSK--SSENSNDESTDISLPM-MGISPSSEE-   81 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccC--Ccc--ccccccccchhhHHhh-ccCCCchHH-
Confidence            357888889998865 589999999999999988876544222110  000  0001111122222211 111111222 


Q ss_pred             HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116          274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT  352 (482)
Q Consensus       274 ~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~  352 (482)
                         ..-...+..|+.+|+++.-..-...+..++.++... ......++-  .++|.+++.++..++..++....-|+.+.
T Consensus        82 ---~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~lv  156 (160)
T PF11865_consen   82 ---YYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLADLV  156 (160)
T ss_pred             ---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence               222346778888998875555566777787777742 222233333  38999999999777788888777777765

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=93.15  E-value=0.69  Score=37.14  Aligned_cols=74  Identities=8%  Similarity=0.024  Sum_probs=63.7

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..|..-+.+.++.++..|+..|..++.++.......+.+..++..|..++.. .++.|+.+++..+.......
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            556666677889999999999999999999998888888889999999999987 77889999999888876543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.14  E-value=8.5  Score=36.99  Aligned_cols=190  Identities=11%  Similarity=0.043  Sum_probs=115.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--CcHHHHHhcCCHHHHHHhhcCCCC----h--HHHHHHHHHHHHHhCCC
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRN--SPIEKVIQSGVVPRFVEFLMREDY----P--QLQFEAARALTNIASGT  102 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~g~~~~L~~ll~~~~~----~--~v~~~a~~~L~~l~~~~  102 (482)
                      .+..+.+..+.+-++.|+....++....+-  ...+.+.+.-+++.+-+++.+.+-    |  -.+.-++.+|...|+ .
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~-~   93 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR-V   93 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC-C
Confidence            356666777778899999999999987532  234557788888998888875431    2  245667778888887 5


Q ss_pred             hHhH--HHHHhCCChHHHHHhhCC-CC------HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHH
Q 043116          103 SENT--KVAIDHGAVPIFVKLLAS-PS------DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSML  173 (482)
Q Consensus       103 ~~~~--~~~~~~g~i~~L~~ll~~-~~------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~  173 (482)
                      |+..  ..++  +-||.|++++.. .+      ..+.+.+-.+|..++... .....++..|.++.+.++-.-+....-.
T Consensus        94 pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e-~G~~~Lia~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   94 PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAE-AGLMTLIASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCC-chhHHHHhcCchHHHHHHHhCCCCchhH
Confidence            5543  3333  358889988864 22      236778888999998764 4567778899999998766322211112


Q ss_pred             HHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116          174 RTATWTLSNFCRGK--PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL  224 (482)
Q Consensus       174 ~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l  224 (482)
                      .-++.++.-+...-  =......+..++..+..=+...+.......+..|..+
T Consensus       171 alal~Vlll~~~~~~cw~e~~~~flali~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  171 ALALKVLLLLVSKLDCWSETIERFLALIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHHhcccCcCCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            22333322222221  0111122223344444444445566667777777643

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=93.10  E-value=6.3  Score=35.40  Aligned_cols=223  Identities=13%  Similarity=0.092  Sum_probs=133.5

Q ss_pred             HHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHHHHHHHhhcCCCCCChhhh
Q 043116          117 IFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTATWTLSNFCRGKPQPPFNQI  195 (482)
Q Consensus       117 ~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~~~L~~L~~~~~~~~~~~~  195 (482)
                      .|-..|.++++.+|..|+.+|+.+...-+..  . ....-+..++....+. .|......++..+..|.... .......
T Consensus         3 ~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~--~-L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~-~~~~~~~   78 (262)
T PF14500_consen    3 SLGEYLTSEDPIIRAKALELLSEVLERLPPD--F-LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMK-NFSPESA   78 (262)
T ss_pred             chhhhhCCCCHHHHHHHHHHHHHHHHhCCHh--h-ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCc-CCChhhH
Confidence            4556788899999999999999888554421  1 1112234444443221 34445555577777777443 2222233


Q ss_pred             hhHHHHHHHHhc--cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChh
Q 043116          196 RPALRVLAQLIR--SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       196 ~~~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~  272 (482)
                      ..++..+.+-.+  +.-...|..+...+..+..+....... ...+++..++..+.. .||.-...++..+..+....+-
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~  157 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI  157 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc
Confidence            444444444322  233567888888888888664433321 223567777777754 5788777788777777654331


Q ss_pred             hHHHHHhcCchHHHHHHhcC--------CC-ch--hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 043116          273 QTQCIINCGALRYLLGLLIH--------NH-NK--SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTK  341 (482)
Q Consensus       273 ~~~~l~~~~~i~~L~~ll~~--------~~-~~--~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~  341 (482)
                             ....+.+.+.+..        +. ++  -.+..-...|.++...++..     ..-.+|.|++-|.++.+.++
T Consensus       158 -------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~f-----a~~~~p~LleKL~s~~~~~K  225 (262)
T PF14500_consen  158 -------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLF-----APFAFPLLLEKLDSTSPSVK  225 (262)
T ss_pred             -------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhh-----HHHHHHHHHHHHcCCCcHHH
Confidence                   2334444444421        11 22  24455556666666554442     23478899999999999999


Q ss_pred             HHHHHHHHHhhcCCC
Q 043116          342 KEAAWVISNATSGGT  356 (482)
Q Consensus       342 ~~a~~aL~~l~~~~~  356 (482)
                      ..++.+|..++..-.
T Consensus       226 ~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  226 LDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHCC
Confidence            999999998876433

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.06  E-value=3.3  Score=35.07  Aligned_cols=146  Identities=18%  Similarity=0.195  Sum_probs=91.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      ++.+++..-+++..++..|+..+.-+...+=-.+      ...+|.++.+..+++ +.++..|...+..+....+.....
T Consensus        10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP------~~cvp~lIAL~ts~~-~~ir~~A~~~l~~l~eK~~s~v~~   82 (187)
T PF12830_consen   10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNP------KQCVPTLIALETSPN-PSIRSRAYQLLKELHEKHESLVES   82 (187)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCCh------HHHHhHhhhhhCCCC-hHHHHHHHHHHHHHHHHhHHHHHH
Confidence            5777888889999999999999998887641111      126899999999999 999999999999998755555433


Q ss_pred             HHhCCChHHH--HHhhCCCCH-HH---HHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh-------hhhHHHH
Q 043116          109 AIDHGAVPIF--VKLLASPSD-DV---REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA-------KLSMLRT  175 (482)
Q Consensus       109 ~~~~g~i~~L--~~ll~~~~~-~~---~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~-------~~~~~~~  175 (482)
                      -...|+-...  ..-+..... ..   .......+..+...+...|..+     +..+++.+....       ...-...
T Consensus        83 ~~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F-----l~~l~k~f~~~~~~~~~~~~~~~l~~  157 (187)
T PF12830_consen   83 RYSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF-----LKSLLKQFDFDLTKLSSESSPSDLDF  157 (187)
T ss_pred             HHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH-----HHHHHHHHHhhccccccccchhHHHH
Confidence            3333322221  111222111 11   4455666667776555555554     456666663322       2334455


Q ss_pred             HHHHHHHhhcC
Q 043116          176 ATWTLSNFCRG  186 (482)
Q Consensus       176 a~~~L~~L~~~  186 (482)
                      ..++..||+.-
T Consensus       158 ~~Fla~nLA~l  168 (187)
T PF12830_consen  158 LLFLAENLATL  168 (187)
T ss_pred             HHHHHHHHhcC
Confidence            66666666655

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=93.02  E-value=17  Score=40.20  Aligned_cols=148  Identities=16%  Similarity=0.115  Sum_probs=91.7

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116          239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ  318 (482)
Q Consensus       239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  318 (482)
                      +++|.|-.-|.+.+..+|..|...+|.+......... --........+.-+.+. +..||.++.....++...++....
T Consensus       259 ~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~-~~~vR~~~v~~~~~~l~~~~~~~~  336 (1266)
T KOG1525|consen  259 AVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDI-SVEVRMECVESIKQCLLNNPSIAK  336 (1266)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccC-ChhhhhhHHHHhHHHHhcCchhhh
Confidence            6788888888899999999999999999874443211 01124556666677777 888999999988888776555322


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ...   ....+..  .+.|+.++.....++..+..   ......+... .+..+.+.+.+..+.|+..|+..|..+++.
T Consensus       337 ~~~---~~~~l~~--~~~D~~~rir~~v~i~~~~v---~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  337 AST---ILLALRE--RDLDEDVRVRTQVVIVACDV---MKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             HHH---HHHHHHh--hcCChhhhheeeEEEEEeeh---hHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            211   1222221  23344444332222221111   1122222333 566666777788889999999999998873

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=92.99  E-value=1.6  Score=43.95  Aligned_cols=135  Identities=18%  Similarity=0.124  Sum_probs=93.8

Q ss_pred             hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC
Q 043116          111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP  190 (482)
Q Consensus       111 ~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~  190 (482)
                      ...+++.|...+++.+..+++.++..+..++..-+.   ..+..-++|.+-.+...+.+..++.+++-|+..+...   .
T Consensus       387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~---~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~---l  460 (700)
T KOG2137|consen  387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESIDV---PFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR---L  460 (700)
T ss_pred             HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccH---HHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH---H
Confidence            345678888888999999999999999988843321   2334446788877776778888999999999988832   2


Q ss_pred             ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC
Q 043116          191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS  252 (482)
Q Consensus       191 ~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~  252 (482)
                      +....-..+..+....+..++.+....+++..++....... ..+....+++.++.+...+.
T Consensus       461 D~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  461 DKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhccc
Confidence            33333445555666677889999988888888877544432 23444466777776665444

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=92.95  E-value=1.9  Score=34.60  Aligned_cols=74  Identities=8%  Similarity=0.016  Sum_probs=62.9

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..|..-+.++++.++..|+..|..++.++.......+.+.++++.|..++. ..++.|+.+++..+.......
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  116 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF  116 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence            56667777788999999999999999999988888888888899999999887 567789999999988887544

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.75  E-value=8.6  Score=36.03  Aligned_cols=163  Identities=14%  Similarity=0.150  Sum_probs=118.5

Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHH-cCC-hHHHHHHHhc-----CC--------hhHHHHHHH
Q 043116          283 LRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVID-AGL-IGPIVNLLQD-----AE--------FGTKKEAAW  346 (482)
Q Consensus       283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~-~~~-i~~L~~ll~~-----~~--------~~~~~~a~~  346 (482)
                      ++.+...|.+. ...+...+...|..++. ........++. -++ .+.+-.++..     ++        +.+|...+.
T Consensus        58 ~k~lyr~L~~~-~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~  136 (330)
T PF11707_consen   58 LKLLYRSLSSS-KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIR  136 (330)
T ss_pred             HHHHHHHhCcC-cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHH
Confidence            77788889888 77788899999999998 66666666664 333 4455555531     11        289999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHc-CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHH
Q 043116          347 VISNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK  425 (482)
Q Consensus       347 aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (482)
                      .+..+...+++.....+++. +.+..+..-+..++++++...+..|..-+-.++....        ..+..+-....+.+
T Consensus       137 F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r--------~~K~~~fn~~~L~~  208 (330)
T PF11707_consen  137 FWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSR--------STKCKLFNEWTLSQ  208 (330)
T ss_pred             HHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCCh--------hhhhhhcCHHHHHH
Confidence            99999988888877777754 6688888888888889999999998865443333221        12333335667888


Q ss_pred             HHHhhcCCCH----HHHHHHHHHHHHhcCCCCC
Q 043116          426 IENLQSHDNN----DIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       426 l~~l~~~~~~----~v~~~a~~~l~~~~~~~~~  454 (482)
                      |..+-..+++    .+.+.+.+.+..+.-+...
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~~  241 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPKH  241 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcCCCc
Confidence            9998777777    8899999999887754444

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.57  E-value=1.7  Score=38.99  Aligned_cols=145  Identities=18%  Similarity=0.217  Sum_probs=101.9

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      ...+...+..|.+.+++.....+..+..++...++.....+. .++-.+++-+++....|-..||.+++.+...-.....
T Consensus        87 ~~al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~-~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~  165 (334)
T KOG2933|consen   87 EAALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLH-EVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID  165 (334)
T ss_pred             HHHHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666777888999999999999999999877655443333 4566677778888888999999999999874443333


Q ss_pred             HHHhcCchHHHHHHhcC-C--CchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          276 CIINCGALRYLLGLLIH-N--HNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~-~--~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                      .     -++.++..|.+ .  .+..++..|-.+|..+..+ .|.        .+++.|+..+...++.++..++.+..+.
T Consensus       166 ~-----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~--------~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  166 Q-----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQ--------KLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             H-----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChH--------HHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            2     23333333322 1  1556888898888888763 333        3566777778888888888888777666


Q ss_pred             hcC
Q 043116          352 TSG  354 (482)
Q Consensus       352 ~~~  354 (482)
                      ...
T Consensus       233 v~r  235 (334)
T KOG2933|consen  233 VIR  235 (334)
T ss_pred             cee
Confidence            543

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=92.37  E-value=2.5  Score=39.85  Aligned_cols=219  Identities=18%  Similarity=0.118  Sum_probs=111.9

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116           67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR  146 (482)
Q Consensus        67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  146 (482)
                      +...++..+..++..+.++......+.++..-....    ..-+...++..+.+-+.+..+.+|+.-+..++......+.
T Consensus        19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~----~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~   94 (339)
T PF12074_consen   19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFL----SSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPN   94 (339)
T ss_pred             hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHh----CcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccC
Confidence            334456667777765543566666666666544311    1112234567778888887777998888888887641111


Q ss_pred             hHHHHHHhCChHHHHHHHcchhhhhHHH------HHHHHHHHhhcCC-CCCCh-hhhhhH-----HHH-H--HHHhcc-C
Q 043116          147 CRDFVLSQGALIPLLAELNEHAKLSMLR------TATWTLSNFCRGK-PQPPF-NQIRPA-----LRV-L--AQLIRS-N  209 (482)
Q Consensus       147 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~------~a~~~L~~L~~~~-~~~~~-~~~~~~-----~~~-L--~~ll~~-~  209 (482)
                      ....-.-..+++.++..+..........      .++.++..+.... +.... ......     =|. +  -++... .
T Consensus        95 ~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~  174 (339)
T PF12074_consen   95 SDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA  174 (339)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC
Confidence            1111112236777777774322111111      1222222211111 00000 000000     000 0  012222 4


Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116          210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL  287 (482)
Q Consensus       210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~  287 (482)
                      +++-....++++..+..+.......-....+-..++.++.++  .+.+|..|+.++..+...++..    +...++..+.
T Consensus       175 ~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~----l~~~li~~l~  250 (339)
T PF12074_consen  175 SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL----LSKSLISGLW  250 (339)
T ss_pred             CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH----HHHHHHHHHH
Confidence            555666677777776654332221111223456788888777  7899999999999998877764    2234556666


Q ss_pred             HHhcCC
Q 043116          288 GLLIHN  293 (482)
Q Consensus       288 ~ll~~~  293 (482)
                      +.+...
T Consensus       251 ~~l~~~  256 (339)
T PF12074_consen  251 KWLSSS  256 (339)
T ss_pred             HHHHhc
Confidence            666544

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.30  E-value=7.6  Score=34.30  Aligned_cols=205  Identities=14%  Similarity=0.090  Sum_probs=116.9

Q ss_pred             hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHH
Q 043116          157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI  236 (482)
Q Consensus       157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~  236 (482)
                      ++.++.-+.+..+++.....+.+|..++..+   . ....-++..+..+...+..+...-+.+.+..+-...+...    
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~---~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f----   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHK---N-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF----   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccC---c-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH----
Confidence            4455555667788889999999999999885   1 3345667777777777777776677777777776554322    


Q ss_pred             HhCcHHHHHHh-----h---C--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh-cCCCchhHHHHHHHH
Q 043116          237 EAGVCPRLVKL-----L---G--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL-IHNHNKSIKKEVCWI  305 (482)
Q Consensus       237 ~~~~l~~L~~l-----l---~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~v~~~a~~~  305 (482)
                        +.+..++..     .   .  +...+.......++..++...++...     .+++.+..++ ++. ++.++..+..+
T Consensus        74 --~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~-----~ll~~ls~~L~~~~-~~~~~alale~  145 (234)
T PF12530_consen   74 --PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGV-----DLLPLLSGCLNQSC-DEVAQALALEA  145 (234)
T ss_pred             --HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHH-----HHHHHHHHHHhccc-cHHHHHHHHHH
Confidence              233333333     1   1  12233445556678888876666322     3567788888 566 88888899999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH
Q 043116          306 ISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ  382 (482)
Q Consensus       306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  382 (482)
                      +..++...--....     ....+..-+. +..+.+.+..+..+..+....-...........++..+-++..+.+.+
T Consensus       146 l~~Lc~~~vvd~~s-----~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~~  218 (234)
T PF12530_consen  146 LAPLCEAEVVDFYS-----AWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDVN  218 (234)
T ss_pred             HHHHHHHhhccHHH-----HHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccccc
Confidence            99998421111111     2222222223 234555544333333332221111112223445666666666666543

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=92.08  E-value=2.6  Score=32.55  Aligned_cols=94  Identities=11%  Similarity=0.159  Sum_probs=64.8

Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHH-HHh
Q 043116          342 KEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLV-EEA  420 (482)
Q Consensus       342 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~  420 (482)
                      .....-|.+++.. ++.....     +++.|..-|++.++.|+.+++.+|..++..+...           |...+ ..+
T Consensus        19 gy~~~Eia~~t~~-s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~-----------f~~~~~~~~   81 (122)
T cd03572          19 GYLYEEIAKLTRK-SVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD-----------FKRELQRNS   81 (122)
T ss_pred             hHHHHHHHHHHHc-CHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH-----------HHHHHHHhH
Confidence            3344455556554 3333333     6778888888888999999999999999876532           44433 333


Q ss_pred             chHHHHHHhhc--------CCCHHHHHHHHHHHHHhcCCC
Q 043116          421 EGLEKIENLQS--------HDNNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       421 ~~~~~l~~l~~--------~~~~~v~~~a~~~l~~~~~~~  452 (482)
                      ..+..+.+...        +++..|+..|..++.-+|.++
T Consensus        82 ~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~~~  121 (122)
T cd03572          82 AQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFSYS  121 (122)
T ss_pred             HHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhccC
Confidence            55666666643        346789999999999998875

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=91.57  E-value=9.2  Score=39.10  Aligned_cols=164  Identities=14%  Similarity=0.154  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHhccC----ChhHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhh----CCCChhhHHHHHHHHh
Q 043116          196 RPALRVLAQLIRSN----DEKVLTDACRALAYLAD---GTNDKIQAVIEAGVCPRLVKLL----GHRSRLVLTAALRTIG  264 (482)
Q Consensus       196 ~~~~~~L~~ll~~~----~~~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll----~~~~~~v~~~a~~~L~  264 (482)
                      ...+..+..++.++    ++.++..++.+++.+..   .............+++.+...+    +..+...+...+++|+
T Consensus       392 ~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  471 (574)
T smart00638      392 EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALG  471 (574)
T ss_pred             HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhh
Confidence            45666667777643    45677777777776662   1111100011123445555444    3455566777899999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhc--CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChhH
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLI--HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DAEFGT  340 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~~  340 (482)
                      |+..  +.         .++.+...+.  ...+..+|..|+|+|..++...+..        +-+.+++++.  ..++++
T Consensus       472 N~g~--~~---------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~l~~i~~n~~e~~Ev  532 (574)
T smart00638      472 NAGH--PS---------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEVLLPIYLNRAEPPEV  532 (574)
T ss_pred             ccCC--hh---------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHHHHHHHcCCCCChHH
Confidence            9865  22         2233344443  2225689999999999987644553        3444555655  467889


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHH
Q 043116          341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLI  389 (482)
Q Consensus       341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~  389 (482)
                      |..|..+|...--  +..         .+..+...+. +++.+|...+..
T Consensus       533 RiaA~~~lm~t~P--~~~---------~l~~ia~~l~~E~~~QV~sfv~S  571 (574)
T smart00638      533 RMAAVLVLMETKP--SVA---------LLQRIAELLNKEPNLQVASFVYS  571 (574)
T ss_pred             HHHHHHHHHhcCC--CHH---------HHHHHHHHHhhcCcHHHHHHhHH
Confidence            9888877664421  222         2444444444 455566655443

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.49  E-value=19  Score=37.15  Aligned_cols=304  Identities=13%  Similarity=0.064  Sum_probs=160.5

Q ss_pred             CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHH--hCCh
Q 043116           81 REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLS--QGAL  157 (482)
Q Consensus        81 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i  157 (482)
                      .++..-+|+..+|.++.-..  .++...... -+-..+++++++. |..++-.++.++.....+-.-..+.+..  ....
T Consensus       497 ~~~~RiiRRRVa~ilg~Wvs--vq~~~e~k~-l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf  573 (978)
T KOG1993|consen  497 HGNSRIIRRRVAWILGQWVS--VQQKLELKP-LLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLF  573 (978)
T ss_pred             ccchhHHHHHHHHHHhhhhh--eechHhHHH-HHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHH
Confidence            34434578889999998765  222221111 1346778888876 6667778888888777433222222221  1234


Q ss_pred             HHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc--cCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116          158 IPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR--SNDEKVLTDACRALAYLADGTNDKIQAV  235 (482)
Q Consensus       158 ~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~~~~~~~~~  235 (482)
                      ..+..++..-+..+.+-..+.+++.+..............+++.+-.+=.  .+.+-.+...+.+|.++...-......+
T Consensus       574 ~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~  653 (978)
T KOG1993|consen  574 VLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEF  653 (978)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccc
Confidence            44555565555667777788888877765322221222223332222222  3456677888888888874311111101


Q ss_pred             HHhCcHHHHHHhhCCC-Chh---hHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          236 IEAGVCPRLVKLLGHR-SRL---VLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       236 ~~~~~l~~L~~ll~~~-~~~---v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      .  .++-..+.+-.++ +|+   ..+.+...-.....+.+.....+.  +++|.+..+++.. .... ..+..++.....
T Consensus       654 ~--~fL~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~ll--~L~p~l~~~iE~s-te~L-~t~l~Ii~sYil  727 (978)
T KOG1993|consen  654 Y--PFLYPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPELL--LLFPHLLYIIEQS-TENL-PTVLMIISSYIL  727 (978)
T ss_pred             h--HHHHHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHHH--HHHHHHHHHHHhh-hhhH-HHHHHHHHHHHh
Confidence            0  1222333333332 222   333343333333333333323232  4677788777665 4333 344445544443


Q ss_pred             -CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC--CCCCHHHHHHHH
Q 043116          312 -GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL--PCPDPQIVTVCL  388 (482)
Q Consensus       312 -~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~~l  388 (482)
                       .++...+ -...|++..+.+++.+-..+-....+..+..+... + .-...+...++++.+..-.  +.+.|.+.-.-+
T Consensus       728 Ld~~~fl~-~y~~~i~k~~~~~l~dvr~egl~avLkiveili~t-~-~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl  804 (978)
T KOG1993|consen  728 LDNTVFLN-DYAFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKT-N-PILGSLLFSPLLSRLFLSIAENDKYPYVMGEYL  804 (978)
T ss_pred             hccHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh-h-HHHHhhhcchhhHHHHHHHHhCCCCchhHHHHH
Confidence             4444332 23357888999998876667777777888877763 2 3444445566666665533  345555555555


Q ss_pred             HHHHHHHH
Q 043116          389 IGLENILK  396 (482)
Q Consensus       389 ~~L~~l~~  396 (482)
                      .++.++.-
T Consensus       805 ~vvaRi~l  812 (978)
T KOG1993|consen  805 LVVARISL  812 (978)
T ss_pred             HHHHHHHh
Confidence            55555543

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.10  E-value=0.85  Score=36.56  Aligned_cols=75  Identities=11%  Similarity=0.076  Sum_probs=61.8

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      ..++..|.+.+++.++.++..|+..|..+....+.....++.+.+++..|+.++.....+.++..++..+...+.
T Consensus        40 k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          40 KYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            347888899999999999999999999998876555567777889999999999754448899999888887764

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.88  E-value=3.5  Score=32.63  Aligned_cols=76  Identities=8%  Similarity=-0.066  Sum_probs=62.6

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC---CCHHHHHHHHHHHHHHHHhchh
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC---PDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      ++..|..-+.++++.++..|+..|-.++.++.+.+...+....++..|..++..   .++.|+.+++..+.........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            566677778889999999999999999999888787777777788889998875   4678999999998888765443

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=90.80  E-value=0.97  Score=36.31  Aligned_cols=74  Identities=15%  Similarity=0.145  Sum_probs=62.8

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..|.+.+++.++.++..|+..|-.+....+.....++.+.+++..|+.++.....+.++..++..+...+.
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            46888889999999999999999999999877556667778889999999999884338999999988888764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.68  E-value=23  Score=36.70  Aligned_cols=279  Identities=11%  Similarity=0.072  Sum_probs=123.9

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHH----H---HHHhhcCCCChHHHHHHHHHH
Q 043116           23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVP----R---FVEFLMREDYPQLQFEAARAL   95 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~----~---L~~ll~~~~~~~v~~~a~~~L   95 (482)
                      ...+..+|.+++.+.++...+.-.|+.++.++.....+.+....-...+.|    .   ++..++.+. ..--+..++++
T Consensus       494 ~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~~~if~~~~iap~~~~ll~nLf~a~s~p~-~~EneylmKaI  572 (960)
T KOG1992|consen  494 EHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSNAKIFGAEDIAPFVEILLTNLFKALSLPG-KAENEYLMKAI  572 (960)
T ss_pred             HHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCccccccchhhcchHHHHHHHHHHHhccCCc-ccccHHHHHHH
Confidence            345567999999999999999999999999998764332222222222332    1   222222332 11112222333


Q ss_pred             HHHhCCChHhHHHHHhCCChHHHHH----hhCCC-CHHHHHHH----HHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc
Q 043116           96 TNIASGTSENTKVAIDHGAVPIFVK----LLASP-SDDVREQA----VWALGNVAGDSSRCRDFVLSQGALIPLLAELNE  166 (482)
Q Consensus        96 ~~l~~~~~~~~~~~~~~g~i~~L~~----ll~~~-~~~~~~~a----~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~  166 (482)
                      -.+..-.++....... ..+..|.+    ..+++ +|..-...    .-++...|..++..-. -.+...+|.+-..+ .
T Consensus       573 mRii~i~~~~i~p~~~-~~l~~Lteiv~~v~KNPs~P~fnHYLFEsi~~li~~t~~~~~~~vs-~~e~aL~p~fq~Il-~  649 (960)
T KOG1992|consen  573 MRIISILQSAIIPHAP-ELLRQLTEIVEEVSKNPSNPQFNHYLFESIGLLIRKTCKANPSAVS-SLEEALFPVFQTIL-S  649 (960)
T ss_pred             HHHHHhCHHhhhhhhh-HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHhccCchHHH-HHHHHHHHHHHHHH-H
Confidence            3322212222100000 12233333    33443 33333322    2333333333333222 22333555555555 4


Q ss_pred             hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCCh---hHHHHHHHHHHHhccCCcHHHHHHH-HhCcHH
Q 043116          167 HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDE---KVLTDACRALAYLADGTNDKIQAVI-EAGVCP  242 (482)
Q Consensus       167 ~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~---~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~l~  242 (482)
                      .+=.+..-++...++.+..............++|.   +++..-+   .-.-.+.+.+..+....+......- -.+++.
T Consensus       650 eDI~EfiPYvfQlla~lve~~~~~ip~~~~~l~~~---lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLG  726 (960)
T KOG1992|consen  650 EDIQEFIPYVFQLLAVLVEHSSGTIPDSYSPLFPP---LLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILG  726 (960)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHH---hcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHH
Confidence            44456667788888887776543222222233332   2221111   1122233333333333332221111 124555


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT  310 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~  310 (482)
                      .+-+++.++..+  ......|.++...-+...-.-.-.++.-.+.+.++.+..++..+...-.++-++
T Consensus       727 ifqkLiaSka~D--h~GF~LLn~i~~~~~~~~~~py~k~i~~llf~RlqnskT~kf~k~~~vF~~~~~  792 (960)
T KOG1992|consen  727 IFQKLIASKAND--HHGFYLLNTIIESIPPNELAPYMKQIFGLLFQRLQNSKTEKFVKSFIVFFSLFT  792 (960)
T ss_pred             HHHHHhcCcccc--hhHHHHHHHHHhcCCHhhhhHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            555666544322  345556665655433221111112455667777776645554444444444333

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=90.18  E-value=4.6  Score=32.00  Aligned_cols=74  Identities=8%  Similarity=-0.012  Sum_probs=60.8

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH--HHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP--QIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~--~v~~~~l~~L~~l~~~~  398 (482)
                      ++..|..-+.++++.++..|+..|..++.++...+...+.+.++++.|..++..+..  .|+.+++..+.......
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f  113 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF  113 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            455667777889999999999999999999888888888888999999998886443  38988888888876543

Unpublished observations. Domain of unknown function.

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=90.16  E-value=13  Score=32.99  Aligned_cols=124  Identities=19%  Similarity=0.288  Sum_probs=74.9

Q ss_pred             ccchhchhhhhhhccHHHHHHHhc-----------CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC
Q 043116           14 SAPALSLNLQSKFEILPTMVAGVW-----------SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE   82 (482)
Q Consensus        14 ~~~~~~~~~~~~~~~i~~l~~~l~-----------s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~   82 (482)
                      +.+.....+.+....+|.|++.|.           +++....+.|+..|..+-..            ..++.++++++.+
T Consensus        18 P~~al~~A~~~~e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~re~------------~A~~~li~l~~~~   85 (249)
T PF06685_consen   18 PREALEAAIEQREEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQFREE------------RALPPLIRLFSQD   85 (249)
T ss_pred             cHHHHHHHHHCHHHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHHhhh------------hhHHHHHHHHcCC
Confidence            344444444444455666666664           12233455666666655322            2689999999876


Q ss_pred             CCh-------HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHH
Q 043116           83 DYP-------QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLS  153 (482)
Q Consensus        83 ~~~-------~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~  153 (482)
                      +..       -+-+...+++..++.            |-++.|.+++.+++  .-+|..|+.+|..+....+..|+.+.+
T Consensus        86 ~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~  153 (249)
T PF06685_consen   86 DDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVIQ  153 (249)
T ss_pred             cchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            621       122223333333333            66788888887654  568899999999999888777777655


Q ss_pred             hCChHHHHHH
Q 043116          154 QGALIPLLAE  163 (482)
Q Consensus       154 ~~~i~~l~~~  163 (482)
                        .+..++..
T Consensus       154 --~f~~ll~~  161 (249)
T PF06685_consen  154 --YFRELLNY  161 (249)
T ss_pred             --HHHHHHHH
Confidence              34444444

The function of this family is unknown.

>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor

Probab=90.10  E-value=9.2  Score=39.59  Aligned_cols=159  Identities=16%  Similarity=0.206  Sum_probs=111.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      ..|..|+..+.|.+..+...+-..+....... .+..       ++..|+.+.-+..+    ..++.+|..+-.  |.-+
T Consensus         4 ~~~~~l~~~l~s~~~~~~~~~~~~~~~~~~~~-~~~~-------l~~~l~~y~~~t~s----~~~~~il~~~~~--P~~K   69 (668)
T PF04388_consen    4 ASITELLSLLESNDLSVLEEIKALLQELLNSD-REPW-------LVNGLVDYYLSTNS----QRALEILVGVQE--PHDK   69 (668)
T ss_pred             ccHHHHHHHhcCCchhhHHHHHHHHHHHhhcc-chHH-------HHHHHHHHHhhcCc----HHHHHHHHhcCC--ccHH
Confidence            45788999999999888888888887777664 2221       36667776444442    446667776632  3211


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                            .++..|-+.+..  +.-|..++..|+.+....|..--.+.+...+..|+..|..+.+..+...|+.+|..|.-.
T Consensus        70 ------~~~~~l~~~~~~--~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~  141 (668)
T PF04388_consen   70 ------HLFDKLNDYFVK--PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPH  141 (668)
T ss_pred             ------HHHHHHHHHHcC--chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhcc
Confidence                  234556666654  467778999999999877777777888899999999998888888888899999888876


Q ss_pred             CCCCChhhhhhHHHHHHHHhc
Q 043116          187 KPQPPFNQIRPALRVLAQLIR  207 (482)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~ll~  207 (482)
                      -+..-......++.....++.
T Consensus       142 ip~~l~~~L~~Lf~If~Rl~~  162 (668)
T PF04388_consen  142 IPSSLGPHLPDLFNIFGRLLS  162 (668)
T ss_pred             ccchhhHHHHHHHHHHHHHHH
Confidence            655444445556665555553

The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.04  E-value=4.9  Score=34.35  Aligned_cols=137  Identities=7%  Similarity=0.115  Sum_probs=89.7

Q ss_pred             HHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHH
Q 043116          258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH----NHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNL  332 (482)
Q Consensus       258 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~l  332 (482)
                      .|+..|.-++ ..++....++++.+--.+...|..    .....+|..+.+.++.+.. +++..+..+....++|..+++
T Consensus       119 naL~lLQcla-ShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI  197 (315)
T COG5209         119 NALNLLQCLA-SHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI  197 (315)
T ss_pred             HHHHHHHHHh-cCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence            3444444444 467666767777654444444432    2245688889999999998 677777888889999999999


Q ss_pred             HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH--------cCChHHHHh-cCCCCCHHHHHHHHHHHHHHHHh
Q 043116          333 LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR--------EGCVKPLCD-LLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       333 l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ++.++.--+.-++..+..+..+.  ...+++.+        ..++..++. +.+.+...+.+.++.+.-++...
T Consensus       198 me~gSElSktvaifI~qkil~dD--vGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         198 MELGSELSKTVAIFIFQKILGDD--VGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHhhhHHHHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC
Confidence            99888777777888888776632  22222221        123333333 44556677888777777666543

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=89.41  E-value=1.5  Score=34.75  Aligned_cols=74  Identities=11%  Similarity=0.051  Sum_probs=60.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChH-HHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-LQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~-v~~~a~~~L~~l~~  100 (482)
                      .++..|.+.+++.++.++..|+..|-.+....+.....++.+.+++..|..+++...... ++..++..+...+.
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            367888888999999999999999999998765555677778889999999988765334 88888888777654

Unpublished observations. Domain of unknown function.

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=89.35  E-value=12  Score=31.62  Aligned_cols=146  Identities=16%  Similarity=0.125  Sum_probs=90.0

Q ss_pred             ChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHH
Q 043116          156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV  235 (482)
Q Consensus       156 ~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~  235 (482)
                      .++.+++.. -+.+..++..|+.++..+.+.+=..+    ..++|.++.+..++++.++..|...+..+.+..+.....-
T Consensus         9 yl~~Il~~~-~~~~~~vr~~Al~~l~~il~qGLvnP----~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~~~   83 (187)
T PF12830_consen    9 YLKNILELC-LSSDDSVRLAALQVLELILRQGLVNP----KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVESR   83 (187)
T ss_pred             HHHHHHHHH-hCCCHHHHHHHHHHHHHHHhcCCCCh----HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            355677766 67788899999999999888761111    4689999999999999999999999999987666544433


Q ss_pred             HHhCcHHHHH--HhhCCCCh-hh---HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-------chhHHHHH
Q 043116          236 IEAGVCPRLV--KLLGHRSR-LV---LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-------NKSIKKEV  302 (482)
Q Consensus       236 ~~~~~l~~L~--~ll~~~~~-~v---~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-------~~~v~~~a  302 (482)
                      +..|+-...-  ..+..+.. ..   ...-+..+..+...+....+.     ++..+++.+....       .+.-....
T Consensus        84 ~~~gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~-----Fl~~l~k~f~~~~~~~~~~~~~~~l~~~  158 (187)
T PF12830_consen   84 YSEGIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRK-----FLKSLLKQFDFDLTKLSSESSPSDLDFL  158 (187)
T ss_pred             HHHHHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHH-----HHHHHHHHHHhhccccccccchhHHHHH
Confidence            3333222111  11211111 11   444556666666655554443     3445555554431       23344556


Q ss_pred             HHHHHHHhc
Q 043116          303 CWIISNITA  311 (482)
Q Consensus       303 ~~~L~nl~~  311 (482)
                      .++.-|++.
T Consensus       159 ~Fla~nLA~  167 (187)
T PF12830_consen  159 LFLAENLAT  167 (187)
T ss_pred             HHHHHHHhc
Confidence            666666665

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.12  E-value=2.4  Score=33.61  Aligned_cols=74  Identities=15%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC--CChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE--DYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..|.+.++++++.++..|+..|-.+....+......+....++..++.++...  ..+.++..++..+...+.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            36888889999999999999999999999877444555666668888899999763  337899999988888765

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=88.66  E-value=34  Score=35.87  Aligned_cols=94  Identities=16%  Similarity=0.086  Sum_probs=54.3

Q ss_pred             CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHH--H-HHHHHHhcCCHHHHHHHHHcCChH
Q 043116          251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEV--C-WIISNITAGNREQIQAVIDAGLIG  327 (482)
Q Consensus       251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a--~-~~L~nl~~~~~~~~~~l~~~~~i~  327 (482)
                      .+++++..|+.+|.|+.+..+......        +..+..+..++.....+  - ..|-+..   ...+..+-..++|.
T Consensus       674 ~Dpei~~~AL~vIincVc~pp~~r~s~--------i~~v~S~~g~~r~~l~~~~ks~~le~~l---~~mw~~Vr~ndGIk  742 (1516)
T KOG1832|consen  674 VDPEIIQPALNVIINCVCPPPTTRPST--------IVAVGSQSGDRRIFLGAGTKSAKLEQVL---RQMWEAVRGNDGIK  742 (1516)
T ss_pred             cCHHHHHHHHhhhheeecCCCCcchhh--------hhhccccCCCccccccCCCchHHHHHHH---HHHHHHHhcCccHH
Confidence            378999999999999998665443322        22222221122111000  0 0111111   12223333577899


Q ss_pred             HHHHHHhcCC-----hhHHHHHHHHHHHhhcCC
Q 043116          328 PIVNLLQDAE-----FGTKKEAAWVISNATSGG  355 (482)
Q Consensus       328 ~L~~ll~~~~-----~~~~~~a~~aL~~l~~~~  355 (482)
                      .|+.+++...     ..+|..|+.+|.-++...
T Consensus       743 iLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~  775 (1516)
T KOG1832|consen  743 ILLKLLQYKNPPTTADCIRALACRVLLGLARDD  775 (1516)
T ss_pred             HHHHHHhccCCCCcHHHHHHHHHHHHhccccCc
Confidence            9999998543     458888999999998843

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=88.62  E-value=23  Score=33.84  Aligned_cols=180  Identities=15%  Similarity=0.151  Sum_probs=100.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCc-HHHHHhcCCHHHHHHhhc----C------CCChHHHHHHHHHHHHHhCCChHhH
Q 043116           38 SDDNKVQLEATTLFRKMLSFDRNSP-IEKVIQSGVVPRFVEFLM----R------EDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        38 s~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~~g~~~~L~~ll~----~------~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      +.+.+-+..|-..|.+......+.+ ...+.+  -++.+.+.++    +      +.+.++-.+|+++|+.+.. +++..
T Consensus         4 ~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~--k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~-~~~i~   80 (372)
T PF12231_consen    4 GSDRSSRLDAYMTLNNALKAYDNLPDRQALQD--KMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLY-HPEIV   80 (372)
T ss_pred             cCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHH--HHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHc-cHHHH
Confidence            4455566677666776666543222 222221  2344444332    2      1126788999999999987 56655


Q ss_pred             HHHHhCC---ChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---c-hhhhhHHHHHH
Q 043116          107 KVAIDHG---AVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---E-HAKLSMLRTAT  177 (482)
Q Consensus       107 ~~~~~~g---~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~-~~~~~~~~~a~  177 (482)
                      ..+-+.-   ++...+..+.+  .+..+...++|+|..=-...     .++....+..++..+.   + -.+..+....+
T Consensus        81 ~~l~~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~-----~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL  155 (372)
T PF12231_consen   81 STLSDDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSP-----KIMTSDRVERLLAALHNIKNRFPSKSIISERL  155 (372)
T ss_pred             hhCChHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCC-----cccchhhHHHHHHHHHHhhccCCchhHHHHHH
Confidence            4443322   23444555543  34567777777777543221     1223334444544442   2 34567788888


Q ss_pred             HHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc
Q 043116          178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA  225 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~  225 (482)
                      .++.++....|..-......=+|.++..+-+....++..+..++..+.
T Consensus       156 ~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~  203 (372)
T PF12231_consen  156 NIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAK  203 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHH
Confidence            999999887654433333434566666555666667776666555443

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.60  E-value=25  Score=38.76  Aligned_cols=98  Identities=17%  Similarity=0.150  Sum_probs=63.4

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---hh---hhhHHHHHHHHHHHhhcCC-CCCChhhhh
Q 043116          124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---HA---KLSMLRTATWTLSNFCRGK-PQPPFNQIR  196 (482)
Q Consensus       124 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---~~---~~~~~~~a~~~L~~L~~~~-~~~~~~~~~  196 (482)
                      .+..+++...+.++.++....-+   .+.. | .+.+++++..   ..   ...+.+.+..+|.-++.+. +........
T Consensus       853 ~~~~evr~~sl~~l~silet~ge---~ll~-~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~  927 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVGE---HLLH-G-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL  927 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccch---hhcc-c-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Confidence            45566777777888888743321   1221 2 4445555421   11   3467777888888888776 666667778


Q ss_pred             hHHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Q 043116          197 PALRVLAQLIR-SNDEKVLTDACRALAYLAD  226 (482)
Q Consensus       197 ~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~  226 (482)
                      +++..+..+-+ ..|..+--.++..++++++
T Consensus       928 ~lidtl~~fs~QktdlNISltAi~lfWtvsD  958 (1610)
T KOG1848|consen  928 DLIDTLLVFSRQKTDLNISLTAIGLFWTVSD  958 (1610)
T ss_pred             HHHHHHHHHHhhhccccccHHHHHHHHHHHH
Confidence            88888888765 4567777777777777764

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.47  E-value=1.4  Score=38.06  Aligned_cols=84  Identities=13%  Similarity=0.203  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcC-------CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH-HHHHhCC
Q 043116           42 KVQLEATTLFRKMLSFDRNSPIEKVIQSG-------VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT-KVAIDHG  113 (482)
Q Consensus        42 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g-------~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g  113 (482)
                      +-|..|+.+|++++-.++  +++.++..+       ++..|++++....++-.|+-|+-.|.+++..+.... ....+.+
T Consensus       139 SPqrlaLEaLcKLsV~e~--NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~  216 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIEN--NVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP  216 (257)
T ss_pred             CHHHHHHHHHHHhheecc--CcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence            568899999999997743  344444333       556677777776658899999999999999776665 4555778


Q ss_pred             ChHHHHHhhCCCCH
Q 043116          114 AVPIFVKLLASPSD  127 (482)
Q Consensus       114 ~i~~L~~ll~~~~~  127 (482)
                      .+..|+.++.+...
T Consensus       217 ~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  217 CISHLIAFIEDAEQ  230 (257)
T ss_pred             hHHHHHHHHHHHHH
Confidence            89999999975443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=88.41  E-value=13  Score=37.07  Aligned_cols=223  Identities=13%  Similarity=0.006  Sum_probs=121.7

Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC--C---------CChhhHHHHHHHHhHhhcCChhhHHH
Q 043116          208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG--H---------RSRLVLTAALRTIGNIVTGDDFQTQC  276 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~---------~~~~v~~~a~~~L~~l~~~~~~~~~~  276 (482)
                      +++.++...+-..|..+...-+       +..++..|..+..  .         -++.++...+..|..=.   ...   
T Consensus       248 d~~~~V~~~ae~~LKr~~~~~e-------d~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~---~Aa---  314 (501)
T PF13001_consen  248 DSNSSVSDRAEDLLKRLSVSLE-------DPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSV---IAA---  314 (501)
T ss_pred             CCcchHHHHHHHHHhhcCCCCC-------CHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhH---HHH---
Confidence            3456666666666766664311       1234455555443  1         24456666555554311   100   


Q ss_pred             HHhcCchHHHHHHhcCC-CchhHHHHHHHHH---HHHhcC-CHHHH---HHHHHcCChHHHHH----HHhcCChhHHHHH
Q 043116          277 IINCGALRYLLGLLIHN-HNKSIKKEVCWII---SNITAG-NREQI---QAVIDAGLIGPIVN----LLQDAEFGTKKEA  344 (482)
Q Consensus       277 l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L---~nl~~~-~~~~~---~~l~~~~~i~~L~~----ll~~~~~~~~~~a  344 (482)
                      -.-...+..+..-+.+. .+.++|..+...+   .....+ .+...   ...+..++.+.+-.    -....+...|..+
T Consensus       315 ~~~~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~a  394 (501)
T PF13001_consen  315 TSFPNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLA  394 (501)
T ss_pred             hCCccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHH
Confidence            00012222333333332 1456776776666   555543 33333   33334555555510    0123567899999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      ..+|+.++.... ...  ..+-+.+..|.+-+..++++++..+-++|..+..........         ...-.......
T Consensus       395 Ye~lG~L~~~~p-~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~---------~~~~~~~~~~~  462 (501)
T PF13001_consen  395 YETLGLLAKRAP-SLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDD---------EDEQKRLLLEL  462 (501)
T ss_pred             HHHHHHHHccCc-ccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccc---------hhHHHHHHHHH
Confidence            999999998643 321  123457888888888899999999999999998654432110         00000111112


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      .+.....+....++-.|.+-.+.+|+.++.+
T Consensus       463 l~~~~~~~~~~~~R~~avk~an~~fpf~d~~  493 (501)
T PF13001_consen  463 LLLSYIQSEVRSCRYAAVKYANACFPFSDVP  493 (501)
T ss_pred             HHHhhccchhHHHHHHHHHHHHHhCCccchH
Confidence            2333344566778899999999999988764

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=88.29  E-value=2  Score=34.17  Aligned_cols=73  Identities=10%  Similarity=0.059  Sum_probs=60.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR------EDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..+.+.+++.++.++..|+..|-.+....+.....++.+.+++.-+++++..      .+ +.|+...+..+...+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTS-EKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCC-HHHHHHHHHHHHHHHH
Confidence            4688889999999999999999999999887655566777788899999999963      34 7899988888777654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=88.12  E-value=2.5  Score=33.83  Aligned_cols=74  Identities=8%  Similarity=0.007  Sum_probs=59.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHH---HHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQ---IVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~---v~~~~l~~L~~l~~~~  398 (482)
                      ++..|..-+.++++.++..|+..|-.++.++.+.+...+....+++.|..++.. ....   |+.+++..+.......
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            455677777889999999999999999998877777777777888889987764 3333   8888888888776554

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=87.74  E-value=37  Score=35.14  Aligned_cols=199  Identities=14%  Similarity=0.115  Sum_probs=101.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcch---hhhhHHHHHHHHHHHhhcCC--
Q 043116          114 AVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEH---AKLSMLRTATWTLSNFCRGK--  187 (482)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~~~--  187 (482)
                      .+..+.+++.+....-.+ +...|..+.... ....+      .+..+..++...   .+..+...|+.+++.+....  
T Consensus       396 av~~i~~~I~~~~~~~~e-a~~~l~~l~~~~~~Pt~e------~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~  468 (618)
T PF01347_consen  396 AVKFIKDLIKSKKLTDDE-AAQLLASLPFHVRRPTEE------LLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCV  468 (618)
T ss_dssp             HHHHHHHHHHTT-S-HHH-HHHHHHHHHHT-----HH------HHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCCCHHH-HHHHHHHHHhhcCCCCHH------HHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceee
Confidence            355666666654332222 344444443222 11122      234455555321   23445555665665555422  


Q ss_pred             C--------CCChhhhhhHHHH----HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC---C
Q 043116          188 P--------QPPFNQIRPALRV----LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR---S  252 (482)
Q Consensus       188 ~--------~~~~~~~~~~~~~----L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~  252 (482)
                      .        .........+++.    +.......+.+-+..++.+|+|+...           ..++.+.+++...   +
T Consensus       469 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~  537 (618)
T PF01347_consen  469 NSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVP  537 (618)
T ss_dssp             T-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-
T ss_pred             cccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccc
Confidence            0        1122222333444    44444566778899999999998732           2467788887665   5


Q ss_pred             hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHH
Q 043116          253 RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVN  331 (482)
Q Consensus       253 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~  331 (482)
                      ..+|..|+++|..++...+...        .+.++.++.+ .++.++|..|...|... ..+..         .+..+..
T Consensus       538 ~~~R~~Ai~Alr~~~~~~~~~v--------~~~l~~I~~n~~e~~EvRiaA~~~lm~~-~P~~~---------~l~~i~~  599 (618)
T PF01347_consen  538 HFIRVAAIQALRRLAKHCPEKV--------REILLPIFMNTTEDPEVRIAAYLILMRC-NPSPS---------VLQRIAQ  599 (618)
T ss_dssp             HHHHHHHHHTTTTGGGT-HHHH--------HHHHHHHHH-TTS-HHHHHHHHHHHHHT----HH---------HHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcCcHHH--------HHHHHHHhcCCCCChhHHHHHHHHHHhc-CCCHH---------HHHHHHH
Confidence            6799999999999877666543        3446666654 33678888887666543 22222         3344445


Q ss_pred             HHh-cCChhHHHHHHHHH
Q 043116          332 LLQ-DAEFGTKKEAAWVI  348 (482)
Q Consensus       332 ll~-~~~~~~~~~a~~aL  348 (482)
                      .+. +++.+|...+...|
T Consensus       600 ~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  600 SLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHTT-S-HHHHHHHHHHH
T ss_pred             HHhhCchHHHHHHHHHhc
Confidence            554 45566666555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=87.73  E-value=9.9  Score=34.71  Aligned_cols=138  Identities=14%  Similarity=0.188  Sum_probs=75.0

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH-HHHHhCCChHHHHH----hhC--------CCCHHHHHHHHHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT-KVAIDHGAVPIFVK----LLA--------SPSDDVREQAVWAL  137 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~----ll~--------~~~~~~~~~a~~~L  137 (482)
                      ++|.++.++++.+ +.++..++.+|..+....+... ..+...|..+.+-+    ++.        .+...+...+.-++
T Consensus       120 iiP~iL~llDD~~-~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYS-PEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCC-HHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            6899999999998 9999999999999987444333 33666776554443    443        34455666777777


Q ss_pred             HHhhCC---C-hhhHHHHHHhCChHHHHHHHcchhh---hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC
Q 043116          138 GNVAGD---S-SRCRDFVLSQGALIPLLAELNEHAK---LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN  209 (482)
Q Consensus       138 ~~l~~~---~-~~~~~~~~~~~~i~~l~~~l~~~~~---~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~  209 (482)
                      ..++..   . ...+......-+-..++.-+....+   +.+....+..+..+...-..........+++.+.+.+.++
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            777421   1 1111111111111113333322222   4555555555555554422223333456666666655543

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=87.59  E-value=7  Score=35.38  Aligned_cols=177  Identities=14%  Similarity=0.128  Sum_probs=99.3

Q ss_pred             HHHHHHHhhcCCCCCCh--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhC--cHHHHHHhhC--
Q 043116          176 ATWTLSNFCRGKPQPPF--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAG--VCPRLVKLLG--  249 (482)
Q Consensus       176 a~~~L~~L~~~~~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~--~l~~L~~ll~--  249 (482)
                      -...|..+.........  .........+...+....++.+-.++..++-++.+.+. ...+...+  ....+..++.  
T Consensus        40 el~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~  118 (268)
T PF08324_consen   40 ELESLESLLSALKSTSAYHSDLSAWLILLLKILLSWPPESRFPALDLLRLAALHPPA-SDLLASEDSGIADLLSTLISSG  118 (268)
T ss_dssp             HHHHHHHHHCCCCCC-SS---HHHHHHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCH-HHHHHSTTTH-HHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCCCccccchhHHHHHHHHHHHhCCCccchhHHhHHHHHHhCccH-HHHHhccccchHHHHHHHHHhc
Confidence            33445555554322111  12445566677777777777889999999888765443 23333322  2333443332  


Q ss_pred             --CCChhhHHHHHHHHhHhhcCChhhHHHHHhc-C-chHHHHHHhcCCC---chhHHHHHHHHHHHHhcCCHHHH-HHHH
Q 043116          250 --HRSRLVLTAALRTIGNIVTGDDFQTQCIINC-G-ALRYLLGLLIHNH---NKSIKKEVCWIISNITAGNREQI-QAVI  321 (482)
Q Consensus       250 --~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~-~i~~L~~ll~~~~---~~~v~~~a~~~L~nl~~~~~~~~-~~l~  321 (482)
                        ...+..+.-+++++.|+..+.... ..+... + .+...+..+....   +..++..++..+.|++....... ..-.
T Consensus       119 ~~~~~~~~~ml~lR~l~NlF~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~  197 (268)
T PF08324_consen  119 SSSSPPANQMLALRLLANLFSHPPGR-QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEW  197 (268)
T ss_dssp             TTTSSHHHHHHHHHHHHHHTTSCCCH-HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCH
T ss_pred             cCCCcHHHHHHHHHHHHHhhCCCccH-HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHH
Confidence              245678888999999999855443 334332 2 2333333333331   67899999999999975110100 0001


Q ss_pred             HcCChHHHHHHHh--cCChhHHHHHHHHHHHhhcC
Q 043116          322 DAGLIGPIVNLLQ--DAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       322 ~~~~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~  354 (482)
                      ...++..+.+.+.  ..+++....++.|++++...
T Consensus       198 ~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~  232 (268)
T PF08324_consen  198 QSELLSSIIEVLSREESDEEALYRLLVALGTLLSS  232 (268)
T ss_dssp             HHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc
Confidence            1113455555333  36899999999999999964

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=87.50  E-value=27  Score=33.29  Aligned_cols=145  Identities=10%  Similarity=0.129  Sum_probs=78.9

Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh---cCChhHHHHHHHHHHHhhcCCCHH-
Q 043116          283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ---DAEFGTKKEAAWVISNATSGGTHE-  358 (482)
Q Consensus       283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~---~~~~~~~~~a~~aL~~l~~~~~~~-  358 (482)
                      .+.+-.-++..+...-|..|+..+..++....+....++. +.+..++.-..   +.++.-+..|+..++.++..+... 
T Consensus       212 ~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~v~~i~~-~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~  290 (370)
T PF08506_consen  212 EEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQVTSILM-QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTK  290 (370)
T ss_dssp             HHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BT
T ss_pred             HHHHHhhccccccCCcHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhcccc
Confidence            3334444443323456677888888887643333333322 13333332211   346778888999999998865211 


Q ss_pred             ----------HHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHH
Q 043116          359 ----------QIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN  428 (482)
Q Consensus       359 ----------~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~  428 (482)
                                ....+....+++.|. --.+..|-++..|++.+..+-..-+              .+.  -.+.++.+.+
T Consensus       291 ~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~--------------~~~--l~~~~~~l~~  353 (370)
T PF08506_consen  291 SGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP--------------KEQ--LLQIFPLLVN  353 (370)
T ss_dssp             TB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS---------------HHH--HHHHHHHHHH
T ss_pred             CCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC--------------HHH--HHHHHHHHHH
Confidence                      234455556677666 2223445566666666555532211              222  2346788999


Q ss_pred             hhcCCCHHHHHHHHHHH
Q 043116          429 LQSHDNNDIHEMSVKIL  445 (482)
Q Consensus       429 l~~~~~~~v~~~a~~~l  445 (482)
                      .+.+++.-|+..|...|
T Consensus       354 ~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  354 HLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HTTSS-HHHHHHHHHHH
T ss_pred             HhCCCCcchhhhhhhhC
Confidence            99999999999887654

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []

Probab=87.43  E-value=23  Score=32.72  Aligned_cols=174  Identities=13%  Similarity=0.123  Sum_probs=102.0

Q ss_pred             ChhhHHHHHHHHhHhhcCChhhHHHHHhc-----------CchHHHHHHhc------CCCchhHHHHHHHHHHHHhcCCH
Q 043116          252 SRLVLTAALRTIGNIVTGDDFQTQCIINC-----------GALRYLLGLLI------HNHNKSIKKEVCWIISNITAGNR  314 (482)
Q Consensus       252 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-----------~~i~~L~~ll~------~~~~~~v~~~a~~~L~nl~~~~~  314 (482)
                      .-.+|..|+.|+..+..++++.+..+++.           .....+...|-      +. ++.-...|+.++..+..+++
T Consensus        51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~-dpy~~wfAa~il~hll~dn~  129 (312)
T PF04869_consen   51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSL-DPYRCWFAAVILMHLLRDNP  129 (312)
T ss_dssp             -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS--HHHHHHHHHHHHHHHTT-H
T ss_pred             chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccC-CHHHHHHHHHHHHHHHhcCH
Confidence            45689999999999999888776666522           11223554444      33 55556788999999988877


Q ss_pred             HHHHHHHHc--C----------ChHHHHHHHh-----cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcC-ChHHHHhcC
Q 043116          315 EQIQAVIDA--G----------LIGPIVNLLQ-----DAEFGTKKEAAWVISNATSGGTHEQIKHLVREG-CVKPLCDLL  376 (482)
Q Consensus       315 ~~~~~l~~~--~----------~i~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~-~l~~L~~ll  376 (482)
                      +.+..+..-  |          .++.+..+|.     ..++.++..-+..|+.+... ++.....++.++ .+..|++..
T Consensus       130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e-~p~AV~~FL~~~s~l~~Li~~~  208 (312)
T PF04869_consen  130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE-CPDAVNDFLSEGSNLQSLIEFS  208 (312)
T ss_dssp             HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT--HHHHHHHHCSTTHHHHHHHHH
T ss_pred             HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC-CHHHHHHHHcCcchHHHHHHHh
Confidence            765554431  1          2555555554     34677777777777777764 777777777764 688888864


Q ss_pred             C---CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHH-HHhchHHHHHHhhc
Q 043116          377 P---CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLV-EEAEGLEKIENLQS  431 (482)
Q Consensus       377 ~---~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~l~~l~~  431 (482)
                      .   +.+.-|+-.|.-.|+-.+++.......    ....+...+ .+.|.-..+..+..
T Consensus       209 ~~~~~~~~~VqGL~A~LLGicyef~~~~s~~----~R~~l~~ll~~riG~d~y~~kl~~  263 (312)
T PF04869_consen  209 NQSSSEDVLVQGLCAFLLGICYEFSTKDSPI----PRATLHPLLTKRIGRDNYFSKLEQ  263 (312)
T ss_dssp             S--TCCCHHHHHHHHHHHHHHHHT-S-SCCC-----HHHHHHHHHHHT-HHHHHHHHHC
T ss_pred             hcCCCCcchHHHHHHHHHHHHHHhcCCCCCc----CHHHHHHHHHHhcCHHHHHHHHHH
Confidence            3   234456666777888888776443321    123344444 45554444444433

p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=87.36  E-value=5.8  Score=29.32  Aligned_cols=70  Identities=17%  Similarity=0.197  Sum_probs=56.7

Q ss_pred             HcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 043116          365 REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI  444 (482)
Q Consensus       365 ~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~  444 (482)
                      ....+..|++-+..+.+.....++..+..+.+...             ....+...|+.+.+.++...-++..+.....+
T Consensus        28 ~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~~-------------a~~~l~~iG~~~fL~klr~~~~~~~~~~id~i   94 (98)
T PF14726_consen   28 ERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSPY-------------AAQILRDIGAVRFLSKLRPNVEPNLQAEIDEI   94 (98)
T ss_pred             HHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCcH-------------HHHHHHHccHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44567778888888888888899999999886432             27778899999999999988889988888887


Q ss_pred             HHH
Q 043116          445 LET  447 (482)
Q Consensus       445 l~~  447 (482)
                      ++.
T Consensus        95 l~~   97 (98)
T PF14726_consen   95 LDQ   97 (98)
T ss_pred             Hhc
Confidence            764

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=86.81  E-value=16  Score=30.12  Aligned_cols=116  Identities=17%  Similarity=0.200  Sum_probs=70.5

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC--ChHHHHHhhCCC-CHHHHHHHHHHHHHhh---CCC
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG--AVPIFVKLLASP-SDDVREQAVWALGNVA---GDS  144 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~~~-~~~~~~~a~~~L~~l~---~~~  144 (482)
                      .+..+..++++++ +.-|-.++..+...+..++  .+.+.+.+  .+..++..++.+ ++.+.+.++.++..+.   .+.
T Consensus        26 l~~ri~~LL~s~~-~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~  102 (165)
T PF08167_consen   26 LVTRINSLLQSKS-AYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGK  102 (165)
T ss_pred             HHHHHHHHhCCCC-hhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            4556788888888 7888888888888876431  23333333  467788888864 4667888888888776   444


Q ss_pred             hhhHHHHHHhCChHHHHHHHcchhh-hhHHHHHHHHHHHhhcCCCCC
Q 043116          145 SRCRDFVLSQGALIPLLAELNEHAK-LSMLRTATWTLSNFCRGKPQP  190 (482)
Q Consensus       145 ~~~~~~~~~~~~i~~l~~~l~~~~~-~~~~~~a~~~L~~L~~~~~~~  190 (482)
                      ++..+.+... .++.++..+..-.+ ......++.+|..+....|..
T Consensus       103 p~l~Rei~tp-~l~~~i~~ll~l~~~~~~~~~~l~~L~~ll~~~ptt  148 (165)
T PF08167_consen  103 PTLTREIATP-NLPKFIQSLLQLLQDSSCPETALDALATLLPHHPTT  148 (165)
T ss_pred             CchHHHHhhc-cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHCCcc
Confidence            5543333222 23433333322111 455666777777777655443

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=86.56  E-value=41  Score=34.44  Aligned_cols=161  Identities=17%  Similarity=0.206  Sum_probs=92.3

Q ss_pred             hHHHHHHHcch---hhhhHHHHHHHHHHHhhcC----CCCCChhhhhhHHHHHHHHhc----cCChhHHHHHHHHHHHhc
Q 043116          157 LIPLLAELNEH---AKLSMLRTATWTLSNFCRG----KPQPPFNQIRPALRVLAQLIR----SNDEKVLTDACRALAYLA  225 (482)
Q Consensus       157 i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~~----~~~~~~~~~~~~~~~L~~ll~----~~~~~~~~~~l~~L~~l~  225 (482)
                      +..+..++...   ....+...++.+++++...    .+..........++.+...+.    ..+.+.+...+.+|+|+.
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g  474 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAG  474 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccC
Confidence            45566666322   2334555566666666542    222112334556666666554    456667888999999988


Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhhC-C--CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHH
Q 043116          226 DGTNDKIQAVIEAGVCPRLVKLLG-H--RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKE  301 (482)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~L~~ll~-~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~  301 (482)
                      ....           +..+..++. +  .+..+|..|+++|..++...+...+        +.++.++.+ .+++++|..
T Consensus       475 ~~~~-----------i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~--------~~l~~i~~n~~e~~EvRia  535 (574)
T smart00638      475 HPSS-----------IKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQ--------EVLLPIYLNRAEPPEVRMA  535 (574)
T ss_pred             ChhH-----------HHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHH--------HHHHHHHcCCCCChHHHHH
Confidence            4322           344555553 2  3467999999999998865555433        345555544 447789888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHH
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAW  346 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~  346 (482)
                      |+..|...- .+..         .+..+...+. +++.+|...+..
T Consensus       536 A~~~lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S  571 (574)
T smart00638      536 AVLVLMETK-PSVA---------LLQRIAELLNKEPNLQVASFVYS  571 (574)
T ss_pred             HHHHHHhcC-CCHH---------HHHHHHHHHhhcCcHHHHHHhHH
Confidence            887776542 2233         2333444444 445666555443

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=86.53  E-value=3.1  Score=35.50  Aligned_cols=95  Identities=16%  Similarity=0.072  Sum_probs=71.7

Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHh-----cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC
Q 043116          306 ISNITAGNREQIQAVIDAGLIGPIVNLLQ-----DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD  380 (482)
Q Consensus       306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  380 (482)
                      +..+....|+....++++.+=-.+...+.     +....+|..++.+++.+..++++...+.+....+++.....++.++
T Consensus       123 lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~gS  202 (315)
T COG5209         123 LLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELGS  202 (315)
T ss_pred             HHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhhh
Confidence            33333445776667777665434444443     2345688999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHhchh
Q 043116          381 PQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       381 ~~v~~~~l~~L~~l~~~~~~  400 (482)
                      .--+..+..++..++..+..
T Consensus       203 ElSktvaifI~qkil~dDvG  222 (315)
T COG5209         203 ELSKTVAIFIFQKILGDDVG  222 (315)
T ss_pred             HHHHHHHHHHHHHHhccchh
Confidence            87777788888888865444

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=86.11  E-value=12  Score=44.26  Aligned_cols=264  Identities=14%  Similarity=0.170  Sum_probs=141.2

Q ss_pred             hcCCCHHHHHHHHHHHHHHhcCCCC-----CcHHHHHhcCCHHHHHHhh-cCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116           36 VWSDDNKVQLEATTLFRKMLSFDRN-----SPIEKVIQSGVVPRFVEFL-MREDYPQLQFEAARALTNIASGTSENTKVA  109 (482)
Q Consensus        36 l~s~~~~~~~~a~~~L~~l~~~~~~-----~~~~~~~~~g~~~~L~~ll-~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  109 (482)
                      +..++++++..+...++.+......     +..-. ....++..+..+- ..++ +.++......+.      ..+-...
T Consensus       490 ~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~-~v~~vl~~ll~~aia~~~-~~i~~~v~~~l~------~~~~~~l  561 (2341)
T KOG0891|consen  490 LEADDSEIRKNAALTCCELLKYDIICSQTSPHALQ-VVKEVLSALLTVAIADTD-PDIRIRVLSSLN------ERFDAQL  561 (2341)
T ss_pred             HhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHH-HHHHHHHHHHHHhccCCC-cchhhhHHhhhc------cchhhhh
Confidence            4467788888887777766654311     00000 0112233333332 2344 666554443333      2222334


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcC
Q 043116          110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      .+.+.+..+...+.++.-.++..+...+++++..+|...--..    -...+..+.   .+.-.-+...+..-+..+...
T Consensus       562 aQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~l----r~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~  637 (2341)
T KOG0891|consen  562 AQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSL----RKTLLELLTELEFSGMARTKEESAKLLCELIIS  637 (2341)
T ss_pred             cCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHH----HHHHHHHhchhhhcchHHhHHHHHHHhhHHHHH
Confidence            4445566677777788888999999999999977663211111    111111111   111111111111111111111


Q ss_pred             CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhH
Q 043116          187 KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGN  265 (482)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~  265 (482)
                      .+..........+..+...+...++.+...+..++..|+....+......+ ..++.+.+.+.+ .+..-+..+++++++
T Consensus       638 ~~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~  716 (2341)
T KOG0891|consen  638 SPVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVD-ELFSLIIKMLQDQSSLGKRLAALKALGQ  716 (2341)
T ss_pred             HHHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccc-hHHHHHHHHHHHhhhhhchhHHHHHhhh
Confidence            111122223445566677777788888888899999888655433333344 455666666544 445577888999999


Q ss_pred             hhcCChhhHHHHH-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC
Q 043116          266 IVTGDDFQTQCII-NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG  312 (482)
Q Consensus       266 l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~  312 (482)
                      +.....-...... ..-++..+...+.......++.++...++++...
T Consensus       717 l~s~~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g~~  764 (2341)
T KOG0891|consen  717 LESSTGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLGAL  764 (2341)
T ss_pred             hhcccceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhccc
Confidence            9875432222111 1245666777777766677888888888877653

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=85.82  E-value=19  Score=32.48  Aligned_cols=156  Identities=17%  Similarity=0.178  Sum_probs=90.8

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC--ChHHHHHhhC----CCCHHHHHHHHHHHHHhhCCChh
Q 043116           73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG--AVPIFVKLLA----SPSDDVREQAVWALGNVAGDSSR  146 (482)
Q Consensus        73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~L~~ll~----~~~~~~~~~a~~~L~~l~~~~~~  146 (482)
                      ..+...+..=. ++-+.-++..++-++. ++.....+...+  +...+..++.    +..+..+..++++++|+..... 
T Consensus        66 ~~~~~~~~~Wp-~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-  142 (268)
T PF08324_consen   66 ILLLKILLSWP-PESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-  142 (268)
T ss_dssp             HHHHHHHCCS--CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHhCC-CccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-
Confidence            33444443332 3446667777766665 455544444332  2344444332    3567888899999999986554 


Q ss_pred             hHHHHHHh-C-ChHHHHHHHcchh---hhhHHHHHHHHHHHhhcCC--CCCChhhhhhHHHHHHHHhc--cCChhHHHHH
Q 043116          147 CRDFVLSQ-G-ALIPLLAELNEHA---KLSMLRTATWTLSNFCRGK--PQPPFNQIRPALRVLAQLIR--SNDEKVLTDA  217 (482)
Q Consensus       147 ~~~~~~~~-~-~i~~l~~~l~~~~---~~~~~~~a~~~L~~L~~~~--~~~~~~~~~~~~~~L~~ll~--~~~~~~~~~~  217 (482)
                      .+..+... + .+...+..+....   +..++..++..+.|++...  ..........++..+.+.+.  ..+++....+
T Consensus       143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~  222 (268)
T PF08324_consen  143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRL  222 (268)
T ss_dssp             CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHH
T ss_pred             cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHH
Confidence            44544433 2 2333333332322   6778888888888887643  11122233456677777433  3689999999


Q ss_pred             HHHHHHhccCCcHH
Q 043116          218 CRALAYLADGTNDK  231 (482)
Q Consensus       218 l~~L~~l~~~~~~~  231 (482)
                      +-+++++...++..
T Consensus       223 LvAlGtL~~~~~~~  236 (268)
T PF08324_consen  223 LVALGTLLSSSDSA  236 (268)
T ss_dssp             HHHHHHHHCCSHHH
T ss_pred             HHHHHHHhccChhH
Confidence            99999999665543

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF12726 SEN1_N: SEN1 N terminal; InterPro: IPR024481 The yeast helicase Sen1 is an RNA polymerase II termination factor for noncoding RNA genes []

Probab=85.74  E-value=52  Score=34.85  Aligned_cols=115  Identities=13%  Similarity=0.081  Sum_probs=69.9

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhcccc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNT  404 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~  404 (482)
                      +...+...+.++++.+....+.++.++..-......+   ...-++.-..-....-..+......+|.++....      
T Consensus       442 lW~~l~~~~~~~~~~la~~lL~~~~~l~~l~~~~~~~---~~~~~~~~~~~~N~~~~~~~~~~~~il~rls~~~------  512 (727)
T PF12726_consen  442 LWKALLKSLDSDNPDLAKALLKSLSPLIGLEKFPPKK---EKDELDPAKTQFNKSLGQITDLISQILERLSDFD------  512 (727)
T ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHhccccccCCcc---cccCcchHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence            4555666666777777777777777776421111000   0000111111111111134444555566665542      


Q ss_pred             CCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          405 DNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       405 ~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                           ++.....+.+.+....+-.+.-|+++++++.|..++...|+.+.
T Consensus       513 -----~~~L~~l~~d~~~~~~i~s~lfsp~~~l~qaA~~llk~~~d~~~  556 (727)
T PF12726_consen  513 -----PSHLKELLSDPDAAQAIWSLLFSPDDDLYQAAQDLLKQAFDVDG  556 (727)
T ss_pred             -----HHHHHHHHcCcchhhHHHhheeCCChHHHHHHHHHHHHHhcCCc
Confidence                 34467888888999999999999999999999999999997544

The C-terminal domain of Sen1 is essential for cell growth, while the N-terminal domain appears to be dispensible []. This entry represents the N-terminal domain.

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.62  E-value=40  Score=37.32  Aligned_cols=109  Identities=13%  Similarity=0.108  Sum_probs=58.0

Q ss_pred             hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC----------------CCCHHHHHHHHHHHHHHHHh
Q 043116          334 QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP----------------CPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       334 ~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~----------------~~~~~v~~~~l~~L~~l~~~  397 (482)
                      .++.++||..|+..+..+............-+.-+...+..+|+                ....+.....+.++.++|.-
T Consensus      1007 ~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet~~ltisgIaklf~e 1086 (1610)
T KOG1848|consen 1007 EDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTETSCLTISGIAKLFSE 1086 (1610)
T ss_pred             ccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhhhhhhHHHHHHHHHH
Confidence            35668889989988888864322111111122223334444443                12224555677777777742


Q ss_pred             chhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      .-+  ...   ..|-+...  ....++.+..+..+.++++.-.|.+.+++..
T Consensus      1087 ~fk--~ll---nln~f~~v--we~ll~flkrl~s~~s~e~slsai~~~qell 1131 (1610)
T KOG1848|consen 1087 NFK--LLL---NLNGFLDV--WEELLQFLKRLHSDISPEISLSAIKALQELL 1131 (1610)
T ss_pred             HHH--HHH---hcccHHHH--HHHHHHHHHHHHhcCChHhHHHHHHHHHHHH
Confidence            211  110   01112221  2233566677778889999888888777643

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=85.51  E-value=52  Score=34.66  Aligned_cols=355  Identities=11%  Similarity=0.076  Sum_probs=170.1

Q ss_pred             HHHHHHHHhCCChHhHHHHHhCCChHHH---HHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch
Q 043116           91 AARALTNIASGTSENTKVAIDHGAVPIF---VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH  167 (482)
Q Consensus        91 a~~~L~~l~~~~~~~~~~~~~~g~i~~L---~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~  167 (482)
                      ++.+|.-+.. ..+....+.+.|.=..+   .+.-+..+..+.-.++..|+.++.++. +...+++.+++.+|+..=..+
T Consensus       329 ~~q~l~~lge-y~e~lpv~~~~g~~~~~~~~~~~~q~~d~~l~~~~~k~~~~l~~h~k-fa~~fv~~~gi~kll~vpr~s  406 (1516)
T KOG1832|consen  329 CIQCLEILGE-YVEVLPVLHEKGVDVCIVLLERTSQLDDSPLLPDVMKLICALAAHRK-FAAMFVERRGILKLLAVPRVS  406 (1516)
T ss_pred             HHHHHHHHHh-HHHHHHHHHHhCchhhhhhhhhhhccccccccHHHHHHHHHHHHhhH-HHHHHHHhhhhHHHhcCCCch
Confidence            4444444432 33444555555532222   222223444455567778888875554 456677888888777654222


Q ss_pred             hhhhHHHHHHHHHHHhhcCCC------CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH
Q 043116          168 AKLSMLRTATWTLSNFCRGKP------QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC  241 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~------~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l  241 (482)
                      .   ...-...||+.+.....      .....++..++..-+.++......-+.++...+..... .....+.+-....+
T Consensus       407 ~---~~~g~s~cly~~~~~q~~mervc~~p~~v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~-frail~~fd~~d~l  482 (1516)
T KOG1832|consen  407 E---TFYGLSSCLYTIGSLQGIMERVCALPLVVIHQVVKLAIELLDCSQDQARKNSALFFAAAFV-FRAILDAFDAQDSL  482 (1516)
T ss_pred             h---hhhhHHHHHHHHhhhhhHHHHHhhccHHHHHHHHHHHHHHHhcchhhccchHHHHHHHHHH-HHHHHHHHhhhhHH
Confidence            1   12223344444443321      11222335566666666665443333332221111100 00111222223455


Q ss_pred             HHHHHhhCC--------CC-----------hhhHHHHHHHHhHhhcCC-----hhhHHHHHhcCchHHHHHHhcCCCc--
Q 043116          242 PRLVKLLGH--------RS-----------RLVLTAALRTIGNIVTGD-----DFQTQCIINCGALRYLLGLLIHNHN--  295 (482)
Q Consensus       242 ~~L~~ll~~--------~~-----------~~v~~~a~~~L~~l~~~~-----~~~~~~l~~~~~i~~L~~ll~~~~~--  295 (482)
                      +.|+.++++        .+           .......|.++......+     +...+.-++.+.....+.-+..+..  
T Consensus       483 ~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~  562 (1516)
T KOG1832|consen  483 QKLLAILKDAASVTGANTDRSLPEVMISSSKQMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPL  562 (1516)
T ss_pred             HHHHHHHHHHHHHhccCcCccccHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcc
Confidence            666665543        11           112223455554433211     1112222233444444443333211  


Q ss_pred             ---hhHHHHHHHHHHHHhcC-------CHHHHHHHHHcCChHHHHHHHhc--------CChhHHHHHHHHHHHhhcCCCH
Q 043116          296 ---KSIKKEVCWIISNITAG-------NREQIQAVIDAGLIGPIVNLLQD--------AEFGTKKEAAWVISNATSGGTH  357 (482)
Q Consensus       296 ---~~v~~~a~~~L~nl~~~-------~~~~~~~l~~~~~i~~L~~ll~~--------~~~~~~~~a~~aL~~l~~~~~~  357 (482)
                         .+...+.+|-+-.+...       .......+.+.+.+..++++..-        +..++...|+.+|+-+..  -|
T Consensus       563 ~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~--iP  640 (1516)
T KOG1832|consen  563 DISNEAVEAIFLQLEKDRRLGPTFVKAQWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTS--IP  640 (1516)
T ss_pred             hhhhhHHHHHHHHHHHHHHhChhhhhhcchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEe--cc
Confidence               12234445554444432       22334556777778888877652        234566777777776655  23


Q ss_pred             HHHHHHHHc--------CChHHHHhcCC----CCCHHHHHHHHHHHHHHHHhchhccc----------------cCCCC-
Q 043116          358 EQIKHLVRE--------GCVKPLCDLLP----CPDPQIVTVCLIGLENILKVGEAEKN----------------TDNIG-  408 (482)
Q Consensus       358 ~~~~~l~~~--------~~l~~L~~ll~----~~~~~v~~~~l~~L~~l~~~~~~~~~----------------~~~~~-  408 (482)
                      .....+...        .++..|++.-.    --+++++..|+.+|.+..+-.+...+                .+... 
T Consensus       641 ~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~k  720 (1516)
T KOG1832|consen  641 DIQKALAHATLSNNRAYDGIAIILDAANGSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTK  720 (1516)
T ss_pred             hHHHHHHHHHhhcccccCceEEEeecccccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCc
Confidence            333333332        13444444332    23789999999999998765422110                00000 


Q ss_pred             ------cccHHHHHHHHhchHHHHHHhhcCCC-----HHHHHHHHHHHHHhcCCCC
Q 043116          409 ------DVNQYAQLVEEAEGLEKIENLQSHDN-----NDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       409 ------~~~~~~~~l~~~~~~~~l~~l~~~~~-----~~v~~~a~~~l~~~~~~~~  453 (482)
                            ...+.....+..+|+..|.+|++-.+     .-++..|-+.+-.+-.+..
T Consensus       721 s~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t  776 (1516)
T KOG1832|consen  721 SAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT  776 (1516)
T ss_pred             hHHHHHHHHHHHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH
Confidence                  11223444566788999999876544     4566777777766655543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=85.43  E-value=3.3  Score=35.97  Aligned_cols=80  Identities=23%  Similarity=0.275  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHhCCChHhHHHHHhCCCh-------HHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh-hHHHHHHhCC
Q 043116           86 QLQFEAARALTNIASGTSENTKVAIDHGAV-------PIFVKLLA-SPSDDVREQAVWALGNVAGDSSR-CRDFVLSQGA  156 (482)
Q Consensus        86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i-------~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~  156 (482)
                      .-|..|+.+|++++- .+.+.+.++..+-.       ..|.+++. .+++-.|+.|+-.|.+++..+.. ++....+.+.
T Consensus       139 SPqrlaLEaLcKLsV-~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  139 SPQRLALEALCKLSV-IENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CHHHHHHHHHHHhhe-eccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            458999999999987 55666666665543       44455554 47888999999999999976654 4566677788


Q ss_pred             hHHHHHHHcc
Q 043116          157 LIPLLAELNE  166 (482)
Q Consensus       157 i~~l~~~l~~  166 (482)
                      +..|+..+.+
T Consensus       218 i~~Li~FiE~  227 (257)
T PF12031_consen  218 ISHLIAFIED  227 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999943

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=85.35  E-value=28  Score=31.33  Aligned_cols=216  Identities=19%  Similarity=0.151  Sum_probs=118.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHhcCCC---CCcHHHHH------hc-CCHHHHHHhhcCC-CChHHHHHHHHHHHHHhCC
Q 043116           33 VAGVWSDDNKVQLEATTLFRKMLSFDR---NSPIEKVI------QS-GVVPRFVEFLMRE-DYPQLQFEAARALTNIASG  101 (482)
Q Consensus        33 ~~~l~s~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~------~~-g~~~~L~~ll~~~-~~~~v~~~a~~~L~~l~~~  101 (482)
                      +.+|.+..+..-..|+..|.++...-+   ....+.+.      .+ |..+-+..++-.+ .++...+.++..|..++..
T Consensus        13 vAcL~S~~E~EF~~aL~lL~~~l~k~dl~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~   92 (262)
T PF14225_consen   13 VACLESIHEHEFLEALSLLNKLLDKLDLDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPL   92 (262)
T ss_pred             HHhhcCCcHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCCcHHHHHHHHHHHhcC
Confidence            566777777777777777777766531   11111111      12 4444444443211 1133456677777777652


Q ss_pred             C-------hHhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch---
Q 043116          102 T-------SENTKVAIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH---  167 (482)
Q Consensus       102 ~-------~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~---  167 (482)
                      .       .+.|-.+.=.+.+|.++..+.+++    ......++..|+.+|....        ...+..++....+.   
T Consensus        93 ~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~--------~~~La~il~~ya~~~fr  164 (262)
T PF14225_consen   93 PDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQG--------LPNLARILSSYAKGRFR  164 (262)
T ss_pred             CCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCC--------CccHHHHHHHHHhcCCC
Confidence            1       112222222245677777777666    1333456678888873221        11233444444332   


Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116          168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL  247 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  247 (482)
                      +..+....++..|..-..  |    ......+..+..++.++-+.++...+..|..+...-+-...  ...+++..+.++
T Consensus       165 ~~~dfl~~v~~~l~~~f~--P----~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrl  236 (262)
T PF14225_consen  165 DKDDFLSQVVSYLREAFF--P----DHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRL  236 (262)
T ss_pred             CHHHHHHHHHHHHHHHhC--c----hhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHH
Confidence            233445555555543221  1    12256777788999888899999999999988865432222  334578888888


Q ss_pred             hCCCChhhHHHHHHHHhHhh
Q 043116          248 LGHRSRLVLTAALRTIGNIV  267 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~  267 (482)
                      +.++..   ..|+.+|-++.
T Consensus       237 L~t~~~---~eAL~VLd~~v  253 (262)
T PF14225_consen  237 LQTDLW---MEALEVLDEIV  253 (262)
T ss_pred             hCCccH---HHHHHHHHHHH
Confidence            876554   34454444443

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.85  E-value=62  Score=34.93  Aligned_cols=234  Identities=15%  Similarity=0.152  Sum_probs=123.1

Q ss_pred             hhhhccHHHHHHH-hcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC-
Q 043116           23 QSKFEILPTMVAG-VWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS-  100 (482)
Q Consensus        23 ~~~~~~i~~l~~~-l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~-  100 (482)
                      +++++++..|-.. |++++.+.+...+..+.++-+.. .++-...-+.--+|.++.-+..-. ..+|...+.+|---.. 
T Consensus       462 VkdLeAvqmLqdiFLkaenkdlqaeVlnrmfkIftsh-peNYricqelytvpllvlnmegfP-sslqvkiLkilEyAVtv  539 (2799)
T KOG1788|consen  462 VKDLEAVQMLQDIFLKAENKDLQAEVLNRMFKIFTSH-PENYRICQELYTVPLLVLNMEGFP-SSLQVKILKILEYAVTV  539 (2799)
T ss_pred             ccchHHHHHHHHHHHHhcCcchhhHHHHHHHHHhccC-hHHhhHHhhccccchhhhhhcCCC-hHHHHHHHHHHHHHHhh
Confidence            3445556655554 35778888888888888877654 333222335556788877776554 4556554444332111 


Q ss_pred             --CChHhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh---hhhHHH
Q 043116          101 --GTSENTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA---KLSMLR  174 (482)
Q Consensus       101 --~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~---~~~~~~  174 (482)
                        .-|+ +       -+-.|+-+|+.+- ..++...+.....+...+..+++.+.+.|.+..|...++++.   .++ +.
T Consensus       540 vncvPe-q-------ELlSLCvLLqqpIssalkhtIlsffvKLIsfDqqyKkvlREVGvLevLqddlkqhkll~gpd-qy  610 (2799)
T KOG1788|consen  540 VNCVPE-Q-------ELLSLCVLLQQPISSALKHTILSFFVKLISFDQQYKKVLREVGVLEVLQDDLKQHKLLRGPD-QY  610 (2799)
T ss_pred             hccCcH-H-------HHHHHHHHhcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHhhHHHHHHHHHHHhhhccCcc-hh
Confidence              0111 1       1234555666543 445555666666666677788999999999999988885432   000 00


Q ss_pred             HHHHHHHHhhcCCCCC-Chhh---hhhHHHHHHHHhccCC--hhH------HHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116          175 TATWTLSNFCRGKPQP-PFNQ---IRPALRVLAQLIRSND--EKV------LTDACRALAYLADGTNDKIQAVIEAGVCP  242 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~-~~~~---~~~~~~~L~~ll~~~~--~~~------~~~~l~~L~~l~~~~~~~~~~~~~~~~l~  242 (482)
                         .-.+......+.. .+..   ....+-.--.+..+..  ..+      ....-.||..+..++.++...+.+..++.
T Consensus       611 ---sgvsehydrnpss~sf~~~ld~~daiisspklmeSgsgklplfevlltitvgwDcLisllKnnteNqklFreanGvk  687 (2799)
T KOG1788|consen  611 ---SGVSEHYDRNPSSPSFKQHLDSQDAIISSPKLMESGSGKLPLFEVLLTITVGWDCLISLLKNNTENQKLFREANGVK  687 (2799)
T ss_pred             ---hhHHHHhhcCCCCchhhhccccccceeecchhhcccCCccchhhhhhhhhchHHHHHHHHhccchhhHHHHhhcCce
Confidence               0011111111111 0000   0000000011122211  111      11123466667777777777777777777


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  272 (482)
                      .+++++  -+++.|...++++..+....+.
T Consensus       688 lilpfl--indehRSslLrivscLitvdpk  715 (2799)
T KOG1788|consen  688 LILPFL--INDEHRSSLLRIVSCLITVDPK  715 (2799)
T ss_pred             EEEEee--echHHHHHHHHHHHHHhccCcc
Confidence            777777  3445667777777777665554

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=84.71  E-value=28  Score=32.96  Aligned_cols=153  Identities=16%  Similarity=0.070  Sum_probs=91.2

Q ss_pred             HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------cCChhHHHHHHHHHHHhccCC
Q 043116          159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----------SNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----------~~~~~~~~~~l~~L~~l~~~~  228 (482)
                      .++..+.+......+..++.++.-|+++............++.|+.+-.          ..+..+...++.||+|+.-++
T Consensus        49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcNlvf~S  128 (532)
T KOG4464|consen   49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCNLVFHS  128 (532)
T ss_pred             HHHHHHhcCCCchhhhhHHHHHHHHhccccccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHHHHhcc
Confidence            4555553333344455666777777777655554445555555555532          234578999999999999888


Q ss_pred             cHHHHHHHHhCcHHHHHHhhCCC----Ch-hhHHHHHHHHhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCC--------
Q 043116          229 NDKIQAVIEAGVCPRLVKLLGHR----SR-LVLTAALRTIGNIVTG-DDFQTQCIINCGALRYLLGLLIHNH--------  294 (482)
Q Consensus       229 ~~~~~~~~~~~~l~~L~~ll~~~----~~-~v~~~a~~~L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~--------  294 (482)
                      +...+...+......+.+.+...    .+ .+...=++.|.-+..- .+...+.+.+.++++.+-+++.+.-        
T Consensus       129 q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgidse~n~  208 (532)
T KOG4464|consen  129 QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGIDSEINV  208 (532)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCCCCcCC
Confidence            87777777776666666654321    11 1222223333333222 2444566677899999999986521        


Q ss_pred             ------chhHHHHHHHHHHHHhc
Q 043116          295 ------NKSIKKEVCWIISNITA  311 (482)
Q Consensus       295 ------~~~v~~~a~~~L~nl~~  311 (482)
                            +.....++..++.|+..
T Consensus       209 ~~l~pqe~n~a~EaLK~~FNvt~  231 (532)
T KOG4464|consen  209 PPLNPQETNRACEALKVFFNVTC  231 (532)
T ss_pred             CCCCHHHHHHHHHHHHHHhheee
Confidence                  12334566677777765

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=84.55  E-value=17  Score=28.19  Aligned_cols=72  Identities=15%  Similarity=0.219  Sum_probs=53.2

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc-CChHHHHhcCCCCCH--------HHHHHHHHHHHHHH
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDP--------QIVTVCLIGLENIL  395 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~--------~v~~~~l~~L~~l~  395 (482)
                      ++..|.+-|++.++.|+..++..|..++..|++.+...+... ..+..+.+.-..+++        .|+..|-+++.-++
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            556677777888899999999999999999998888776654 334445444442332        58888888888777


Q ss_pred             H
Q 043116          396 K  396 (482)
Q Consensus       396 ~  396 (482)
                      .
T Consensus       119 ~  119 (122)
T cd03572         119 S  119 (122)
T ss_pred             c
Confidence            4

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=84.44  E-value=15  Score=33.61  Aligned_cols=139  Identities=10%  Similarity=0.123  Sum_probs=74.1

Q ss_pred             CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHh----c-------CCCchhHHHHHHHHH
Q 043116          239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLL----I-------HNHNKSIKKEVCWII  306 (482)
Q Consensus       239 ~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll----~-------~~~~~~v~~~a~~~L  306 (482)
                      -++|.++.++.+.++.++..++.+|..+....+... ..+...|..+.+.+.+    .       ..++..+-..+.-++
T Consensus       119 liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  119 LIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            357889999999999999999999999997555432 2355556554443333    2       122455666666666


Q ss_pred             HHHhc-----C---CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116          307 SNITA-----G---NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC  378 (482)
Q Consensus       307 ~nl~~-----~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  378 (482)
                      ..++.     +   .......++..|++..+...-....+.++...+..+..+...-.....+.+..  .++.|.+.+.+
T Consensus       199 ~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~r--ii~~l~~~l~n  276 (282)
T PF10521_consen  199 LSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQR--IIPVLSQILEN  276 (282)
T ss_pred             HHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHH--HHHHHHHHhcC
Confidence            66643     1   11112223333333333222222245566555555555544322233333322  45555555444


Q ss_pred             C
Q 043116          379 P  379 (482)
Q Consensus       379 ~  379 (482)
                      +
T Consensus       277 p  277 (282)
T PF10521_consen  277 P  277 (282)
T ss_pred             C
Confidence            3

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=84.36  E-value=42  Score=34.04  Aligned_cols=290  Identities=14%  Similarity=0.161  Sum_probs=137.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      ++..+=+.+-++++.++.-|+..+.-..++..+++      .-.+-.|...+++++ ..++..|+.-|+-.-.++  +++
T Consensus       416 gL~qldkylys~~~~ikaGaLLgigi~~~gv~ne~------dpalALLsdyv~~~~-s~~ri~aIlGLglayaGs--q~e  486 (878)
T KOG2005|consen  416 GLEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC------DPALALLSDYLQSSS-SIHRIGAILGLGLAYAGS--QRE  486 (878)
T ss_pred             hHHHHHHHhhcCCchhhhccceeeeeecccccccc------CHHHHHHHHhccCCC-ceeehHHhhhhHHhhcCC--chH
Confidence            45555555556666666555544433333221111      112444556677777 677887777776554422  222


Q ss_pred             HHHhCCChHHHHHhhCCCC--HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          108 VAIDHGAVPIFVKLLASPS--DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      .+.     ..|..++.+.+  .++...|...|+.+..+...- + + ...+++.++..-.........+.....|.-+..
T Consensus       487 ~V~-----~lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~-d-v-ts~ilqtlmekse~El~d~~~RFL~LGL~llfl  558 (878)
T KOG2005|consen  487 EVL-----ELLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNE-D-V-TSSILQTLMEKSETELEDQWFRFLALGLALLFL  558 (878)
T ss_pred             HHH-----HHHhHHhcCCCCchhHHHHHHhhcceeEEecCCh-H-H-HHHHHHHHHHhhhhhhhchHHHHHHHHHHHHHh
Confidence            222     25566666544  346666666777776443221 1 1 111233333332111122333333333443333


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC---hhhHHHHHHH
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS---RLVLTAALRT  262 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~---~~v~~~a~~~  262 (482)
                      ...        ..+.....-+..-+..++..+-..+...+.......-.+-+    ..+..+-....   ...+..|+--
T Consensus       559 gkq--------e~~d~~~e~~~~i~~~~~~~~~~lv~~caYaGTGnvl~Iq~----q~ll~~cgE~~~~~e~~~~~avLg  626 (878)
T KOG2005|consen  559 GKQ--------ESVDAVVETIKAIEGPIRKHESILVKSCAYAGTGNVLKIQS----QLLLSFCGEHDADLESEQELAVLG  626 (878)
T ss_pred             ccc--------chHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCceEEech----hhhhhhcCCCccchhhhccchhhh
Confidence            321        11122222222222222222222221111111100000000    11112211111   1122234444


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKK  342 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  342 (482)
                      ++-++.+.+--.+.     .+..+-.++..+ ++.+|+..-.+++-++..+|..       ++++.|-++..+.+.++..
T Consensus       627 iAliAMgeeig~eM-----~lR~f~h~l~yg-e~~iRravPLal~llsvSNPq~-------~vlDtLsk~shd~D~eva~  693 (878)
T KOG2005|consen  627 IALIAMGEEIGSEM-----VLRHFGHLLHYG-EPHIRRAVPLALGLLSVSNPQV-------NVLDTLSKFSHDGDLEVAM  693 (878)
T ss_pred             hhhhhhhhhhhhHH-----HHHHHHHHHHcC-CHHHHHHHHHHHhhhccCCCcc-------hHHHHHHHhccCcchHHHH
Confidence            44444433322222     345677788888 8889998888888887766662       4677777888888999999


Q ss_pred             HHHHHHHHhhcCCCHHH
Q 043116          343 EAAWVISNATSGGTHEQ  359 (482)
Q Consensus       343 ~a~~aL~~l~~~~~~~~  359 (482)
                      +++.+++-+-...+..+
T Consensus       694 naIfamGLiGAGTnNAR  710 (878)
T KOG2005|consen  694 NAIFAMGLIGAGTNNAR  710 (878)
T ss_pred             HHHHHhccccCCcchHH
Confidence            99999887766544443

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=84.07  E-value=30  Score=30.72  Aligned_cols=129  Identities=14%  Similarity=0.164  Sum_probs=69.4

Q ss_pred             hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC-chhHHHHHHHHHHHHhcCCHHH
Q 043116          238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNREQ  316 (482)
Q Consensus       238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~~~~~~~  316 (482)
                      ...++.++.+++.++..    .-..++......-...-..+-.|=++.|..++.++. +.-+|..|+.++..+....+..
T Consensus        72 ~~A~~~li~l~~~~~~~----~~~l~GD~~tE~l~~ilasv~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~  147 (249)
T PF06685_consen   72 ERALPPLIRLFSQDDDF----LEDLFGDFITEDLPRILASVGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS  147 (249)
T ss_pred             hhhHHHHHHHHcCCcch----HHHHHcchhHhHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence            35678899988765541    111222222111111111223356677778887764 5679999999999999865665


Q ss_pred             HHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHH
Q 043116          317 IQAVIDAGLIGPIVNL-LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPL  372 (482)
Q Consensus       317 ~~~l~~~~~i~~L~~l-l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L  372 (482)
                      +..+++  .+..++.. +...+..+-..-+..++.+-...-...++.+.+.|.++..
T Consensus       148 Re~vi~--~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~~  202 (249)
T PF06685_consen  148 REEVIQ--YFRELLNYFLERNPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDPS  202 (249)
T ss_pred             HHHHHH--HHHHHHHHHhccCchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCcc
Confidence            666555  45555544 3333333333333344444322223345556667776653

The function of this family is unknown.

>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes

Probab=83.56  E-value=15  Score=33.57  Aligned_cols=79  Identities=15%  Similarity=0.233  Sum_probs=62.8

Q ss_pred             HcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCH-HHHHHHHHcCChHHHHhcCCCC---CHHHHHHHHHHHHHHH
Q 043116          322 DAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTH-EQIKHLVREGCVKPLCDLLPCP---DPQIVTVCLIGLENIL  395 (482)
Q Consensus       322 ~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~-~~~~~l~~~~~l~~L~~ll~~~---~~~v~~~~l~~L~~l~  395 (482)
                      +.|.+..+++.+..  .+...+-..+.++..+....++ ....++.+.|.++.++..+-++   +..+.....+.|+.++
T Consensus        93 ~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg~t~~~~Q~fl~~~GLLe~lv~eil~~~~~~~~v~Q~~FDLLGELi  172 (303)
T PF12463_consen   93 KKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRGATSYADQAFLAERGLLEHLVSEILSDGCMSQEVLQSNFDLLGELI  172 (303)
T ss_pred             cccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcCCCcHHHHHHHHhcchHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence            36678888888774  3567788899999999998877 5667888999999999866544   3368899999999999


Q ss_pred             Hhchh
Q 043116          396 KVGEA  400 (482)
Q Consensus       396 ~~~~~  400 (482)
                      +....
T Consensus       173 K~n~~  177 (303)
T PF12463_consen  173 KFNRD  177 (303)
T ss_pred             CCCHH
Confidence            86544

Proteins in this family are typically between 399 and 797 amino acids in length.

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.49  E-value=93  Score=35.94  Aligned_cols=230  Identities=16%  Similarity=0.083  Sum_probs=114.9

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      +..++..+..++ +..+-.+..+++.++..-++  ..++ .+..+.+++-+.+ .++..|.--.-+++.+-++.......
T Consensus       878 ~~l~~~sl~~~~-p~~rc~~~ea~arLaq~v~~--~~f~-a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~  953 (2067)
T KOG1822|consen  878 LTLIVNSLINPN-PKLRCAAAEALARLAQVVGS--APFV-ASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSG  953 (2067)
T ss_pred             HHHHhhhhccCC-hHHHHHHHHHHHHHHHhccc--cchH-HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCc
Confidence            444556666777 78888888888888762221  1111 1234455555554 44444443334444443221111000


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC---hhHHHH-----------
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND---EKVLTD-----------  216 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~---~~~~~~-----------  216 (482)
                      -.....+..++.+..++.++.++..++.++..+...............+..+..++-+..   .++...           
T Consensus       954 qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~ 1033 (2067)
T KOG1822|consen  954 QHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDE 1033 (2067)
T ss_pred             hhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhH
Confidence            001123556666665666778999999999988887633344445555555566554322   122211           


Q ss_pred             --HHHHHHHhccCCcH-HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116          217 --ACRALAYLADGTND-KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN  293 (482)
Q Consensus       217 --~l~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  293 (482)
                        .+.+++.=...+.. ..-..+....+....-++.++++.++..++.++-++--..+....   -.-+++.+..++.+.
T Consensus      1034 ~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n---~~~lV~~L~~~l~s~ 1110 (2067)
T KOG1822|consen 1034 DALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVN---LDSLVLQLCSLLSSS 1110 (2067)
T ss_pred             HHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhcc---HHHHHHHHHHHhcch
Confidence              12222211111111 011122222333344445667888999999999888754443221   112455566666554


Q ss_pred             CchhHHHHHHHHHHHH
Q 043116          294 HNKSIKKEVCWIISNI  309 (482)
Q Consensus       294 ~~~~v~~~a~~~L~nl  309 (482)
                       ..-.|.....++..+
T Consensus      1111 -~~i~r~~~~~clrql 1125 (2067)
T KOG1822|consen 1111 -YLILRRASFSCLRQL 1125 (2067)
T ss_pred             -hhhhhhhHHhhhhHH
Confidence             333434333333333

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.01  E-value=63  Score=33.61  Aligned_cols=319  Identities=11%  Similarity=0.079  Sum_probs=172.4

Q ss_pred             cHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHH--hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           28 ILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVI--QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        28 ~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ....+.++++.. |.-++..++..+.-+...-+ -..+.+.  -+.....+.++++.-..-+.+...+..++.+.....+
T Consensus       527 ~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~n-F~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e  605 (978)
T KOG1993|consen  527 LYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWN-FSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSE  605 (978)
T ss_pred             HHHHHHHhcCccccceeehHHHHHHHHhhhhcc-CChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH
Confidence            456667777755 67777788888877776531 1112111  2344555556665433246677777777766543222


Q ss_pred             hHHHHHhCCChHHHHHhhC---CCCHHHHHHHHHHHHHhhC----CChhhHHHHHHhCChHHHHHHHcchhhh---hHHH
Q 043116          105 NTKVAIDHGAVPIFVKLLA---SPSDDVREQAVWALGNVAG----DSSRCRDFVLSQGALIPLLAELNEHAKL---SMLR  174 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~---~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~~~i~~l~~~l~~~~~~---~~~~  174 (482)
                      ...-..  +-+-.++..+-   .+.+-+|.+.+.++.|+..    .++.+..      ++-+++.+--+-+++   -..+
T Consensus       606 ~I~P~~--~~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~------fL~pVIel~~D~~sP~hv~L~E  677 (978)
T KOG1993|consen  606 HIAPYA--STIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYP------FLYPVIELSTDPSSPEHVYLLE  677 (978)
T ss_pred             hhhHHH--HHHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchH------HHHHHHHHhcCCCCCceeehhh
Confidence            221111  11112222222   2445677777888888862    1111111      122333333222222   2333


Q ss_pred             HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhc-cCCcHHHHHHHHhCcHHHHHHhhCCCCh
Q 043116          175 TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLA-DGTNDKIQAVIEAGVCPRLVKLLGHRSR  253 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~-~~~~~~~~~~~~~~~l~~L~~ll~~~~~  253 (482)
                      .+.........+.+ .-....-+++|.+...+....+ ....++..+..-. -.++. .-.....|++..+..++.+-..
T Consensus       678 DgmeLW~~~L~n~~-~l~p~ll~L~p~l~~~iE~ste-~L~t~l~Ii~sYilLd~~~-fl~~y~~~i~k~~~~~l~dvr~  754 (978)
T KOG1993|consen  678 DGMELWLTTLMNSQ-KLTPELLLLFPHLLYIIEQSTE-NLPTVLMIISSYILLDNTV-FLNDYAFGIFKKLNDLLDDVRN  754 (978)
T ss_pred             hHHHHHHHHHhccc-ccCHHHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHhhH
Confidence            44433333333322 2223345777888777764433 3333344333222 22222 2223344788888888877666


Q ss_pred             hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHh-cCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHH
Q 043116          254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL-IHNHNKSIKKEVCWIISNITAGNREQIQAVID-AGLIGPIVN  331 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~  331 (482)
                      +-....+.++..+...++ ........++++.+..-+ ...+.|.+...-..+++.++..+++....+++ ..-.+.++.
T Consensus       755 egl~avLkiveili~t~~-il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi~l~n~~~~msvlqt~~~~d~~~~  833 (978)
T KOG1993|consen  755 EGLQAVLKIVEILIKTNP-ILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARISLRNPSLFMSVLQTKNTYDILIA  833 (978)
T ss_pred             HHHHHHHHHHHHHHhhhH-HHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHHHhcChHHHHHHHHhhhhHHHHHH
Confidence            666777777777776555 334456667888776444 44447778888888888888877887766664 332333332


Q ss_pred             --------HHh-cCChhHHHHHHHHHHHhhcCCCHHH
Q 043116          332 --------LLQ-DAEFGTKKEAAWVISNATSGGTHEQ  359 (482)
Q Consensus       332 --------ll~-~~~~~~~~~a~~aL~~l~~~~~~~~  359 (482)
                              +.+ -.+++-|+--+-|+..+...+++.-
T Consensus       834 ~li~~WI~~~~~I~~~k~rKl~~LalsSll~t~~~~i  870 (978)
T KOG1993|consen  834 MLIGNWILLFDHINHPKDRKLNTLALSSLLRTNNPDI  870 (978)
T ss_pred             HHHHHHHHHcccCCCHHHhhHHHHHHHHHhccCCcHH
Confidence                    222 2467888888888888887655543

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=82.83  E-value=42  Score=33.65  Aligned_cols=215  Identities=10%  Similarity=-0.033  Sum_probs=116.0

Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-----------cCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116          169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-----------SNDEKVLTDACRALAYLADGTNDKIQAVIE  237 (482)
Q Consensus       169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-----------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  237 (482)
                      +.++...+-..|..+...      .....++..|..+..           .-++.++...+..|+.-....      -..
T Consensus       250 ~~~V~~~ae~~LKr~~~~------~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa------~~~  317 (501)
T PF13001_consen  250 NSSVSDRAEDLLKRLSVS------LEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAA------TSF  317 (501)
T ss_pred             cchHHHHHHHHHhhcCCC------CCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHH------hCC
Confidence            345555555566555543      112456666666655           234667777777666522100      011


Q ss_pred             hCcHHHHHHhhCCC--ChhhHHHHHHHH---hHhhcCChhhHHHHHhcCchHHHHHHhc-------CCCchhHHHHHHHH
Q 043116          238 AGVCPRLVKLLGHR--SRLVLTAALRTI---GNIVTGDDFQTQCIINCGALRYLLGLLI-------HNHNKSIKKEVCWI  305 (482)
Q Consensus       238 ~~~l~~L~~ll~~~--~~~v~~~a~~~L---~~l~~~~~~~~~~l~~~~~i~~L~~ll~-------~~~~~~v~~~a~~~  305 (482)
                      ..++..+...+.+.  +..++..++..+   .....+.....-..+...+...+...++       +..+...|..+-.+
T Consensus       318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~  397 (501)
T PF13001_consen  318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET  397 (501)
T ss_pred             ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence            12334444445555  566777777777   5555443322222222223333333342       12267899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH-HHHHHcCChHHHH-hcCCCCCHHH
Q 043116          306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI-KHLVREGCVKPLC-DLLPCPDPQI  383 (482)
Q Consensus       306 L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~-~~l~~~~~l~~L~-~ll~~~~~~v  383 (482)
                      |+.++...+.....  +-+++..|++-+..++++++..+-.||..++..-....- ........+..+. ....+....+
T Consensus       398 lG~L~~~~p~l~~~--d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  475 (501)
T PF13001_consen  398 LGLLAKRAPSLFSK--DLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSC  475 (501)
T ss_pred             HHHHHccCcccccc--cHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHH
Confidence            99999876664321  244788888888888999999988888888652111000 0000111122222 2223444567


Q ss_pred             HHHHHHHHHHHHHh
Q 043116          384 VTVCLIGLENILKV  397 (482)
Q Consensus       384 ~~~~l~~L~~l~~~  397 (482)
                      +..+++-...++-+
T Consensus       476 R~~avk~an~~fpf  489 (501)
T PF13001_consen  476 RYAAVKYANACFPF  489 (501)
T ss_pred             HHHHHHHHHHhCCc
Confidence            77777777666644

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=82.79  E-value=17  Score=30.42  Aligned_cols=76  Identities=16%  Similarity=0.259  Sum_probs=57.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      -+|.+++.++..+...++.|...+..+......+..-.++ .-++..+-..|.+.+ +++...++.+|..++..++..
T Consensus        39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvl-PqLI~plk~AL~tr~-~~V~~~~L~~Lq~Lv~~~~~v  114 (183)
T PF10274_consen   39 YLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVL-PQLIIPLKRALNTRD-PEVFCATLKALQQLVTSSDMV  114 (183)
T ss_pred             HHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHH-HHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhhhhh
Confidence            4788999999877777888888888888773233333333 346777788889999 999999999999996644433

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=82.22  E-value=43  Score=31.19  Aligned_cols=181  Identities=11%  Similarity=0.125  Sum_probs=105.6

Q ss_pred             hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHH-HhcC---C----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043116          254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG-LLIH---N----HNKSIKKEVCWIISNITAGNREQIQAVIDAGL  325 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~-ll~~---~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  325 (482)
                      .+++..++.+.......++. .. +....++.++. +|.+   .    .++++-.-.+.++..+-....+....+++ .+
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~-~~-v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~-~v  118 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDP-EE-VANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILE-AV  118 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-H-HH-HHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHhccCCH-HH-HHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHH-HH
Confidence            46777777777777654432 22 33456666665 3321   2    13444444444444443322333444444 46


Q ss_pred             hHHHHHHHhc---CChhHHHHHHHHHHHhhcCC-------CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          326 IGPIVNLLQD---AEFGTKKEAAWVISNATSGG-------THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       326 i~~L~~ll~~---~~~~~~~~a~~aL~~l~~~~-------~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +...+.++..   +-|+.+..-...|..+...+       +++..+.     +++.+.-.++++++++...++.++..++
T Consensus       119 f~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~-----~idsi~wg~kh~~~~I~~~~L~~l~~ll  193 (319)
T PF08767_consen  119 FECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKL-----VIDSIVWGFKHTNREISETGLNILLELL  193 (319)
T ss_dssp             HHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHH-----HHHHHHHHHTSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHH-----HHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            6677777763   35788877777777776532       2222222     5667777789999999999999999999


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHh----hcCCCHHHHHHHHHHHHHhcC
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL----QSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      ......        ...+...|-+.-.++.+.++    .++......+.-..++..+|.
T Consensus       194 ~~~~~~--------~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~  244 (319)
T PF08767_consen  194 NNVSKT--------NPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFR  244 (319)
T ss_dssp             HHHHH---------SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHH
T ss_pred             HHHHhc--------CHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHH
Confidence            877661        12245555555555555555    345555566666688888874

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=82.03  E-value=63  Score=38.66  Aligned_cols=252  Identities=14%  Similarity=0.089  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC----CCh--hhhhhHHHHHH
Q 043116          130 REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ----PPF--NQIRPALRVLA  203 (482)
Q Consensus       130 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~----~~~--~~~~~~~~~L~  203 (482)
                      ...|.++++++-........      .+...+.......+.+++..+..++..+....+.    ...  ..+...+..+.
T Consensus       461 ~~~a~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll  534 (2341)
T KOG0891|consen  461 IQLAFKTLGGFKFSGYSLTL------FVQQCVDSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALL  534 (2341)
T ss_pred             HHHHHHHHhhhhhhhhhHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHH
Confidence            34466777766432221111      2233233332566777888876666666555422    111  12455555555


Q ss_pred             HH-hccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCc
Q 043116          204 QL-IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGA  282 (482)
Q Consensus       204 ~l-l~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~  282 (482)
                      .+ +..+++.++......+.      ........+.+.+..+...+.+..-.++..+...+++++..++.....-+....
T Consensus       535 ~~aia~~~~~i~~~v~~~l~------~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~  608 (2341)
T KOG0891|consen  535 TVAIADTDPDIRIRVLSSLN------ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTL  608 (2341)
T ss_pred             HHhccCCCcchhhhHHhhhc------cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHH
Confidence            55 34567777777766654      122233555566677777788888889999999999999988855443333333


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHH
Q 043116          283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKH  362 (482)
Q Consensus       283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~  362 (482)
                      +..+-.+-.+. -..++...+.-+..+....+..+...++ ..+..++..+.+.+..+...+..++..|+..+..+. ..
T Consensus       609 l~~~s~l~~sg-~~r~~~~~a~~~~~~i~~~~~~i~~~v~-~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~-~~  685 (2341)
T KOG0891|consen  609 LELLTELEFSG-MARTKEESAKLLCELIISSPVLISPYVG-PILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEM-VK  685 (2341)
T ss_pred             HHHhchhhhcc-hHHhHHHHHHHhhHHHHHHHHHHHhhcC-chHHHHHHHHhccchhhHHHHHHHHHHHHHhccchh-hh
Confidence            33333333333 3333344443343333344443433333 345666667777888888899999999987654222 11


Q ss_pred             HHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHh
Q 043116          363 LVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       363 l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..+ ..+..+.+.+.. .+..-+..+++.+.++...
T Consensus       686 ~~~-~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  686 WVD-ELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             ccc-hHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            122 344444444433 3334555666777776653

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=81.62  E-value=17  Score=29.09  Aligned_cols=74  Identities=11%  Similarity=0.084  Sum_probs=58.0

Q ss_pred             ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHH-HHhcCCC---CCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKP-LCDLLPC---PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~-L~~ll~~---~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..|..-+. +.++.++..|+..|-.++.++.......+...+++.. |+.++..   .+..|+.+++..+.......
T Consensus        39 a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f  117 (141)
T cd03565          39 AVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF  117 (141)
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence            3444555555 4688899999999999999998888888888899987 8888863   34589999998888887543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	482
4b8j_A	528	Rimp_alpha1a Length = 528		0.0
2yns_A	490	Rimp_alpha_b54nls Length = 490		0.0
3tj3_A	447	Structure Of Importin A5 Bound To The N-Terminus Of		1e-121
2jdq_A	450	C-Terminal Domain Of Influenza A Virus Polymerase P		1e-120
1bk5_A	422	Karyopherin Alpha From Saccharomyces Cerevisiae Len		1e-118
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-118
1bk6_A	422	Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng		1e-118
1ee4_A	423	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-117
1ee5_A	424	Yeast Karyopherin (Importin) Alpha In A Complex Wit		1e-117
1un0_A	443	Crystal Structure Of Yeast Karyopherin (Importin) A		1e-117
2c1t_A	454	Structure Of The Kap60p:nup2 Complex Length = 454		1e-117
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		1e-102
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		1e-102
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		1e-101
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		1e-101
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		1e-101
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		1e-101
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		1e-101
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		1e-101
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		1e-101
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		1e-101
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		1e-101
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		1e-101
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-101
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		1e-101
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		1e-100
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-100
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		1e-33
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		2e-28
4db9_A	210	Designed Armadillo Repeat Protein (Yiiim3aiii) Leng		1e-22
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-28
4db6_A	210	Designed Armadillo Repeat Protein (Yiiim3aii) Lengt		4e-26
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		2e-25
4hxt_A	252	Crystal Structure Of Engineered Protein. Northeast		6e-22
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		4e-25
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		9e-23

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score =  644 bits (1661), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/469 (69%), Positives = 372/469 (79%), Gaps = 16/469 (3%)
Query: 10  QFQISAPA-LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQ 68
           Q Q   PA  +  +  K E LP M+ GV+SDDN +QLEATT FRK+LS +R+ PIE+VIQ
Sbjct: 56  QAQAPVPASAATGVDKKLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQ 115
Query: 69  SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
           SGVVPRFV+FL RED+PQLQFEAA ALTNIASGTSENTKV IDHGAVPIFVKLL S SDD
Sbjct: 116 SGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDD 175
Query: 129 VREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
           VREQAVWALGNVAGDS +CRD VL+ GAL+PLLA+LNEH KLSMLR ATWTLSNFCRGKP
Sbjct: 176 VREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKP 235
Query: 189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL 248
           QP F Q RPAL  LA+LI SNDE+VLTDAC AL+YL+DGTNDKIQAVIEAGVCPRLV+LL
Sbjct: 236 QPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELL 295
Query: 249 GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308
            H S  VL  ALRT+GNIVTGDD QTQCII+  AL  LL LL  N  KSIKKE CW ISN
Sbjct: 296 LHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISN 355
Query: 309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC 368
           ITAGN++QIQAVI+AG+IGP+VNLLQ AEF  KKEAAW ISNATSGG+H+QIK+LV EGC
Sbjct: 356 ITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGC 415
Query: 369 VKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN 428
           +K           +IVTVCL GLENILKVGE +K T   GDVN ++Q+++EAEGLEKIEN
Sbjct: 416 IKPLCDLLICPDIRIVTVCLEGLENILKVGETDK-TLAAGDVNVFSQMIDEAEGLEKIEN 474
Query: 429 LQSHDNNDIHEMSVKILETYWCGRVVGPQPGLTYAGNEGEDALGSNVIA 477
           LQSHDNN+I+E +VKILE YW               +E +D +G+  +A
Sbjct: 475 LQSHDNNEIYEKAVKILEAYWM--------------DEEDDTMGATTVA 509

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score =  639 bits (1649), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/449 (71%), Positives = 364/449 (81%), Gaps = 15/449 (3%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           LP M+ GV+SDDN +QLEATT FRK+LS +R+ PIE+VIQSGVVPRFV+FL RED+PQLQ
Sbjct: 38  LPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQ 97
Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
           FEAA ALTNIASGTSENTKV IDHGAVPIFVKLL S SDDVREQAVWALGNVAGDS +CR
Sbjct: 98  FEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCR 157
Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS 208
           D VL+ GAL+PLLA+LNEH KLSMLR ATWTLSNFCRGKPQP F Q RPAL  LA+LI S
Sbjct: 158 DLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHS 217
Query: 209 NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
           NDE+VLTDAC AL+YL+DGTNDKIQAVIEAGVCPRLV+LL H S  VL  ALRT+GNIVT
Sbjct: 218 NDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVT 277
Query: 269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGP 328
           GDD QTQCII+  AL  LL LL  N  KSIKKE CW ISNITAGN++QIQAVI+AG+IGP
Sbjct: 278 GDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGP 337
Query: 329 IVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTVCL 388
           +VNLLQ AEF  KKEAAW ISNATSGG+H+QIK+LV EGC+K           +IVTVCL
Sbjct: 338 LVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCL 397
Query: 389 IGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448
            GLENILKVGE +K T   GDVN ++Q+++EAEGLEKIENLQSHDNN+I+E +VKILE Y
Sbjct: 398 EGLENILKVGETDK-TLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAY 456
Query: 449 WCGRVVGPQPGLTYAGNEGEDALGSNVIA 477
           W               +E +D +G+  +A
Sbjct: 457 WM--------------DEEDDTMGATTVA 471

>pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447

Iteration: 1
 Score =  430 bits (1105), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 228/424 (53%), Positives = 296/424 (69%), Gaps = 4/424 (0%)
Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQ 86
           I   M+  ++S   + QL AT  FRK+LS + N PI++VI + GVV RFVEFL R++   
Sbjct: 18  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 77
Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           LQFE+A  LTNIASG S  T++ I  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS+ 
Sbjct: 78  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 137
Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-FNQIRPALRVLAQL 205
           CRD+VL    L PLL   ++  +L+M R A W LSN CRGK  PP F ++ P L VL+ L
Sbjct: 138 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 197
Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
           +  +D  VL DAC AL+YL+DG NDKIQAVI+AGVC RLV+LL H    V++ ALR +GN
Sbjct: 198 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 257
Query: 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
           IVTGDD QTQ I+NC +    L  L+ +  +SIKKE CW ISNITAGNR QIQ VIDA +
Sbjct: 258 IVTGDDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 316
Query: 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVT 385
              ++++LQ AEF T+KEAAW I+NATSGG+ EQIK+LV  GC+K           +IV 
Sbjct: 317 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 376
Query: 386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
           V L GLENIL++GE E   +  G +N Y  L+EEA GL+KIE LQSH+N +I++ +  ++
Sbjct: 377 VALNGLENILRLGEQEAKRNGTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 435
Query: 446 ETYW 449
           E Y+
Sbjct: 436 EHYF 439

>pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450

Iteration: 1
 Score =  429 bits (1104), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 228/424 (53%), Positives = 296/424 (69%), Gaps = 4/424 (0%)
Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQ 86
           I   M+  ++S   + QL AT  FRK+LS + N PI++VI + GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80
Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           LQFE+A  LTNIASG S  T++ I  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS+ 
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140
Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-FNQIRPALRVLAQL 205
           CRD+VL    L PLL   ++  +L+M R A W LSN CRGK  PP F ++ P L VL+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200
Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
           +  +D  VL DAC AL+YL+DG NDKIQAVI+AGVC RLV+LL H    V++ ALR +GN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260
Query: 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
           IVTGDD QTQ I+NC +    L  L+ +  +SIKKE CW ISNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319
Query: 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVT 385
              ++++LQ AEF T+KEAAW I+NATSGG+ EQIK+LV  GC+K           +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379
Query: 386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
           V L GLENIL++GE E   +  G +N Y  L+EEA GL+KIE LQSH+N +I++ +  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNGTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438
Query: 446 ETYW 449
           E Y+
Sbjct: 439 EHYF 442

>pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/425 (54%), Positives = 299/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE+ TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENILK+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 358 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 445 LETYW 449
           +ETY+
Sbjct: 417 IETYF 421

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score =  422 bits (1084), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/425 (54%), Positives = 299/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 89  LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 147
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 148 QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 207
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 208 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 266
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 267 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 326
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 327 VTGNDLQTQVVINAGVLP-ALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 385
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE+ TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENILK+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 446 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 504
Query: 445 LETYW 449
           +ETY+
Sbjct: 505 IETYF 509

>pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422

Iteration: 1
 Score =  420 bits (1080), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 229/425 (53%), Positives = 299/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 1   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 59
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 60  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 119
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 120 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 178
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 179 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 238
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 239 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 297
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE+ TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 298 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 357
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENI+K+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 358 EVTLDALENIIKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 416
Query: 445 LETYW 449
           +ETY+
Sbjct: 417 IETYF 421

>pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE  TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENILK+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 360 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 418
Query: 445 LETYW 449
           +ETY+
Sbjct: 419 IETYF 423

>pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424

Iteration: 1
 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 3   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 61
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 62  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 121
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 122 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 180
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 181 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 240
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 241 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 299
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE  TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 300 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 359
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENILK+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 360 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 418
Query: 445 LETYW 449
           +ETY+
Sbjct: 419 IETYF 423

>pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443

Iteration: 1
 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE  TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENILK+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 359 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 445 LETYW 449
           +ETY+
Sbjct: 418 IETYF 422

>pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454

Iteration: 1
 Score =  419 bits (1076), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 230/425 (54%), Positives = 298/425 (70%), Gaps = 8/425 (1%)
Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ-L 87
           LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF MRE+ P+ L
Sbjct: 2   LPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF-MRENQPEML 60
Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
           Q EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+  
Sbjct: 61  QLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDY 120
Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRPALRVLAQLI 206
           RD+VL   A+ P+L   N + K S++RTATWTLSN CRG KPQP ++ +  AL  LA+LI
Sbjct: 121 RDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI 179
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GNI
Sbjct: 180 YSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNI 239
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG+D QTQ +IN G L   L LL+ +  ++IKKE CW ISNITAGN EQIQAVIDA LI
Sbjct: 240 VTGNDLQTQVVINAGVLPA-LRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLI 298
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQ--IKHLVREGCVKXXXXXXXXXXXQIV 384
            P+V LL+ AE  TKKEA W ISNA+SGG      I++LV +GC+K           +I+
Sbjct: 299 PPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 358
Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
            V L  LENILK+GEA+K    + ++N+ A  +E+A G+EKI N Q ++N+ I+E + KI
Sbjct: 359 EVTLDALENILKMGEADKEARGL-NINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKI 417
Query: 445 LETYW 449
           +ETY+
Sbjct: 418 IETYF 422

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 421 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 447 TYW 449
            Y+
Sbjct: 475 KYF 477

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score =  367 bits (942), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 421 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 447 TYW 449
            Y+
Sbjct: 475 KYF 477

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 121
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 122 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 181
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 182 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 241
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 242 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 301
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 360
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 421 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 474
Query: 447 TYW 449
            Y+
Sbjct: 475 KYF 477

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 371 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 447 TYW 449
            Y+
Sbjct: 425 KYF 427

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 78  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 198 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 257
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 258 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 316
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 317 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 376
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 377 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430
Query: 447 TYW 449
            Y+
Sbjct: 431 KYF 433

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 371 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 447 TYW 449
            Y+
Sbjct: 425 KYF 427

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 366 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 447 TYW 449
            Y+
Sbjct: 420 KYF 422

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score =  367 bits (941), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 370 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 447 TYW 449
            Y+
Sbjct: 424 KYF 426

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 107
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 108 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 167
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 168 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 227
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 228 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 287
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 288 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 346
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 347 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 406
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 407 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 460
Query: 447 TYW 449
            Y+
Sbjct: 461 KYF 463

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 66
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 67  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 126
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 127 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 186
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 187 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 246
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 247 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 305
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 306 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 365
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 366 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 419
Query: 447 TYW 449
            Y+
Sbjct: 420 KYF 422

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 46  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 105
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 106 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 165
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 166 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 225
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 226 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 285
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 286 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 344
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 345 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 404
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 405 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 458
Query: 447 TYW 449
            Y+
Sbjct: 459 KYF 461

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 71
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 72  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 131
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 132 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 191
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 192 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 251
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 252 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 310
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 311 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 370
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 371 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 424
Query: 447 TYW 449
            Y+
Sbjct: 425 KYF 427

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 38  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 97
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 98  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 157
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 158 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 217
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 218 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 277
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 278 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 336
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 337 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 396
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 397 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 450
Query: 447 TYW 449
            Y+
Sbjct: 451 KYF 453

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score =  366 bits (940), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 193/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 70
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 71  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 130
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 131 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 190
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 191 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 250
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 251 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 309
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 310 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 369
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 370 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 423
Query: 447 TYW 449
            Y+
Sbjct: 424 KYF 426

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score =  363 bits (931), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 192/423 (45%), Positives = 272/423 (64%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S + + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL R D   +QFE+
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFES 72
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  RD V
Sbjct: 73  AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLV 132
Query: 152 LSQGALIPLLAELNEHAKLSM----LRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L      S+    LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 133 IKYGAVDPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLL 192
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             +D +VL D C A++YL DG N++I  V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 193 HHDDPEVLADTCWAISYLTDGPNERIGMVVKTGVVPQLVKLLGASELPIVTPALRAIGNI 252
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 253 VTGTDEQTQVVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 311
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V++L  A+F T+KEA W ++N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 312 PFLVSVLSKADFKTQKEAVWAVTNYTSGGTVEQIVYLVHCGIIEPLMNLLTAKDTKIILV 371
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ+H+N  +++ S+ ++E
Sbjct: 372 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQNHENESVYKASLSLIE 425
Query: 447 TYW 449
            Y+
Sbjct: 426 KYF 428

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 191/423 (45%), Positives = 270/423 (63%), Gaps = 12/423 (2%)
Query: 32  MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +QFE+
Sbjct: 81  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 140
Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV 151
           A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AG  S  RD V
Sbjct: 141 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLV 200
Query: 152 LSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLI 206
           +  GA+ PLLA L            LR  TWTLSN CR K P PP + +   L  L +L+
Sbjct: 201 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 260
Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
             ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR IGNI
Sbjct: 261 HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320
Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
           VTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ GL+
Sbjct: 321 VTGTDEQTQKVIDAGALAVFPSLLT-NPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV 379
Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTV 386
             +V +L  A+F T+K AAW I+N TSGGT EQI +LV  G ++           +I+ V
Sbjct: 380 PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 439
Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
            L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ ++E
Sbjct: 440 ILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 493
Query: 447 TYW 449
            Y+
Sbjct: 494 KYF 496

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score =  140 bits (353), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 91/248 (36%), Positives = 131/248 (52%), Gaps = 14/248 (5%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
           L  + Q + S+D +    A R  + +    N++IQAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
           AL  + NI +G + Q Q +I+ GAL  L+ LL  + N+ I +E  W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKXXXXXXXX 378
           AVIDAG +  +V LL        +EA W +SN  SGG +EQI+ ++  G +         
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSS 191
Query: 379 XXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIH 438
              QI+   L  L NI   G            N+  Q V+EA  LEK+E LQSH+N  I 
Sbjct: 192 PNEQILQEALWALSNIASGG------------NEQKQAVKEAGALEKLEQLQSHENEKIQ 239
Query: 439 EMSVKILE 446
           + + + LE
Sbjct: 240 KEAQEALE 247

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  123 bits (309), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 70/172 (40%), Positives = 100/172 (58%), Gaps = 3/172 (1%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
           L  + Q + S D++ L  A R L+ +A G N++IQAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
           AL  + NI +G + Q Q +I+ GAL  L+ LL  + N+ I +E  W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVK 370
           AVIDAG +  +V LL        +EA W +SN  SGG  +  K  V+E   +
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEAGAE 182

>pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210

Iteration: 1
 Score =  104 bits (260), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 14/206 (6%)
Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
            P++V+ L    +  L +ALR +  I +G + Q Q +I+ GAL  L+ LL  + N+ I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E  W +SNI +G  EQIQAVIDAG +  +V LL        +EA W +SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           + ++  G +            QI+   L  L NI   G            N+  Q V+EA
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQKQAVKEA 179
Query: 421 EGLEKIENLQSHDNNDIHEMSVKILE 446
                +E LQS  N  I + + + LE
Sbjct: 180 GAEPALEQLQSSPNEKIQKEAQEALE 205

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  122 bits (307), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 70/168 (41%), Positives = 99/168 (58%), Gaps = 3/168 (1%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
           L  + Q + S D++ L  A R L+ +A G N++IQAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
           AL  + NI +G + Q Q +I+ GAL  L+ LL  + N+ I +E  W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE 366
           AVIDAG +  +V LL        +EA W +SN  SGG  +  K  V+E
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKE 178

>pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210

Iteration: 1
 Score =  115 bits (289), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 75/206 (36%), Positives = 108/206 (52%), Gaps = 14/206 (6%)
Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
            P++V+ L    +  L +ALR +  I +G + Q Q +I+ GAL  L+ LL  + N+ I +
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E  W +SNI +G  EQIQAVIDAG +  +V LL        +EA W +SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           + ++  G +            QI+   L  L NI   G            N+  Q V+EA
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQKQAVKEA 179
Query: 421 EGLEKIENLQSHDNNDIHEMSVKILE 446
             LEK+E LQSH+N  I + + + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 130/286 (45%), Gaps = 48/286 (16%)
Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
           V + V+ L   D  + Q EAAR L  IASG +   K  +D G V + VKLL S   +V++
Sbjct: 4   VEKLVKLLTSTDS-ETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQK 62
Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
           +A  AL                                           +N   G P   
Sbjct: 63  EAARAL-------------------------------------------ANIASG-PDEA 78
Query: 192 FNQIRPA--LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG 249
              I  A  + VL +L+ S D +V  +A RALA +A G ++ I+A+++AG    LVKLL 
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNI 309
                V   A R + NI +G D   + I++ G +  L+ LL    ++ ++KE    ++NI
Sbjct: 139 STDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE-VQKEAARALANI 197
Query: 310 TAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG 355
            +G    I+A++DAG +  +  LL   +   +KEA   + N  SGG
Sbjct: 198 ASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG 243

>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252

Iteration: 1
 Score =  102 bits (253), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/223 (31%), Positives = 112/223 (50%), Gaps = 5/223 (2%)
Query: 174 RTATWTLSNFCRGKPQPPFNQIRPA--LRVLAQLIRSNDEKVLTDACRALAYLADGTNDK 231
           + A   L+    G P      I  A  + VL +L+ S D +V  +A RALA +A G ++ 
Sbjct: 20  KEAARDLAEIASG-PASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA 78
Query: 232 IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI 291
           I+A+++AG    LVKLL      V   A R + NI +G D   + I++ G +  L+ LL 
Sbjct: 79  IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT 138
Query: 292 HNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA 351
              ++ ++KE    ++NI +G  E I+A++DAG +  +V LL   +   +KEAA  ++N 
Sbjct: 139 STDSE-VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI 197
Query: 352 TSGGTHEQIKHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENI 394
            SG T   IK +V  G V+           ++       LENI
Sbjct: 198 ASGPTS-AIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENI 239

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  112 bits (280), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 66/169 (39%), Positives = 95/169 (56%), Gaps = 3/169 (1%)
Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
           L  + Q + S+D +    A R  + +    N++IQAVI+AG  P LV+LL   +  +L  
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQE 73
Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
           AL  + NI +G + Q Q +I+ GAL  L+ LL  + N+ I +E  W +SNI +G  EQIQ
Sbjct: 74  ALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQ 132
Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREG 367
           AVIDAG +  +V LL        +EA W +SN  SGG  +  K  V+E 
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ--KQAVKEA 179

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score =  104 bits (260), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 71/206 (34%), Positives = 103/206 (50%), Gaps = 14/206 (6%)
Query: 241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK 300
            P++ + L         +A R    I++  + Q Q +I+ GAL  L+ LL  + N+ I +
Sbjct: 14  LPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL-SSPNEQILQ 72
Query: 301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI 360
           E  W +SNI +G  EQIQAVIDAG +  +V LL        +EA W +SN  SGG +EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQI 131
Query: 361 KHLVREGCVKXXXXXXXXXXXQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           + ++  G +            QI+   L  L NI   G            N+  Q V+EA
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG------------NEQKQAVKEA 179
Query: 421 EGLEKIENLQSHDNNDIHEMSVKILE 446
             LEK+E LQSH+N  I + + + LE
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALE 205

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	482
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-176
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-48
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-38
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-169
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-45
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	2e-35
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-166
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-44
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-99
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-67
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-65
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	4e-62
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-55
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-48
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	6e-36
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-24
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-12
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-73
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-68
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-59
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-56
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-48
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	7e-30
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	3e-84
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-83
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-10
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-76
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-60
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-48
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	6e-45
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-11
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-75
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	1e-67
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-67
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	2e-55
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	7e-65
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-53
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-22
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-53
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-23
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-17
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	5e-16
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	4e-10
3nmz_A	458	APC variant protein; protein-protein complex, arma	9e-53
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-48
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-37
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-51
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	1e-21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-41
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	5e-33
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	3e-20
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-05
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	3e-36
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-34
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-19
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-13
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	2e-32
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	9e-19
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-18
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-05
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	7e-13
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	2e-06
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	8e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	4e-07
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-12
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-10
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-06
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	6e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-05
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-10
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	5e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	9e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-04
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	8e-10
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	9e-09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	1e-08
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	5e-08
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	1e-07
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	4e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	8e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	3e-07
1qgr_A	876	Protein (importin beta subunit); transport recepto	2e-04
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	9e-06
3grl_A	651	General vesicular transport factor P115; vesicle t	3e-05

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  502 bits (1293), Expect = e-176
 Identities = 239/424 (56%), Positives = 306/424 (72%), Gaps = 4/424 (0%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQ 86
           I   M+  ++S   + QL AT  FRK+LS + N PI++VI + GVV RFVEFL R++   
Sbjct: 21  ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCT 80

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           LQFE+A  LTNIASG S  T++ I  GAVPIF++LL+S  +DV+EQAVWALGN+AGDS+ 
Sbjct: 81  LQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTM 140

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQL 205
           CRD+VL    L PLL   ++  +L+M R A W LSN CRGK P P F ++ P L VL+ L
Sbjct: 141 CRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWL 200

Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
           +  +D  VL DAC AL+YL+DG NDKIQAVI+AGVC RLV+LL H    V++ ALR +GN
Sbjct: 201 LFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN 260

Query: 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
           IVTGDD QTQ I+NC AL+ LL LL  +  +SIKKE CW ISNITAGNR QIQ VIDA +
Sbjct: 261 IVTGDDIQTQVILNCSALQSLLHLL-SSPKESIKKEACWTISNITAGNRAQIQTVIDANI 319

Query: 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT 385
              ++++LQ AEF T+KEAAW I+NATSGG+ EQIK+LV  GC+KPLCDLL   D +IV 
Sbjct: 320 FPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQ 379

Query: 386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
           V L GLENIL++GE E   +  G +N Y  L+EEA GL+KIE LQSH+N +I++ +  ++
Sbjct: 380 VALNGLENILRLGEQEAKRNGTG-INPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLI 438

Query: 446 ETYW 449
           E Y+
Sbjct: 439 EHYF 442

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  172 bits (437), Expect = 1e-48
 Identities = 65/353 (18%), Positives = 130/353 (36%), Gaps = 18/353 (5%)

Query: 97  NIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA--GDSSRCRDFVLSQ 154
                   N ++A         ++++ S S + +  A      +     +    + + + 
Sbjct: 4   GFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTP 63

Query: 155 GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP-ALRVLAQLIRSNDEKV 213
           G +   +  L      ++   + W L+N   G        I+  A+ +  +L+ S  E V
Sbjct: 64  GVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123

Query: 214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL-VLTAALRTIGNIVTGDDF 272
              A  AL  +A  +      V++  + P L++L   ++RL +   A+  + N+  G   
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNL 332
             +       L  L  LL    +  +  + CW +S ++ G  ++IQAVIDAG+   +V L
Sbjct: 184 PPEFAKVSPCLNVLSWLL-FVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVEL 242

Query: 333 LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLE 392
           L   ++     A   + N  + G   Q + ++    ++ L  LL  P   I       + 
Sbjct: 243 LMHNDYKVVSPALRAVGNIVT-GDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS 301

Query: 393 NILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
           NI        N   I       Q V +A     + ++         + +   +
Sbjct: 302 NI-----TAGNRAQI-------QTVIDANIFPALISILQTAEFRTRKEAAWAI 342

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  144 bits (365), Expect = 2e-38
 Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 16/257 (6%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL 87
            L  +   ++  D  V  +A       LS   N  I+ VI +GV  R VE LM  D  ++
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSY-LSDGPNDKIQAVIDAGVCRRLVELLMHND-YKV 250

Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
              A RA+ NI +G    T+V ++  A+   + LL+SP + ++++A W + N+   +   
Sbjct: 251 VSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQ 310

Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPA--LRVLAQL 205
              V+    + P L  + + A+    + A W ++N   G        +     ++ L  L
Sbjct: 311 IQTVIDAN-IFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDL 369

Query: 206 IRSNDEKVLTDACRALAYLA-----------DGTNDKIQAVIEAGVCPRLVKLLGHRSRL 254
           +   D K++  A   L  +             G N     + EA    ++  L  H ++ 
Sbjct: 370 LTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQE 429

Query: 255 VLTAALRTIGNIVTGDD 271
           +   A   I +    +D
Sbjct: 430 IYQKAFDLIEHYFGTED 446

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  486 bits (1252), Expect = e-169
 Identities = 233/426 (54%), Positives = 300/426 (70%), Gaps = 6/426 (1%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
           + LP M   + SDD + QL AT  FR++LS +   PI+ VIQ+GVVPR VEF+       
Sbjct: 87  QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEM 146

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           LQ EAA ALTNIASGTS  TKV +D  AVP+F++LL + S +V+EQA+WALGNVAGDS+ 
Sbjct: 147 LQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTD 206

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQL 205
            RD+VL   A+ P+L   N + K S++RTATWTLSN CRGK PQP ++ +  AL  LA+L
Sbjct: 207 YRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKL 265

Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
           I S D + L DAC A++YL+DG  + IQAVI+  +  RLV+LL H S LV T ALR +GN
Sbjct: 266 IYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN 325

Query: 266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL 325
           IVTG+D QTQ +IN G L  L  LL     ++IKKE CW ISNITAGN EQIQAVIDA L
Sbjct: 326 IVTGNDLQTQVVINAGVLPALRLLLSS-PKENIKKEACWTISNITAGNTEQIQAVIDANL 384

Query: 326 IGPIVNLLQDAEFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPCPDPQI 383
           I P+V LL+ AE+ TKKEA W ISNA+SGG    + I++LV +GC+KPLCDLL   D +I
Sbjct: 385 IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI 444

Query: 384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK 443
           + V L  LENILK+GEA+K    +  +N+ A  +E+A G+EKI N Q ++N+ I+E + K
Sbjct: 445 IEVTLDALENILKMGEADKEARGLN-INENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503

Query: 444 ILETYW 449
           I+ETY+
Sbjct: 504 IIETYF 509

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  164 bits (417), Expect = 3e-45
 Identities = 67/363 (18%), Positives = 125/363 (34%), Gaps = 16/363 (4%)

Query: 85  PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GD 143
                 A     + +S +++    +     +P   + L S     +  A      +   +
Sbjct: 59  IPPTDGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSRE 118

Query: 144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI-RPALRVL 202
                D V+  G +  L+  + E+    +   A W L+N   G        +   A+ + 
Sbjct: 119 HRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF 178

Query: 203 AQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262
            QL+ +   +V   A  AL  +A  + D    V++      ++ L       ++  A  T
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID 322
           + N+  G   Q    +   AL  L  L+     +    + CW IS ++ G +E IQAVID
Sbjct: 239 LSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVID 297

Query: 323 AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ 382
             +   +V LL       +  A   + N  + G   Q + ++  G +  L  LL  P   
Sbjct: 298 VRIPKRLVELLSHESTLVQTPALRAVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKEN 356

Query: 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSV 442
           I       + NI                 +  Q V +A  +  +  L         + + 
Sbjct: 357 IKKEACWTISNIT------------AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEAC 404

Query: 443 KIL 445
             +
Sbjct: 405 WAI 407

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  137 bits (346), Expect = 2e-35
 Identities = 60/261 (22%), Positives = 112/261 (42%), Gaps = 20/261 (7%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
           + LPT+   ++S D +  ++A       LS      I+ VI   +  R VE L+  +   
Sbjct: 257 QALPTLAKLIYSMDTETLVDACWAISY-LSDGPQEAIQAVIDVRIPKRLVE-LLSHESTL 314

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           +Q  A RA+ NI +G    T+V I+ G +P    LL+SP ++++++A W + N+   ++ 
Sbjct: 315 VQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTE 374

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIR-----PALRV 201
               V+     IP L +L E A+    + A W +SN   G  Q P + IR       ++ 
Sbjct: 375 QIQAVIDANL-IPPLVKLLEVAEYKTKKEACWAISNASSGGLQRP-DIIRYLVSQGCIKP 432

Query: 202 LAQLIRSNDEKVLTDACRALAYLA-----------DGTNDKIQAVIEAGVCPRLVKLLGH 250
           L  L+   D +++     AL  +               N+    + +AG   ++     +
Sbjct: 433 LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN 492

Query: 251 RSRLVLTAALRTIGNIVTGDD 271
            +  +   A + I      ++
Sbjct: 493 ENDKIYEKAYKIIETYFGEEE 513

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  477 bits (1229), Expect = e-166
 Identities = 199/436 (45%), Positives = 281/436 (64%), Gaps = 12/436 (2%)

Query: 19  SLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEF 78
             N  +    +  +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV F
Sbjct: 49  GSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSF 108

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
           L + D   +QFE+A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALG
Sbjct: 109 LGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALG 168

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEH----AKLSMLRTATWTLSNFCRGK-PQPPFN 193
           N+AGD S  RD V+  GA+ PLLA L            LR  TWTLSN CR K P PP +
Sbjct: 169 NIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLD 228

Query: 194 QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSR 253
            +   L  L +L+  ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG    
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288

Query: 254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN 313
            ++T ALR IGNIVTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG 
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGR 347

Query: 314 REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLC 373
           ++QIQ V++ GL+  +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++PL 
Sbjct: 348 QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407

Query: 374 DLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD 433
           +LL   D +I+ V L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+
Sbjct: 408 NLLSAKDTKIIQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHE 461

Query: 434 NNDIHEMSVKILETYW 449
           N  +++ S+ ++E Y+
Sbjct: 462 NESVYKASLNLIEKYF 477

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  162 bits (410), Expect = 2e-44
 Identities = 70/362 (19%), Positives = 128/362 (35%), Gaps = 21/362 (5%)

Query: 97  NIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSSRCRDFVLSQG 155
           +  +     +     + +V   VK + S + + + QA  A   +   +     D ++  G
Sbjct: 41  DDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAG 100

Query: 156 ALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI-RPALRVLAQLIRSNDEKVL 214
            +   ++ L +     +   + W L+N   G  +     +   A+     L+ S    + 
Sbjct: 101 LIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHIS 160

Query: 215 TDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL-----VLTAALRTIGNIVTG 269
             A  AL  +A   +     VI+ G    L+ LL            L     T+ N+   
Sbjct: 161 EQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRN 220

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPI 329
            +           L  L+ LL H+++  +  + CW IS +T G  E+I+ V+  G++  +
Sbjct: 221 KNPAPPLDAVEQILPTLVRLL-HHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 330 VNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI 389
           V LL   E      A   I N  + GT EQ + ++  G +     LL  P   I      
Sbjct: 280 VKLLGATELPIVTPALRAIGNIVT-GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATW 338

Query: 390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW 449
            + NI          D I       Q V     +  +  + S  +    + +   +  Y 
Sbjct: 339 TMSNI-----TAGRQDQI-------QQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYT 386

Query: 450 CG 451
            G
Sbjct: 387 SG 388

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 38/194 (19%), Positives = 70/194 (36%), Gaps = 16/194 (8%)

Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ-I 317
            L T  +     D  +       ++  ++  +  N N   + +       + +  ++  I
Sbjct: 35  DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSN-NLESQLQATQAARKLLSREKQPPI 93

Query: 318 QAVIDAGLIGPIVNLLQDAEF-GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL 376
             +I AGLI   V+ L   +    + E+AW ++N  S GT EQ K +V  G +     LL
Sbjct: 94  DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIAS-GTSEQTKAVVDGGAIPAFISLL 152

Query: 377 PCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNND 436
             P   I    +  L NI             GD + +  LV +   ++ +  L +  +  
Sbjct: 153 ASPHAHISEQAVWALGNI------------AGDGSAFRDLVIKHGAIDPLLALLAVPDLS 200

Query: 437 IHEMSVKILETYWC 450
                     T+  
Sbjct: 201 TLACGYLRNLTWTL 214

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 55.0 bits (132), Expect = 3e-08
 Identities = 21/124 (16%), Positives = 45/124 (36%), Gaps = 7/124 (5%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
            ++P +V  +   D K Q EA        S      I  ++  G++   +  L  +D  +
Sbjct: 358 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD-TK 416

Query: 87  LQFEAARALTNIAS-----GTSENTKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNV 140
           +      A++NI       G +E   + I + G +     L    ++ V + ++  +   
Sbjct: 417 IIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKY 476

Query: 141 AGDS 144
               
Sbjct: 477 FSVE 480

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  311 bits (797), Expect = 2e-99
 Identities = 62/432 (14%), Positives = 135/432 (31%), Gaps = 19/432 (4%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
           +++  +V  + + ++      T      LS  R   +  + +SG +P  V+ L       
Sbjct: 56  QMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPV-DS 113

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           + F A   L N+              G +   V LL   +          L  +A  +  
Sbjct: 114 VLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE 173

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI 206
            +  +L+ G    L+  +  +    +L T +  L          P       ++ L   +
Sbjct: 174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHL 233

Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
               ++++ +    L  L+D    +       G+   LV+LLG     V+T A   + N+
Sbjct: 234 TDPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNL 290

Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNK-SIKKEVCWIISNITAGNRE---QIQAVID 322
              +      +   G +  L+  ++   ++  I +     + ++T+ ++E      AV  
Sbjct: 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRL 350

Query: 323 AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ 382
              +  +V LL         +A   +    +         L  +G +  L  LL      
Sbjct: 351 HYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQD 409

Query: 383 IVTVCLIGLENILKVGEAEKNT---------DNIGDVNQYAQLVEEAEGLEKIENLQSHD 433
                 +G      V                  +        ++     +     L    
Sbjct: 410 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 469

Query: 434 NNDIHEMSVKIL 445
             +I  ++  +L
Sbjct: 470 IENIQRVAAGVL 481

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  225 bits (576), Expect = 5e-67
 Identities = 71/460 (15%), Positives = 143/460 (31%), Gaps = 51/460 (11%)

Query: 18  LSLNLQSKFEI-----LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVV 72
           LS + +    I     +P +V  + S  + V   A T    +L     + +  V  +G +
Sbjct: 84  LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA-VRLAGGL 142

Query: 73  PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSD-DVRE 131
            + V  L+ +   +        L  +A G  E+  + +  G     V ++ + +   +  
Sbjct: 143 QKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 201

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
                L  ++  SS  +  ++  G  +  L          +++   WTL N      +  
Sbjct: 202 TTSRVLKVLSVCSS-NKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 259

Query: 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL--G 249
              +   L  L QL+ S+D  V+T A   L+ L          V + G    LV+ +   
Sbjct: 260 --GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317

Query: 250 HRSRLVLTAALRTIGNIVTGDD---FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
                +   A+  + ++ +           +     L  ++ LL    +  + K    +I
Sbjct: 318 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 377

Query: 307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG----------- 355
            N+ A        + + G I  +V LL  A   T++  +   +                 
Sbjct: 378 RNL-ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 436

Query: 356 ---------THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDN 406
                           +     +     LL  P   I  V    L  + +  E       
Sbjct: 437 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE------- 489

Query: 407 IGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
                  A+ +E       +  L    N  +   +  +L 
Sbjct: 490 ------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLF 523

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  221 bits (564), Expect = 3e-65
 Identities = 82/415 (19%), Positives = 146/415 (35%), Gaps = 26/415 (6%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           +P +   +  +D  V  +A  +  + LS    S    +    +V   V  +   +  +  
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 74

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
              A  L N+ S   E        G +P  VK+L SP D V   A+  L N+       +
Sbjct: 75  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 133

Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP-ALRVLAQLIR 207
             V   G  +  +  L     +  L   T  L     G  +     +     + L  ++R
Sbjct: 134 MAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 192

Query: 208 S-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
           +   EK+L    R L  L+  +++K  A++EAG    L   L   S+ ++   L T+ N+
Sbjct: 193 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 251

Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
               D  T+     G L  L+ LL  + + ++      I+SN+T  N +    V   G I
Sbjct: 252 ---SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 327 GPIVNLLQDA--EFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPCPDPQ 382
             +V  +  A       + A   + + TS           +     +  +  LL  P   
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
            +    +GL   L +        N          + E   + ++  L    + D 
Sbjct: 368 PLIKATVGLIRNLAL-----CPANH-------APLREQGAIPRLVQLLVRAHQDT 410

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  212 bits (542), Expect = 4e-62
 Identities = 61/387 (15%), Positives = 130/387 (33%), Gaps = 21/387 (5%)

Query: 60  NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119
           N   +  + +  +P   + L  ED   +  +AA  +  ++   +    +      V   V
Sbjct: 4   NYQDDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62

Query: 120 KLLASPSD-DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178
           + + + +D +        L N++         +   G  IP L ++      S+L  A  
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGG-IPALVKMLGSPVDSVLFYAIT 120

Query: 179 TLSNFCRGKPQPPFNQIRP-ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE 237
           TL N    +            L+ +  L+   + K L      L  LA G  +    ++ 
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 180

Query: 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS 297
           +G    LV ++   +   L      +  +++        I+  G ++ L   L    ++ 
Sbjct: 181 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQR 239

Query: 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH 357
           + +   W + N++    +Q       GL+G +V LL   +      AA ++SN T     
Sbjct: 240 LVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY- 295

Query: 358 EQIKHLVREGCVKPLCDLL--PCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQ 415
           +    + + G ++ L   +        I    +  L ++         T    +      
Sbjct: 296 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL---------TSRHQEAEMAQN 346

Query: 416 LVEEAEGLEKIENLQSHDNNDIHEMSV 442
            V    GL  +  L    ++     + 
Sbjct: 347 AVRLHYGLPVVVKLLHPPSHWPLIKAT 373

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  193 bits (491), Expect = 7e-55
 Identities = 60/344 (17%), Positives = 115/344 (33%), Gaps = 19/344 (5%)

Query: 104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAE 163
                 +   A+P   KLL      V  +A   +  ++   +     + S   +  ++  
Sbjct: 5   YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRT 64

Query: 164 LNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY 223
           +     +   R    TL N    +           +  L +++ S  + VL  A   L  
Sbjct: 65  MQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN 124

Query: 224 LADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGAL 283
           L         AV  AG   ++V LL   +   L      +  +  G+      I+  G  
Sbjct: 125 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGP 184

Query: 284 RYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE 343
           + L+ ++     + +      ++  + +       A+++AG +  +   L D      + 
Sbjct: 185 QALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQN 243

Query: 344 AAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKN 403
             W + N +   T    K    EG +  L  LL   D  +VT     L N+        N
Sbjct: 244 CLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNL-----TCNN 294

Query: 404 TDNIGDVNQYAQLVEEAEGLEKIENL--QSHDNNDIHEMSVKIL 445
             N         +V +  G+E +     ++ D  DI E ++  L
Sbjct: 295 YKNK-------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 331

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  173 bits (441), Expect = 6e-48
 Identities = 58/356 (16%), Positives = 114/356 (32%), Gaps = 36/356 (10%)

Query: 38  SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN 97
               K+    + + + +     N     ++++G +      L      +L       L N
Sbjct: 194 YTYEKLLWTTSRVLKVLSVCSSN--KPAIVEAGGMQALGLHLTDPS-QRLVQNCLWTLRN 250

Query: 98  IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGAL 157
           ++      TK     G +   V+LL S   +V   A   L N+  ++ + +  V   G +
Sbjct: 251 LSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307

Query: 158 IPLLAEL-NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP----ALRVLAQLIRSNDEK 212
             L+  +     +  +   A   L +      +    Q        L V+ +L+      
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367

Query: 213 VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL----------------------GH 250
            L  A   L             + E G  PRLV+LL                      G 
Sbjct: 368 PLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGV 427

Query: 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310
           R   ++      +  +          I     +   + LL ++  ++I++    ++  + 
Sbjct: 428 RMEEIVEGCTGALHILARDVH-NRIVIRGLNTIPLFVQLL-YSPIENIQRVAAGVLCEL- 484

Query: 311 AGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE 366
           A ++E  +A+   G   P+  LL     G    AA V+   +     +  K L  E
Sbjct: 485 AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE 540

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  140 bits (353), Expect = 6e-36
 Identities = 59/327 (18%), Positives = 105/327 (32%), Gaps = 31/327 (9%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL-MREDYPQ 86
           +L T+V  + SDD  V   A  +    L+ +       V Q G +   V  +    D   
Sbjct: 264 LLGTLVQLLGSDDINVVTCAAGILSN-LTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 322

Query: 87  LQFEAARALTNIASGTSENTKVA---IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
           +   A  AL ++ S   E          H  +P+ VKLL  PS     +A   L      
Sbjct: 323 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 382

Query: 144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLA 203
                  +  QGA IP L +L   A     R  +   +                      
Sbjct: 383 CPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQ-------------------QQ 422

Query: 204 QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263
            +     E+++     AL  LA   +++   +      P  V+LL      +   A   +
Sbjct: 423 FVEGVRMEEIVEGCTGALHILARDVHNR-IVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 481

Query: 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA 323
             +    +   + I   GA   L  LL H+ N+ +      ++  ++    +  +  +  
Sbjct: 482 CELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV 539

Query: 324 GLIGPIVNLLQDAEFGTKKEAAWVISN 350
            L     +L +       + A   +  
Sbjct: 540 EL---TSSLFRTEPMAWNETADLGLDI 563

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  105 bits (264), Expect = 2e-24
 Identities = 31/219 (14%), Positives = 84/219 (38%), Gaps = 17/219 (7%)

Query: 229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLG 288
           N +  A +     P L KLL    ++V+  A   +  +   +  +   + +   +  ++ 
Sbjct: 4   NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 63

Query: 289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVI 348
            + + ++    +     + N+ + +RE + A+  +G I  +V +L          A   +
Sbjct: 64  TMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTL 122

Query: 349 SNATSGGTHEQIKHLVRE-GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNI 407
            N       E  K  VR  G ++ +  LL   + + + +    L+ +     A  N ++ 
Sbjct: 123 HNLLLH--QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL-----AYGNQESK 175

Query: 408 GDVNQYAQLVEEAEGLEK-IENLQSHDNNDIHEMSVKIL 445
                   ++  + G +  +  ++++    +   + ++L
Sbjct: 176 -------LIILASGGPQALVNIMRTYTYEKLLWTTSRVL 207

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 69.2 bits (169), Expect = 1e-12
 Identities = 29/148 (19%), Positives = 47/148 (31%), Gaps = 8/148 (5%)

Query: 43  VQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT 102
           +    T     +     N  +  +     +P FV+ L+      +Q  AA  L  +A   
Sbjct: 432 IVEGCTGALHILARDVHNRIV--IRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-D 487

Query: 103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLA 162
            E  +     GA     +LL S ++ V   A   L  ++ D  +     LS      L  
Sbjct: 488 KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 547

Query: 163 ELNEHAKLSMLRTATWTLSNFCRGKPQP 190
                       TA   L    +G+P  
Sbjct: 548 TEPMAWN----ETADLGLDIGAQGEPLG 571

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  305 bits (784), Expect = 1e-98
 Identities = 62/431 (14%), Positives = 133/431 (30%), Gaps = 19/431 (4%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL 87
           ++  +V  + + ++      T      LS  R   +  + +SG +P  V+ L       +
Sbjct: 60  MVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGGIPALVKMLGSPV-DSV 117

Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
            F A   L N+              G +   V LL   +          L  +A  +   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR 207
           +  +L+ G    L+  +  +    +L T +  L          P       ++ L   + 
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT 237

Query: 208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV 267
              ++++ +    L  L+D    +       G+   LV+LLG     V+T A   + N+ 
Sbjct: 238 DPSQRLVQNCLWTLRNLSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

Query: 268 TGDDFQTQCIINCGALRYLLGLLIHNH-NKSIKKEVCWIISNITAGNRE---QIQAVIDA 323
             +      +   G +  L+  ++     + I +     + ++T+ ++E      AV   
Sbjct: 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLH 354

Query: 324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI 383
             +  +V LL         +A   +    +         L  +G +  L  LL       
Sbjct: 355 YGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQDT 413

Query: 384 VTVCLIGLENILKVGEAEKNTD---------NIGDVNQYAQLVEEAEGLEKIENLQSHDN 434
                +G      V                  +        ++     +     L     
Sbjct: 414 QRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPI 473

Query: 435 NDIHEMSVKIL 445
            +I  ++  +L
Sbjct: 474 ENIQRVAAGVL 484

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  240 bits (613), Expect = 2e-73
 Identities = 82/415 (19%), Positives = 146/415 (35%), Gaps = 26/415 (6%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           +P +   +  +D  V  +A  +  + LS    S    +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
              A  L N+ S   E        G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP-ALRVLAQLIR 207
             V   G  +  +  L     +  L   T  L     G  +     +     + L  ++R
Sbjct: 137 MAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMR 195

Query: 208 S-NDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
           +   EK+L    R L  L+  +++K  A++EAG    L   L   S+ ++   L T+ N+
Sbjct: 196 TYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
               D  T+     G L  L+ LL  + + ++      I+SN+T  N +    V   G I
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310

Query: 327 GPIVNLLQDA--EFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPCPDPQ 382
             +V  +  A       + A   + + TS           +     +  +  LL  P   
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370

Query: 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
            +    +GL   L +  A                + E   + ++  L    + D 
Sbjct: 371 PLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDT 413

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  226 bits (577), Expect = 4e-68
 Identities = 69/459 (15%), Positives = 140/459 (30%), Gaps = 51/459 (11%)

Query: 18  LSLNLQSKFEI-----LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVV 72
           LS + +    I     +P +V  + S  + V   A T    +L     + +  V  +G +
Sbjct: 87  LSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA-VRLAGGL 145

Query: 73  PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSD-DVRE 131
            + V  L+ +   +        L  +A G  E+  + +  G     V ++ + +   +  
Sbjct: 146 QKMVA-LLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLW 204

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
                L  ++  SS  +  ++  G  +  L          +++   WTL N      +  
Sbjct: 205 TTSRVLKVLSVCSS-NKPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE 262

Query: 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL--G 249
              +   L  L QL+ S+D  V+T A   L+ L          V + G    LV+ +   
Sbjct: 263 --GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA 320

Query: 250 HRSRLVLTAALRTIGNIVTGDDF---QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII 306
                +   A+  + ++ +           +     L  ++ LL H  +     +    +
Sbjct: 321 GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLL-HPPSHWPLIKATVGL 379

Query: 307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG----------- 355
               A        + + G I  +V LL  A   T++  +   +                 
Sbjct: 380 IRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGC 439

Query: 356 ---------THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDN 406
                           +     +     LL  P   I  V    L  + +  E       
Sbjct: 440 TGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKE------- 492

Query: 407 IGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
                  A+ +E       +  L    N  +   +  +L
Sbjct: 493 ------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  201 bits (514), Expect = 5e-59
 Identities = 62/354 (17%), Positives = 120/354 (33%), Gaps = 22/354 (6%)

Query: 94  ALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS 153
           A+ N+ +         +   A+P   KLL      V  +A   +  ++   +     + S
Sbjct: 1   AVVNLIN---YQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 154 QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKV 213
              +  ++  +     +   R    TL N    +           +  L +++ S  + V
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ 273
           L  A   L  L         AV  AG   ++V LL   +   L      +  +  G+   
Sbjct: 118 LFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQES 177

Query: 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL 333
              I+  G  + L+ ++     + +      ++  + +       A+++AG +  +   L
Sbjct: 178 KLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHL 236

Query: 334 QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLEN 393
            D      +   W + N +   T    K    EG +  L  LL   D  +VT     L N
Sbjct: 237 TDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSN 292

Query: 394 ILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL--QSHDNNDIHEMSVKIL 445
           +        N  N         +V +  G+E +     ++ D  DI E ++  L
Sbjct: 293 L-----TCNNYKNK-------MMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  193 bits (493), Expect = 5e-56
 Identities = 62/391 (15%), Positives = 135/391 (34%), Gaps = 22/391 (5%)

Query: 60  NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV 119
           N   +  + +  +P   + L  ED   +  +AA  +  ++   +    +      V   V
Sbjct: 7   NYQDDAELATRAIPELTKLLNDED-QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65

Query: 120 KLLASPSD-DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178
           + + + +D +        L N++         +   G  IP L ++      S+L  A  
Sbjct: 66  RTMQNTNDVETARCTAGTLHNLSHHRE-GLLAIFKSGG-IPALVKMLGSPVDSVLFYAIT 123

Query: 179 TLSNFCRGKPQPPFNQIRP-ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE 237
           TL N    +            L+ +  L+   + K L      L  LA G  +    ++ 
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA 183

Query: 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS 297
           +G    LV ++   +   L      +  +++        I+  G ++ L   L    ++ 
Sbjct: 184 SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-PSQR 242

Query: 298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH 357
           + +   W + N++    +Q       GL+G +V LL   +      AA ++SN T     
Sbjct: 243 LVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY- 298

Query: 358 EQIKHLVREGCVKPLCDLL--PCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQ 415
           +    + + G ++ L   +        I    +  L ++         T    +      
Sbjct: 299 KNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL---------TSRHQEAEMAQN 349

Query: 416 LVEEAEGLEK-IENLQSHDNNDIHEMSVKIL 445
            V    GL   ++ L    +  + + +V ++
Sbjct: 350 AVRLHYGLPVVVKLLHPPSHWPLIKATVGLI 380

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  173 bits (441), Expect = 1e-48
 Identities = 63/372 (16%), Positives = 117/372 (31%), Gaps = 34/372 (9%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL 87
               +V  + +   +  L  T+   K+LS   +S    ++++G +       + +   +L
Sbjct: 186 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGL-HLTDPSQRL 243

Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
                  L N++      TK     G +   V+LL S   +V   A   L N+  ++ + 
Sbjct: 244 VQNCLWTLRNLSD---AATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300

Query: 148 RDFVLSQGALIPLLAEL-NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIR----PALRVL 202
           +  V   G +  L+  +     +  +   A   L +      +    Q        L V+
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360

Query: 203 AQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262
            +L+       L  A   L             + E G  PRLV+LL    +         
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420

Query: 263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID 322
                  +  + + I+                      E C    +I A +      +  
Sbjct: 421 GTQQQFVEGVRMEEIV----------------------EGCTGALHILARDVHNRIVIRG 458

Query: 323 AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ 382
              I   V LL       ++ AA V+         E  + +  EG   PL +LL   +  
Sbjct: 459 LNTIPLFVQLLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEG 516

Query: 383 IVTVCLIGLENI 394
           + T     L  +
Sbjct: 517 VATYAAAVLFRM 528

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  121 bits (305), Expect = 7e-30
 Identities = 54/287 (18%), Positives = 90/287 (31%), Gaps = 28/287 (9%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFL-MREDYPQ 86
           +L T+V  + SDD  V   A  +    L+ +       V Q G +   V  +    D   
Sbjct: 267 LLGTLVQLLGSDDINVVTCAAGILSN-LTCNNYKNKMMVCQVGGIEALVRTVLRAGDRED 325

Query: 87  LQFEAARALTNIASGTSENTKVA---IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD 143
           +   A  AL ++ S   E          H  +P+ VKLL  PS     +A   L      
Sbjct: 326 ITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL 385

Query: 144 SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLA 203
                  +  QGA IP L +L   A     R  +   +     +       +      L 
Sbjct: 386 CPANHAPLREQGA-IPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 444

Query: 204 QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263
            L R    ++                     +      P  V+LL      +   A   +
Sbjct: 445 ILARDVHNRI--------------------VIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

Query: 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310
             +    +   + I   GA   L  LL H+ N+ +      ++  ++
Sbjct: 485 CELAQDKEAA-EAIEAEGATAPLTELL-HSRNEGVATYAAAVLFRMS 529

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  259 bits (663), Expect = 3e-84
 Identities = 94/249 (37%), Positives = 135/249 (54%), Gaps = 14/249 (5%)

Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
            L  + Q + S+D +    A R  + +    N++IQAVI+AG  P LV+LL   +  +L 
Sbjct: 13  ELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
            AL  + NI +G + Q Q +I+ GAL  L+ LL  + N+ I +E  W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377
           QAVIDAG +  +V LL        +EA W +SN  SGG +EQI+ ++  G +  L  LL 
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLS 190

Query: 378 CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
            P+ QI+   L  L NI   G             +  Q V+EA  LEK+E LQSH+N  I
Sbjct: 191 SPNEQILQEALWALSNIASGGN------------EQKQAVKEAGALEKLEQLQSHENEKI 238

Query: 438 HEMSVKILE 446
            + + + LE
Sbjct: 239 QKEAQEALE 247

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  255 bits (654), Expect = 6e-83
 Identities = 87/243 (35%), Positives = 133/243 (54%), Gaps = 4/243 (1%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
             LP M   + SDD + QL AT  F ++LS D N  I+ VI +G +P  V+ L   +  Q
Sbjct: 12  SELPQMTQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQ 69

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           +  EA  AL+NIASG +E  +  ID GA+P  V+LL+SP++ + ++A+WAL N+A   + 
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIR-PALRVLAQL 205
               V+  GA +P L +L       +L+ A W LSN   G  +     I   AL  L QL
Sbjct: 130 QIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 188

Query: 206 IRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN 265
           + S +E++L +A  AL+ +A G N++ QAV EAG   +L +L  H +  +   A   +  
Sbjct: 189 LSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248

Query: 266 IVT 268
           + +
Sbjct: 249 LQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 59.2 bits (144), Expect = 4e-10
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 13/132 (9%)

Query: 314 REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLC 373
           R           +  +   L   +   +  A    S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALV 60

Query: 374 DLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD 433
            LL  P+ QI+   L  L NI     A    +         Q V +A  L  +  L S  
Sbjct: 61  QLLSSPNEQILQEALWALSNI-----ASGGNEQ-------IQAVIDAGALPALVQLLSSP 108

Query: 434 NNDIHEMSVKIL 445
           N  I + ++  L
Sbjct: 109 NEQILQEALWAL 120

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  236 bits (604), Expect = 6e-76
 Identities = 75/197 (38%), Positives = 110/197 (55%), Gaps = 2/197 (1%)

Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT 257
            L  + Q + S D++ L  A R L+ +A G N++IQAVI+AG  P LV+LL   +  +L 
Sbjct: 13  ELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
            AL  + NI +G + Q Q +I+ GAL  L+ LL  + N+ I +E  W +SNI +G  EQI
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQI 131

Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377
           QAVIDAG +  +V LL        +EA W +SN  SGG +EQ + +   G ++ L  L  
Sbjct: 132 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQS 190

Query: 378 CPDPQIVTVCLIGLENI 394
             + +I       LE +
Sbjct: 191 HENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  195 bits (498), Expect = 4e-60
 Identities = 77/216 (35%), Positives = 110/216 (50%), Gaps = 14/216 (6%)

Query: 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292
                    P++V+ L    +  L +ALR +  I +G + Q Q +I+ GAL  L+ LL  
Sbjct: 6   HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65

Query: 293 NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352
             N+ I +E  W +SNI +G  EQIQAVIDAG +  +V LL        +EA W +SN  
Sbjct: 66  P-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA 124

Query: 353 SGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ 412
           S G +EQI+ ++  G +  L  LL  P+ QI+   L  L NI   G             +
Sbjct: 125 S-GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN------------E 171

Query: 413 YAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY 448
             Q V+EA  LEK+E LQSH+N  I + + + LE  
Sbjct: 172 QKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL 207

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  164 bits (417), Expect = 3e-48
 Identities = 68/210 (32%), Positives = 107/210 (50%), Gaps = 11/210 (5%)

Query: 64  EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA 123
                   +P+ V+ L   D  Q    A R L+ IASG +E  +  ID GA+P  V+LL+
Sbjct: 6   HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64

Query: 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
           SP++ + ++A+WAL N+A   +     V+  GA +P L +L       +L+ A W LSN 
Sbjct: 65  SPNEQILQEALWALSNIASGGNEQIQAVIDAGA-LPALVQLLSSPNEQILQEALWALSNI 123

Query: 184 CRGKPQPPFNQIRP-----ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
             G       QI+      AL  L QL+ S +E++L +A  AL+ +A G N++ QAV EA
Sbjct: 124 ASGGN----EQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 179

Query: 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
           G   +L +L  H +  +   A   +  + +
Sbjct: 180 GALEKLEQLQSHENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  155 bits (394), Expect = 6e-45
 Identities = 70/241 (29%), Positives = 106/241 (43%), Gaps = 43/241 (17%)

Query: 113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSM 172
             +P  V+ L SP     + A+  L  +A   +     V+  GAL               
Sbjct: 12  SELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGAL--------------- 56

Query: 173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKI 232
                                        L QL+ S +E++L +A  AL+ +A G N++I
Sbjct: 57  ---------------------------PALVQLLSSPNEQILQEALWALSNIASGGNEQI 89

Query: 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292
           QAVI+AG  P LV+LL   +  +L  AL  + NI +G + Q Q +I+ GAL  L+ LL  
Sbjct: 90  QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS 149

Query: 293 NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352
            + + I +E  W +SNI +G  EQ QAV +AG +  +  L        +KEA   +    
Sbjct: 150 PNEQ-ILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ 208

Query: 353 S 353
           S
Sbjct: 209 S 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 61.5 bits (150), Expect = 4e-11
 Identities = 32/132 (24%), Positives = 49/132 (37%), Gaps = 13/132 (9%)

Query: 314 REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLC 373
           R           +  +V  L   +    + A   +S   S G +EQI+ ++  G +  L 
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALV 60

Query: 374 DLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD 433
            LL  P+ QI+   L  L NI             G   Q  Q V +A  L  +  L S  
Sbjct: 61  QLLSSPNEQILQEALWALSNIA-----------SGGNEQ-IQAVIDAGALPALVQLLSSP 108

Query: 434 NNDIHEMSVKIL 445
           N  I + ++  L
Sbjct: 109 NEQILQEALWAL 120

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  250 bits (639), Expect = 4e-75
 Identities = 73/415 (17%), Positives = 138/415 (33%), Gaps = 24/415 (5%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL 87
            +P +   +  +D  V  +A  +  + LS    S    +    +V   V  +   +  + 
Sbjct: 151 AIPELTKLLNDEDQVVVNKAAVMVHQ-LSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 209

Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
               +  L N++    E        G +P  V +L SP D V   A+  L N+       
Sbjct: 210 ARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGA 268

Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP-ALRVLAQLI 206
           +  V   G  +  +  L     +  L   T  L     G  +     +     + L  ++
Sbjct: 269 KMAVRLAGG-LQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 327

Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
           R+   + L      +  +    +    A++EAG    L   L   S+ ++   L T+ N+
Sbjct: 328 RTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL 387

Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
               D  T+     G L  L+ LL  + + ++      I+SN+T  N +    V   G I
Sbjct: 388 ---SDAATKQEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 443

Query: 327 GPIVNLLQDA--EFGTKKEAAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPCPDPQ 382
             +V  +  A       + A   + + TS           +     +  +  LL  P   
Sbjct: 444 EALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW 503

Query: 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
            +    +GL   L +  A                + E   + ++  L    + D 
Sbjct: 504 PLIKATVGLIRNLALCPANH------------APLREQGAIPRLVQLLVRAHQDT 546

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  230 bits (587), Expect = 1e-67
 Identities = 71/421 (16%), Positives = 133/421 (31%), Gaps = 26/421 (6%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYP-QL 87
                      D   Q   T   R      R +   + +  G+     +F        Q 
Sbjct: 69  FNQSFNQEQVADIDGQYAMTRAQR-----VRAAMFPETLDEGMQIPSTQFDSAHPTNVQR 123

Query: 88  QFEAARALTNIASGTSENTKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
             E ++ L +           A     A+P   KLL      V  +A   +  ++   + 
Sbjct: 124 LAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEAS 183

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI 206
               + S   +  ++  +     +   R  + TL N    +           +  L  ++
Sbjct: 184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNML 243

Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
            S  + VL  A   L  L         AV  AG   ++V LL   +   L      +  +
Sbjct: 244 GSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL 303

Query: 267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI 326
             G+      I+  G  + L+ ++     + +      ++  + +       A+++AG +
Sbjct: 304 AYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGM 362

Query: 327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTV 386
             +   L D      +   W + N +   T    K    EG +  L  LL   D  +VT 
Sbjct: 363 QALGLHLTDPSQRLVQNCLWTLRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTC 418

Query: 387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL--QSHDNNDIHEMSVKI 444
               L N+        N  N         +V +  G+E +     ++ D  DI E ++  
Sbjct: 419 AAGILSNL-----TCNNYKNK-------MMVCQVGGIEALVRTVLRAGDREDITEPAICA 466

Query: 445 L 445
           L
Sbjct: 467 L 467

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  228 bits (583), Expect = 5e-67
 Identities = 69/446 (15%), Positives = 138/446 (30%), Gaps = 46/446 (10%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           +P +V  + S  + V   A T     L   +      V  +G + + V  L + +  +  
Sbjct: 236 IPALVNMLGSPVDSVLFHAITTLHN-LLLHQEGAKMAVRLAGGLQKMVALLNKTN-VKFL 293

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD-VREQAVWALGNVAGDSSRC 147
                 L  +A G  E+  + +  G     V ++ + + + +       L  ++  SS  
Sbjct: 294 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS-N 352

Query: 148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR 207
           +  ++  G  +  L          +++   WTL N      +     +   L  L QL+ 
Sbjct: 353 KPAIVEAGG-MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GMEGLLGTLVQLLG 409

Query: 208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL--GHRSRLVLTAALRTIGN 265
           S+D  V+T A   L+ L          V + G    LV+ +        +   A+  + +
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 266 IVTGDD---FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID 322
           + +           +     L  ++ LL    +  + K    +I N+ A        + +
Sbjct: 470 LTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL-ALCPANHAPLRE 528

Query: 323 AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG--------------------THEQIKH 362
            G I  +V LL  A   T++  +   +                                 
Sbjct: 529 QGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIV 588

Query: 363 LVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEG 422
           +     +     LL  P   I  V    L  + +  EA             A+ +E    
Sbjct: 589 IRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-------------AEAIEAEGA 635

Query: 423 LEKIENLQSHDNNDIHEMSVKILETY 448
              +  L    N  +   +  +L   
Sbjct: 636 TAPLTELLHSRNEGVATYAAAVLFRM 661

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  196 bits (500), Expect = 2e-55
 Identities = 70/438 (15%), Positives = 135/438 (30%), Gaps = 35/438 (7%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQL 87
               +V  + +   +  L  T+   K+LS   +S    ++++G +      L      +L
Sbjct: 319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPS-QRL 376

Query: 88  QFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC 147
                  L N++      TK     G +   V+LL S   +V   A   L N+  ++ + 
Sbjct: 377 VQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 433

Query: 148 RDFVLSQGALIPLLAEL-NEHAKLSMLRTATWTLSNFCRGKPQPPFNQ----IRPALRVL 202
           +  V   G +  L+  +     +  +   A   L +           Q    +   L V+
Sbjct: 434 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVV 493

Query: 203 AQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT 262
            +L+       L  A   L             + E G  PRLV+LL    +         
Sbjct: 494 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 553

Query: 263 IGNIVTGDDFQT---------------------QCIINCGALRYLLGLLIHNHNKSIKKE 301
                  +  +                        I     +   + LL ++  ++I++ 
Sbjct: 554 GTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLL-YSPIENIQRV 612

Query: 302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK 361
              ++  + A ++E  +A+   G   P+  LL     G    AA V+   +     +  K
Sbjct: 613 AAGVLCEL-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKK 671

Query: 362 HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEK-NTDNIGDVNQYAQLVEEA 420
            L  E     L    P    +   + L        +G  +   +        Y Q     
Sbjct: 672 RLSVE-LTSSLFRTEPMTWNETGDLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQDAMGM 730

Query: 421 EGLEKIENLQSHDNNDIH 438
           + + + E    H   D  
Sbjct: 731 DPMMEHEMAGHHPGPDYP 748

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  212 bits (542), Expect = 7e-65
 Identities = 54/316 (17%), Positives = 103/316 (32%), Gaps = 25/316 (7%)

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSD----------- 127
            M          A   L  + S   E+     + G +    +LL    +           
Sbjct: 40  PMPAPVEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSI 98

Query: 128 DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187
            +R  A  AL N+       +  + S    +  L    +     + +     L N     
Sbjct: 99  TLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRA 158

Query: 188 PQPPFNQIR--PALRVLAQLIR-SNDEKVLTDACRALAYLA-DGTNDKIQAVIEAGVCPR 243
                  +R   +++ L +       E  L     AL  L+   T +K       G    
Sbjct: 159 DVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAF 218

Query: 244 LVKLLGHRS-------RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK 296
           LV  L +RS              LR + +++  ++   Q +     L+ LL  L  +H+ 
Sbjct: 219 LVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSL 277

Query: 297 SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG- 355
           +I    C  + N++A N +  +A+ D G +  + NL+          +A  + N  +   
Sbjct: 278 TIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 337

Query: 356 THEQIKHLVREGCVKP 371
              +  +++  G   P
Sbjct: 338 AKYKDANIMSPGSSLP 353

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  183 bits (466), Expect = 1e-53
 Identities = 57/343 (16%), Positives = 116/343 (33%), Gaps = 26/343 (7%)

Query: 88  QFEAARALTNIASGTSENTKVAI-DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
                  L  I +      +        +      + +P +     AV  L  ++ D   
Sbjct: 6   HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE- 64

Query: 147 CRDFVLSQGALIPLLAEL-----------NEHAKLSMLRTATWTLSNFCRGKPQ--PPFN 193
            R  +   G  +  +AEL           N+H  +++ R A   L+N   G         
Sbjct: 65  HRHAMNELGG-LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC 123

Query: 194 QIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVI-EAGVCPRLVKLLGHRS 252
            ++  +R L   ++S  E +       L  L+   +   +  + E G    L++      
Sbjct: 124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK 183

Query: 253 RL-VLTAALRTIGNI-VTGDDFQTQCIINCGALRYLLGLLIHNHNKS---IKKEVCWIIS 307
           +   L + L  + N+     + +       GAL +L+G L +    +   I +    I+ 
Sbjct: 184 KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILR 243

Query: 308 NIT---AGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLV 364
           N++   A N +  Q + +   +  ++  L+         A   + N ++    +  + L 
Sbjct: 244 NVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSA-RNPKDQEALW 302

Query: 365 REGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNI 407
             G V  L +L+      I       L N++    A+    NI
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANI 345

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 97.6 bits (243), Expect = 2e-22
 Identities = 47/229 (20%), Positives = 84/229 (36%), Gaps = 20/229 (8%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQ 86
            +  +VA + S+   +Q    ++ R  LS+  +   +K + + G V   +E  +      
Sbjct: 128 CMRALVAQLKSESEDLQQVIASVLRN-LSWRADVNSKKTLREVGSVKALMECALEVKKES 186

Query: 87  LQFEAARALTNIASGTSEN-TKVAIDHGAVPIFVKLLASPSDD----VREQAVWALGNVA 141
                  AL N+++  +EN   +    GA+   V  L   S      + E     L NV+
Sbjct: 187 TLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVS 246

Query: 142 G---DSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP- 197
                +   R  +     L  LL  L +   L+++  A  TL N     P+   +Q    
Sbjct: 247 SLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWNLSARNPK---DQEALW 302

Query: 198 ---ALRVLAQLIRSNDEKVLTDACRALAYLADG--TNDKIQAVIEAGVC 241
              A+ +L  LI S  + +   +  AL  L        K   ++  G  
Sbjct: 303 DMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSS 351

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  185 bits (471), Expect = 1e-53
 Identities = 57/395 (14%), Positives = 114/395 (28%), Gaps = 36/395 (9%)

Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
           +P+ V++L  +D  + Q   A  + +         +     G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
            A  AL N+   S+  +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 192 FNQIRPALRVLAQLI----------------RSNDEKVLTDACRALAYLADGTNDKIQAV 235
              I  AL VLA  +                   D +V  +A   L  L+     +    
Sbjct: 123 -ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMR 181

Query: 236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN 295
             +G+   L+  + +               +    +   +           L     N  
Sbjct: 182 NYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY 241

Query: 296 KSIKKEVCWIISNITAGNREQIQA-------------VIDAGLIGPIVNLLQDAEFGTKK 342
                  C+   +    N                   +  +  I   +NL+  ++     
Sbjct: 242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 343 EAA-WVISNATSG----GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397
           EA    + N T+      +       ++E  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH 432
               +   N         L          E++ S 
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS 396

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  101 bits (251), Expect = 3e-23
 Identities = 44/361 (12%), Positives = 102/361 (28%), Gaps = 40/361 (11%)

Query: 28  ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP----------IEKVI--QSGVVPRF 75
           I   +     + + ++Q + T L   + S D               ++VI   SG     
Sbjct: 88  IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGN 147

Query: 76  VEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVW 135
                    P++ F A   L N++S  +    +    G +   +  + +     R     
Sbjct: 148 SNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKS 207

Query: 136 ALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG--------- 186
               +    +               L     +A      T  ++  +             
Sbjct: 208 VENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLP 267

Query: 187 ------KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK-----IQAV 235
                 K              L  + +S  +  L     AL  L                
Sbjct: 268 EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIG 327

Query: 236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN 295
           ++    P++ +LL   +  V+ +    + N+          ++       +  LL  +  
Sbjct: 328 LKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTG 385

Query: 296 KSIKKE-----VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF-GTKKEAAWVIS 349
            +   E      C+ + N+ A   +  +    + ++  I+NL + +      + A  ++S
Sbjct: 386 NTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLS 445

Query: 350 N 350
           +
Sbjct: 446 D 446

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 83.0 bits (204), Expect = 3e-17
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 20/248 (8%)

Query: 197 PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVL 256
             +    Q + S DEK        + +         Q V + G   +LV LL   ++ V 
Sbjct: 2   LTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61

Query: 257 TAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ 316
            AA   + N+V               +R  + LL    N  I+K++  ++ N+++ +  +
Sbjct: 62  QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD--E 119

Query: 317 IQAVIDAGLIGPIVNLLQDAEFGTKKE----------------AAWVISNATSGGTHEQI 360
           ++  + A  +  + + +     G                    A   + N +S       
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSAD--AGR 177

Query: 361 KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA 420
           + +     +                     +EN + V        +     +Y QL   A
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

Query: 421 EGLEKIEN 428
                 ++
Sbjct: 238 RNAYTEKS 245

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 79.1 bits (194), Expect = 5e-16
 Identities = 32/307 (10%), Positives = 84/307 (27%), Gaps = 27/307 (8%)

Query: 155 GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIR----PALRVLAQLIRSND 210
           G  IP   +              + + + C         + +      +  L  L+RS +
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDES---AKQQVYQLGGICKLVDLLRSPN 57

Query: 211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTG 269
           + V   A  AL  L   +                V LL    +  +       + N+ + 
Sbjct: 58  QNVQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST 117

Query: 270 DDFQTQCIINCGALRYLLGLLI---------------HNHNKSIKKEVCWIISNITAGNR 314
           D+ + +  +   AL  L   +I                  +  +       + N+++ + 
Sbjct: 118 DELKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADA 175

Query: 315 EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCD 374
            +      +GLI  ++  +Q+    ++ +   V +                    + L  
Sbjct: 176 GRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235

Query: 375 LLPCPDPQI-VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK-IENLQSH 432
                  +   T C     + +     +          + +  +  ++ +   +  +   
Sbjct: 236 NARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS 295

Query: 433 DNNDIHE 439
             +   E
Sbjct: 296 KKDATLE 302

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 60.6 bits (146), Expect = 4e-10
 Identities = 27/198 (13%), Positives = 59/198 (29%), Gaps = 19/198 (9%)

Query: 7   QSQQFQISAPALSLNLQSKFEI-----LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNS 61
            +  +    P    N +    +     + T +  +        LEA     + L+  +  
Sbjct: 258 MNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL 317

Query: 62  PIEK-----VIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVP 116
                     ++   +P+    L++     +    A  L+N++          + +   P
Sbjct: 318 MSSGMSQLIGLKEKGLPQIAR-LLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFP 374

Query: 117 IFVKLLAS------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKL 170
              +LL S       S+D+   A + + N+     +      S   L  ++      A  
Sbjct: 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASP 434

Query: 171 SMLRTATWTLSNFCRGKP 188
                A   LS+    K 
Sbjct: 435 KAAEAARLLLSDMWSSKE 452

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  183 bits (466), Expect = 9e-53
 Identities = 60/346 (17%), Positives = 111/346 (32%), Gaps = 27/346 (7%)

Query: 33  VAGVWSDDNKVQLEATTL-FRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEA 91
           +     DD + + E   L   + +     +  E            +  M          A
Sbjct: 109 IIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPA 168

Query: 92  ARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-----------PSDDVREQAVWALGNV 140
              L  + S   E+     + G +    +LL              S  +R  A  AL N+
Sbjct: 169 VCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNL 227

Query: 141 A-GDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIR--P 197
             GD +        +G  +  L    +     + +     L N            +R   
Sbjct: 228 TFGDVANKATLCSMKGC-MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVG 286

Query: 198 ALRVLAQLIR-SNDEKVLTDACRALAYLA-DGTNDKIQAVIEAGVCPRLVKLLGHRS--- 252
           +++ L +       E  L     AL  L+   T +K       G    LV  L +RS   
Sbjct: 287 SVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTN 346

Query: 253 ----RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN 308
                      LR + +++  ++   Q +     L+ LL  L  +H+ +I    C  + N
Sbjct: 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHL-KSHSLTIVSNACGTLWN 405

Query: 309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG 354
           ++A N +  +A+ D G +  + NL+          +A  + N  + 
Sbjct: 406 LSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  172 bits (437), Expect = 1e-48
 Identities = 54/324 (16%), Positives = 112/324 (34%), Gaps = 26/324 (8%)

Query: 17  ALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFV 76
                 ++    +      + +        A  +  K+   + +     + + G +    
Sbjct: 138 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRH--AMNELGGLQAIA 195

Query: 77  EFL----------MREDYPQLQFEAARALTNIASGTSENTK-VAIDHGAVPIFVKLLASP 125
           E L                 L+  A  ALTN+  G   N   +    G +   V  L S 
Sbjct: 196 ELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE 255

Query: 126 SDDVREQAVWALGNVAGDSS-RCRDFVLSQGALIPLLAELNEHAKLSMLRTAT---WTLS 181
           S+D+++     L N++  +    +  +   G++  L+    E  K S L++     W LS
Sbjct: 256 SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLS 315

Query: 182 NFCRGKPQPPFNQIRPALRVLAQLI----RSNDEKVLTDACRALAYL---ADGTNDKIQA 234
             C    +     +  AL  L   +    ++N   ++      L  +        D  Q 
Sbjct: 316 AHCTEN-KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 374

Query: 235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH 294
           + E      L++ L   S  +++ A  T+ N+   +    + + + GA+  L  L+ H+ 
Sbjct: 375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI-HSK 433

Query: 295 NKSIKKEVCWIISNITAGNREQIQ 318
           +K I       + N+ A    + +
Sbjct: 434 HKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  142 bits (358), Expect = 2e-37
 Identities = 67/469 (14%), Positives = 145/469 (30%), Gaps = 93/469 (19%)

Query: 22  LQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR 81
           L +K E++ ++++ + + D   + + +     M S   +     + QSG +P  ++ L  
Sbjct: 27  LGTKVEMVYSLLSMLGTHD---KDDMSRTLLAMSSSQDS--CISMRQSGCLPLLIQLLHG 81

Query: 82  ED-----------YPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKL--------- 121
            D             + +  A+ AL NI     ++ +   +   + +  ++         
Sbjct: 82  NDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE 141

Query: 122 ---------------LASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE 166
                          + +P +     AV  L  ++ D    R  +   G  +  +AEL  
Sbjct: 142 WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE-HRHAMNELGG-LQAIAEL-- 197

Query: 167 HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
                                       ++    +           +   A  AL  L  
Sbjct: 198 ----------------------------LQVDCEMYGLTNDHYSITLRRYAGMALTNLTF 229

Query: 227 GTND-KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ-CIINCGALR 284
           G    K       G    LV  L   S  +       + N+    D  ++  +   G+++
Sbjct: 230 GDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVK 289

Query: 285 YLLGLLIHNHNKSIKKEVCWIISNITAGNRE-QIQAVIDAGLIGPIVNLLQDAEFGT--- 340
            L+   +    +S  K V   + N++A   E +       G +  +V  L          
Sbjct: 290 ALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLA 349

Query: 341 -KKEAAWVISNATSG--GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397
             +    ++ N +S      +  + L    C++ L   L      IV+     L N+   
Sbjct: 350 IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNL--- 406

Query: 398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
             + +N  +        + + +   +  ++NL    +  I   S   L 
Sbjct: 407 --SARNPKD-------QEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 446

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  180 bits (458), Expect = 9e-51
 Identities = 69/461 (14%), Positives = 143/461 (31%), Gaps = 66/461 (14%)

Query: 46  EATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN 105
                   + S  +  P     +   +P  +  L       ++  AA  L ++     + 
Sbjct: 24  HERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKV 82

Query: 106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDSSRCRDFVLSQGALIPLLAEL 164
                    +P+ V LL  P  +V   A  AL N++ G     +  + +   +  L+  L
Sbjct: 83  KTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLL 142

Query: 165 NEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI------------------ 206
            +   + +    T TL N            +  AL  L   +                  
Sbjct: 143 RKARDMDLTEVITGTLWN-LSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPR 201

Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH--------------- 250
               E VLT+    L  ++   ++  + + E  G+   L+ ++                 
Sbjct: 202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261

Query: 251 ----------------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH 294
                           ++     AA     N  T      + +     +R  + LL  + 
Sbjct: 262 VCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESK 321

Query: 295 NKSIKKEVCWIISNITAGNR---EQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISN 350
             +I +     I N+ AG       I++ +     +  I +LL +      K A+  + N
Sbjct: 322 TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRN 381

Query: 351 ATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDV 410
                   + K L+ +  +  L   LP       +      + ++ +         I + 
Sbjct: 382 LAV---DARNKELIGKHAIPNLVKNLPGGQQN--SSWNFSEDTVISILNTINEV--IAEN 434

Query: 411 NQYAQLVEEAEGLEKIENLQSHDN--NDIHEMSVKILETYW 449
            + A+ + E +G+EK+  +    N        +  +L+T W
Sbjct: 435 LEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIW 475

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 97.3 bits (241), Expect = 1e-21
 Identities = 53/302 (17%), Positives = 107/302 (35%), Gaps = 30/302 (9%)

Query: 170 LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN 229
               R +  +L +  +G P PP  + +P L  +  ++    + V ++A   L +L    +
Sbjct: 22  AQHERGSLASLDSLRKGGPPPPNWR-QPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRND 80

Query: 230 DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQC-IINCGALRYLLG 288
                V +    P LV LL H  + V   A   + NI  G D   +  I NC  +  L+ 
Sbjct: 81  KVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVR 140

Query: 289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA---- 344
           LL    +  + + +   + N+ + +      ++D  L   + + +     G ++E     
Sbjct: 141 LLRKARDMDLTEVITGTLWNL-SSHDSIKMEIVDHALH-ALTDEVIIPHSGWEREPNEDC 198

Query: 345 --------------AWVISNATSGGTHEQIKHLVREGCVKPLCDLL------PCPDPQIV 384
                         A  + N +S  +  + K    +G V  L  ++         D ++V
Sbjct: 199 KPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLV 258

Query: 385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI 444
             C+  L N+      E          + A  V    G       +     ++  + + +
Sbjct: 259 ENCVCLLRNLSYQVHRE--IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL 316

Query: 445 LE 446
           L+
Sbjct: 317 LK 318

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  147 bits (373), Expect = 4e-41
 Identities = 45/242 (18%), Positives = 86/242 (35%), Gaps = 11/242 (4%)

Query: 67  IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAID----HGAVPIFVKLL 122
           + S  +P       +    Q +  A   L ++     EN   A D     G   +  + L
Sbjct: 36  VLSQPMPPTAGEAEQAADQQEREGALELLADLC----ENMDNAADFCQLSGMHLLVGRYL 91

Query: 123 ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182
            + +  +R +A   +G  + + +  ++ VL  GAL  LL  L+  A  ++   A + +S 
Sbjct: 92  EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 183 FCRGKPQPPFNQIR-PALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC 241
             R +       +R     VL + ++   +K+   +   L  L  G  +    +   G+ 
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMV 211

Query: 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKE 301
            +LV L+           L  + ++VT      +          L  LL H      + E
Sbjct: 212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELG--LEELLRHRCQLLQQHE 269

Query: 302 VC 303
             
Sbjct: 270 EY 271

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score =  126 bits (317), Expect = 5e-33
 Identities = 42/255 (16%), Positives = 94/255 (36%), Gaps = 8/255 (3%)

Query: 196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV 255
           +P      +  ++ D++    A   LA L +  ++       +G+   + + L   +  +
Sbjct: 39  QPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGL 98

Query: 256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE 315
              A + IG          + ++  GALR LL LL  +   +++ +  + IS +      
Sbjct: 99  RWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEA 158

Query: 316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL 375
            +   +       ++  +Q      K ++A+++ N   G   E    L   G V+ L  L
Sbjct: 159 GLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHP-EHKGTLCSMGMVQQLVAL 217

Query: 376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNN 435
           +           L  L +++     +   +         +L+       + + LQ H+  
Sbjct: 218 VRTEHSPFHEHVLGALCSLVT-DFPQGVRECREPELGLEELLR-----HRCQLLQQHEEY 271

Query: 436 -DIHEMSVKILETYW 449
            +  E   K+L+T +
Sbjct: 272 QEELEFCEKLLQTCF 286

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 90.1 bits (223), Expect = 3e-20
 Identities = 22/190 (11%), Positives = 60/190 (31%), Gaps = 4/190 (2%)

Query: 38  SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTN 97
           +    ++  A  L             E+V+  G + + +  L R+    ++ +A  A++ 
Sbjct: 93  AGAAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGALRKLLRLLDRDACDTVRVKALFAISC 151

Query: 98  IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGAL 157
           +           +      + ++ +      ++ ++ + L N+       +  + S G  
Sbjct: 152 LVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM- 210

Query: 158 IPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLT-D 216
           +  L  L               L +     PQ    + R     L +L+R   + +   +
Sbjct: 211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ-GVRECREPELGLEELLRHRCQLLQQHE 269

Query: 217 ACRALAYLAD 226
             +      +
Sbjct: 270 EYQEELEFCE 279

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 18/142 (12%), Positives = 38/142 (26%), Gaps = 45/142 (31%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
              ++  +     K+++                                           
Sbjct: 169 FSVLMRAMQQQVQKLKV------------------------------------------- 185

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC- 147
            ++A  L N+  G  E+       G V   V L+ +      E  + AL ++  D  +  
Sbjct: 186 -KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGV 244

Query: 148 RDFVLSQGALIPLLAELNEHAK 169
           R+    +  L  LL    +  +
Sbjct: 245 RECREPELGLEELLRHRCQLLQ 266

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  141 bits (357), Expect = 3e-36
 Identities = 57/427 (13%), Positives = 133/427 (31%), Gaps = 32/427 (7%)

Query: 43  VQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT 102
               A+    ++         +       +  +++  +     + +     A+T + +G 
Sbjct: 220 SSTIASVCLARIYENMYYDEAKARFTD-QIDEYIKDKLLAPDMESKVRVTVAITALLNGP 278

Query: 103 SE-NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLL 161
            +   +V    G + + + +  +  +  +  A   L   +         +  QG  + +L
Sbjct: 279 LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKD-KAKALCEQG--VDIL 335

Query: 162 AELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP--ALRVLAQLIR------SNDEKV 213
             L       +   A   L        Q    +     A   LA+  R        D+ +
Sbjct: 336 KRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDI 395

Query: 214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQ 273
              A   LAYL      K + + +      L+ L    ++  L   + T  N+    + Q
Sbjct: 396 RRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQ 455

Query: 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL 333
                    L  ++ L         ++       +      ++I  + + G+   +  L 
Sbjct: 456 EM-------LPEMIELAKFAKQHIPEEHE----LDDVDFINKRITVLANEGITTALCALA 504

Query: 334 QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLEN 393
           +     +++  A V++     G  E    +V+EG VK L  +      +        L  
Sbjct: 505 KTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALAR 562

Query: 394 ILKVGEAEKNTDNIGDVNQYAQLVE----EAEGLEKIENLQSHDN--NDIHEMSVKILET 447
           I      E +      ++    L+     +   LE  E+L +  N  +    +  +I++ 
Sbjct: 563 IGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKE 622

Query: 448 YWCGRVV 454
               ++ 
Sbjct: 623 QGVSKIE 629

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score =  136 bits (344), Expect = 1e-34
 Identities = 69/475 (14%), Positives = 132/475 (27%), Gaps = 103/475 (21%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
           E     +     D +  +  A  L    L+ D     + +     +   ++     +   
Sbjct: 380 EACRRFLIKPGKDKDIRRWAADGLA--YLTLDAECKEKLIEDKASIHALMDLARGGN-QS 436

Query: 87  LQFEAARALTNIASGT--------------------------------SENTKVAIDHGA 114
             +       N+ +                                  ++   V  + G 
Sbjct: 437 CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGI 496

Query: 115 VPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLR 174
                 L  + S + +E     L  V G     R  V+ +G +  LL    E  +    R
Sbjct: 497 TTALCALAKTESHNSQELIARVLNAVCGLKE-LRGKVVQEGGVKALLRMALEGTEKGK-R 554

Query: 175 TATWTLSNFCRGK-PQPPFNQIRP--ALRVLAQLIRSNDEKVLT-DACRALAYLADGTND 230
            AT  L+       P+  F+  R    +R L  L++ +   +   ++  AL  LA     
Sbjct: 555 HATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES 614

Query: 231 KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL 290
             Q +I+     ++   L      +  AA + + N+V  +D       N   +++L    
Sbjct: 615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFL---- 670

Query: 291 IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN 350
                                                    L +D +  T    A  ++ 
Sbjct: 671 ---------------------------------------ALLCEDEDEETATACAGALAI 691

Query: 351 ATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEK-------- 402
            TS       K L     +  L  L+  P P +    ++ + N++  GE           
Sbjct: 692 ITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDI 751

Query: 403 -----------NTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE 446
                      +           Q +  AE    IE   + +  D+   + KI E
Sbjct: 752 MELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDNAEIPDVFAENSKISE 806

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 90.7 bits (224), Expect = 2e-19
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 5/217 (2%)

Query: 14  SAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVP 73
             P +S + Q   +++  ++  +  D   ++   + +    L+    S  +++I+   V 
Sbjct: 567 INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVS 626

Query: 74  RFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQA 133
           +     + ED+  L   AA+ L N+            ++  V     L     ++     
Sbjct: 627 KIEY-YLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATAC 685

Query: 134 VWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF- 192
             AL  +   S +C + +L+  + + +L  L  +   ++       + N      +    
Sbjct: 686 AGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKK 745

Query: 193 ---NQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
                I   L  L QL      K    A + LA    
Sbjct: 746 LFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER 782

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 72.6 bits (177), Expect = 1e-13
 Identities = 52/418 (12%), Positives = 111/418 (26%), Gaps = 51/418 (12%)

Query: 64  EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA 123
           E + +   + +       E    +       +  +   + E TK  +    VP F+++L 
Sbjct: 43  ELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD 102

Query: 124 SPSDDVREQAVWALGNVAGDSSRC--RDFVLSQGALIP------------LLAELNEHAK 169
              ++    A + L  +    S    +        L              L+  + +   
Sbjct: 103 QKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTI 162

Query: 170 LSMLRTATWTL-SNFCRGKPQPPFNQIRPA------LRVLAQLIRSNDEKVL-------T 215
               R     L +            ++         L V ++L     E  +       T
Sbjct: 163 SGAARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSST 222

Query: 216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL-VLTAALRTIGNIVTGD-DFQ 273
            A   LA + +                  +K       +         I  ++ G  D  
Sbjct: 223 IASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVG 282

Query: 274 TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL 333
            Q +   G L+ +L +     ++  ++  C  +    A +++     +    +  +  L 
Sbjct: 283 NQVVAREGILQMILAMATT-DDELQQRVACECLIA--ASSKKDKAKALCEQGVDILKRLY 339

Query: 334 QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL------PCPDPQIVTVC 387
                G +  A   +    S G  +       +G    L +        P  D  I    
Sbjct: 340 HSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWA 399

Query: 388 LIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
             GL  +              D     +L+E+   +  + +L    N       V   
Sbjct: 400 ADGLAYL------------TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTF 445

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score =  122 bits (307), Expect = 2e-32
 Identities = 40/233 (17%), Positives = 69/233 (29%), Gaps = 33/233 (14%)

Query: 72  VPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
           + R V  L  +   P     AA  + +     SE  K       +   ++LL   ++DV+
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190
                AL N+  + +  +  V     +  LL  L +   L   +  T  L N        
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 191 PFNQIRPALRVLAQLI----------------RSNDEKVLTDACRALAYLADGTNDKIQA 234
               I  AL  L + I                   D  +  +    L  ++    D  +A
Sbjct: 130 NL-MITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKA 188

Query: 235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYL 286
           +     C  L+  L           +  +   +       +   NC   L  L
Sbjct: 189 MRR---CDGLIDSL-----------VHYVRGTIADYQPDDKATENCVCILHNL 227

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 84.2 bits (208), Expect = 9e-19
 Identities = 29/226 (12%), Positives = 79/226 (34%), Gaps = 30/226 (13%)

Query: 194 QIRPALRVLAQLIRSND--EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR 251
            +   L     ++ ++      ++ A   + +     ++  + V +     +L++LL  +
Sbjct: 5   DMEMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ 64

Query: 252 SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311
           +  V  A    + N+V  D+     +     +  LL +L    +   KK++  ++ N+++
Sbjct: 65  NEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS 124

Query: 312 GNREQIQAVIDAGLIGPIVNLL----------------QDAEFGTKKEAAWVISNATSGG 355
              ++++ ++    +  +   +                   +F         + N +S G
Sbjct: 125 N--DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAG 182

Query: 356 THEQIKHLVRE--GCVKPLCDLL------PCPDPQIVTVCLIGLEN 393
                +  +R   G +  L   +        PD +    C+  L N
Sbjct: 183 --ADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHN 226

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 84.0 bits (207), Expect = 2e-18
 Identities = 42/241 (17%), Positives = 84/241 (34%), Gaps = 27/241 (11%)

Query: 27  EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQ 86
            +L  ++  +  D   V   A ++   +      +   + +   ++ +    L + +   
Sbjct: 32  SVLKKLIELLDDDLWTVVKNAISIIMVI------AKTREDLYEPMLKKLFSLLKKSEAIP 85

Query: 87  LQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR 146
           L  E A+A   +A    E  K       +P+         +  +    +AL  +A  +  
Sbjct: 86  LTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM 140

Query: 147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI 206
               ++     + +L+  N   KL+ L        NF     +  F  + P L  +  L+
Sbjct: 141 LMASIVRD--FMSMLSSKNREDKLTAL--------NFIEAMGENSFKYVNPFLPRIINLL 190

Query: 207 RSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI 266
              DE V   A  AL +LA   +   + VI      + ++ L   S LV       I  +
Sbjct: 191 HDGDEIVRASAVEALVHLATLNDKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL 244

Query: 267 V 267
           +
Sbjct: 245 L 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 69.7 bits (170), Expect = 1e-13
 Identities = 29/201 (14%), Positives = 72/201 (35%), Gaps = 20/201 (9%)

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
           V+ + +E L  +D   +   A   +  IA    +  +  +      +F  L  S +  + 
Sbjct: 33  VLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLK----KLFSLLKKSEAIPLT 87

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190
           ++   A G +A +            ++IP+L               ++ L    +  P  
Sbjct: 88  QEIAKAFGQMAKEKPELVK------SMIPVLFANYRIGDEKTKINVSYALEEIAKANPM- 140

Query: 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH 250
               +   +R    ++ S + +    A   +  + + +   +   +     PR++ LL  
Sbjct: 141 ---LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNPFL-----PRIINLLHD 192

Query: 251 RSRLVLTAALRTIGNIVTGDD 271
              +V  +A+  + ++ T +D
Sbjct: 193 GDEIVRASAVEALVHLATLND 213

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 43.5 bits (102), Expect = 6e-05
 Identities = 26/180 (14%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCII 278
            ALA         I A  +  V  +L++LL      V+  A+  I  I    +   +   
Sbjct: 12  EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE--- 68

Query: 279 NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF 338
               L+ L  LL  +    + +E+      +     E ++++I       +    +  + 
Sbjct: 69  --PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMIP-----VLFANYRIGDE 121

Query: 339 GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG 398
            TK   ++ +               +    V+    +L   + +     L  +E + +  
Sbjct: 122 KTKINVSYALEEIAKANPM------LMASIVRDFMSMLSSKNREDKLTALNFIEAMGENS 175

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 69.8 bits (170), Expect = 7e-13
 Identities = 37/358 (10%), Positives = 104/358 (29%), Gaps = 50/358 (13%)

Query: 102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA---LI 158
              N K  +    +    + + + S + ++Q V  + N+    +     +  QGA   ++
Sbjct: 446 LLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKN-FIPQLAQQGAVKIIL 504

Query: 159 PLLAELNEHAKLSMLRTATWTLSNFCRG-KPQPPFNQIRP--ALRVLAQLIRSNDEKVLT 215
             LA   +  +          L+       P   F +     A+  L +L+  +      
Sbjct: 505 EYLANKQDIGEPIR-ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDN 563

Query: 216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ 275
                                                      AL  + N+ + +    +
Sbjct: 564 PLHNDE----------------------------QIKLTDNYEALLALTNLASSETSDGE 595

Query: 276 -----CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL----- 325
                 +        +  L++  +   +++    +ISN+ +          +        
Sbjct: 596 EVCKHIVSTKVYWSTIENLMLDENVP-LQRSTLELISNMMSHPLTIAAKFFNLENPQSLR 654

Query: 326 -IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL--PCPDPQ 382
               +V LLQ ++  +++  A + +N  +       + L ++  ++    +      D +
Sbjct: 655 NFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIE 714

Query: 383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEM 440
           +    L+    + +V       +    + +  +L +      K  +     +  I  +
Sbjct: 715 LRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMSLKRGDSGPEFSAAIPVI 772

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 49.8 bits (118), Expect = 2e-06
 Identities = 37/290 (12%), Positives = 89/290 (30%), Gaps = 14/290 (4%)

Query: 11  FQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSG 70
           +      L   +     +       V+ + +    +      ++LS   ++ I++ +++ 
Sbjct: 240 YPS-LTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELL---RLLS---SACIDETMRTY 292

Query: 71  VVPRFVEFLMRE-DYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDV 129
           +   +++ L R  +   +Q  +A  L    S T              IF+  ++      
Sbjct: 293 ITENYLQLLERSLNVEDVQIYSALVLVKTWSFTKLTCINLKQL--SEIFINAISRRIVPK 350

Query: 130 REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ 189
            E +V AL  ++  +S       ++     LL  +        L      ++N      +
Sbjct: 351 VEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE 410

Query: 190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG 249
                                   +     A     D      + ++   +   L + + 
Sbjct: 411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKE---DILLFNEKYILRTELISFLKREMH 467

Query: 250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIK 299
           + S       +R I NI    +F  Q +   GA++ +L  L +  +    
Sbjct: 468 NLSPNCKQQVVRIIYNITRSKNFIPQ-LAQQGAVKIILEYLANKQDIGEP 516

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 47.9 bits (113), Expect = 5e-06
 Identities = 34/240 (14%), Positives = 71/240 (29%), Gaps = 20/240 (8%)

Query: 7   QSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFD---RNSPI 63
           +      + P L   L     +    +            EA      + S +        
Sbjct: 539 KKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC 598

Query: 64  EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE------NTKVAIDHGAVPI 117
           + ++ + V    +E LM ++   LQ      ++N+ S          N +         I
Sbjct: 599 KHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNI 658

Query: 118 FVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL--NEHAKLSMLRT 175
            VKLL     + +        N+A         +L++  LI    ++  ++   + + + 
Sbjct: 659 LVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQR 718

Query: 176 ATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAV 235
                       P    N++ P L+         + + L DA        D   +   A+
Sbjct: 719 LLMLFFGLFEVIPDNGTNEVYPLLQ---------ENQKLKDALNMSLKRGDSGPEFSAAI 769

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 69.1 bits (168), Expect = 2e-12
 Identities = 70/421 (16%), Positives = 120/421 (28%), Gaps = 136/421 (32%)

Query: 68  QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAID-----HGAVPIFVKLL 122
           Q  +V +FVE ++R +Y  L       +       S  T++ I+     +    +F K  
Sbjct: 75  QEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKY- 129

Query: 123 ASPSDDV-REQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLS---MLRTATW 178
                +V R Q    L                       L EL     +    +L +   
Sbjct: 130 -----NVSRLQPYLKLRQA--------------------LLELRPAKNVLIDGVLGS--- 161

Query: 179 TLSNFCRGKPQPPFNQIRPALRVLA-QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE 237
                  GK              +A  +      KV       + +L     +  + V+E
Sbjct: 162 -------GK------------TWVALDVCL--SYKVQCKMDFKIFWLNLKNCNSPETVLE 200

Query: 238 AGVCPRLVKLLGHRSRLVLTAALRTIGNI-VTGDDFQTQCIINCGALRYLL-------GL 289
                 L KLL ++     T+      NI +     Q         LR LL        L
Sbjct: 201 -----MLQKLL-YQIDPNWTSRSDHSSNIKLRIHSIQA-------ELRRLLKSKPYENCL 247

Query: 290 LIHNH--NKSIKKEV---CWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFG-TKKE 343
           L+  +  N          C I+  +T   + Q+   + A     I   L       T  E
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKIL--LTTRFK-QVTDFLSAATTTHIS--LDHHSMTLTPDE 302

Query: 344 AAWVISNATSGGTHEQIKHLVREGC-VKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEK 402
              ++          + + L RE     P              + +I     ++ G    
Sbjct: 303 VKSLLLKY----LDCRPQDLPREVLTTNPR------------RLSIIAES--IRDG---L 341

Query: 403 NT-DNIGDVN--QYAQLVEEAEGLEKIENLQSHDNNDIHEM------SVKI----LETYW 449
            T DN   VN  +   ++E +     +  L+  +   + +       S  I    L   W
Sbjct: 342 ATWDNWKHVNCDKLTTIIESS-----LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIW 396

Query: 450 C 450
            
Sbjct: 397 F 397

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 66.4 bits (162), Expect = 2e-12
 Identities = 33/261 (12%), Positives = 61/261 (23%), Gaps = 51/261 (19%)

Query: 90  EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD 149
           +A++                          +LL   +   R  +   L    G  +    
Sbjct: 9   KASKEYGLYNQCKKL---------NDDELFRLLDDHNSLKRISSARVLQLRGGQDA---- 55

Query: 150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN 209
                   + L  E              + L        +   + +   L      +   
Sbjct: 56  --------VRLAIEFCSDKNYIRRDIGAFILGQI--KICKKCEDNVFNIL--NNMALNDK 103

Query: 210 DEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG 269
              V   A  + A            ++E             +S  V  A    I  I   
Sbjct: 104 SACVRATAIESTAQRCKKNPIYSPKIVEQ-----SQITAFDKSTNVRRATAFAISVI--N 156

Query: 270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPI 329
           D            +  L+ LL  + N  ++    + I+     N +              
Sbjct: 157 DK---------ATIPLLINLL-KDPNGDVRNWAAFAININKYDNSDIRDC---------F 197

Query: 330 VNLLQDAEFGTKKEAAWVISN 350
           V +LQD     + EA   +S 
Sbjct: 198 VEMLQDKNEEVRIEAIIGLSY 218

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 64.8 bits (158), Expect = 8e-12
 Identities = 29/253 (11%), Positives = 62/253 (24%), Gaps = 45/253 (17%)

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
                   L   +    +  +AR L                  AV + ++  +  +   R
Sbjct: 24  NDDELFRLLDDHN-SLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRR 71

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190
           +   + LG +                   L           +  TA  + +  C+  P  
Sbjct: 72  DIGAFILGQIKICKK------CEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY 125

Query: 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH 250
                   +             V      A++ + D               P L+ LL  
Sbjct: 126 S----PKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKD 170

Query: 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310
            +  V   A   I      +                + +L  + N+ ++ E    +S   
Sbjct: 171 PNGDVRNWAAFAININKYDNS---------DIRDCFVEML-QDKNEEVRIEAIIGLSYR- 219

Query: 311 AGNREQIQAVIDA 323
             ++  +  + D 
Sbjct: 220 -KDKRVLSVLCDE 231

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 50.6 bits (121), Expect = 4e-07
 Identities = 29/267 (10%), Positives = 69/267 (25%), Gaps = 52/267 (19%)

Query: 128 DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK 187
             + +A    G                      L  L +        ++   L    RG 
Sbjct: 5   YQKRKASKEYGLYNQCKK----------LNDDELFRLLDDHNSLKRISSARVLQL--RGG 52

Query: 188 PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL 247
                     A+R+  +     +          L  +        +   +          
Sbjct: 53  QD--------AVRLAIEFCSDKNYIRRDIGAFILGQIKIC-----KKCEDNVFNILNNMA 99

Query: 248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIIS 307
           L  +S  V   A+ +       +   +  I+          +   + + ++++   + IS
Sbjct: 100 LNDKSACVRATAIESTAQRCKKNPIYSPKIVE------QSQITAFDKSTNVRRATAFAIS 153

Query: 308 NITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREG 367
            I   ++  I  +I+          L+D     +  AA+ I+                  
Sbjct: 154 VI--NDKATIPLLINL---------LKDPNGDVRNWAAFAININKYDN----------SD 192

Query: 368 CVKPLCDLLPCPDPQIVTVCLIGLENI 394
                 ++L   + ++    +IGL   
Sbjct: 193 IRDCFVEMLQDKNEEVRIEAIIGLSYR 219

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 43/245 (17%), Positives = 74/245 (30%), Gaps = 57/245 (23%)

Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
           V  +++ L  +    ++  AA AL  I            D  AV   +K L      VR 
Sbjct: 21  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 68

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
            A  ALG +  + +            +  L +  +     + ++A   L     G  +  
Sbjct: 69  AAADALGQIGDERA------------VEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 112

Query: 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR 251
                 A+  L + ++  D  V   A  AL  + D      +AV        L+K L   
Sbjct: 113 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD-----ERAV------EPLIKALKDE 155

Query: 252 SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA 311
              V  +A   +G I  G +              +  L         +K     +    +
Sbjct: 156 DGWVRQSAADALGEI--GGE---------RVRAAMEKLA-ETGTGFARKVAVNYLETHKS 203

Query: 312 GNREQ 316
            N   
Sbjct: 204 FNHHH 208

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 44/249 (17%), Positives = 78/249 (31%), Gaps = 56/249 (22%)

Query: 111 DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKL 170
           D   V +++K L   S  VR  A +ALG +  + +            +  L +  +    
Sbjct: 17  DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA------------VEPLIKALKDEDA 64

Query: 171 SMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTND 230
            + R A   L     G           A+  L + ++  D  V   A  AL  + D    
Sbjct: 65  WVRRAAADALGQI--GDE--------RAVEPLIKALKDEDGWVRQSAAVALGQIGD---- 110

Query: 231 KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL 290
             +  +E      L+K L      V  AA   +G I  GD+          A+  L+  L
Sbjct: 111 --ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GDE---------RAVEPLIKAL 152

Query: 291 IHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISN 350
             + +  +++     +  I               +   +  L +      +K A   +  
Sbjct: 153 -KDEDGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLET 200

Query: 351 ATSGGTHEQ 359
             S   H  
Sbjct: 201 HKSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
            V   ++ L +++   ++  AA AL  I            D  AV   +K L      VR
Sbjct: 113 AVEPLIKAL-KDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVR 160

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLL 161
           + A  ALG + G+  R         A+  L 
Sbjct: 161 QSAADALGEIGGERVR--------AAMEKLA 183

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 38/195 (19%), Positives = 65/195 (33%), Gaps = 45/195 (23%)

Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
           V  +++ L  +    ++  AA AL  I            D  AV   +K L      VR 
Sbjct: 16  VEMYIKNLQDDS-YYVRRAAAYALGKIG-----------DERAVEPLIKALKDEDAWVRR 63

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
            A  ALG +  + +            +  L +  +     + ++A   L     G  +  
Sbjct: 64  AAADALGQIGDERA------------VEPLIKALKDEDGWVRQSAAVALGQI--GDER-- 107

Query: 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR 251
                 A+  L + ++  D  V   A  AL  + D      +  +E      L+K L   
Sbjct: 108 ------AVEPLIKALKDEDWFVRIAAAFALGEIGD------ERAVEP-----LIKALKDE 150

Query: 252 SRLVLTAALRTIGNI 266
              V  +A   +G I
Sbjct: 151 DGWVRQSAADALGEI 165

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 57.7 bits (140), Expect = 6e-10
 Identities = 42/258 (16%), Positives = 78/258 (30%), Gaps = 67/258 (25%)

Query: 91  AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF 150
            +    +             D   V +++K L   S  VR  A +ALG +  + +     
Sbjct: 3   GSHHHHHHT-----------DPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDERA----- 46

Query: 151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND 210
                  +  L +  +     + R A   L     G           A+  L + ++  D
Sbjct: 47  -------VEPLIKALKDEDAWVRRAAADALGQI--GDE--------RAVEPLIKALKDED 89

Query: 211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD 270
             V   A  AL  + D      +  +E      L+K L      V  AA   +G I  GD
Sbjct: 90  GWVRQSAAVALGQIGD------ERAVEP-----LIKALKDEDWFVRIAAAFALGEI--GD 136

Query: 271 DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIV 330
           +          A+  L+  L  + +  +++     +  I               +   + 
Sbjct: 137 E---------RAVEPLIKAL-KDEDGWVRQSAADALGEIG-----------GERVRAAME 175

Query: 331 NLLQDAEFGTKKEAAWVI 348
            L +      +K A   +
Sbjct: 176 KLAETGTGFARKVAVNYL 193

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 22/91 (24%), Positives = 34/91 (37%), Gaps = 20/91 (21%)

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
            V   ++ L +++   ++  AA AL  I            D  AV   +K L      VR
Sbjct: 108 AVEPLIKAL-KDEDWFVRIAAAFALGEIG-----------DERAVEPLIKALKDEDGWVR 155

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLL 161
           + A  ALG + G+  R         A+  L 
Sbjct: 156 QSAADALGEIGGERVR--------AAMEKLA 178

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
            V   ++ L  ED   ++  AA AL  I                     KL  + +   R
Sbjct: 139 AVEPLIKALKDED-GWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFAR 186

Query: 131 EQAVWALG 138
           + AV  L 
Sbjct: 187 KVAVNYLE 194

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 62.8 bits (151), Expect = 1e-10
 Identities = 33/232 (14%), Positives = 87/232 (37%), Gaps = 10/232 (4%)

Query: 23  QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLS----FDRNSPIEKVIQSGVVPRFVEF 78
                I+ T+   + SD  +++  ++   + ++         S +   +   +  R    
Sbjct: 82  YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSA 141

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
           + +++   +Q EA   + ++ S       V      +   +  L SP   VR++ + ALG
Sbjct: 142 IAKQEDVSVQLEALDIMADMLS-RQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALG 200

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPA 198
           ++      C + V     +  LL+EL+++  +S  RT    ++   R         +   
Sbjct: 201 HLV---MSCGNIVFVD-LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKI 256

Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH 250
           + ++ +    +D+++     +A          ++   +   +    +K L +
Sbjct: 257 IPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST-IINICLKYLTY 307

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 45.1 bits (105), Expect = 5e-05
 Identities = 36/331 (10%), Positives = 88/331 (26%), Gaps = 47/331 (14%)

Query: 26  FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYP 85
            +   + V     +          +  K L++D N   +   +             +   
Sbjct: 276 IQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGS 335

Query: 86  QLQFE------------AARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQA 133
             ++             AA+ L  + S   E           P  +       ++V+   
Sbjct: 336 DDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKT-VSPALISRFKEREENVKADV 394

Query: 134 VWALGNVAGDSSRCRDFVLSQGA-----------------LIPLLAELNEHAKLSMLRTA 176
             A  ++   +   + ++    A                 ++  L +  +   +   +  
Sbjct: 395 FHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCC 454

Query: 177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLI--RSNDEKVLTDACRALAYLADGTNDKIQA 234
              L+      P      I   +  +   +  +S+   +  DA   L  +    + ++  
Sbjct: 455 FNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFH 514

Query: 235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH 294
                + P +V  +G     + + AL     +V               +R L      + 
Sbjct: 515 PHVQALVPPVVACVGDPFYKITSEALLVTQQLVK-------------VIRPLDQPSSFDA 561

Query: 295 NKSIKKEVCWIISNITAGN--REQIQAVIDA 323
              IK      I  + A +  +E  +  I  
Sbjct: 562 TPYIKDLFTCTIKRLKAADIDQEVKERAISC 592

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 44.3 bits (103), Expect = 9e-05
 Identities = 36/275 (13%), Positives = 79/275 (28%), Gaps = 44/275 (16%)

Query: 26   FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYP 85
             ++L  +   V+S    +  + +                K   + V     +        
Sbjct: 773  MDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTD 832

Query: 86   QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA-GDS 144
             ++  A  +L  +      + ++ +      + ++  +SPS++V+  A +ALG+++ G+ 
Sbjct: 833  SIRLLALLSLGEVGHHIDLSGQLELKS----VILEAFSSPSEEVKSAASYALGSISVGNL 888

Query: 145  SRCRDFVLSQ-------------------------------GALIPLLAELNEHAKLSML 173
                 FVL +                                 +  LL +  E A+    
Sbjct: 889  PEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTR 948

Query: 174  RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQ 233
                  L       P+         L  L   + S      +    A+ +        I 
Sbjct: 949  NVVAECLGKLTLIDPE-------TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPID 1001

Query: 234  AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT 268
             +++       +K L      V   AL T  +   
Sbjct: 1002 PLLKN-CIGDFLKTLEDPDLNVRRVALVTFNSAAH 1035

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 43.2 bits (100), Expect = 2e-04
 Identities = 45/382 (11%), Positives = 110/382 (28%), Gaps = 31/382 (8%)

Query: 6    LQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEK 65
            L +    I   + SL       +L  +   +   D  V   A +    +           
Sbjct: 671  LSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAK--VYPSSLS 728

Query: 66   VIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASP 125
             I   ++   +  +           A          T  N    +D     +   + +  
Sbjct: 729  KISGSILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYMDLLR-MLTGPVYSQS 787

Query: 126  SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185
            +    +Q+ +++       +R             +    N  +  S+   A  +L     
Sbjct: 788  TALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGH 847

Query: 186  GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC--PR 243
                    ++     V+ +   S  E+V + A  AL  ++ G   +    +   +   P+
Sbjct: 848  HIDLSGQLEL---KSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPK 904

Query: 244  LVKLLGHRSRLVLTAA------------LRTIGNIVTGDDFQTQ----------CIINCG 281
               LL H  + ++++A               +       +  T+           +I+  
Sbjct: 905  RQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPE 964

Query: 282  ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTK 341
             L   L   + + +   +  V   +    + + + I  ++    IG  +  L+D +   +
Sbjct: 965  TLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN-CIGDFLKTLEDPDLNVR 1023

Query: 342  KEAAWVISNATSGGTHEQIKHL 363
            + A    ++A           L
Sbjct: 1024 RVALVTFNSAAHNKPSLIRDLL 1045

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 8e-10
 Identities = 68/439 (15%), Positives = 137/439 (31%), Gaps = 45/439 (10%)

Query: 12  QISAPALSLNLQSKFEILPTMVAGVWSDDNK-VQLEATTLFRKMLSFDRNSPIEKVIQSG 70
            + A +   +          +V  +   D    +  A  LF           +   +++ 
Sbjct: 110 SLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR-----VSSAVKAE 164

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
           +   F   L  +D P ++  AA  L   A     +   +     +P+F  L +   D VR
Sbjct: 165 LRQYFRN-LCSDDTPMVRRAAASKLGEFAKVLELDNVKSE---IIPMFSNLASDEQDSVR 220

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190
             AV A  N+A    +       +  ++P L +  E     +        +     K   
Sbjct: 221 LLAVEACVNIA----QLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ--KAVG 274

Query: 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG-TNDKIQAVIEAGVCPRLVKLLG 249
           P       +     L++  + +V   A   +    +  + D  + VI + + P + +L+ 
Sbjct: 275 PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVS 334

Query: 250 HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW-IISN 308
             ++ V +A    I  +          +     + +LL L +    K    EV   IISN
Sbjct: 335 DANQHVKSALASVIMGLS-------PILGKDNTIEHLLPLFL-AQLKDECPEVRLNIISN 386

Query: 309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC 368
           +   N       +   L+  IV L +DA++  +      +         E     +   C
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446

Query: 369 VKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIEN 428
           +  L D        I       L+ +++    E     I               + K+  
Sbjct: 447 MAWLVD----HVYAIREAATSNLKKLVEKFGKEWAHATI---------------IPKVLA 487

Query: 429 LQSHDNNDIHEMSVKILET 447
           +    N      ++  +  
Sbjct: 488 MSGDPNYLHRMTTLFCINV 506

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 57.1 bits (137), Expect = 9e-09
 Identities = 43/306 (14%), Positives = 101/306 (33%), Gaps = 34/306 (11%)

Query: 71  VVPRFVEFL---MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSD 127
           ++   +EF+   +  D  + +  A  A  +I  G  +  +    H A+P  + L+   S 
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425

Query: 128 DVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLS--MLRTATWTLSNFCR 185
            V+E   W +G +A       + +  Q  L  ++       +    +    +WT+ N   
Sbjct: 426 QVKETTAWCIGRIADS---VAESIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE 482

Query: 186 GKPQPPFNQIRPAL-RVLAQLIRS-----NDEKVLTDACRALAYLADGTNDKIQAVIEA- 238
              +   + I      ++  LI +     N+      A  AL  + +   D +     + 
Sbjct: 483 QLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASI 542

Query: 239 --GVCPRLVKLLGHRSRLV-----------LTAALRTIGNIVT--GDDFQTQCIINCGAL 283
              V  +L + +      +            +  L  +  ++       +    +    +
Sbjct: 543 STFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADM---LM 599

Query: 284 RYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE 343
                LL    +  I+ +V + IS + A   +  +  ++      ++  L   +      
Sbjct: 600 GLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSIT 658

Query: 344 AAWVIS 349
           A   I+
Sbjct: 659 AVGFIA 664

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} Length = 265

 Score = 55.2 bits (132), Expect = 1e-08
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 19/218 (8%)

Query: 22  LQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR 81
                  L  ++     DD   +L A     ++L    +     V++   +  F+   + 
Sbjct: 28  ALEDKRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLER-HLDVFIN-ALS 85

Query: 82  EDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG--N 139
           ++  ++  +A RAL  +       +K  +   A    V LL SP D +R + +  L    
Sbjct: 86  QENEKVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQ 143

Query: 140 VAGDSSRCRDFVLS---------QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190
              DS   R ++           + A   L   +      S        + +      Q 
Sbjct: 144 PLEDSKLVRTYINELVVSPDLYTKVAGFCLFLNM---LNSSADSGHLTLILDEIPSLLQN 200

Query: 191 PFNQIR-PALRVLAQLIRSNDEKVLTDACRALAYLADG 227
               I   AL VL + +     + +      ++ + DG
Sbjct: 201 DNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDG 238

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 54.4 bits (130), Expect = 5e-08
 Identities = 41/332 (12%), Positives = 88/332 (26%), Gaps = 28/332 (8%)

Query: 71  VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVR 130
            +   ++ L+      ++      L  IA G  +     +    +P  ++ L+     VR
Sbjct: 359 HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLIQCLSDKKALVR 417

Query: 131 EQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP 190
               W L   A            +  +  LL  + +  K  +   A    +         
Sbjct: 418 SITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFATLEEEACTE 476

Query: 191 PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH 250
               +   L  L         K L     A+  LAD       +V      P  ++    
Sbjct: 477 LVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLAD-------SVGHHLNKPEYIQ---- 525

Query: 251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT 310
               +L   L    N++  +D     ++ C      L  +              +     
Sbjct: 526 ----MLMPPLIQKWNMLKDEDKDLFPLLEC------LSSVATALQSGFLPYCEPVYQRCV 575

Query: 311 AGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAW-VISNATSGGTHEQIKHLVREGCV 369
                 +Q  +   ++        +A        A  ++S    G      + + R   +
Sbjct: 576 ----NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNIL 631

Query: 370 KPLCDLLPCPDPQIVTVCLIGLENILKVGEAE 401
             +   +    P++       L ++ K     
Sbjct: 632 TLMYQCMQDKMPEVRQSSFALLGDLTKACFQH 663

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 24/151 (15%), Positives = 47/151 (31%), Gaps = 34/151 (22%)

Query: 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSML 173
            +      +A  +  VR     AL  +  ++            L+  L+  +   +    
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDEAF---------EPLLESLSNEDWRIR---- 59

Query: 174 RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQ 233
             A W + NF          Q   A+  L +L+  +   V + A R+L  +        +
Sbjct: 60  GAAAWIIGNF----------QDERAVEPLIKLLEDDSGFVRSGAARSLEQIGG------E 103

Query: 234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264
            V  A     + KL    +      A+  + 
Sbjct: 104 RVRAA-----MEKLAETGTGFARKVAVNYLE 129

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 45.0 bits (107), Expect = 4e-06
 Identities = 19/143 (13%), Positives = 42/143 (29%), Gaps = 34/143 (23%)

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
            M ++   ++ + + AL              +   A    ++ L++    +R  A W +G
Sbjct: 20  HMADENKWVRRDVSTAL------------SRMGDEAFEPLLESLSNEDWRIRGAAAWIIG 67

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPA 198
           N   + +            +  L +L E     +   A  +L     G  +         
Sbjct: 68  NFQDERA------------VEPLIKLLEDDSGFVRSGAARSLEQI--GGER--------V 105

Query: 199 LRVLAQLIRSNDEKVLTDACRAL 221
              + +L  +        A   L
Sbjct: 106 RAAMEKLAETGTGFARKVAVNYL 128

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.2 bits (105), Expect = 8e-06
 Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 23/105 (21%)

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
            +  +  +++  AA  + N             D  AV   +KLL   S  VR  A  +L 
Sbjct: 50  SLSNEDWRIRGAAAWIIGNFQ-----------DERAVEPLIKLLEDDSGFVRSGAARSLE 98

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
            + G+                 + +L E       + A   L   
Sbjct: 99  QIGGERV------------RAAMEKLAETGTGFARKVAVNYLETH 131

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 58/338 (17%), Positives = 111/338 (32%), Gaps = 39/338 (11%)

Query: 27  EILPTMVAGVWSDD--NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY 84
           EIL  ++ G+  ++  N V+L AT      L F + +  ++  +  ++    E     D 
Sbjct: 172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD- 230

Query: 85  PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 144
            +++  A + L  I S   +  +  +      I ++ + S  D+V  Q +    NV  + 
Sbjct: 231 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290

Query: 145 SRCRDFVLSQGA-------------------LIPLLAELNEH-------AKLSMLRTATW 178
                                          L+P+L +              +  + A  
Sbjct: 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 350

Query: 179 TLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
            L              + P ++   + I++ D +    A  A   + +G        +  
Sbjct: 351 CLMLLATCCEDDIVPHVLPFIK---EHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVI 407

Query: 239 GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH--NHNK 296
              P L++L+   S +V   A  T+G I    +   +  IN   L  LL  LI   +   
Sbjct: 408 QAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIEGLSAEP 464

Query: 297 SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ 334
            +   VCW  S++     E     +      P    L 
Sbjct: 465 RVASNVCWAFSSLAEAAYEAAD--VADDQEEPATYCLS 500

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 28/255 (10%)

Query: 82  EDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVA 141
           E+     +   +A        +   +  I    +P   + + +P    R+ AV A G + 
Sbjct: 335 ENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCIL 394

Query: 142 -GDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ--IRPA 198
            G        ++ Q   +P L EL +   + +  TA WT+   C   P+   N   + P 
Sbjct: 395 EGPEPSQLKPLVIQ--AMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPL 452

Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC-------------PRLV 245
           L+ L + + +   +V ++ C A + LA+   +      +                  +L+
Sbjct: 453 LQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLL 511

Query: 246 KLLGH---RSRLVLTAALRTIGNIVTGDDFQTQCIINC------GALRYLLGLLIHNHNK 296
           +           + ++A  ++  IV          +          L+ +L +  H  + 
Sbjct: 512 ETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQST 571

Query: 297 SIKKEVCWIISNITA 311
           S + +   + S + A
Sbjct: 572 SDRIQFNDLQSLLCA 586

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} Length = 963

 Score = 47.5 bits (112), Expect = 9e-06
 Identities = 31/167 (18%), Positives = 58/167 (34%), Gaps = 21/167 (12%)

Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
               +  ++  D   L++  A  +    +GT  N+ V        +    ++  +DDVR 
Sbjct: 543 ADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVK------RLLHVAVSDSNDDVRR 596

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
            AV ALG V                +  ++  L++     +     + L   C GK    
Sbjct: 597 AAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQS 647

Query: 192 FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
                 A+ VL  L +   + V   A  AL+ +     +K+   +  
Sbjct: 648 ------AIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVAD 688

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 41/286 (14%), Positives = 78/286 (27%), Gaps = 59/286 (20%)

Query: 68  QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH--GAVPIFVKLLASP 125
           Q   V   +  L   D+  +++   + LT++        +  I      V   + LLA  
Sbjct: 120 QQENVTLLLSLLEEFDF-HVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADS 178

Query: 126 SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR 185
            + +R   V  L  +   +   +  V  + A   LL  + E                   
Sbjct: 179 REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIV---------- 228

Query: 186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLV 245
                    +   L +L  L+++N+                          E     R+ 
Sbjct: 229 ---------VEDCLILLQNLLKNNNSN-------------------QNFFKEGSYIQRMK 260

Query: 246 KLLGHRSR---------------LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLL 290
                                  L L   L +  N         + +  CG L+ L  +L
Sbjct: 261 PWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTIL 320

Query: 291 I-HNHNKSIKKEVCWIISNITAGNREQIQ--AVIDAGLIGPIVNLL 333
           +       I  E    +S +  G +      A ++A    P   ++
Sbjct: 321 MATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIV 366

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	482
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	100.0
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.94
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.86
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.85
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.8
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.8
3grl_A	651	General vesicular transport factor P115; vesicle t	99.8
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.79
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.74
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.7
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.69
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.66
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.64
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.63
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.63
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.63
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.59
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.58
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.58
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.56
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.55
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.45
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.44
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.43
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.41
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.39
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.3
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.2
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.09
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.05
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.02
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.96
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.95
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.9
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.88
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.85
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.8
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.76
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.73
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.65
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.64
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.63
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.52
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.5
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.48
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.47
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	98.46
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.37
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.35
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.31
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	98.3
2x1g_F	971	Cadmus; transport protein, developmental protein,	98.28
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.21
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.17
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	98.11
2x19_B	963	Importin-13; nuclear transport, protein transport;	98.06
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	97.99
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.81
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	97.64
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.59
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.58
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.49
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	97.47
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.37
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	97.35
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	97.34
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.32
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.26
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	97.19
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	97.16
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.16
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.93
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.86
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.74
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	96.29
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.27
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.23
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	96.21
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	95.9
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	95.79
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.57
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	95.53
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.02
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.01
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.88
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.86
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.71
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	94.69
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.32
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	93.14
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	93.12
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	93.09
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	93.0
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	92.27
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	91.5
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	90.5
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	90.34
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	89.85
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	89.64
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	88.51
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	88.18
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	87.78
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	86.62
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	85.49
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	85.49
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	85.4
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	84.69
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	84.58
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	84.31
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	84.05
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	83.3
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	83.02
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	80.65

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.3e-54  Score=427.10  Aligned_cols=420  Identities=47%  Similarity=0.772  Sum_probs=389.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .++.+++.++|+|+..|..|+..++++++.+++++++.+++.|++|.|+++|++.+++++|..|+|+|+|++.++++.+.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            58999999999999999999999999998887888999999999999999998766589999999999999999999999


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh----hhhHHHHHHHHHHHh
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA----KLSMLRTATWTLSNF  183 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~~L  183 (482)
                      .+++.|++|.|+.+|.++++.+++.|+|+|+|++.+.+.+++.+.+.|++++++.++....    ...+++.++|+++++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999995432    235688899999999


Q ss_pred             hcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          184 CRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       184 ~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      +... +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.++.++++.++..++++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~a  297 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  297 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHH
Confidence            9987 555556668999999999999999999999999999999888888888999999999999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKK  342 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  342 (482)
                      |+|++.+++.....+++.|+++.|+.++.++ +..+++.|+|+|+|++.++++..+.+.+.|+++.|+.++.+++.++++
T Consensus       298 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~  376 (510)
T 3ul1_B          298 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  376 (510)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHH
T ss_pred             HHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHH
Confidence            9999999999889999999999999999998 999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhch
Q 043116          343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEG  422 (482)
Q Consensus       343 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~  422 (482)
                      .|+|+|+|++..++.++..++.+.|+++.|+++++++|++++..++++|.++++.++..      ...+.++..|+++||
T Consensus       377 ~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~------~~~~~~~~~iee~gg  450 (510)
T 3ul1_B          377 EAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL------GETEKLSIMIEECGG  450 (510)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc------cchHHHHHHHHHcCc
Confidence            99999999999889999999999999999999999999999999999999999987764      345778999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116          423 LEKIENLQSHDNNDIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       423 ~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  454 (482)
                      +++|+.|++++|++||++|.++|++||+++++
T Consensus       451 l~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  482 (510)
T 3ul1_B          451 LDKIEALQRHENESVYKASLNLIEKYFSVEEE  482 (510)
T ss_dssp             HHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            99999999999999999999999999987654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.1e-53  Score=422.68  Aligned_cols=422  Identities=46%  Similarity=0.756  Sum_probs=390.0

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      ...++.+++.++|+|+..+..|+..++++++.+.+++.+.+++.|++|.|+++|+..++++++..|+|+|+|++.++++.
T Consensus        75 ~~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~  154 (529)
T 3tpo_A           75 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ  154 (529)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            34689999999999999999999999999988778889999999999999999987666899999999999999999999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh----hhhHHHHHHHHHH
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA----KLSMLRTATWTLS  181 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~----~~~~~~~a~~~L~  181 (482)
                      +..+++.|+++.|+.++.++++.+++.|+|+|+||+.+++.++..+.+.|++++++.++....    ...+.+.++|+++
T Consensus       155 ~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~  234 (529)
T 3tpo_A          155 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  234 (529)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999995432    2356888999999


Q ss_pred             HhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 043116          182 NFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAAL  260 (482)
Q Consensus       182 ~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~  260 (482)
                      +++... +........+++|.|+.++.+++++++..++++|++++...++..+.+.+.|+++.|+.+|.++++.++..++
T Consensus       235 nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~  314 (529)
T 3tpo_A          235 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  314 (529)
T ss_dssp             HHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             HHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHH
Confidence            999987 5555666789999999999999999999999999999998888888899999999999999999999999999


Q ss_pred             HHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 043116          261 RTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGT  340 (482)
Q Consensus       261 ~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  340 (482)
                      ++|+|++.+++.....+++.|+++.|+.++.++ ++.++++|+|+|+|++.+++.....+.+.|+++.|+.++.+++.++
T Consensus       315 ~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v  393 (529)
T 3tpo_A          315 RAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKT  393 (529)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHH
Confidence            999999998998889999999999999999998 9999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh
Q 043116          341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA  420 (482)
Q Consensus       341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  420 (482)
                      +..|+|+|+|++..+++++...+.+.|+++.|+++|+++|++++..++++|.+++..++..      ...+.++..|+++
T Consensus       394 ~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~------~~~~~~~~~iee~  467 (529)
T 3tpo_A          394 QKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL------GETEKLSIMIEEC  467 (529)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhc------cChHHHHHHHHHC
Confidence            9999999999999889999999999999999999999999999999999999999987764      2357789999999


Q ss_pred             chHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116          421 EGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       421 ~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  454 (482)
                      ||++.|+.|++|+|.+||++|..+|++||.++++
T Consensus       468 ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~~~  501 (529)
T 3tpo_A          468 GGLDKIEALQRHENESVYKASLNLIEKYFSVEEE  501 (529)
T ss_dssp             TCHHHHTGGGGCSSHHHHHHHHHHHHHHC-----
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            9999999999999999999999999999986654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.2e-48  Score=388.10  Aligned_cols=435  Identities=75%  Similarity=1.137  Sum_probs=392.3

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ....+|.|++.++++++.++..|++.|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++
T Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            44569999999999999999999999999988764577899999999999999999876589999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      .+..+++.|+++.|+.++.++++.++..|+|+|++++.+.+..+..+.+.|+++.|+.++..+.+..++..++|+|.+|+
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998888889999999999999999977778899999999999999


Q ss_pred             cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116          185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  264 (482)
                      ...+........+++|.|+.++.+++++++..++++|++++...+...+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~  311 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVG  311 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHH
Confidence            98777777777999999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      +++.+++.....+++.|+++.|+.+|.++.++.++..|+|+|+|++.++++.++.+++.|+++.|+.++.++++.++..|
T Consensus       312 nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a  391 (528)
T 4b8j_A          312 NIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEA  391 (528)
T ss_dssp             HHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHH
Confidence            99998888888899999999999999987678999999999999999888888999999999999999999999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      +++|++++..++++....+.+.|+++.|+.++.+++++++..++++|.+++...+....... ...+++...+.+.|+++
T Consensus       392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~  470 (528)
T 4b8j_A          392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAA-GDVNVFSQMIDEAEGLE  470 (528)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSCCHHHHHHHHTTHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhccc-ccccHHHHHHHHCCcHH
Confidence            99999999987889999999999999999999999999999999999999988766432111 13567899999999999


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYWCGRVVGPQPGL  460 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  460 (482)
                      .|..+++++++++++.|..++++||..++.++.++.
T Consensus       471 ~l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~~~~~  506 (528)
T 4b8j_A          471 KIENLQSHDNNEIYEKAVKILEAYWMDEEDDTMGAT  506 (528)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHCCCccccccccc
Confidence            999999999999999999999999998877655544

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.2e-46  Score=372.62  Aligned_cols=428  Identities=54%  Similarity=0.808  Sum_probs=388.3

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ..+.++.+++.++++++..+..|++.|.++++....+....++..|++|.|+++|.+++++.++..|+++|++++.++++
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            44679999999999999999999999999988654566788899999999999999973389999999999999998889


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      .+..+++.|+++.|+.++.++++.+++.|+|+|++++.+.+..+..+...|+++.|+.++ .+.+..++..++|+|.+|+
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~L~  243 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSNLC  243 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHh-ccCCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999988888899999999999999999 4578899999999999999


Q ss_pred             cCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116          185 RGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI  263 (482)
Q Consensus       185 ~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  263 (482)
                      ... +........+++|.|+.++.++++.++..++++|.+++...++....+.+.|+++.|+.++.++++.++..|+++|
T Consensus       244 ~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L  323 (530)
T 1wa5_B          244 RGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAV  323 (530)
T ss_dssp             CCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred             CCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHH
Confidence            886 6666667789999999999999999999999999999988887788888899999999999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHH
Q 043116          264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE  343 (482)
Q Consensus       264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~  343 (482)
                      ++++.+++.....+++.|+++.|+.+|.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|+.++.++++.++..
T Consensus       324 ~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~  402 (530)
T 1wa5_B          324 GNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKE  402 (530)
T ss_dssp             HHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHH
Confidence            999998888888889999999999999999 9999999999999999988888889999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCH--HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhc
Q 043116          344 AAWVISNATSGGTH--EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAE  421 (482)
Q Consensus       344 a~~aL~~l~~~~~~--~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~  421 (482)
                      |+++|++++..+++  +....+.+.|+++.|+.++.+++++++..++++|.+++..++...... ....++++..+.+.|
T Consensus       403 a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~-~~~~~~~~~~l~~~g  481 (530)
T 1wa5_B          403 ACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEAR-GLNINENADFIEKAG  481 (530)
T ss_dssp             HHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-TCSSCHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcc-cccccHHHHHHHHcC
Confidence            99999999987666  788888999999999999999999999999999999998876532100 012457899999999


Q ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116          422 GLEKIENLQSHDNNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       422 ~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      +++.|..|+.++++++++.|..+|++||.+++.+
T Consensus       482 ~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~~~  515 (530)
T 1wa5_B          482 GMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDA  515 (530)
T ss_dssp             HHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC--
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            9999999999999999999999999999987764

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=9.1e-45  Score=356.28  Aligned_cols=426  Identities=56%  Similarity=0.884  Sum_probs=382.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhc-CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQS-GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      .++.+++.++++++.++..|+..|.++++....+....++.. |+++.|++++++++++.++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            489999999999999999999999998764335556778887 9999999999998338999999999999999888888


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      ..+++.|+++.|+.++.++++.+++.|+++|++++.+.+..+..+.+.|+++.++.++.++.+..++..++|+|.+++..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            88899999999999999999999999999999999888888899999999999999996557889999999999999987


Q ss_pred             C-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          187 K-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       187 ~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                      . +........+++|.++.++.++++.++..++++|.+++...++....+.+.|+++.++.++.++++.++..|+++|++
T Consensus       181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~  260 (450)
T 2jdq_A          181 KSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGN  260 (450)
T ss_dssp             SSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHH
Confidence            6 555566668999999999999999999999999999998877777788889999999999999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHH
Q 043116          266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAA  345 (482)
Q Consensus       266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~  345 (482)
                      ++.+.+...+.+.+.|+++.++.++.++ ++.++..|+|+|+|++.++++..+.+++.|+++.|++++.+++++++..|+
T Consensus       261 l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~  339 (450)
T 2jdq_A          261 IVTGDDIQTQVILNCSALQSLLHLLSSP-KESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAA  339 (450)
T ss_dssp             HTTSCHHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHH
T ss_pred             HhhCChHHHHHHHHCccHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHH
Confidence            9998888778888999999999999998 999999999999999988888888899999999999999999999999999


Q ss_pred             HHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHH
Q 043116          346 WVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK  425 (482)
Q Consensus       346 ~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  425 (482)
                      ++|++++..++++....+.+.|+++.|++++++++++++..++++|.+++..++...... ....+++...+.+.|+++.
T Consensus       340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~-~~~~~~~~~~l~~~g~~~~  418 (450)
T 2jdq_A          340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRN-GTGINPYCALIEEAYGLDK  418 (450)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHS-CSCCCHHHHHHHHHHCHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhcc-ccchhHHHHHHHHcCcHHH
Confidence            999999987678888888899999999999999999999999999999998776532110 0124578999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116          426 IENLQSHDNNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       426 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      |..++++++.++++.|..++++||++++++
T Consensus       419 l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  448 (450)
T 2jdq_A          419 IEFLQSHENQEIYQKAFDLIEHYFGTEDED  448 (450)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHCCC---
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHCCccccc
Confidence            999999999999999999999999887654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=7.5e-41  Score=333.41  Aligned_cols=372  Identities=24%  Similarity=0.358  Sum_probs=330.0

Q ss_pred             hhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           23 QSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      ....|.+|.|+++|+ ++++.++..|+|+|.+++++. ......+++.|++|.|+.++.+++ +++++.|+|+|+|++.+
T Consensus       115 ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~-~~v~e~A~~aL~nLa~~  192 (529)
T 3tpo_A          115 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGA  192 (529)
T ss_dssp             HHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcc
Confidence            446789999999997 556999999999999999886 566788999999999999999999 99999999999999999


Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA  176 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  176 (482)
                      +++.+..+.+.|+++.|+.++...+     ..+.+.++|++++++.+...........++++.|+.++ .+.+++++..+
T Consensus       193 ~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~a  271 (529)
T 3tpo_A          193 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADS  271 (529)
T ss_dssp             CHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHT-TSSCHHHHHHH
T ss_pred             CHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHh-cCCcHHHHHHH
Confidence            9999999999999999999998654     45778999999999976654444455567899999999 77888999999


Q ss_pred             HHHHHHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhh
Q 043116          177 TWTLSNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV  255 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  255 (482)
                      +|+|.+++...+... .....|++|.|+.++.++++.++..++++|++++.+++.....+.+.|+++.|+.++.++++.+
T Consensus       272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i  351 (529)
T 3tpo_A          272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI  351 (529)
T ss_dssp             HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred             HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHH
Confidence            999999998763322 2334689999999999999999999999999999998888889999999999999999999999


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      +..|+|+|+|++.+++.....+.+.|+++.|+.++.++ +.+++++|+|+|+|++. ++++.+..+++.|+++.|+++|.
T Consensus       352 ~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~  430 (529)
T 3tpo_A          352 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS  430 (529)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhc
Confidence            99999999999999999889999999999999999999 99999999999999997 67888899999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhhcC----CC-HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          335 DAEFGTKKEAAWVISNATSG----GT-HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       335 ~~~~~~~~~a~~aL~~l~~~----~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      +.+++++..++++|.++...    +. ......+.+.|+++.|..+..+++.+++.+|..+|.++|...
T Consensus       431 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  499 (529)
T 3tpo_A          431 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  499 (529)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHHHHHHHHHHHHHHC---
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999742    22 334456678899999999999999999999999999998643

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=3.6e-41  Score=333.67  Aligned_cols=372  Identities=24%  Similarity=0.363  Sum_probs=329.1

Q ss_pred             hhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           23 QSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      ....|+||.|+++|+ ++++.+|..|+|+|.|+++++ .+..+.+++.|++|.|+.+|++++ +++++.|+|+|+|++.+
T Consensus        96 ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~-~~v~e~A~~aL~nLa~d  173 (510)
T 3ul1_B           96 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGD  173 (510)
T ss_dssp             HHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhC
Confidence            345689999999997 556999999999999999876 677888999999999999999999 99999999999999999


Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA  176 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  176 (482)
                      +++.+..+.+.|+++.|+.++...+     ..+.+.++|++++++.............++++.|+.++ .+.+.+++..+
T Consensus       174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL-~~~~~~v~~~A  252 (510)
T 3ul1_B          174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADS  252 (510)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred             CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHH-hcCCHHHHHHH
Confidence            9999999999999999999998654     45778899999999976644444445567889999999 77888999999


Q ss_pred             HHHHHHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhh
Q 043116          177 TWTLSNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV  255 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  255 (482)
                      +|+|.+|+...+... .....|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.+|.++++.+
T Consensus       253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v  332 (510)
T 3ul1_B          253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI  332 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHH
T ss_pred             HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHH
Confidence            999999998753322 2234689999999999999999999999999999999888889999999999999999999999


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      +..|+|+|+|++.+++.....+.+.|+++.|+.++.++ +.++|++|+|+|+|++. ++++++..+++.|+++.|+++|.
T Consensus       333 ~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~  411 (510)
T 3ul1_B          333 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS  411 (510)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhc
Confidence            99999999999999999899999999999999999999 99999999999999998 67888899999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhhcC----C-CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          335 DAEFGTKKEAAWVISNATSG----G-THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       335 ~~~~~~~~~a~~aL~~l~~~----~-~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      +.+++++..++++|.|+...    + .......+.+.|+++.|..+..+++.+++++|..+|.++|...
T Consensus       412 ~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~i~~~A~~iie~yf~~~  480 (510)
T 3ul1_B          412 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE  480 (510)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC--
T ss_pred             CCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc
Confidence            99999999999999999752    1 2334555667899999999999999999999999999998643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=1.9e-38  Score=320.25  Aligned_cols=367  Identities=15%  Similarity=0.137  Sum_probs=318.0

Q ss_pred             ccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           27 EILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        27 ~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      ..++.++++|.++  +++++..|++.|.+++...  +....++ +.|++|.|+.++++++ +.++..|+++|+|++.+.+
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s~d-~~i~~~al~~L~NLt~~~d  453 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARGGN-QSCLYGVVTTFVNLCNAYE  453 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCCCC-hHHHHHHHHHHHHHcCCch
Confidence            4478889999877  8999999999999998763  4455555 6899999999999988 8999999999999998542


Q ss_pred             -----------------------------HhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116          104 -----------------------------ENT---KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV  151 (482)
Q Consensus       104 -----------------------------~~~---~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  151 (482)
                                                   ..+   +.+++.|+++.|+.++.++++.+++.|+|+|+|++. ++.++..+
T Consensus       454 ~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~V  532 (810)
T 3now_A          454 KQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKV  532 (810)
T ss_dssp             CCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHH
T ss_pred             hhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Confidence                                         122   678899999999999999999999999999999995 46689999


Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC-h--hhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccC
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-F--NQIRPALRVLAQLIRSND-EKVLTDACRALAYLADG  227 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~-~--~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~  227 (482)
                      .+.|++++|+.++ .+.+...++.|+|+|.+++....... +  ....+++|.|+.+|.++. ...+..++++|.|++..
T Consensus       533 v~~Gaip~Lv~LL-~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~  611 (810)
T 3now_A          533 VQEGGVKALLRMA-LEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM  611 (810)
T ss_dssp             HHTTHHHHHHHHH-HSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTS
T ss_pred             HHCCCHHHHHHHH-ccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcC
Confidence            9999999999999 55667889999999999997642111 1  123578999999998653 34457899999999998


Q ss_pred             CcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHh-cCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116          228 TNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIIN-CGALRYLLGLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       228 ~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~v~~~a~~~L  306 (482)
                      +++..+.+++.|+++.|+.++.++++.++..|+++|+|++.+.+. ...+.+ .|.++.|+.++.++ +..+|++|+|+|
T Consensus       612 ~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~-~~~~v~~~g~l~~Lv~LL~s~-d~~vq~~Aa~AL  689 (810)
T 3now_A          612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDV-IKMFEGNNDRVKFLALLCEDE-DEETATACAGAL  689 (810)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHH-HHHHHSSSSHHHHHHHGGGCS-SHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHH-HHHHHhccCcHHHHHHHhcCC-CHHHHHHHHHHH
Confidence            888888899999999999999999999999999999999985554 444554 78999999999998 999999999999


Q ss_pred             HHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC---CHH
Q 043116          307 SNITAGNREQIQAVID-AGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP---DPQ  382 (482)
Q Consensus       307 ~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~---~~~  382 (482)
                      +|++.+++...+.+++ .|+++.|++++.+++.+++..|+|+|.|++.. +++....+.+.|+++.|..+++.+   +++
T Consensus       690 anLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~-s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~  768 (810)
T 3now_A          690 AIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA-GEEIAKKLFETDIMELLSGLGQLPDDTRAK  768 (810)
T ss_dssp             HHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT-CHHHHHHHHTSTHHHHHTTSCCCTTSTTHH
T ss_pred             HHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC-CHHHHHHHHHCCCHHHHHHHHhCcccCcHH
Confidence            9999878888999998 89999999999999999999999999999984 678899999999999999999755   689


Q ss_pred             HHHHHHHHHHHHHHhchhc
Q 043116          383 IVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       383 v~~~~l~~L~~l~~~~~~~  401 (482)
                      +++.++++|.++++.+.-.
T Consensus       769 i~e~Al~aL~~ll~~g~~~  787 (810)
T 3now_A          769 AREVATQCLAAAERYRIIE  787 (810)
T ss_dssp             HHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHHhCCCcc
Confidence            9999999999999876553

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=4.4e-38  Score=301.22  Aligned_cols=374  Identities=18%  Similarity=0.207  Sum_probs=297.0

Q ss_pred             hchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCC-----------hH
Q 043116           18 LSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY-----------PQ   86 (482)
Q Consensus        18 ~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~-----------~~   86 (482)
                      ....+..+...++.|+..+.+.++.-   ..+.|..+...  .+.+..+++.|.+|.|+++|+..+.           ++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~ll~~~~~--~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~   97 (458)
T 3nmz_A           23 LTSHLGTKVEMVYSLLSMLGTHDKDD---MSRTLLAMSSS--QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKE   97 (458)
T ss_dssp             ----------------------CCHH---HHHHHHHHHSS--TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHH
T ss_pred             cccccCchHHHHHHHHHHhcCCCHHH---HHHHHHHHHcC--CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHH
Confidence            34456778888999999999888763   56677777665  4556889999999999999997542           69


Q ss_pred             HHHHHHHHHHHHhCCChHhHHHHHhCCCh----------HHHHHhhCCCC--HH-----HHH-------HHHHHHHHhhC
Q 043116           87 LQFEAARALTNIASGTSENTKVAIDHGAV----------PIFVKLLASPS--DD-----VRE-------QAVWALGNVAG  142 (482)
Q Consensus        87 v~~~a~~~L~~l~~~~~~~~~~~~~~g~i----------~~L~~ll~~~~--~~-----~~~-------~a~~~L~~l~~  142 (482)
                      ++..|+|+|.||+.+.++..+...+.+++          +.+++++.+..  .+     +++       +|+|+|+|++.
T Consensus        98 ~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~  177 (458)
T 3nmz_A           98 ARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF  177 (458)
T ss_dssp             HHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC
Confidence            99999999999999888888887787777          66677776542  12     444       89999999985


Q ss_pred             CChhhHHHHHHhCChHHHHHHHcc----------hhhhhHHHHHHHHHHHhhcCCCCCChhh--hhhHHHHHHHHhccCC
Q 043116          143 DSSRCRDFVLSQGALIPLLAELNE----------HAKLSMLRTATWTLSNFCRGKPQPPFNQ--IRPALRVLAQLIRSND  210 (482)
Q Consensus       143 ~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~ll~~~~  210 (482)
                      + +++|+.+.+.|++++|+.++..          ..++.+++.|+|+|.||+...+.....+  ..|++|.|+.+|.+++
T Consensus       178 ~-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~  256 (458)
T 3nmz_A          178 D-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSES  256 (458)
T ss_dssp             S-HHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSC
T ss_pred             C-HHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCC
Confidence            5 8899999999999999999942          2456789999999999998864333233  3577999999999999


Q ss_pred             hhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHHH-hcCchHHHH
Q 043116          211 EKVLTDACRALAYLADG-TNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCII-NCGALRYLL  287 (482)
Q Consensus       211 ~~~~~~~l~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~  287 (482)
                      ++++..++++|++++.. ++.....+.+.|+++.|+.+| .++++.++..++.+|+||+.+++.....+. ..|+++.|+
T Consensus       257 ~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv  336 (458)
T 3nmz_A          257 EDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLV  336 (458)
T ss_dssp             HHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHH
Confidence            99999999999999975 556777888999999999975 667889999999999999985555445555 789999999


Q ss_pred             HHhcCCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116          288 GLLIHNHNK---SIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK  361 (482)
Q Consensus       288 ~ll~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~  361 (482)
                      .+|.+..+.   .+++.|+|+|.|++.   ++++..+.+.+.|+++.|+.+|.+++..+++.|+++|.|++.. ++++..
T Consensus       337 ~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~-~~~~~~  415 (458)
T 3nmz_A          337 GTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQE  415 (458)
T ss_dssp             HHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSS-CHHHHH
T ss_pred             HHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcC-CHHHHH
Confidence            999987332   499999999999997   7888899999999999999999999999999999999999964 788899


Q ss_pred             HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          362 HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       362 ~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+.+.|+++.|++++.++++++++.+.++|.+++...
T Consensus       416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=5.1e-37  Score=307.48  Aligned_cols=402  Identities=17%  Similarity=0.180  Sum_probs=343.5

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ..|.+|.|+++++++++.++..|+++|.+++... ......+.+.|++|.|+.++.+++ ++++..++.+|.+++.++++
T Consensus        99 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~-~~~~~~~~~~L~~la~~~~~  176 (529)
T 1jdh_A           99 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE  176 (529)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHHhCCHH
Confidence            4589999999999999999999999999999875 455777779999999999999988 89999999999999998899


Q ss_pred             hHHHHHhCCChHHHHHhhCCC-CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFVKLLASP-SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      .+..+.+.|+++.|+.++++. +...+..+..+|.+++. .+..+..+.+.|+++.++.++ .+.+..++..++|+|.++
T Consensus       177 ~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~L~~l  254 (529)
T 1jdh_A          177 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL  254 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-STTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hCCChHHHHHHHHHHHHH
Confidence            999999999999999999865 45677788999999995 456788888999999999999 556889999999999999


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALR  261 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~  261 (482)
                      +...+..  ....+++|.++.++.+++++++..++++|++++..+++....+.+.|+++.++.++.+  .++.++..+++
T Consensus       255 ~~~~~~~--~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~  332 (529)
T 1jdh_A          255 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  332 (529)
T ss_dssp             HTTCTTC--SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcCChhh--HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHH
Confidence            9876432  2346899999999999999999999999999998887788889999999999999975  34789999999


Q ss_pred             HHhHhhcCChh---hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116          262 TIGNIVTGDDF---QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF  338 (482)
Q Consensus       262 ~L~~l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  338 (482)
                      +|++++..++.   ....+.+.|+++.|+.++.++.++.++..++|+|+|++.+.. ....+.+.|+++.|++++.++++
T Consensus       333 ~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~  411 (529)
T 1jdh_A          333 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ  411 (529)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence            99999986543   355788899999999999998446899999999999998544 45788899999999999998888


Q ss_pred             hHHHHHHHHHHH----------------------hhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          339 GTKKEAAWVISN----------------------ATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       339 ~~~~~a~~aL~~----------------------l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                      ++++.++|++.|                      ++.  +++....+.+.|+++.|+.++.+++++++..+.++|.++..
T Consensus       412 ~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L~~--~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~  489 (529)
T 1jdh_A          412 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  489 (529)
T ss_dssp             HHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcccCchhhhccccHHHHHHHHHHHHHHHhc--CchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhc
Confidence            888766666555                      544  45666778899999999999999999999999999999873


Q ss_pred             hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043116          397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  448 (482)
                      .             +.++..+.+.|+++.|.+++.+++++|++.|.+++.++
T Consensus       490 ~-------------~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          490 D-------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             S-------------HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             C-------------HHHHHHHHHcCChHHHHHHhcCCCHHHHHHHHHHHHhc
Confidence            2             22478889999999999999999999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.3e-37  Score=303.58  Aligned_cols=365  Identities=18%  Similarity=0.198  Sum_probs=308.6

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDF  150 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~  150 (482)
                      .+|.++.+|++++ ++++..|+++|.+++.+++..+..+.+.|+++.|+++|+++++.++..|+|+|.|++.+++..+..
T Consensus         3 ~l~~lv~~L~s~~-~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5899999999999 899999999999999878888889999999999999999999999999999999999887889999


Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc--------c--------CChhHH
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR--------S--------NDEKVL  214 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~--------~--------~~~~~~  214 (482)
                      +.+.|+++.|+.+|..+.+.++++.++|+|+||+... .....+..|++|.|+.++.        +        .++++.
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            9999999999999954778899999999999999984 3333333499999999993        2        246677


Q ss_pred             HHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCC-----------------
Q 043116          215 TDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGD-----------------  270 (482)
Q Consensus       215 ~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~-----------------  270 (482)
                      ..++++|+|++.. ++....+.+. |+++.|+.+|.+      .+..++..++.+|.+++...                 
T Consensus       161 ~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~  239 (457)
T 1xm9_A          161 FNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccc
Confidence            7999999999987 6777788887 999999999975      45678888999999987311                 


Q ss_pred             ---------------------------------hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 043116          271 ---------------------------------DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE--  315 (482)
Q Consensus       271 ---------------------------------~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~--  315 (482)
                                                       +...+.+++.++++.++.+|.++.++.++..|+|+|+|++.++..  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             ccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             112234556678999999998876899999999999999985432  


Q ss_pred             -HH-HHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH------HHHHH
Q 043116          316 -QI-QAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP------QIVTV  386 (482)
Q Consensus       316 -~~-~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~------~v~~~  386 (482)
                       .. +..+ +.|++|.|++++.+++.++++.|+|+|.|++.+  ++ ...++..|+++.|++++..+++      ++...
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~--~~-~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~  396 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PL-LHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GG-GHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC--HH-HHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHH
Confidence             22 4445 689999999999999999999999999999884  33 3455667899999999998643      68889


Q ss_pred             HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhcCCCC
Q 043116          387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       387 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~~~~~  453 (482)
                      ++.+|.+++...+            .....+.+.|+++.|.+|+.++ ++++++.|.++|.+||..++
T Consensus       397 ~l~~l~ni~~~~~------------~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          397 ACYTVRNLMASQP------------QLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHTTCT------------HHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHhcCH------------HHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            9999999985432            2578888999999999999999 99999999999999998765

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=9.2e-36  Score=304.20  Aligned_cols=397  Identities=16%  Similarity=0.180  Sum_probs=342.7

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ..+.++.|+++++++++.++..|+++|.+++... ......+.+.|+++.|+.+|++++ ++++..++.+|.+++..+++
T Consensus        96 ~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~La~~~~~  173 (644)
T 2z6h_A           96 KSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE  173 (644)
T ss_dssp             TTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCC-HHHHHHHHHHHHHHHhcCcH
Confidence            4589999999999999999999999999999875 556777789999999999999998 89999999999999988899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      .+..+.+.|+++.|++++++.+ ..++..++.+|.+++. .+..+..+.+.|+++.++.++ .+.+..++..++|+|.++
T Consensus       174 ~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~-~~~~~~~l~~~g~l~~L~~ll-~~~~~~~~~~a~~~L~nL  251 (644)
T 2z6h_A          174 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL  251 (644)
T ss_dssp             HHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT-CTTHHHHHHHTTHHHHHHTTT-TCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhc-CcccHHHHHHCCCHHHHHHHH-hcCCHHHHHHHHHHHHHH
Confidence            9999999999999999998754 6788899999999995 456788899999999999999 556789999999999999


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALR  261 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~  261 (482)
                      +...+..  ....++++.|+.++.+.+++++..++++|.+++..++.....+.+.|+++.|+.++.+.  .+.++..|++
T Consensus       252 ~~~~~~~--~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~  329 (644)
T 2z6h_A          252 SDAATKQ--EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  329 (644)
T ss_dssp             GGGCTTC--CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhcchhh--hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHH
Confidence            9876332  33468999999999999999999999999999988878888899999999999999763  3789999999


Q ss_pred             HHhHhhcCCh---hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC-
Q 043116          262 TIGNIVTGDD---FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE-  337 (482)
Q Consensus       262 ~L~~l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-  337 (482)
                      +|++++..++   .....+.+.|+++.|+++|.++.++.+++.++|+|+|++.+... .+.+.+.|+++.|++++.+.+ 
T Consensus       330 aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~-~~~i~~~~~i~~Lv~lL~~~~~  408 (644)
T 2z6h_A          330 ALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPAN-HAPLREQGAIPRLVQLLVRAHQ  408 (644)
T ss_dssp             HHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGG-HHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHH-HHHHHHcCCHHHHHHHHhccch
Confidence            9999997544   23344778899999999999884578999999999999986444 478889999999999998643 


Q ss_pred             ---------------------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          338 ---------------------FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       338 ---------------------~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                                           .+++..++.+|.+++.  ++.....+.+.|+++.|++++.+++++++..+..+|.++..
T Consensus       409 ~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          409 DTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             HHTTC----------CCSSCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             hhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc--CHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                                 4566677778888876  45677788899999999999999999999999999999874


Q ss_pred             hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHH
Q 043116          397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK  443 (482)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~  443 (482)
                      .             +..+..+.+.|+++.|.+++.++++++++.|.+
T Consensus       487 ~-------------~~~~~~i~~~g~l~~L~~ll~~~~~~vr~~A~~  520 (644)
T 2z6h_A          487 D-------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAA  520 (644)
T ss_dssp             S-------------HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHH
T ss_pred             C-------------HHHHHHHHHcCChhHHHHHHcCCCHHHHHHHHH
Confidence            2             124788899999999999999999999654333

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=4.9e-37  Score=306.99  Aligned_cols=370  Identities=23%  Similarity=0.320  Sum_probs=328.3

Q ss_pred             hhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           25 KFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      ..+.+|.|+++++++ ++.++..|+++|.+++... .+....++..|+++.|+.+|.+++ ++++..|+++|++++.+++
T Consensus       128 ~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~vr~~A~~aL~~l~~~~~  205 (530)
T 1wa5_B          128 QAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDST  205 (530)
T ss_dssp             HTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTCH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCc
Confidence            468999999999987 8999999999999999875 456777889999999999999988 9999999999999999888


Q ss_pred             HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      +.+..+...|+++.|+.++.+.++.++..|+|+|++++... +.. ......++++.|+.++ .+.++.++..++|+|.+
T Consensus       206 ~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~lL-~~~d~~v~~~a~~~L~~  283 (530)
T 1wa5_B          206 DYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQP-DWSVVSQALPTLAKLI-YSMDTETLVDACWAISY  283 (530)
T ss_dssp             HHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCC-CHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred             cchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCC-cHHHHHhHHHHHHHHH-cCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999765 332 3445678999999999 66788999999999999


Q ss_pred             hhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 043116          183 FCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR  261 (482)
Q Consensus       183 L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  261 (482)
                      ++...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+.+.|+++.++.+|.++++.++..|++
T Consensus       284 L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~  363 (530)
T 1wa5_B          284 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW  363 (530)
T ss_dssp             HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHH
Confidence            99875322 22223589999999999999999999999999999888888888889999999999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCH--HHHHHHHHcCChHHHHHHHhcCCh
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNR--EQIQAVIDAGLIGPIVNLLQDAEF  338 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~--~~~~~l~~~~~i~~L~~ll~~~~~  338 (482)
                      +|++++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++. +.+  +..+.+++.|+++.|+.++.++++
T Consensus       364 aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  442 (530)
T 1wa5_B          364 TISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN  442 (530)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCH
Confidence            99999998888888888999999999999988 99999999999999998 455  778889999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116          339 GTKKEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE  399 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~  399 (482)
                      .++..++++|.+++..++.          .....+.+.|+++.|..++.+++++++..+..+|.+++...+
T Consensus       443 ~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~~~  513 (530)
T 1wa5_B          443 RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEE  513 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCccc
Confidence            9999999999999874322          245667888999999999999999999999999999986543

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=6.3e-37  Score=309.15  Aligned_cols=416  Identities=16%  Similarity=0.143  Sum_probs=340.5

Q ss_pred             chhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 043116           16 PALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARAL   95 (482)
Q Consensus        16 ~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L   95 (482)
                      .+....+....|.++.|+.++.++++.++..|++++.++++.  ...++.+++.|+ +.|..++++++ +.++..|+.+|
T Consensus       279 ~~~~~~~~~~~G~v~~li~Ll~s~~~~~q~~A~~al~~aa~~--~~~R~~I~~~gv-~~L~~Ll~s~~-~~vr~~Al~~L  354 (810)
T 3now_A          279 LDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSK--KDKAKALCEQGV-DILKRLYHSKN-DGIRVRALVGL  354 (810)
T ss_dssp             HHHHHHHHHTTTHHHHHHHHHHSSCHHHHHHHHHHHHHHTTS--HHHHHTTHHHHH-HHHHHHTTCSC-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--cHHHHHHHHcCc-HHHHHHHcCCC-HHHHHHHHHHH
Confidence            334444555679999999999999999999999999998776  567888888875 99999999888 89999999999


Q ss_pred             HHHhCCCh-HhHHHHHhCCC----hHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh
Q 043116           96 TNIASGTS-ENTKVAIDHGA----VPIFVKLLASP--SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA  168 (482)
Q Consensus        96 ~~l~~~~~-~~~~~~~~~g~----i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~  168 (482)
                      ++++.... +.....++.|.    ++.|.++|.++  +++++..|+|+|.+++.+.+.......+.|+++.|+.++ .+.
T Consensus       355 ~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL-~s~  433 (810)
T 3now_A          355 CKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLA-RGG  433 (810)
T ss_dssp             HHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHH-HTT
T ss_pred             HHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHh-CCC
Confidence            99975321 22222233343    56788888877  889999999999999966554444444679999999999 567


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCC---------------------------------ChhhhhhHHHHHHHHhccCChhHHH
Q 043116          169 KLSMLRTATWTLSNFCRGKPQP---------------------------------PFNQIRPALRVLAQLIRSNDEKVLT  215 (482)
Q Consensus       169 ~~~~~~~a~~~L~~L~~~~~~~---------------------------------~~~~~~~~~~~L~~ll~~~~~~~~~  215 (482)
                      +..++..++|+|.||+.+.+..                                 ......|++|.|+.++.++++.++.
T Consensus       434 d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe  513 (810)
T 3now_A          434 NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQE  513 (810)
T ss_dssp             CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHH
T ss_pred             ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHH
Confidence            8899999999999999854211                                 1112358999999999999999999


Q ss_pred             HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHH-HHhcCchHHHHHHhcCC
Q 043116          216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQC-IINCGALRYLLGLLIHN  293 (482)
Q Consensus       216 ~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~-l~~~~~i~~L~~ll~~~  293 (482)
                      .++|+|+|++. +++....+++.|+++.|+.+|.++++..+..|+++|++++.+. +..... ....++++.|+.+|.++
T Consensus       514 ~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~  592 (810)
T 3now_A          514 LIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQD  592 (810)
T ss_dssp             HHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTT
T ss_pred             HHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCC
Confidence            99999999995 5668888999999999999999999999999999999998753 322100 01136899999999866


Q ss_pred             CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH-cCChHHH
Q 043116          294 HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR-EGCVKPL  372 (482)
Q Consensus       294 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~-~~~l~~L  372 (482)
                      .+...+.+|+|+|.|++.++++..+.+++.|+++.|+.++.++++.++..|+++|+|++.  .++....+.+ .|.++.|
T Consensus       593 ~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~--~~~~~~~~v~~~g~l~~L  670 (810)
T 3now_A          593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM--SEDVIKMFEGNNDRVKFL  670 (810)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTT--SHHHHHHHHSSSSHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC--ChHHHHHHHhccCcHHHH
Confidence            344556799999999999888888899999999999999999999999999999999998  4556666665 6899999


Q ss_pred             HhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHH-hchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          373 CDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEE-AEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       373 ~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      +.++++++..++..+.++|.++....+..            .+.+.+ .|+++.|.++..+++.+++..|.+.+.++...
T Consensus       671 v~LL~s~d~~vq~~Aa~ALanLt~~s~~~------------~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~  738 (810)
T 3now_A          671 ALLCEDEDEETATACAGALAIITSVSVKC------------CEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINA  738 (810)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHHHHHCHHH------------HHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTT
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHhCCCHHH------------HHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998642221            333445 89999999999999999999999999988764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=3.2e-37  Score=308.41  Aligned_cols=371  Identities=24%  Similarity=0.316  Sum_probs=329.0

Q ss_pred             hhccHHHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           25 KFEILPTMVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      ..+.+|.|++++++++ +.++..|+++|.+++... .+....++..|+++.|+.+|.+++ ++++..|+++|++++.+++
T Consensus       115 ~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~aL~~l~~~~~  192 (528)
T 4b8j_A          115 QSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSS-DDVREQAVWALGNVAGDSP  192 (528)
T ss_dssp             HTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHTCH
T ss_pred             HCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCC-HHHHHHHHHHHHHHhCCCh
Confidence            4579999999999876 999999999999999875 566788889999999999999988 9999999999999999889


Q ss_pred             HhHHHHHhCCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          104 ENTKVAIDHGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      ..+..+.+.|+++.|+.++ .+.++.++..++|+|++++...+.. ......++++.|+.++ .+.+..++..++|+|.+
T Consensus       193 ~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~-~~~~~~~~l~~L~~lL-~~~~~~v~~~a~~aL~~  270 (528)
T 4b8j_A          193 KCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQP-SFEQTRPALPALARLI-HSNDEEVLTDACWALSY  270 (528)
T ss_dssp             HHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCC-CHHHHTTHHHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCC-cHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHH
Confidence            9999999999999999999 6788999999999999999765433 2334578999999999 67789999999999999


Q ss_pred             hhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHHH
Q 043116          183 FCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAAL  260 (482)
Q Consensus       183 L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~  260 (482)
                      ++...+.. ......++++.|+.++.++++.++..++++|++++...+...+.+.+.|+++.|+.+|.++ ++.++..|+
T Consensus       271 l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~  350 (528)
T 4b8j_A          271 LSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEAC  350 (528)
T ss_dssp             HTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHH
Confidence            99775322 2223468999999999999999999999999999998888888899999999999999998 899999999


Q ss_pred             HHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChh
Q 043116          261 RTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFG  339 (482)
Q Consensus       261 ~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~  339 (482)
                      ++|+|++.+++.....+++.|+++.|+.++.++ ++.++..|+|+|+|++.. +++....+++.|+++.|+.++.+++++
T Consensus       351 ~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~  429 (528)
T 4b8j_A          351 WTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIR  429 (528)
T ss_dssp             HHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHH
T ss_pred             HHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHH
Confidence            999999998888888899999999999999999 999999999999999984 788889999999999999999999999


Q ss_pred             HHHHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          340 TKKEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       340 ~~~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      ++..++++|.+++..+..          .....+.+.|+++.|..+.++++++++..+..++.+++...+.
T Consensus       430 v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~~~~v~~~a~~il~~~~~~e~~  500 (528)
T 4b8j_A          430 IVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHDNNEIYEKAVKILEAYWMDEED  500 (528)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCCccc
Confidence            999999999999874322          2466778889999999999999999999999999999865433

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=7.2e-38  Score=305.28  Aligned_cols=363  Identities=17%  Similarity=0.198  Sum_probs=303.5

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .+|.++++|+++++.+|..|+++|.+++..+ ......+.+.|++|.|+++|++++ ++++..|+++|.|++.++++++.
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~-~~~~~~A~~aL~nLa~~~~~~k~   80 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHHHHH
Confidence            5899999999999999999999999998764 444568889999999999999988 99999999999999998899999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc--------h-------hhhh
Q 043116          108 VAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE--------H-------AKLS  171 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------~-------~~~~  171 (482)
                      .+++.|+++.|+++|. ++++++++.|+|+|+|++.+ +..+..+.+ |+++.|+.++..        .       .+..
T Consensus        81 ~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~  158 (457)
T 1xm9_A           81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHH
Confidence            9999999999999999 88999999999999999977 667888888 999999999931        1       2467


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhhh-h-hHHHHHHHHhcc------CChhHHHHHHHHHHHhccCC---------------
Q 043116          172 MLRTATWTLSNFCRGKPQPPFNQI-R-PALRVLAQLIRS------NDEKVLTDACRALAYLADGT---------------  228 (482)
Q Consensus       172 ~~~~a~~~L~~L~~~~~~~~~~~~-~-~~~~~L~~ll~~------~~~~~~~~~l~~L~~l~~~~---------------  228 (482)
                      +++.++|+|+||+.. +.....+. . |+++.|+.++.+      .+..++..++.+|.+++...               
T Consensus       159 v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~  237 (457)
T 1xm9_A          159 VFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA  237 (457)
T ss_dssp             HHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC
T ss_pred             HHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccc
Confidence            788999999999987 32222223 3 999999999985      46678888999999886310               


Q ss_pred             -----------------------------------cHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChh
Q 043116          229 -----------------------------------NDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       229 -----------------------------------~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~  272 (482)
                                                         +...+.+++.++++.++.+|.+ .++.+++.|+|+|+|++.++..
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~  317 (457)
T 1xm9_A          238 RNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGL  317 (457)
T ss_dssp             ----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSS
T ss_pred             ccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCc
Confidence                                               1122334556778889999865 4688999999999999986643


Q ss_pred             h---H-HHH-HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCCh------hHH
Q 043116          273 Q---T-QCI-INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEF------GTK  341 (482)
Q Consensus       273 ~---~-~~l-~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~------~~~  341 (482)
                      .   . +.+ .+.|+++.|+++|.++ +.+++++|+|+|.|++.+ + ..+.++..|+++.|+++|..+++      ++.
T Consensus       318 ~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~-~-~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~  394 (457)
T 1xm9_A          318 MSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-P-LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDIL  394 (457)
T ss_dssp             HHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-G-GGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHH
T ss_pred             chHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcC-H-HHHHHHHHhhhHHHHHhccCCCCCCCCcHHHH
Confidence            2   1 333 4689999999999999 999999999999999874 3 34566677899999999997643      688


Q ss_pred             HHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhch
Q 043116          342 KEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGE  399 (482)
Q Consensus       342 ~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~  399 (482)
                      ..++++|.++... +++....+.+.|+++.|++++.++ ++++++.|.++|.+++...+
T Consensus       395 ~~~l~~l~ni~~~-~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          395 SSACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHHHHHHHHHHhc-CHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            8999999999875 567888888999999999999999 99999999999999986543

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.2e-37  Score=301.71  Aligned_cols=366  Identities=23%  Similarity=0.289  Sum_probs=323.4

Q ss_pred             ccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           27 EILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        27 ~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      +.+|.|++.++++ ++.++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~-~~vr~~a~~~L~~l~~~~~~~  141 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF-EDVQEQAVWALGNIAGDSTMC  141 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC-HHHHHHHHHHHHHHccCCHHH
Confidence            7899999999988 8999999999999999865 455677788999999999999998 999999999999999988899


Q ss_pred             HHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          106 TKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      +..+.+.|+++.|+.++.+ .+..++..|+|+|++++... +..+.... .++++.++.++ .+.+..++..++|+|.++
T Consensus       142 ~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l-~~~~~~v~~~a~~~L~~l  219 (450)
T 2jdq_A          142 RDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLL-FVSDTDVLADACWALSYL  219 (450)
T ss_dssp             HHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHT-TCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHH-ccCCHHHHHHHHHHHHHH
Confidence            9999999999999999995 78999999999999999654 33222222 67899999999 667889999999999999


Q ss_pred             hcCCCC-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          184 CRGKPQ-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       184 ~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      +...+. .......+++|.++.++.++++.++..++++|++++...+...+.+.+.|+++.++.++.++++.++..|+++
T Consensus       220 ~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~  299 (450)
T 2jdq_A          220 SDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWT  299 (450)
T ss_dssp             TSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHH
Confidence            986522 2222336899999999999999999999999999999888777778888999999999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTK  341 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~  341 (482)
                      |++++.+++...+.+++.|+++.++.++.++ ++.+|..|+|+|+|++.+ +++..+.+++.|+++.|++++.+++++++
T Consensus       300 L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~  378 (450)
T 2jdq_A          300 ISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIV  378 (450)
T ss_dssp             HHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHH
Confidence            9999998888888888899999999999998 999999999999999974 77888888999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCH----------HHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          342 KEAAWVISNATSGGTH----------EQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       342 ~~a~~aL~~l~~~~~~----------~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..++++|.+++..+..          .....+.+.|+++.|..++.+++++++..+..+|.+++..
T Consensus       379 ~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  444 (450)
T 2jdq_A          379 QVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGT  444 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence            9999999999874322          2346677889999999999999999999999999999954

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.8e-36  Score=296.13  Aligned_cols=366  Identities=18%  Similarity=0.191  Sum_probs=303.7

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC-Ch
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG-TS  103 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~-~~  103 (482)
                      ..+.||.|+++|+++++.+|..|++.|.+++... .+....+++.|++|.|+++|++++ +++++.|+++|.|++.+ ++
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~-~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPK-KEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSS-HHHHHHHHHHHHHHTSSSCH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCC-HHHHHHHHHHHHHHHccCCH
Confidence            4557999999999999999999999999999865 667888899999999999999999 99999999999999985 69


Q ss_pred             HhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-----------------
Q 043116          104 ENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-----------------  165 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----------------  165 (482)
                      +++..+.+.|+++.|+++|.+ .+.++++.++++|++++. .+..+..+.+ ++++.|+.++.                 
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~  201 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPR  201 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccc
Confidence            999999999999999999996 678999999999999996 4566777775 57999999872                 


Q ss_pred             chhhhhHHHHHHHHHHHhhcCCCCCChhh--hhhHHHHHHHHhcc------CChhHHHHHHHHHHHhccCCcH-------
Q 043116          166 EHAKLSMLRTATWTLSNFCRGKPQPPFNQ--IRPALRVLAQLIRS------NDEKVLTDACRALAYLADGTND-------  230 (482)
Q Consensus       166 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~ll~~------~~~~~~~~~l~~L~~l~~~~~~-------  230 (482)
                      ...+..++.+++++|.||+...+.....+  ..|+++.|+.++++      .+...++.++++|.||+.....       
T Consensus       202 ~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~  281 (584)
T 3l6x_A          202 HIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAER  281 (584)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC
T ss_pred             ccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhh
Confidence            12256899999999999998764322222  25788899999874      4678999999999999954210       


Q ss_pred             ------------------HHHHHHHhCcHHHHHHhhC-CCChhhHHHHHHHHhHhhcCChh----hHHHHHhcCchHHHH
Q 043116          231 ------------------KIQAVIEAGVCPRLVKLLG-HRSRLVLTAALRTIGNIVTGDDF----QTQCIINCGALRYLL  287 (482)
Q Consensus       231 ------------------~~~~~~~~~~l~~L~~ll~-~~~~~v~~~a~~~L~~l~~~~~~----~~~~l~~~~~i~~L~  287 (482)
                                        ..+.+++.+.++.++.+|. +.++.+++.|+++|.||+.+...    ....+.+.++++.|+
T Consensus       282 ~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv  361 (584)
T 3l6x_A          282 YQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIA  361 (584)
T ss_dssp             --------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHH
T ss_pred             hhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHH
Confidence                              1112233455778888995 46789999999999999986532    223445678999999


Q ss_pred             HHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--------ChhHHHHHHHHHHHhhcCCCHHH
Q 043116          288 GLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--------EFGTKKEAAWVISNATSGGTHEQ  359 (482)
Q Consensus       288 ~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--------~~~~~~~a~~aL~~l~~~~~~~~  359 (482)
                      .+|.++ +..+++.|+|+|+|++.+...  +..+..|+++.|+++|.++        +.+++..|+++|.|++.. ++++
T Consensus       362 ~LL~s~-~~~v~~~A~~aL~nLs~~~~~--~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~-~~~~  437 (584)
T 3l6x_A          362 DLLTNE-HERVVKAASGALRNLAVDARN--KELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE-NLEA  437 (584)
T ss_dssp             HGGGCS-CHHHHHHHHHHHHHHHTTCSC--HHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT-CHHH
T ss_pred             HHHcCC-CHHHHHHHHHHHHHHhCChhH--HHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC-CHHH
Confidence            999999 899999999999999985432  3455789999999999875        357889999999999875 7899


Q ss_pred             HHHHHHcCChHHHHhcCCCC--CHHHHHHHHHHHHHHHHhc
Q 043116          360 IKHLVREGCVKPLCDLLPCP--DPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       360 ~~~l~~~~~l~~L~~ll~~~--~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+.+.+.|+++.|++++.+.  .+.+++.|..+|.++..+.
T Consensus       438 ~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          438 AKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             HHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             HHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence            99999999999999999976  7889999999999998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=1.6e-34  Score=299.20  Aligned_cols=407  Identities=16%  Similarity=0.167  Sum_probs=348.9

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ..++++.|+++++++++.++..|+++|.+++... ......+.+.|+++.|+.++.+++ ..++..++.+|.+++..+++
T Consensus       232 ~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~-~~v~~~a~~aL~~La~~~~e  309 (780)
T 2z6g_A          232 KSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGNQE  309 (780)
T ss_dssp             HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhcCChH
Confidence            4589999999999999999999999999999875 455666778999999999999988 89999999999999988899


Q ss_pred             hHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      .+..+.+.|+++.|+.++++.+ ...+..+..+|.+++.. +..+..+.+.|+++.|+.++ .+.+..++..++|+|.++
T Consensus       310 ~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL-~~~~~~~~~~a~~~L~~L  387 (780)
T 2z6g_A          310 SKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLRNL  387 (780)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGT-TCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHH-cCCchHHHHHHHHHHHHH
Confidence            9999999999999999999765 45667889999999954 55678888999999999999 556788999999999999


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-C-hhhHHHHHH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-S-RLVLTAALR  261 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~-~~v~~~a~~  261 (482)
                      +...+.  .....++++.|+.++.+.+++++..++++|++++..+++....+.+.|+++.|+.+|.+. + +.++..|++
T Consensus       388 ~~~~~~--~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~  465 (780)
T 2z6g_A          388 SDAATK--QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC  465 (780)
T ss_dssp             HTTCTT--CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccchh--hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence            987633  223478999999999999999999999999999998888888899999999999999763 3 489999999


Q ss_pred             HHhHhhcCChh---hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC-
Q 043116          262 TIGNIVTGDDF---QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE-  337 (482)
Q Consensus       262 ~L~~l~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~-  337 (482)
                      +|++|+..++.   ....+.+.++++.|+.+|.++.++.+++.|+|+|+|++.+ +.....+.+.|+++.|++++.+++ 
T Consensus       466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~  544 (780)
T 2z6g_A          466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQ  544 (780)
T ss_dssp             HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcch
Confidence            99999875543   2346778899999999999984459999999999999975 444577889999999999997643 


Q ss_pred             ---------------------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          338 ---------------------FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       338 ---------------------~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                                           .+++..++.+|.+++.  ++.....+.+.|+++.|++++.++++.++..+..+|.++..
T Consensus       545 ~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~--~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~  622 (780)
T 2z6g_A          545 DTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR--DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  622 (780)
T ss_dssp             HHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc--ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence                                 3466678888888886  56777788899999999999999999999999999999974


Q ss_pred             hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      .             +.++..|.+.|+++.|.+++.+++++|+..|.+.+.++..+..
T Consensus       623 ~-------------~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~  666 (780)
T 2z6g_A          623 D-------------KEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKP  666 (780)
T ss_dssp             S-------------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSC
T ss_pred             C-------------HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCh
Confidence            2             2248888999999999999999999998887777766665443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=100.00  E-value=1.2e-36  Score=304.91  Aligned_cols=434  Identities=15%  Similarity=0.166  Sum_probs=357.0

Q ss_pred             hhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           23 QSKFEILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      ....+.++.|++.+.+ +++.++..|+..|.+++..  .+....+.+.|++|.|++++++++ ++++..|+++|.+++.+
T Consensus        55 ~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~--~~~~~~i~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~  131 (529)
T 1jdh_A           55 MRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHH
T ss_pred             HhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhcC
Confidence            3445789999999974 5899999999999999876  447888889999999999999999 99999999999999997


Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS  181 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  181 (482)
                      ++..+..+.+.|+++.|++++.++++.++..+..+|.+++..++..+..+.+.|+++.++.++....+......++.+|.
T Consensus       132 ~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~  211 (529)
T 1jdh_A          132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  211 (529)
T ss_dssp             CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             CcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHH
Confidence            77888888899999999999999999999999999999998888889999999999999999966666667778999999


Q ss_pred             HhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 043116          182 NFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR  261 (482)
Q Consensus       182 ~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  261 (482)
                      +++............++++.++.++.+++++++..++++|.+++...+...   ...++++.++.++.++++.++..+++
T Consensus       212 ~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~---~~~~~i~~L~~ll~~~~~~v~~~a~~  288 (529)
T 1jdh_A          212 VLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE---GMEGLLGTLVQLLGSDDINVVTCAAG  288 (529)
T ss_dssp             HHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS---CCHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH---HHHhHHHHHHHHHcCCCHHHHHHHHH
Confidence            999765433334447999999999999999999999999999997654221   12367899999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCC
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAGNRE---QIQAVIDAGLIGPIVNLLQDAE  337 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~  337 (482)
                      +|++++..++.....+.+.|+++.|+.++.+. .++.++..|+++|+|++.++++   ....+.+.|+++.|++++.+++
T Consensus       289 ~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~  368 (529)
T 1jdh_A          289 ILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS  368 (529)
T ss_dssp             HHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTC
T ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhcccc
Confidence            99999998888888899999999999999863 2478999999999999875433   3557778999999999999876


Q ss_pred             -hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHH----------------------H
Q 043116          338 -FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLEN----------------------I  394 (482)
Q Consensus       338 -~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~----------------------l  394 (482)
                       +.++..++++|.|++..  +.....+.+.|+++.|++++.+++++++..+.+++.+                      +
T Consensus       369 ~~~v~~~a~~~l~nl~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~~~~~~~i~~~~~~al~~L  446 (529)
T 1jdh_A          369 HWPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHIL  446 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcC--hhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhccccHHHHHHHHHHHHHHH
Confidence             59999999999999974  3445788899999999999987777777655555544                      3


Q ss_pred             HHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC----------CCCCCCCCCccCC
Q 043116          395 LKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG----------RVVGPQPGLTYAG  464 (482)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~----------~~~~~~~~~~~~~  464 (482)
                      ....             ..+..+.+.|+++.|.++..+++++++..|.+.+.++..+          ...+.+.++.+++
T Consensus       447 ~~~~-------------~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L~~l~~~~  513 (529)
T 1jdh_A          447 ARDV-------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSR  513 (529)
T ss_dssp             TTSH-------------HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCS
T ss_pred             hcCc-------------hHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHHHHHhcCC
Confidence            3211             1256678899999999999999999999999999887644          2334566677777


Q ss_pred             CCCCcccCCcccc
Q 043116          465 NEGEDALGSNVIA  477 (482)
Q Consensus       465 ~~~~~~~~~~~~~  477 (482)
                      ++.++..|..+|.
T Consensus       514 ~~~v~~~a~~aL~  526 (529)
T 1jdh_A          514 NEGVATYAAAVLF  526 (529)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHH
Confidence            7777777666553

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=3.9e-35  Score=286.72  Aligned_cols=369  Identities=17%  Similarity=0.214  Sum_probs=305.3

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-Ch
Q 043116           67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SS  145 (482)
Q Consensus        67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~  145 (482)
                      ...+.++.|+.+|.+++ ++++..|+++|.+++..+++++..+.+.|+|+.|+.+|.++++.+++.|+|+|.||+.+ ++
T Consensus        45 ~~~~~i~~LV~~L~s~~-~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           45 WRQPELPEVIAMLGFRL-DAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCCHHHHHHHTTCSC-HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred             cccccHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence            35678999999999998 99999999999999988999999999999999999999999999999999999999975 68


Q ss_pred             hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------------------
Q 043116          146 RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------------------  207 (482)
Q Consensus       146 ~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------------------  207 (482)
                      ..+..+.+.|+++.|+.+|....+.++++.++++|++|+... .....+..+++|.|+.++.                  
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~-~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~  202 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHD-SIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRH  202 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSG-GGHHHHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc-hhhHHHHhccHHHHHHHHhcccccccccccccccccc
Confidence            899999999999999999965567889999999999999864 3333344678999999762                  


Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcCChhh-------
Q 043116          208 SNDEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTGDDFQ-------  273 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~~~~~-------  273 (482)
                      ..+++++..+.++|.|++..+++..+.+.+. |+++.|+.++.+      .+...++.|+++|.||+......       
T Consensus       203 ~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~  282 (584)
T 3l6x_A          203 IEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERY  282 (584)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-
T ss_pred             cccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhh
Confidence            2357999999999999998887767777775 677899999864      46679999999999999752111       


Q ss_pred             ------------------HHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH---HHHHHHH-HcCChHHHHH
Q 043116          274 ------------------TQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR---EQIQAVI-DAGLIGPIVN  331 (482)
Q Consensus       274 ------------------~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~---~~~~~l~-~~~~i~~L~~  331 (482)
                                        ...+++.++++.++.++.+..++.+++.|+|+|.|++.+..   ...+..+ +.++++.|++
T Consensus       283 ~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          283 QEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD  362 (584)
T ss_dssp             -------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence                              11223335577889999765589999999999999998642   2234344 5788999999


Q ss_pred             HHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC--------CHHHHHHHHHHHHHHHHhchhccc
Q 043116          332 LLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP--------DPQIVTVCLIGLENILKVGEAEKN  403 (482)
Q Consensus       332 ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--------~~~v~~~~l~~L~~l~~~~~~~~~  403 (482)
                      +|.+++.+++..|+++|.||+....  ... ++..|+++.|+++|.++        ..+++..++.+|.+++...+.   
T Consensus       363 LL~s~~~~v~~~A~~aL~nLs~~~~--~~~-~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~---  436 (584)
T 3l6x_A          363 LLTNEHERVVKAASGALRNLAVDAR--NKE-LIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLE---  436 (584)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTCS--CHH-HHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHH---
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCChh--HHH-HHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHH---
Confidence            9999999999999999999998543  233 44789999999999876        357888999999999854333   


Q ss_pred             cCCCCcccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCCC
Q 043116          404 TDNIGDVNQYAQLVEEAEGLEKIENLQSHD--NNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       404 ~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~~  452 (482)
                               ....+.+.|+++.|.++..+.  ++.+++.|.+++..+|...
T Consensus       437 ---------~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~  478 (584)
T 3l6x_A          437 ---------AAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK  478 (584)
T ss_dssp             ---------HHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred             ---------HHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence                     266778999999999999875  8999999999999988654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=2.3e-35  Score=282.42  Aligned_cols=331  Identities=16%  Similarity=0.167  Sum_probs=279.7

Q ss_pred             hhhhhhccHHHHHHHhcCC------------CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCH----------HHHHHh
Q 043116           21 NLQSKFEILPTMVAGVWSD------------DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVV----------PRFVEF   78 (482)
Q Consensus        21 ~~~~~~~~i~~l~~~l~s~------------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~----------~~L~~l   78 (482)
                      ...+..|.+|.|+++|+..            ++.++.+|+|+|.|++.+. ++......+.+++          +.++++
T Consensus        64 ~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~  142 (458)
T 3nmz_A           64 ISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCETCWEW  142 (458)
T ss_dssp             HHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            4567899999999999853            3799999999999999987 6677777777777          777777


Q ss_pred             hcCCC-ChH-----HHH-------HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-----------CCHHHHHHHH
Q 043116           79 LMRED-YPQ-----LQF-------EAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-----------PSDDVREQAV  134 (482)
Q Consensus        79 l~~~~-~~~-----v~~-------~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-----------~~~~~~~~a~  134 (482)
                      +.+.. ..+     +++       +|+|+|.|++. ++++|+.+.+.|++++|+.++..           .++.+++.|+
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa  221 (458)
T 3nmz_A          143 QEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAG  221 (458)
T ss_dssp             HTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHH
T ss_pred             HHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHH
Confidence            77652 122     444       99999999977 69999999999999999999942           3477899999


Q ss_pred             HHHHHhhCCChhhHHHHHH-hCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-C-CCChhhhhhHHHHHHHHh-ccCC
Q 043116          135 WALGNVAGDSSRCRDFVLS-QGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-P-QPPFNQIRPALRVLAQLI-RSND  210 (482)
Q Consensus       135 ~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-~-~~~~~~~~~~~~~L~~ll-~~~~  210 (482)
                      |+|.|++.+++..+..+.. .|+++.|+.+| .+.+++++..++|+|.||+... + ........|++|.|+.+| .+.+
T Consensus       222 ~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL-~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~  300 (458)
T 3nmz_A          222 MALTNLTFGDVANKATLCSMKGCMRALVAQL-KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKK  300 (458)
T ss_dssp             HHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCS
T ss_pred             HHHHHHhCCCcccHHHHHHcCCcHHHHHHHH-hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCC
Confidence            9999999888767766654 45699999999 6788899999999999999852 2 223333469999999975 5678


Q ss_pred             hhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhhCCCCh----hhHHHHHHHHhHhhc---CChhhHHHHHhcCc
Q 043116          211 EKVLTDACRALAYLADGTNDKIQAVI-EAGVCPRLVKLLGHRSR----LVLTAALRTIGNIVT---GDDFQTQCIINCGA  282 (482)
Q Consensus       211 ~~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~----~v~~~a~~~L~~l~~---~~~~~~~~l~~~~~  282 (482)
                      ++++..++.+|+|++.+.++....+. ..|+++.|+.+|.++++    .++..|+++|.|++.   .++.....+.+.|+
T Consensus       301 ~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~  380 (458)
T 3nmz_A          301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC  380 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHccc
Confidence            89999999999999985544445555 68999999999987654    489999999999996   67888888999999


Q ss_pred             hHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       283 i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      ++.|+.+|.++ +..++++|+|+|+|++.++++..+.+++.|+++.|++++.++++.+++.|+++|.||+.+.
T Consensus       381 i~~Lv~LL~~~-~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~  452 (458)
T 3nmz_A          381 LQTLLQHLKSH-SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR  452 (458)
T ss_dssp             HHHHHHHSSCS-CHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999998 8899999999999999888999999999999999999999999999999999999999863

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=100.00  E-value=1.5e-35  Score=302.63  Aligned_cols=433  Identities=16%  Similarity=0.181  Sum_probs=362.4

Q ss_pred             hhhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           24 SKFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        24 ~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      ...+.++.|++.|.++ ++.++..|+.+|.+++..  .+....+.+.|+++.|+++|++++ +.++..|+++|.+++...
T Consensus        53 ~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~--~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~A~~aL~nL~~~~  129 (644)
T 2z6h_A           53 RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLHNLLLHQ  129 (644)
T ss_dssp             TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS--HHHHHHHHTTTHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHS
T ss_pred             hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC--hhhHHHHHHcCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHhCc
Confidence            3457899999999864 899999999999999876  347888889999999999999998 999999999999999877


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      +..+..+.+.|+++.|++++.++++.++..++.+|.+++...+..+..+.+.|+++.|+.++........+..++.+|.+
T Consensus       130 ~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~n  209 (644)
T 2z6h_A          130 EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKV  209 (644)
T ss_dssp             TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            78888888999999999999999999999999999999987888889999999999999999766667788889999999


Q ss_pred             hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      ++............++++.++.++.+.++.++..++++|.+++...+..   ....++++.|+.++.++++.++..++++
T Consensus       210 Ls~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~a  286 (644)
T 2z6h_A          210 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGI  286 (644)
T ss_dssp             HTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHH
Confidence            9976544444445789999999999999999999999999999654321   1122678999999999999999999999


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCH--HHHH-HHHHcCChHHHHHHHhcCC-
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN-KSIKKEVCWIISNITAGNR--EQIQ-AVIDAGLIGPIVNLLQDAE-  337 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~--~~~~-~l~~~~~i~~L~~ll~~~~-  337 (482)
                      |++++..++.....+.+.|+++.|+.++.+..+ +.++..|+++|+|++...+  +..+ .+.+.|+++.|++++.+++ 
T Consensus       287 L~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~  366 (644)
T 2z6h_A          287 LSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSH  366 (644)
T ss_dssp             HHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCC
T ss_pred             HHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCc
Confidence            999999888888889999999999999987423 7899999999999987433  2233 4678899999999999765 


Q ss_pred             hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------HHHHHHHHHHHHHHH
Q 043116          338 FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD----------------------PQIVTVCLIGLENIL  395 (482)
Q Consensus       338 ~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~l~~L~~l~  395 (482)
                      +.+++.++++|.|++..  +.....+.+.|+++.|++++.+++                      .+++..++.+|.+++
T Consensus       367 ~~v~~~a~~~L~nLa~~--~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La  444 (644)
T 2z6h_A          367 WPLIKATVGLIRNLALC--PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA  444 (644)
T ss_dssp             HHHHHHHHHHHHHHTTS--GGGHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHccC--HHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHh
Confidence            69999999999999984  334478889999999999987643                      356677778888877


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC----------CCCCCCCCccCCC
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPGLTYAGN  465 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~~~~~~~~~  465 (482)
                      ....             .+..+.+.|+++.|.+++.+++++++..|...+.++..+.          ..+.+.++.++++
T Consensus       445 ~~~~-------------~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~L~~ll~~~~  511 (644)
T 2z6h_A          445 RDVH-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRN  511 (644)
T ss_dssp             TSHH-------------HHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred             cCHH-------------HHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhHHHHHHcCCC
Confidence            5431             2567788999999999999999999999999988876541          2245666777778


Q ss_pred             CCCcccCCcccc
Q 043116          466 EGEDALGSNVIA  477 (482)
Q Consensus       466 ~~~~~~~~~~~~  477 (482)
                      +.+|..|+.+|.
T Consensus       512 ~~vr~~A~~aL~  523 (644)
T 2z6h_A          512 EGVATYAAAVLF  523 (644)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            877777766653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=100.00  E-value=5.7e-35  Score=302.64  Aligned_cols=432  Identities=16%  Similarity=0.184  Sum_probs=359.5

Q ss_pred             hhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           25 KFEILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        25 ~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      ..+.++.|++.|++ +++.++..|+.+|.+++..  ......+.+.|+++.|+.+|++++ +.++..|+++|.+++...+
T Consensus       190 ~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~--~~~~~~i~~~g~I~~Lv~lL~~~~-~~v~~~A~~aL~nLa~~~~  266 (780)
T 2z6g_A          190 SPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH--REGLLAIFKSGGIPALVNMLGSPV-DSVLFHAITTLHNLLLHQE  266 (780)
T ss_dssp             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHHHST
T ss_pred             ccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCCCh
Confidence            44789999999984 4899999999999998876  445777888999999999999998 9999999999999999778


Q ss_pred             HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      +.+..+.+.|+++.|++++.+++..++..++.+|.+++..++..+..+.+.|+++.|+.++...........++.+|.+|
T Consensus       267 ~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~L  346 (780)
T 2z6g_A          267 GAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL  346 (780)
T ss_dssp             THHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence            88888889999999999999999999999999999999888888888899999999999996655566677899999999


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI  263 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  263 (482)
                      +............++++.|+.++.+.++.++..++++|.+++......   ....++++.|+.++.++++.++..|+++|
T Consensus       347 s~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL  423 (780)
T 2z6g_A          347 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGIL  423 (780)
T ss_dssp             HTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             hcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            976433333345789999999999999999999999999999665421   11236789999999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHHhcCCCc-hhHHHHHHHHHHHHhcCCHH---HHHHHHHcCChHHHHHHHhcCCh-
Q 043116          264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHN-KSIKKEVCWIISNITAGNRE---QIQAVIDAGLIGPIVNLLQDAEF-  338 (482)
Q Consensus       264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~-~~v~~~a~~~L~nl~~~~~~---~~~~l~~~~~i~~L~~ll~~~~~-  338 (482)
                      ++|+..++.....+.+.|+++.|+.++.+..+ ..++..|+++|+|++..+++   ....+...++++.|++++.+++. 
T Consensus       424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~  503 (780)
T 2z6g_A          424 SNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHW  503 (780)
T ss_dssp             HHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCH
T ss_pred             HHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChH
Confidence            99999888888889999999999999987423 48999999999999874333   23466788999999999998765 


Q ss_pred             hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC----------------------HHHHHHHHHHHHHHHH
Q 043116          339 GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD----------------------PQIVTVCLIGLENILK  396 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~----------------------~~v~~~~l~~L~~l~~  396 (482)
                      .++..++++|+|++.  .+.....+.+.|+++.|++++.+++                      ++++..++.+|.++..
T Consensus       504 ~v~~~A~~aL~nLa~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~  581 (780)
T 2z6g_A          504 PLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILAR  581 (780)
T ss_dssp             HHHHHHHHHHHHHHS--SHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhc--CHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhc
Confidence            999999999999997  4555678889999999999886543                      3466677788888764


Q ss_pred             hchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC----------CCCCCCCCccCCCC
Q 043116          397 VGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPGLTYAGNE  466 (482)
Q Consensus       397 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~~~~~~~~~~  466 (482)
                      ..             ..+..+.+.|+++.|.+++.++++.++..|...+.++..+.          ..+.+..+..++++
T Consensus       582 ~~-------------~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~L~~Ll~~~~~  648 (780)
T 2z6g_A          582 DI-------------HNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNE  648 (780)
T ss_dssp             SH-------------HHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHHHHHGGGCSCH
T ss_pred             Ch-------------hhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHcCCCH
Confidence            21             12567789999999999999999999999999988875431          23456667777777


Q ss_pred             CCcccCCcccc
Q 043116          467 GEDALGSNVIA  477 (482)
Q Consensus       467 ~~~~~~~~~~~  477 (482)
                      .+|..|+.+|.
T Consensus       649 ~Vr~~A~~aL~  659 (780)
T 2z6g_A          649 GVATYAAAVLF  659 (780)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777666553

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=1.5e-30  Score=242.22  Aligned_cols=273  Identities=18%  Similarity=0.168  Sum_probs=237.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCC----------CChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116           41 NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRE----------DYPQLQFEAARALTNIASGTSENTKVAI  110 (482)
Q Consensus        41 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~----------~~~~v~~~a~~~L~~l~~~~~~~~~~~~  110 (482)
                      ...+..|+++|.+++..  .+.++.+++.|+++.|+.+|..+          .+++++..|+++|.|++.++++.+..+.
T Consensus        46 ~~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            34555899999999976  57899999999999999999521          1267999999999999997777887776


Q ss_pred             hC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-
Q 043116          111 DH-GAVPIFVKLLASPSDDVREQAVWALGNVAGD-SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-  187 (482)
Q Consensus       111 ~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-  187 (482)
                      .. |.++.|+.+|+++++++++.|+|+|.|++.. ++..+..+.+.|+++.|+.+|..+.+.++++.++++|++|+... 
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            54 5599999999999999999999999999975 56788999999999999998756677889999999999999844 


Q ss_pred             CCCChhh-hhhHHHHHHHHhccCCh----hHHHHHHHHHHHhcc---CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 043116          188 PQPPFNQ-IRPALRVLAQLIRSNDE----KVLTDACRALAYLAD---GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA  259 (482)
Q Consensus       188 ~~~~~~~-~~~~~~~L~~ll~~~~~----~~~~~~l~~L~~l~~---~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  259 (482)
                      ....... ..|++|.|+.++.++++    +++..++++|.+++.   ..++..+.+.+.|+++.|+.+|.+++..++..|
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A  283 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNA  283 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHH
Confidence            2222223 47999999999987654    589999999999996   577788889999999999999999999999999


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116          260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ  316 (482)
Q Consensus       260 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~  316 (482)
                      +++|+|++..+++....+.+.|+++.|+.+++++ +..+++.|+|+|.|++.+.+..
T Consensus       284 ~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          284 CGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHHH
Confidence            9999999987888888999999999999999999 9999999999999999876554

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.97  E-value=2.3e-29  Score=234.14  Aligned_cols=275  Identities=19%  Similarity=0.204  Sum_probs=236.9

Q ss_pred             CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc----------hhhhhHHHHHHHHHHHhhcCCCCCChh
Q 043116          124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE----------HAKLSMLRTATWTLSNFCRGKPQPPFN  193 (482)
Q Consensus       124 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~----------~~~~~~~~~a~~~L~~L~~~~~~~~~~  193 (482)
                      .++......|+|+|+|++.+ +++|+.+.+.|++++|+.++..          ..++.+++.|+|+|.||+...+.....
T Consensus        43 ~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~  121 (354)
T 3nmw_A           43 APVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKAT  121 (354)
T ss_dssp             CGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34445666899999999976 7899999999999999999942          234678999999999999876423333


Q ss_pred             h--hhhHHHHHHHHhccCChhHHHHHHHHHHHhccC-CcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcC
Q 043116          194 Q--IRPALRVLAQLIRSNDEKVLTDACRALAYLADG-TNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTG  269 (482)
Q Consensus       194 ~--~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~  269 (482)
                      +  ..|++|.|+.+|.+++++++..++++|+|++.. +++....+.+.|+++.|+.+| +++++.++..|+.+|+||+..
T Consensus       122 i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          122 LCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            3  356799999999999999999999999999975 456777888999999999974 667889999999999999986


Q ss_pred             ChhhHHHHH-hcCchHHHHHHhcCCCch---hHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHH
Q 043116          270 DDFQTQCII-NCGALRYLLGLLIHNHNK---SIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKK  342 (482)
Q Consensus       270 ~~~~~~~l~-~~~~i~~L~~ll~~~~~~---~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~  342 (482)
                      +++....+. ..|+++.|+.+|.++.+.   .+++.|+|+|.|++.   ++++.++.+.+.|+++.|+++|.+++..+++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~  281 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS  281 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHH
Confidence            655555565 789999999999887332   599999999999997   6888888999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       343 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      .|+++|.|++.. ++++...+.+.|+++.|+++++++++++++.+.++|.+++...+.
T Consensus       282 ~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~  338 (354)
T 3nmw_A          282 NACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  338 (354)
T ss_dssp             HHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHH
Confidence            999999999864 788899999999999999999999999999999999999976444

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=5.3e-27  Score=211.09  Aligned_cols=240  Identities=31%  Similarity=0.448  Sum_probs=221.6

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      |.++.|+++|++++ ++++..|+++|.+++..+++.+..+.+.|+++.|++++.++++.++..|+++|++++...+..+.
T Consensus         2 ~~i~~L~~~L~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTD-SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999 99999999999999998888999999999999999999999999999999999999988888999


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~  228 (482)
                      .+.+.|+++.++.++ .+.++.++..++++|.+++...+. .......++++.+++++.++++.++..++++|++++...
T Consensus        81 ~~~~~~~i~~l~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHHTTHHHHHHHHT-TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 567899999999999999975432 233334689999999999999999999999999999888


Q ss_pred             cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      +...+.+.+.|+++.|+.++.++++.++..++++|++++..++.....+.+.|+++.|+.+++++ ++.++..|+|+|+|
T Consensus       160 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~  238 (252)
T 4hxt_A          160 DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DSEVQKEAQRALEN  238 (252)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cHHHHHHHHHHHHH
Confidence            88878899999999999999999999999999999999998888888899999999999999998 99999999999999


Q ss_pred             HhcC
Q 043116          309 ITAG  312 (482)
Q Consensus       309 l~~~  312 (482)
                      ++..
T Consensus       239 l~~~  242 (252)
T 4hxt_A          239 IKSG  242 (252)
T ss_dssp             HHHT
T ss_pred             HHcC
Confidence            9974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=8.5e-27  Score=209.75  Aligned_cols=243  Identities=31%  Similarity=0.406  Sum_probs=222.8

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      ++.+|.|++.++++++.++..|+++|.+++... .+....+++.|+++.|++++++++ ++++..|+++|++++.++++.
T Consensus         1 ~~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~~~   78 (252)
T 4hxt_A            1 MNDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTD-SEVQKEAARALANIASGPDEA   78 (252)
T ss_dssp             CCHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHTTSCHHH
T ss_pred             CCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCC-HHHHHHHHHHHHHHHcCChHH
Confidence            367999999999999999999999999999875 457888889999999999999999 999999999999999987999


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                      +..+.+.|+++.|+.++.++++.++..|+++|++++...+..+..+.+.|+++.++.++ .+.++.++..++++|.+++.
T Consensus        79 ~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l-~~~~~~~~~~a~~~L~~l~~  157 (252)
T 4hxt_A           79 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLL-TSTDSEVQKEAARALANIAS  157 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-TCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-cCCCHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999988888889999999999999999 67778999999999999998


Q ss_pred             CCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116          186 GKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       186 ~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  264 (482)
                      ..+.. ......++++.++.++.++++.++..++++|.+++..++...+.+.+.|+++.++.++.++++.++..|+++|+
T Consensus       158 ~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          158 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            75332 33344789999999999999999999999999999888888888999999999999999999999999999999


Q ss_pred             HhhcCCh
Q 043116          265 NIVTGDD  271 (482)
Q Consensus       265 ~l~~~~~  271 (482)
                      +++...+
T Consensus       238 ~l~~~~~  244 (252)
T 4hxt_A          238 NIKSGGW  244 (252)
T ss_dssp             HHHHTCB
T ss_pred             HHHcCCC
Confidence            9997654

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=4.8e-27  Score=211.38  Aligned_cols=239  Identities=35%  Similarity=0.520  Sum_probs=219.2

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      ..++.++.+|.+++ ++++..|+++|.++...+++.+..+.+.|+++.|++++.++++.++..|+++|++++.+.+..+.
T Consensus        12 ~~~~~~~~~L~s~~-~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (252)
T 4db8_A           12 SELPQMTQQLNSDD-MQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (252)
T ss_dssp             CSHHHHHHHHHSSC-SSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             chHHHHHHHHcCCC-HHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            46899999999999 89999999999887665778888999999999999999999999999999999999988888999


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~  228 (482)
                      .+.+.|+++.++.++ .++++.++..++|+|.+++...+.. ......+++|.|+.++.++++.++..++++|++++...
T Consensus        91 ~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           91 AVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHcCCHHHHHHHH-cCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            999999999999999 5678899999999999999886444 34445789999999999999999999999999999888


Q ss_pred             cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      ++....+.+.|+++.|+.++.++++.++..|+++|++++..++.....+.+.|+++.|+.++.++ ++.++..|+|+|+|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~A~~~L~~  248 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEK  248 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSHHHHTHHHHHHT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence            88888889999999999999999999999999999999988888888899999999999999998 99999999999999


Q ss_pred             Hhc
Q 043116          309 ITA  311 (482)
Q Consensus       309 l~~  311 (482)
                      ++.
T Consensus       249 l~~  251 (252)
T 4db8_A          249 LQS  251 (252)
T ss_dssp             TC-
T ss_pred             Hhc
Confidence            874

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=1.4e-26  Score=208.35  Aligned_cols=241  Identities=35%  Similarity=0.502  Sum_probs=217.2

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ....++.+++.|+++++.++..|++.|.++++.. .+....+++.|+++.|+++|++++ ++++..|+++|++++.++++
T Consensus        10 ~~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~-~~v~~~a~~~L~~l~~~~~~   87 (252)
T 4db8_A           10 HGSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNE   87 (252)
T ss_dssp             TTCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSC-HHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCC-HHHHHHHHHHHHHHhcCCHH
Confidence            3446899999999999999999999998877763 667888899999999999999999 99999999999999998999


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      .+..+.+.|+++.|+.++.++++.++..|+++|++++...+.....+.+.|+++.++.++ .+.+..++..++|+|.+++
T Consensus        88 ~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL-~~~~~~v~~~a~~~L~~l~  166 (252)
T 4db8_A           88 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIA  166 (252)
T ss_dssp             HHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGG-GCSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHH-hCCCHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999977765548888999999999999 6678899999999999999


Q ss_pred             cCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116          185 RGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI  263 (482)
Q Consensus       185 ~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  263 (482)
                      ...+.. ......++++.|+.++.++++.++..++++|++++..++.....+.+.|+++.++.++.++++.++..|+++|
T Consensus       167 ~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L  246 (252)
T 4db8_A          167 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL  246 (252)
T ss_dssp             TSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred             cCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence            875322 2223378999999999999999999999999999988888888899999999999999999999999999999


Q ss_pred             hHhhc
Q 043116          264 GNIVT  268 (482)
Q Consensus       264 ~~l~~  268 (482)
                      ++++.
T Consensus       247 ~~l~~  251 (252)
T 4db8_A          247 EKLQS  251 (252)
T ss_dssp             HTTC-
T ss_pred             HHHhc
Confidence            99975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.94  E-value=7.2e-25  Score=198.46  Aligned_cols=235  Identities=17%  Similarity=0.170  Sum_probs=198.6

Q ss_pred             hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH
Q 043116          211 EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK-LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL  289 (482)
Q Consensus       211 ~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l  289 (482)
                      .+-+..++..|.+++...+ ....+.+.|+++.++. +|.++++.++..|+++|++++.+++.....+++.|+++.|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~~~d-na~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCENMD-NAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHH-HHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChh-hHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            3567888999999997544 5666888999999999 9999999999999999999999899888999999999999999


Q ss_pred             hcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh
Q 043116          290 LIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCV  369 (482)
Q Consensus       290 l~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l  369 (482)
                      |+++.+..+++.|+|+|+|++.+++...+.+.+.|+++.|+.++.++++.++..|+|+|.+++.. +++.+..+.+.|++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i  211 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMV  211 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCH
Confidence            99644788999999999999998888888899999999999999999999999999999999985 67788899999999


Q ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHh
Q 043116          370 KPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETY  448 (482)
Q Consensus       370 ~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~  448 (482)
                      +.|+.++.+++++++..++.+|.+++...+.....+. ...+.+...+++     .+..++.++ +.++++++..++++|
T Consensus       212 ~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~-~~~~~l~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~  285 (296)
T 1xqr_A          212 QQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR-EPELGLEELLRH-----RCQLLQQHEEYQEELEFCEKLLQTC  285 (296)
T ss_dssp             HHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHH-CGGGCHHHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHh-ccHHHHHHHHHH-----HHHHccchHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999987443221100 011235555543     366677565 799999999999999


Q ss_pred             cCCCC
Q 043116          449 WCGRV  453 (482)
Q Consensus       449 ~~~~~  453 (482)
                      |.+++
T Consensus       286 f~~~~  290 (296)
T 1xqr_A          286 FSSPA  290 (296)
T ss_dssp             CC---
T ss_pred             cCCCC
Confidence            97643

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.1e-24  Score=213.72  Aligned_cols=321  Identities=12%  Similarity=0.103  Sum_probs=258.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhCCChH-
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMR-EDYPQLQFEAARALTNIASGTSE-  104 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~~~-  104 (482)
                      ..+.+.+.+.+++...+..|++.|..++..  .+..+.+. +.|+++.|+.++++ .+ ..+...++.+|.|++...+. 
T Consensus       335 La~~~~~~L~~~~~~~~~~AvEgLaYLSl~--~~VKe~L~~d~~~L~~Lv~llk~~~d-~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          335 LSEIFINAISRRIVPKVEMSVEALAYLSLK--ASVKIMIRSNESFTEILLTMIKSQKM-THCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHTTS--SHHHHHHHHCHHHHHHHHHHHTTTCC-TTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHHHHhcCCccHHHHHHHHHHHHhCC--HHHHHHHHhCHHHHHHHHHHHhCCCC-chHHHHHHHHHHHhcCCCccc
Confidence            567788888877766689999999999876  34445555 56779999999996 55 78999999999999974331 


Q ss_pred             -------------------------------------hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 043116          105 -------------------------------------NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC  147 (482)
Q Consensus       105 -------------------------------------~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  147 (482)
                                                           .+..+.+.|+++.|+.++.++++.+++.|+|+|.+++.+ +..
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d-~~~  490 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNF  490 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTS-GGG
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHH
Confidence                                                 456778999999999999999999999999999999955 778


Q ss_pred             HHHHHHhCChHHHHHHHcchhhh--hHHHHHHHHHHHhhcCCC-CCCh--hhhhhHHHHHHHHhcc-CCh----------
Q 043116          148 RDFVLSQGALIPLLAELNEHAKL--SMLRTATWTLSNFCRGKP-QPPF--NQIRPALRVLAQLIRS-NDE----------  211 (482)
Q Consensus       148 ~~~~~~~~~i~~l~~~l~~~~~~--~~~~~a~~~L~~L~~~~~-~~~~--~~~~~~~~~L~~ll~~-~~~----------  211 (482)
                      |..+++.|+++.|+.++....+.  ..+..|+++|.+++.... ...+  ....+++|.|+.+|.. +..          
T Consensus       491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~  570 (778)
T 3opb_A          491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ  570 (778)
T ss_dssp             HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence            99999999999999999655443  278899999999996542 1111  0113899999999982 221          


Q ss_pred             ---hHHHHHHHHHHHhccCCc----HHHHHHHHh-CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc---
Q 043116          212 ---KVLTDACRALAYLADGTN----DKIQAVIEA-GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC---  280 (482)
Q Consensus       212 ---~~~~~~l~~L~~l~~~~~----~~~~~~~~~-~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~---  280 (482)
                         --+..++.+|.|++..++    +....++.. |+++.+..+|.++++.++..|+++++||+.+.....+.+.+.   
T Consensus       571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~  650 (778)
T 3opb_A          571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENP  650 (778)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSH
T ss_pred             ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCc
Confidence               127789999999998763    334557774 899999999999999999999999999998444322234322   


Q ss_pred             ---CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHhc--CChhHHHHHHHHHHHhhc
Q 043116          281 ---GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA-GLIGPIVNLLQD--AEFGTKKEAAWVISNATS  353 (482)
Q Consensus       281 ---~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~  353 (482)
                         +.++.|+.++..+ +.++|..|+|+|+|++..++...+.+++. ++++.++.++.+  ++++++..++.++.|++.
T Consensus       651 ~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          651 QSLRNFNILVKLLQLS-DVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             hhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence               2478899999888 99999999999999987778878888875 799999999998  899999999999999996

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.6e-23  Score=204.26  Aligned_cols=408  Identities=14%  Similarity=0.124  Sum_probs=301.6

Q ss_pred             hhchhhhhhhccHHHHHHHhcCC-CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHH
Q 043116           17 ALSLNLQSKFEILPTMVAGVWSD-DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARAL   95 (482)
Q Consensus        17 ~~~~~~~~~~~~i~~l~~~l~s~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L   95 (482)
                      +....+-...+..+.+.+.+.+. +..+...+++.|... +.+  +..+..+..+.++.|.+.+++   .+++..|+-+|
T Consensus       245 ~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaA-Ci~--~~cR~~I~~~~~~~L~~~l~~---~~ir~lAavvL  318 (778)
T 3opb_A          245 TLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSA-CID--ETMRTYITENYLQLLERSLNV---EDVQIYSALVL  318 (778)
T ss_dssp             HHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHH-CCS--HHHHHHHHHHHHHHHHHHTTS---GGGHHHHHHHH
T ss_pred             HHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHH-hCC--cHHHHHHHHhHHHHHHHHhcc---HHHHHHHHHHH
Confidence            33344444555677777777544 445555555555544 443  334566677888999999965   47899999999


Q ss_pred             HHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH-hCChHHHHHHHcchhhhhHHH
Q 043116           96 TNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS-QGALIPLLAELNEHAKLSMLR  174 (482)
Q Consensus        96 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~~~~~~~~  174 (482)
                      +.+..........+.  ...+.+.+.+..++..-+..|++.|..++.+. ..++.+.+ .+++..|+.++....+..+..
T Consensus       319 ~KL~~~~~~~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~-~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Y  395 (778)
T 3opb_A          319 VKTWSFTKLTCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLKA-SVKIMIRSNESFTEILLTMIKSQKMTHCLY  395 (778)
T ss_dssp             HHHTGGGTCTTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS-HHHHHHHHCHHHHHHHHHHHTTTCCTTHHH
T ss_pred             HHHhcCCCCCcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH-HHHHHHHhCHHHHHHHHHHHhCCCCchHHH
Confidence            998763321111111  24577788888777666999999999999654 45555544 466999999996557788899


Q ss_pred             HHHHHHHHhhcCCCCCCh---------------------------------------hhhhhHHHHHHHHhccCChhHHH
Q 043116          175 TATWTLSNFCRGKPQPPF---------------------------------------NQIRPALRVLAQLIRSNDEKVLT  215 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~~~---------------------------------------~~~~~~~~~L~~ll~~~~~~~~~  215 (482)
                      .++.+|.|++...+....                                       ....|++|.|+.++.++++.++.
T Consensus       396 gal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re  475 (778)
T 3opb_A          396 GLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQ  475 (778)
T ss_dssp             HHHHHHHHTTCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHH
T ss_pred             HHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHH
Confidence            999999999996542100                                       01268999999999999999999


Q ss_pred             HHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChh---hHHHHHHHHhHhhcCChhhHHHHHh----cCchHHHHH
Q 043116          216 DACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRL---VLTAALRTIGNIVTGDDFQTQCIIN----CGALRYLLG  288 (482)
Q Consensus       216 ~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~---v~~~a~~~L~~l~~~~~~~~~~l~~----~~~i~~L~~  288 (482)
                      .++++|.+++.. ++....+++.|+++.|+.++.+....   .+..|+++|.++....+...  ++.    .|++++|+.
T Consensus       476 ~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~  552 (778)
T 3opb_A          476 QVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFE  552 (778)
T ss_dssp             HHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHH
T ss_pred             HHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHH
Confidence            999999999965 56777899999999999999887544   89999999999995443221  121    389999999


Q ss_pred             HhcC-CCch------------hHHHHHHHHHHHHhcCC----HHHHHHHHHc-CChHHHHHHHhcCChhHHHHHHHHHHH
Q 043116          289 LLIH-NHNK------------SIKKEVCWIISNITAGN----REQIQAVIDA-GLIGPIVNLLQDAEFGTKKEAAWVISN  350 (482)
Q Consensus       289 ll~~-~~~~------------~v~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~L~~ll~~~~~~~~~~a~~aL~~  350 (482)
                      +|.. +...            --+.+|+.+|.|++..+    .+..+.++.. |+++.|.+++.+++..+++.|+++++|
T Consensus       553 LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~N  632 (778)
T 3opb_A          553 LLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISN  632 (778)
T ss_dssp             TSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHH
T ss_pred             HcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            9983 2111            12779999999999864    2446778884 999999999999999999999999999


Q ss_pred             hhcCCCHHHH-HHHHHc------CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHH-HHHhch
Q 043116          351 ATSGGTHEQI-KHLVRE------GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQL-VEEAEG  422 (482)
Q Consensus       351 l~~~~~~~~~-~~l~~~------~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~-l~~~~~  422 (482)
                      ++.  +++.+ ..+.+.      +.++.|+.+++.++.+++..|.++|.++....+.            .+.. +...++
T Consensus       633 L~~--~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~------------ia~~ll~~~~g  698 (778)
T 3opb_A          633 MMS--HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPL------------IAKELLTKKEL  698 (778)
T ss_dssp             HHT--SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHH------------HHHHHTTCHHH
T ss_pred             HhC--CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChH------------HHHHHHHcccc
Confidence            997  34432 222221      2378899999999999999999999999643332            2344 444489


Q ss_pred             HHHHHHhhcC--CCHHHHHHHHHHHHHhcC
Q 043116          423 LEKIENLQSH--DNNDIHEMSVKILETYWC  450 (482)
Q Consensus       423 ~~~l~~l~~~--~~~~v~~~a~~~l~~~~~  450 (482)
                      ++.+.++..+  ++++++.++..++.+++.
T Consensus       699 i~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~  728 (778)
T 3opb_A          699 IENAIQVFADQIDDIELRQRLLMLFFGLFE  728 (778)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            9999999877  899999999999999996

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=4.1e-23  Score=180.09  Aligned_cols=198  Identities=37%  Similarity=0.540  Sum_probs=185.7

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      .+..+.+..++++++++++..++++|.+++..+++....+.+.|+++.++.+|.++++.++..|+++|++++.+++....
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            57788999999999999999999999999988888888899999999999999999999999999999999988888888


Q ss_pred             HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      .+.+.|+++.|+.+++++ ++.++..|+|+|+|++.++++..+.+++.|+++.|++++.++++.++..|+++|.+++.. 
T Consensus        91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~-  168 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG-  168 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS-
T ss_pred             HHHHCCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-
Confidence            899999999999999999 999999999999999998888888899999999999999999999999999999999985 


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +++....+.+.|+++.|.+++.+++++++..+.++|.++.
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            5778888899999999999999999999999999999885

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=9.5e-23  Score=177.79  Aligned_cols=199  Identities=33%  Similarity=0.489  Sum_probs=181.0

Q ss_pred             hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 043116           68 QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC  147 (482)
Q Consensus        68 ~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  147 (482)
                      ..+..+.|..++++++ ++++..|+++|.+++.++++.+..+.+.|+++.|+++|.++++.++..|+++|++++.+.+..
T Consensus        10 ~~~~~~~l~~LL~s~~-~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A           10 HGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ---CHHHHHHHTTCSC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             ccchhHHHHHHhcCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            4678999999999999 999999999999999889999999999999999999999999999999999999999888888


Q ss_pred             HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116          148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD  226 (482)
Q Consensus       148 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~  226 (482)
                      +..+.+.|+++.++.++ .+.++.++..++|+|.+++...+.. ......++++.|+.++.++++.++..++++|.+++.
T Consensus        89 ~~~i~~~g~i~~L~~lL-~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  167 (210)
T 4db6_A           89 IQAVIDAGALPALVQLL-SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIAS  167 (210)
T ss_dssp             HHHHHHTTCHHHHHHHT-TCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHH-cCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            89999999999999999 6678999999999999999865332 223347899999999999999999999999999999


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       227 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      .+++....+.+.|+++.|+.++.++++.++..|+++|.+++.
T Consensus       168 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          168 GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            878888889999999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=1.9e-21  Score=176.05  Aligned_cols=225  Identities=17%  Similarity=0.144  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHH
Q 043116           85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAE  163 (482)
Q Consensus        85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  163 (482)
                      .+-+..|+..|.+++. +.++...+.+.|+++.|+. +|.++++.++..|+|+|++++.+++.+++.+++.|++++|+.+
T Consensus        54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L  132 (296)
T 1xqr_A           54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  132 (296)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence            4678899999999998 6778888999999999999 9999999999999999999999999999999999999999999


Q ss_pred             HcchhhhhHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116          164 LNEHAKLSMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP  242 (482)
Q Consensus       164 l~~~~~~~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~  242 (482)
                      +..+++..+++.|+|+|++++++.+.. ......+++|.|+.+++++++.++..++++|++++..+++..+.+++.|+++
T Consensus       133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~  212 (296)
T 1xqr_A          133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  212 (296)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHH
Confidence            955557889999999999999876432 2333468999999999999999999999999999988888889999999999


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--C---chHHHHHHhcCCC-chhHHHHHHHHHHHHh
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--G---ALRYLLGLLIHNH-NKSIKKEVCWIISNIT  310 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~---~i~~L~~ll~~~~-~~~v~~~a~~~L~nl~  310 (482)
                      .|+.+|.++++.++..++++|++++...+.........  .   .++.-++-+++.+ ..++...+..++-++.
T Consensus       213 ~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          213 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHc
Confidence            99999999999999999999999998755443322211  1   1222234444332 3455566666666654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.86  E-value=6.2e-21  Score=164.92  Aligned_cols=197  Identities=18%  Similarity=0.131  Sum_probs=170.8

Q ss_pred             CHHHHHHhhcCCCCh--HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116           71 VVPRFVEFLMREDYP--QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR  148 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~--~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  148 (482)
                      .+|.++++|++++ +  +++..|++++.+++..+++.+..+.+.|++|.|+++|.++++++++.|+|+|.||+.+++..+
T Consensus         9 ~i~~lV~lL~s~~-~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            9 TLERAVSMLEADH-MLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CHHHHHHTCCSSC-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHhCCCC-chHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            5899999999988 6  899999999999998889999999999999999999999999999999999999998888899


Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----------------cCChh
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----------------SNDEK  212 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~  212 (482)
                      ..+.+.|+++.|+.+|..+.+.++++.++.+|++|+..... ...+..+.+|.|+.++.                ..+++
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~-k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKL-KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGG-HHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhh-HHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence            99999999999999995556889999999999999987533 33344677888887652                13678


Q ss_pred             HHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHhhCC------CChhhHHHHHHHHhHhhcC
Q 043116          213 VLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKLLGH------RSRLVLTAALRTIGNIVTG  269 (482)
Q Consensus       213 ~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~v~~~a~~~L~~l~~~  269 (482)
                      ++..+..+|+|++..+++..+.+.+. |+++.|+.+++.      .+...++.|+.+|.||+..
T Consensus       167 v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          167 IFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            99999999999998877777778776 778999999864      2567899999999999864

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.85  E-value=1.2e-20  Score=163.14  Aligned_cols=196  Identities=16%  Similarity=0.193  Sum_probs=165.7

Q ss_pred             cHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           28 ILPTMVAGVWSDDN--KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        28 ~i~~l~~~l~s~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .+|.++++|+++++  .++..|++.|.+++..+ .+....+++.|++|.|+++|++++ +++++.|+++|.|++.+++++
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~-~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQN-EDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTCHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHHhCCHHH
Confidence            68999999999887  89999999999999765 566788889999999999999988 999999999999999988999


Q ss_pred             HHHHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc---------------hhh
Q 043116          106 TKVAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE---------------HAK  169 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~---------------~~~  169 (482)
                      +..+.+.|+++.|+++|. +++.++++.|+.+|+|++.. +..+..+.+. ++++|+.++..               ..+
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~-~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~  164 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN-DKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLD  164 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-GGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCC
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC-hhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccch
Confidence            999999999999999998 57999999999999999965 4456666664 68888876521               125


Q ss_pred             hhHHHHHHHHHHHhhcCCCCCChhh--hhhHHHHHHHHhcc------CChhHHHHHHHHHHHhccC
Q 043116          170 LSMLRTATWTLSNFCRGKPQPPFNQ--IRPALRVLAQLIRS------NDEKVLTDACRALAYLADG  227 (482)
Q Consensus       170 ~~~~~~a~~~L~~L~~~~~~~~~~~--~~~~~~~L~~ll~~------~~~~~~~~~l~~L~~l~~~  227 (482)
                      .+++.+++++|.||+..++.....+  ..|+++.|+.+++.      .+...++.+..+|.||+..
T Consensus       165 ~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          165 FDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            6899999999999998653323322  35889999999884      2568899999999999854

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.80  E-value=1.2e-17  Score=169.13  Aligned_cols=382  Identities=11%  Similarity=0.080  Sum_probs=283.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .+|.+.+.++.+++.++..|+..|..++...+.    ......++|.+..++++++ +.+|..|+.+|+.++...+..  
T Consensus       165 l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~--  237 (588)
T 1b3u_A          165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL----DNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH----HHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcH----HhHHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHHHHhCCHH--
Confidence            466677777888899999999999999876421    1234567888999998888 899999999999887633221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                       .....+++.+..++.+++..+|..++.+|+.++.....  + .....+++.++.++ .++++.++..+++++..++...
T Consensus       238 -~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--E-ITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--H-HHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--c-cchhHHHHHHHHHh-CCCcHHHHHHHHHHHHHHHHHh
Confidence             12234778888899999999999999999999742111  1 12334678888888 6778889999999999999865


Q ss_pred             CCCCh--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          188 PQPPF--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       188 ~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                      +....  .....++|.+..++.++++.++..++++|..++..-...   .....+++.+..+++++++.+|..++.+++.
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~  389 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKD---NTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHH---HHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHh---HHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            33211  345678899999999999999999999999988432211   1223577888999999999999999999988


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      +.......   .....+++.+..++.+. +..+|..++.++..++.. .++    .....+++.++..+.+.+..+|..|
T Consensus       390 l~~~~~~~---~~~~~~lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~~Vr~~a  461 (588)
T 1b3u_A          390 VNEVIGIR---QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVE----FFDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCHH---HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGG----GCCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHhcCHH---HHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHcCHH----HHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            87633221   11235778888888887 899999999999998751 111    1112367888888888999999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      +.+++.++....++.    ....+++.|..++.++++.++..++.++..+.......          .+     ....++
T Consensus       462 ~~~l~~l~~~~~~~~----~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~----------~~-----~~~~~~  522 (588)
T 1b3u_A          462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD----------IT-----TKHMLP  522 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH----------HH-----HHHTHH
T ss_pred             HHHHHHHHHHhCchh----HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHH----------HH-----HHHHHH
Confidence            999999976433322    12357888988899999999999999999988643221          01     234567


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      .|..+..+++++|+..+.+.+..++..
T Consensus       523 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          523 TVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHhhCCCCCchHHHHHHHHHHHHHHH
Confidence            777888888889988888888887753

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.80  E-value=7.6e-18  Score=170.53  Aligned_cols=382  Identities=13%  Similarity=0.147  Sum_probs=284.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      ..+|.+..+++.+++.++..|+.+|..++...+.    ......++|.+..++++++ ..+|..++.+|+.++.....  
T Consensus       203 ~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~~~~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~--  275 (588)
T 1b3u_A          203 EIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKAVGP--  275 (588)
T ss_dssp             THHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHHHCH--
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHHccCCC-HHHHHHHHHHHHHHHHHhCc--
Confidence            3578888888888999999999999998876421    1233458899999998888 89999999999999762111  


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                       ......+++.+..++.++++.+|..|.++|+.++...+ ..+.......+++.+..++ ++.+..++..++++|..++.
T Consensus       276 -~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l-~d~~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          276 -EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSP  353 (588)
T ss_dssp             -HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHH
T ss_pred             -ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHH
Confidence             12233578999999999999999999999999984332 2111122234567777777 67788999999999998875


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                      .-..  ......++|.+..++++++++++..++.++..+.......   .....+++.+..++.++++.++..++.+++.
T Consensus       354 ~~~~--~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~  428 (588)
T 1b3u_A          354 ILGK--DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLSQSLLPAIVELAEDAKWRVRLAIIEYMPL  428 (588)
T ss_dssp             HHCH--HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HhhH--hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence            4211  1123567888999999999999999999999887543211   1223567888889999999999999999999


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      ++......   .....+++.+...+.++ +..+|..|+.+++.++.. .++    .....++|.+..++.+++..+|..+
T Consensus       429 l~~~~~~~---~~~~~l~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~----~~~~~llp~l~~~~~~~~~~~R~~a  500 (588)
T 1b3u_A          429 LAGQLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTT  500 (588)
T ss_dssp             HHHHHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHH
T ss_pred             HHHHcCHH---HHHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHHhCch----hHHHHHHHHHHHHhhCCCHHHHHHH
Confidence            87532111   11224678888999888 899999999999999862 222    1223588888888888899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      +++++.++.....+    .....+++.|..++++++++++..++++|..+.......           +    .....++
T Consensus       501 ~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-----------~----~~~~~~p  561 (588)
T 1b3u_A          501 LFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS-----------T----LQSEVKP  561 (588)
T ss_dssp             HHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH-----------H----HHHHHHH
T ss_pred             HHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchh-----------h----hHHHHHH
Confidence            99999998632221    123458999999999999999999999999998643211           1    1234467


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      .|..+..+++++|+..|...+..+-
T Consensus       562 ~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          562 ILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCchhHHHHHHHHHHHhh
Confidence            7888889999999999999988653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.80  E-value=5.6e-16  Score=149.82  Aligned_cols=417  Identities=13%  Similarity=0.159  Sum_probs=298.8

Q ss_pred             hccHHHHHHHhcC--CCHHHHHHHHHHHHHHhcCCCCC----------------cHHHHH-hcCCHHHHHHhhcCCCChH
Q 043116           26 FEILPTMVAGVWS--DDNKVQLEATTLFRKMLSFDRNS----------------PIEKVI-QSGVVPRFVEFLMREDYPQ   86 (482)
Q Consensus        26 ~~~i~~l~~~l~s--~~~~~~~~a~~~L~~l~~~~~~~----------------~~~~~~-~~g~~~~L~~ll~~~~~~~   86 (482)
                      .++++.|+..|+.  +|.++...++..|.++.+....+                ..+.++ +.+.++.|+.+|++.+ ..
T Consensus        59 ~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~d-f~  137 (651)
T 3grl_A           59 IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFD-FH  137 (651)
T ss_dssp             HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCC-HH
T ss_pred             hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCcc-HH
Confidence            3479999999984  57888888999999887754221                122333 5678999999999998 89


Q ss_pred             HHHHHHHHHHHHhCCChH-hHHHHHhC-CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH
Q 043116           87 LQFEAARALTNIASGTSE-NTKVAIDH-GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL  164 (482)
Q Consensus        87 v~~~a~~~L~~l~~~~~~-~~~~~~~~-g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l  164 (482)
                      +|..++.+|..++...++ .++.++.. ++++.|+.+|.+..+.+|..++..|.+++.+++..++.+.-.|+++.|+.++
T Consensus       138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii  217 (651)
T 3grl_A          138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII  217 (651)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence            999999999999987777 67777754 9999999999999999999999999999999999999999999999999999


Q ss_pred             cchh---hhhHHHHHHHHHHHhhcCCC-CCChhhhhhHHHHHHHHhccCCh------hHHHH---HHHHHHHhccCC---
Q 043116          165 NEHA---KLSMLRTATWTLSNFCRGKP-QPPFNQIRPALRVLAQLIRSNDE------KVLTD---ACRALAYLADGT---  228 (482)
Q Consensus       165 ~~~~---~~~~~~~a~~~L~~L~~~~~-~~~~~~~~~~~~~L~~ll~~~~~------~~~~~---~l~~L~~l~~~~---  228 (482)
                      ....   ...+...|+.++.+|.+.++ +.......+++|.|..++..+++      .....   ++.++.-+...+   
T Consensus       218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~  297 (651)
T 3grl_A          218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP  297 (651)
T ss_dssp             HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred             HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            5432   23678889999999999974 33333446889999999875432      13333   555666666442   


Q ss_pred             ---cHHHHHHHHhCcHHHHHHhhCCC--ChhhHHHHHHHHhHhhcCChhhHHHHHhcC---------chHHHHHHhcCCC
Q 043116          229 ---NDKIQAVIEAGVCPRLVKLLGHR--SRLVLTAALRTIGNIVTGDDFQTQCIINCG---------ALRYLLGLLIHNH  294 (482)
Q Consensus       229 ---~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---------~i~~L~~ll~~~~  294 (482)
                         ......+.+.|++..++.++..+  ...++..|+.+++.+.++++.....+.+..         ++..++.++.+..
T Consensus       298 ~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~  377 (651)
T 3grl_A          298 GATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQ  377 (651)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTS
T ss_pred             CCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccc
Confidence               23466788999999999998765  567999999999999999988877776543         4444556676665


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHHc----C------Ch---HHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116          295 NKSIKKEVCWIISNITAGNREQIQAVIDA----G------LI---GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIK  361 (482)
Q Consensus       295 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----~------~i---~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~  361 (482)
                      ...+|.+|++++..+..++++....+...    .      .+   ..+..-+.+.|+--.-.|+.++.++... +++...
T Consensus       378 ~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~-n~~~K~  456 (651)
T 3grl_A          378 PFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQE-NATQKE  456 (651)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcC-CHHHHH
Confidence            78899999999999998877654444432    1      11   1234445556665556678888888874 555444


Q ss_pred             HHHH--------c---CChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh
Q 043116          362 HLVR--------E---GCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL  429 (482)
Q Consensus       362 ~l~~--------~---~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l  429 (482)
                      .+..        +   -.+..+...+. ..++++...-+..|...+..++.           .....+.+...++.|.+.
T Consensus       457 ~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~-----------AV~dFL~~~s~l~~L~~~  525 (651)
T 3grl_A          457 QLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPI-----------AVTHFLHNSANVPFLTGQ  525 (651)
T ss_dssp             HHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHH-----------HHHHHHHSTTHHHHHHHH
T ss_pred             HHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChH-----------HHHHHHcCCchHHHHHHH
Confidence            3333        0   12444555554 34566666666666666654433           345566555567777766


Q ss_pred             hcC--C--CHHHHHHHHHHHHHhcCCCCCC
Q 043116          430 QSH--D--NNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       430 ~~~--~--~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      ..+  .  +.-|+-.+.-++--++.....+
T Consensus       526 i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          526 IAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            533  2  2446788888887766655444

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.79  E-value=3.5e-18  Score=180.36  Aligned_cols=355  Identities=14%  Similarity=0.150  Sum_probs=258.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .-+.+++.+.++++.++..++.++..++......     .-.++++.+++.+.+++ +.+++.++.+|+.++...+....
T Consensus        91 ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~-----~wp~ll~~L~~~l~~~~-~~~r~~al~~L~~i~~~~~~~~~  164 (852)
T 4fdd_A           91 IKSECLNNIGDSSPLIRATVGILITTIASKGELQ-----NWPDLLPKLCSLLDSED-YNTCEGAFGALQKICEDSAEILD  164 (852)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT-----TCTTHHHHHHHHHSCSS-HHHHHHHHHHHHHHHHHHTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc-----ccHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHhHHHhc
Confidence            3466777788888999999999999998864211     12457999999999988 89999999999999874333211


Q ss_pred             HHH----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          108 VAI----DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       108 ~~~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      .-.    -..+++.+++++.++++.+|..|++++.++....+....... .++++.++..+ .+++..++..++++|..+
T Consensus       165 ~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~-~d~~~~vr~~a~~~L~~l  242 (852)
T 4fdd_A          165 SDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALA-GDEEPEVRKNVCRALVML  242 (852)
T ss_dssp             HCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHH-TCCCHHHHHHHHHHHHHH
T ss_pred             hhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHc-CCCCHHHHHHHHHHHHHH
Confidence            100    013567777888889999999999999998855432110000 12566677766 567889999999999999


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHh---CcHHHHHHhh-----------C
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA---GVCPRLVKLL-----------G  249 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~---~~l~~L~~ll-----------~  249 (482)
                      +...+.........+++.+...+.+.+++++..++..+..+++.... .. ....   .+++.++..+           .
T Consensus       243 ~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~-~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~  320 (852)
T 4fdd_A          243 LEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPIC-KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKG  320 (852)
T ss_dssp             HHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTH-HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhH-HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence            98754333334567899999999999999999999999999865421 11 1211   4566666666           2


Q ss_pred             C-----------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHH
Q 043116          250 H-----------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ  318 (482)
Q Consensus       250 ~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~  318 (482)
                      +           .+..++..+..+|+.++...+..   ++ ..+++.+...+.++ ++.+|..|++++++++.+..+...
T Consensus       321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~  395 (852)
T 4fdd_A          321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMI  395 (852)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHG
T ss_pred             CcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHH
Confidence            3           23457889999999998644322   11 24678888888888 999999999999999987766544


Q ss_pred             HHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHH-HHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHE-QIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       319 ~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ..+ .++++.++..+.++++.+|..+++++++++...... ...+  -.++++.|...+.++++.++..++++|.++++.
T Consensus       396 ~~l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          396 PYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence            433 357899999999999999999999999998631110 0011  124678888888889999999999999999976


Q ss_pred             chh
Q 043116          398 GEA  400 (482)
Q Consensus       398 ~~~  400 (482)
                      ...
T Consensus       473 ~~~  475 (852)
T 4fdd_A          473 ACT  475 (852)
T ss_dssp             HGG
T ss_pred             hhH
Confidence            544

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.77  E-value=3.7e-17  Score=172.49  Aligned_cols=396  Identities=13%  Similarity=0.119  Sum_probs=277.0

Q ss_pred             ccHHHHHHHh---cCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh
Q 043116           27 EILPTMVAGV---WSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        27 ~~i~~l~~~l---~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~  103 (482)
                      +..+.+...+   .+.++.+|..|+..|.+..... ......-....+-+.+++.+.+++ +.+|..++.+++.++....
T Consensus        45 ~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~-w~~~~~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~  122 (852)
T 4fdd_A           45 DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAH-FQNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGE  122 (852)
T ss_dssp             HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTS-GGGCCHHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHc-cCCCCHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcC
Confidence            3344555555   4667899999999999988652 221112223345566777788888 8999999999999987431


Q ss_pred             HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH----HhCChHHHHHHHcchhhhhHHHHHHHH
Q 043116          104 ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL----SQGALIPLLAELNEHAKLSMLRTATWT  179 (482)
Q Consensus       104 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~~~~i~~l~~~l~~~~~~~~~~~a~~~  179 (482)
                      ..    ...+.++.|+..+.++++.+++.++.+|+.++...+.....-.    -..+++.++..+ .+++..++..++++
T Consensus       123 ~~----~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l-~~~~~~vR~~A~~a  197 (852)
T 4fdd_A          123 LQ----NWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFF-KHSSPKIRSHAVAC  197 (852)
T ss_dssp             TT----TCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTT-TCSSHHHHHHHHHH
T ss_pred             cc----ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHh-cCCCHHHHHHHHHH
Confidence            11    1236789999999999999999999999999854332211000    012355556655 56778899999999


Q ss_pred             HHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHH
Q 043116          180 LSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA  259 (482)
Q Consensus       180 L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a  259 (482)
                      +..+....+.........+++.+..++.+++++++..++++|..++...++.....++ ++++.+...+.+.++.++..|
T Consensus       198 L~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a  276 (852)
T 4fdd_A          198 VNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEA  276 (852)
T ss_dssp             HHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHH
T ss_pred             HHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHH
Confidence            9988765432222234578899999999999999999999999999766544332222 477888888899999999999


Q ss_pred             HHHHhHhhcCChhhHHHHHhc---CchHHHHHHhc-----------C--C--------CchhHHHHHHHHHHHHhcCCHH
Q 043116          260 LRTIGNIVTGDDFQTQCIINC---GALRYLLGLLI-----------H--N--------HNKSIKKEVCWIISNITAGNRE  315 (482)
Q Consensus       260 ~~~L~~l~~~~~~~~~~l~~~---~~i~~L~~ll~-----------~--~--------~~~~v~~~a~~~L~nl~~~~~~  315 (482)
                      +.++..++.... ... ....   .+++.++..+.           +  .        .+..+|+.|+.++..++...++
T Consensus       277 ~e~l~~l~~~~~-~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~  354 (852)
T 4fdd_A          277 CEFWLTLAEQPI-CKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD  354 (852)
T ss_dssp             HHHHHHHTTSTT-HHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHhcchh-HHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH
Confidence            999999986432 111 2211   45666666662           2  0        1345789999999999863222


Q ss_pred             HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          316 QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       316 ~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                         .++. .+++.+.+.+.++++.+|..|++++++++.... +.... .-.++++.+...++++++.|+..+.+++.++.
T Consensus       355 ---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~-~~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~  428 (852)
T 4fdd_A          355 ---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCM-QGMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYA  428 (852)
T ss_dssp             ---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTH-HHHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTH
T ss_pred             ---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcch-HHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence               1222 367777788888899999999999999998643 33222 12357899999999999999999999999998


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      ........       ..+..     +.++.|.+.+.++++.++..|.+.+..+..
T Consensus       429 ~~~~~~~~-------~~~~~-----~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          429 HWVVSQPP-------DTYLK-----PLMTELLKRILDSNKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHHHHSCT-------TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhccchH-------HHHHH-----HHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence            75433211       11122     335667777778899999999999887764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.74  E-value=3.4e-16  Score=157.59  Aligned_cols=341  Identities=15%  Similarity=0.162  Sum_probs=249.2

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .++.++++++++++.++..+...+..++... ++   ..  .-+++.+.+-+++++ +.+|..|+++|+++.  .++...
T Consensus        50 ~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~e---~~--~l~~n~l~kdL~~~n-~~ir~~AL~~L~~i~--~~~~~~  120 (591)
T 2vgl_B           50 LFPDVVNCMQTDNLELKKLVYLYLMNYAKSQ-PD---MA--IMAVNSFVKDCEDPN-PLIRALAVRTMGCIR--VDKITE  120 (591)
T ss_dssp             GHHHHHHTTSSSCHHHHHHHHHHHHHHHHHS-HH---HH--HTTHHHHGGGSSSSS-HHHHHHHHHHHHTCC--SGGGHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-ch---HH--HHHHHHHHHHcCCCC-HHHHHHHHHHHHcCC--hHHHHH
Confidence            5777888888899999988888888887643 11   11  224678888899988 999999999999985  455444


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      .     +++.+.+++.++++.+|..|++++.+++...+..   +.+.+.++.+..++ .+.++.++..|+++|..++...
T Consensus       121 ~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          121 Y-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQM---VEDQGFLDSLRDLI-ADSNPMVVANAVAALSEISESH  191 (591)
T ss_dssp             H-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCC---HHHHHHHHHHHHTT-SCSCHHHHHHHHHHHHHHTTSC
T ss_pred             H-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhh---cccccHHHHHHHHh-CCCChhHHHHHHHHHHHHHhhC
Confidence            3     3578899999999999999999999998655542   22345677888888 6788999999999999999886


Q ss_pred             CCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116          188 PQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI  266 (482)
Q Consensus       188 ~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  266 (482)
                      +.. ........++.++..+...++..+..+++++..++..++...     ..+++.+..++++.++.|+..|++++..+
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~-----~~~l~~l~~~l~~~~~~V~~ea~~~i~~l  266 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREA-----QSICERVTPRLSHANSAVVLSAVKVLMKF  266 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHH-----HHHHHHHTTCSCSSTTHHHHHHHHHHHHS
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHH-----HHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            543 333446778888888888889899999999998885544332     24677888889999999999999999998


Q ss_pred             hcC---ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH-----------------HH-H----HHH
Q 043116          267 VTG---DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE-----------------QI-Q----AVI  321 (482)
Q Consensus       267 ~~~---~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~-----------------~~-~----~l~  321 (482)
                      ...   +++..+.+. ..+.+.|+.++. + ++.+|..|+.+|..++...++                 .+ .    .+.
T Consensus       267 ~~~~~~~~~~~~~~~-~~~~~~L~~L~~-~-d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~  343 (591)
T 2vgl_B          267 LELLPKDSDYYNMLL-KKLAPPLVTLLS-G-EPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMI  343 (591)
T ss_dssp             CCSCCBTTBSHHHHH-HHTHHHHHHHTT-S-CHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHH
T ss_pred             hhccCCCHHHHHHHH-HHHHHHHHHHhc-C-CccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHH
Confidence            742   333333222 245566665553 5 777888888888877641111                 11 1    111


Q ss_pred             ---Hc----CChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116          322 ---DA----GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI  394 (482)
Q Consensus       322 ---~~----~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l  394 (482)
                         +.    .+++.|..++.+.+.+++..++++++.++... +....     .+++.|++++......++..+..++..+
T Consensus       344 ~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~-~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~i  417 (591)
T 2vgl_B          344 RLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV-EQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDI  417 (591)
T ss_dssp             HTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC-HHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             HHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-hhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence               11    24556667777788999999999999999864 33322     3678899999888888888888888888


Q ss_pred             HHhchh
Q 043116          395 LKVGEA  400 (482)
Q Consensus       395 ~~~~~~  400 (482)
                      +...+.
T Consensus       418 i~~~p~  423 (591)
T 2vgl_B          418 FRKYPN  423 (591)
T ss_dssp             HHHSCS
T ss_pred             HHHCcc
Confidence            765443

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.74  E-value=1.1e-14  Score=140.78  Aligned_cols=379  Identities=11%  Similarity=0.114  Sum_probs=278.1

Q ss_pred             hhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHH
Q 043116           20 LNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQLQFEAARALTNI   98 (482)
Q Consensus        20 ~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l   98 (482)
                      +.+.+..+.|+.|+.+|++++..++..++..|..++...+....+.+. ..++++.|+.+|+++. .-+|..++..|.++
T Consensus       115 d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~r-E~iRneallLL~~L  193 (651)
T 3grl_A          115 EIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSR-EVIRNDGVLLLQAL  193 (651)
T ss_dssp             HHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSS-HHHHHHHHHHHHHH
T ss_pred             HHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCch-HHHHHHHHHHHHHH
Confidence            456677889999999999999999999999999999875332445555 4599999999999988 89999999999999


Q ss_pred             hCCChHhHHHHHhCCChHHHHHhhCCCC----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhh----
Q 043116           99 ASGTSENTKVAIDHGAVPIFVKLLASPS----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKL----  170 (482)
Q Consensus        99 ~~~~~~~~~~~~~~g~i~~L~~ll~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~----  170 (482)
                      +.++++.++.+.-.|+++.|..++..+.    ..+...|+.++.|+...++..+..+.+.|.++.|..++....+.    
T Consensus       194 t~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~  273 (651)
T 3grl_A          194 TRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWS  273 (651)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCC
T ss_pred             hcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccH
Confidence            9999999999999999999999998644    37888999999999999999999999999999999988533221    


Q ss_pred             -hHHHH---HHHHHHHhhcCCCCC------C-hhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116          171 -SMLRT---ATWTLSNFCRGKPQP------P-FNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTNDKIQAVIE  237 (482)
Q Consensus       171 -~~~~~---a~~~L~~L~~~~~~~------~-~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~  237 (482)
                       ....+   ++.++.-++......      + .....|+++.++.++...  ...++..++.+++.+..+++...+.+.+
T Consensus       274 ~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~  353 (651)
T 3grl_A          274 AQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFAS  353 (651)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhh
Confidence             12333   555666666653210      1 112368899999998765  5789999999999999988877777665


Q ss_pred             hC---------cHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChhhHHHHHhc----------C---chHHHHHHhcCCC
Q 043116          238 AG---------VCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDFQTQCIINC----------G---ALRYLLGLLIHNH  294 (482)
Q Consensus       238 ~~---------~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~----------~---~i~~L~~ll~~~~  294 (482)
                      ..         ++..++.++.+ ....+|..++.++..+..+++.....+...          +   .-..+...+-+. 
T Consensus       354 ~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~-  432 (651)
T 3grl_A          354 VNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFST-  432 (651)
T ss_dssp             CEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSS-
T ss_pred             ccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccC-
Confidence            32         34445555544 446789999999999999887655555432          1   112344555566 


Q ss_pred             chhHHHHHHHHHHHHhcCCHHHHHHHHH--------cC---ChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHH
Q 043116          295 NKSIKKEVCWIISNITAGNREQIQAVID--------AG---LIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKH  362 (482)
Q Consensus       295 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~~---~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~  362 (482)
                      ++.--+-|+.++..+..++++....+..        ..   .++.+...+. ..++.++..-+..|+.+.. +++.....
T Consensus       433 d~~~~wfAavil~hll~~n~~~K~~~l~v~l~~~~ge~~vtliq~~~~~L~~~~~~ri~vgyL~LL~~WL~-e~p~AV~d  511 (651)
T 3grl_A          433 DSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQQCTNILSQGSKIQTRVGLLMLLCTWLS-NCPIAVTH  511 (651)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCCCCTTCCCCBHHHHHHHHTTTTCCHHHHHHHHHHHHHHHT-TCHHHHHH
T ss_pred             chHHHHHHHHHHHHHHcCCHHHHHHHHhCcccccCCCCcccHHHHHHHHHhcCCchhHHHHHHHHHHHHHh-CChHHHHH
Confidence            7766677899999998888876655444        11   2555566655 3456666666666666666 47888888


Q ss_pred             HHHcCC-hHHHHhcCCC--CCH--HHHHHHHHHHHHHHHhchhc
Q 043116          363 LVREGC-VKPLCDLLPC--PDP--QIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       363 l~~~~~-l~~L~~ll~~--~~~--~v~~~~l~~L~~l~~~~~~~  401 (482)
                      +...+. ++.|++.+.+  ++.  -++-.|.-.|+-.+++..+.
T Consensus       512 FL~~~s~l~~L~~~i~~~~~~~~~lvqGL~a~LLGi~yef~~~~  555 (651)
T 3grl_A          512 FLHNSANVPFLTGQIAENLGEEEQLVQGLCALLLGISIYFNDNS  555 (651)
T ss_dssp             HHHSTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHcCCchHHHHHHHHHhccCcchHHHHHHHHHHHHHHhhccCCC
Confidence            888764 8888877643  222  34555666666667665543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.70  E-value=2.7e-15  Score=136.54  Aligned_cols=258  Identities=14%  Similarity=0.093  Sum_probs=201.5

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh
Q 043116           67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR  146 (482)
Q Consensus        67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~  146 (482)
                      ...+.++.|+..|.+++ +.+|..|+++|+++..  +         +.++.|+.++.++++.+|..|+++|+.+......
T Consensus        20 ~~~~~i~~L~~~L~~~~-~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~   87 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC   87 (280)
T ss_dssp             HHTSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHhhHHHHHHHHHcCC-HHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc
Confidence            35678999999999988 9999999999999963  2         3578899999999999999999999999643222


Q ss_pred             hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhcc
Q 043116          147 CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD  226 (482)
Q Consensus       147 ~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~  226 (482)
                      ...      .++.+...+..+++..++..++++|..+....+    .....+++.+..++.++++.++..++++|+++..
T Consensus        88 ~~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~  157 (280)
T 1oyz_A           88 EDN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND  157 (280)
T ss_dssp             HHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--
T ss_pred             chH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC
Confidence            111      233343333367788999999999999985431    1235788999999999999999999999998763


Q ss_pred             CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116          227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       227 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L  306 (482)
                                 .+.++.|..++.++++.++..++++|+.+....+         ..++.+...+.++ ++.+|..|+++|
T Consensus       158 -----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~~~vR~~A~~aL  216 (280)
T 1oyz_A          158 -----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-NEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-CHHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                       2478999999999999999999999999854332         3567888999888 999999999999


Q ss_pred             HHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHH
Q 043116          307 SNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVT  385 (482)
Q Consensus       307 ~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~  385 (482)
                      +++.  +         ...++.|+..+.++  +++..++.+|+.+..   +         .+++.|.+++.+ ++++++.
T Consensus       217 ~~~~--~---------~~~~~~L~~~l~d~--~vr~~a~~aL~~i~~---~---------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRK--D---------KRVLSVLCDELKKN--TVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTT--C---------GGGHHHHHHHHTSS--SCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhC--C---------HhhHHHHHHHhcCc--cHHHHHHHHHHhcCc---h---------hhhHHHHHHHhcCCCcHHHH
Confidence            9985  2         24788888888764  488999999998854   1         367888887764 5667777


Q ss_pred             HHHHHHH
Q 043116          386 VCLIGLE  392 (482)
Q Consensus       386 ~~l~~L~  392 (482)
                      .++..|.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7776664

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.69  E-value=1.1e-15  Score=153.71  Aligned_cols=374  Identities=14%  Similarity=0.158  Sum_probs=231.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      ++.+.+++.+.++.++..|+.++.++.... ++..   ...++++.+..+|.+++ +.++..|+.+|+.++.++++....
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~---~~~~~~~~l~~lL~d~d-~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMV---EDQGFLDSLRDLIADSN-PMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCH---HHHHHHHHHHHTTSCSC-HHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhc---ccccHHHHHHHHhCCCC-hhHHHHHHHHHHHHHhhCCCccch
Confidence            566888999999999999999999998865 3322   23567899999999888 999999999999999866543100


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC-
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK-  187 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~-  187 (482)
                      -...+.+..|+..+.+.++-.+...+.+++.++...+....     .+++.+...+ ++.+..++..|++++.++.... 
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l-~~~~~~V~~ea~~~i~~l~~~~~  271 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRL-SHANSAVVLSAVKVLMKFLELLP  271 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCS-CSSTTHHHHHHHHHHHHSCCSCC
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHH-cCCChHHHHHHHHHHHHHhhccC
Confidence            00112356677777778888888899999988754433221     2455666666 6778899999999999997532 


Q ss_pred             --CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHH----------------------HHH---Hh--
Q 043116          188 --PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQ----------------------AVI---EA--  238 (482)
Q Consensus       188 --~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~----------------------~~~---~~--  238 (482)
                        +.........+.+.++.++ +++++++..++.+|..+....+....                      .+.   +.  
T Consensus       272 ~~~~~~~~~~~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          272 KDSDYYNMLLKKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             BTTBSHHHHHHHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred             CCHHHHHHHHHHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence              2121122345566667655 47899999999999988753221110                      000   00  


Q ss_pred             --CcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH
Q 043116          239 --GVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ  316 (482)
Q Consensus       239 --~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~  316 (482)
                        .+++.|..++.+.+..++..++++|+.++...+....     ..++.|+.++... ...++.++..++.++....++.
T Consensus       351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p~~  424 (591)
T 2vgl_B          351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTK-VNYVVQEAIVVIRDIFRKYPNK  424 (591)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTC-CHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHccc-chHHHHHHHHHHHHHHHHCcch
Confidence              1233344444445555555555555555544332211     2344555555555 4455555555555554322221


Q ss_pred             HHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          317 IQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       317 ~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                           ...+++.|.+.+. ..+++++..++|+|+........  .     ...++.+.+-+...++.++..++.++.+++
T Consensus       425 -----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~--~-----~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~  492 (591)
T 2vgl_B          425 -----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN--A-----DELLESFLEGFHDESTQVQLTLLTAIVKLF  492 (591)
T ss_dssp             -----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT--H-----HHHHHHHSTTCSSSCHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC--H-----HHHHHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence                 1235566666665 34567777788888877653221  0     123455555555667788888888888888


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHhh-cCCCHHHHHHHHHHHHHh
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQ-SHDNNDIHEMSVKILETY  448 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~~~v~~~a~~~l~~~  448 (482)
                      ...+...           ...+     ...+.... ++.+.+|+++|...+.-+
T Consensus       493 ~~~p~~~-----------~~~i-----~~ll~~~~~d~~d~evrdRA~~y~~ll  530 (591)
T 2vgl_B          493 LKKPSET-----------QELV-----QQVLSLATQDSDNPDLRDRGYIYWRLL  530 (591)
T ss_dssp             TTCCSTT-----------HHHH-----HHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred             hcCchHH-----------HHHH-----HHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence            6433210           1111     12233333 458899999998776544

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.66  E-value=1.2e-14  Score=132.21  Aligned_cols=256  Identities=12%  Similarity=0.045  Sum_probs=199.1

Q ss_pred             hhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           25 KFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        25 ~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      ....++.|++.|.++++.++..|++.|.++...            +.++.|+.++.+++ +.+|..|+++|+.+..... 
T Consensus        21 ~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~d~~-~~vR~~A~~aL~~l~~~~~-   86 (280)
T 1oyz_A           21 KKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICKK-   86 (280)
T ss_dssp             HTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCTT-
T ss_pred             HHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhccccc-
Confidence            445899999999999999999999999988631            25888999999998 8999999999999975222 


Q ss_pred             hHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      ...     .+++.|. .++.++++.+|..++++|+++....+....     ..++.++..+ .++++.++..++++|.++
T Consensus        87 ~~~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l-~d~~~~vR~~a~~aL~~~  155 (280)
T 1oyz_A           87 CED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITA-FDKSTNVRRATAFAISVI  155 (280)
T ss_dssp             THH-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHT-TCSCHHHHHHHHHHHHTC
T ss_pred             cch-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHh-hCCCHHHHHHHHHHHHhc
Confidence            111     1234444 246788999999999999999743332211     2467788888 778899999999999987


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI  263 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  263 (482)
                      ...          ..++.|..++.++++.++..++++|+.+....+         ..++.+..++.++++.++..++++|
T Consensus       156 ~~~----------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          156 NDK----------ATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             -------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             CCH----------HHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            542          368899999999999999999999999864332         2457889999999999999999999


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHH
Q 043116          264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKK  342 (482)
Q Consensus       264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~  342 (482)
                      +++..           ...++.|+..+.++ +  ++..++++|+.+..  +         ..++.|.+++.+ .++++..
T Consensus       217 ~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~~--~---------~~~~~L~~~l~~~~~~~~~~  271 (280)
T 1oyz_A          217 SYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELGD--K---------TLLPVLDTMLYKFDDNEIIT  271 (280)
T ss_dssp             HHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHCC--G---------GGHHHHHHHHTTSSCCHHHH
T ss_pred             HHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcCc--h---------hhhHHHHHHHhcCCCcHHHH
Confidence            99862           24678889999775 4  89999999998843  2         478888888874 5677777


Q ss_pred             HHHHHHH
Q 043116          343 EAAWVIS  349 (482)
Q Consensus       343 ~a~~aL~  349 (482)
                      .++.++.
T Consensus       272 ~~~~~l~  278 (280)
T 1oyz_A          272 SAIDKLK  278 (280)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            7777664

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.64  E-value=3.7e-14  Score=150.38  Aligned_cols=396  Identities=14%  Similarity=0.164  Sum_probs=253.2

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           28 ILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        28 ~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .++.+.+.++++  ++.++..|+.++..++..-............+++.+...+.+++ ++++..++.+|..++...++.
T Consensus       173 ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~-~~vr~~a~~~l~~l~~~~~~~  251 (876)
T 1qgr_A          173 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD-TRVRVAALQNLVKIMSLYYQY  251 (876)
T ss_dssp             HHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHHHHHhHHH
Confidence            467777888766  68899999999999876421100001111235777778787777 899999999999998766555


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh----------------------hHHHHHHhCChHHHHHH
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR----------------------CRDFVLSQGALIPLLAE  163 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~----------------------~~~~~~~~~~i~~l~~~  163 (482)
                      ....+...+++.++..+.+.++.++..+++++.+++.....                      .+..+  ..+++.++..
T Consensus       252 ~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ll~~ll~~  329 (876)
T 1qgr_A          252 METYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL--QYLVPILTQT  329 (876)
T ss_dssp             CHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH--HHHhHHHHHH
Confidence            44445557889999988888999999999999988743110                      01111  2245666777


Q ss_pred             Hcc------hhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-HHHHHHH
Q 043116          164 LNE------HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-DKIQAVI  236 (482)
Q Consensus       164 l~~------~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~  236 (482)
                      +..      +.+..++..+..++..++...+   ......+++.+...+.++++.++..++++++.++.... +......
T Consensus       330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~---~~~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~  406 (876)
T 1qgr_A          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE---DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV  406 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHCc---HhhHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            642      2245678888888888886543   23456788888888999999999999999999997654 3333222


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH--HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116          237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT--QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR  314 (482)
Q Consensus       237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  314 (482)
                       ..+++.++..+.++++.+|..|++++++++...+...  ... -..+++.++..+.+  ++.++..++|++.+++....
T Consensus       407 -~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-l~~~l~~l~~~l~~--~~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          407 -IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY-LAPLLQCLIEGLSA--EPRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT-HHHHHHHHHHHTTS--CHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH-HHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhh
Confidence             3578899999999999999999999999997543311  001 12467788888866  37899999999999985311


Q ss_pred             --------------HHHHHHHHcCChHHHHHHHhcC---ChhHHHHHHHHHHHh--------------------------
Q 043116          315 --------------EQIQAVIDAGLIGPIVNLLQDA---EFGTKKEAAWVISNA--------------------------  351 (482)
Q Consensus       315 --------------~~~~~l~~~~~i~~L~~ll~~~---~~~~~~~a~~aL~~l--------------------------  351 (482)
                                    +.....+ ..+++.|+..+...   +..++..+..++..+                          
T Consensus       483 ~~~~~~~~~~~~~~~~l~~~~-~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~  561 (876)
T 1qgr_A          483 EAADVADDQEEPATYCLSSSF-ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQV  561 (876)
T ss_dssp             HTTSCTTSCCCCCCCSSTTTH-HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred             hccccccccccccchhhhHhH-HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHH
Confidence                          0011111 12455555555432   234444444444444                          


Q ss_pred             ------------------------------hcCCC-HHHHHHHHHcCChHHHHhcCCCCC--HHHHHHHHHHHHHHHHhc
Q 043116          352 ------------------------------TSGGT-HEQIKHLVREGCVKPLCDLLPCPD--PQIVTVCLIGLENILKVG  398 (482)
Q Consensus       352 ------------------------------~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~l~~L~~l~~~~  398 (482)
                                                    +.... .....++  ..+++.+..++++.+  +.++..++.++..++...
T Consensus       562 ~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~  639 (876)
T 1qgr_A          562 LQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQIS--DVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVL  639 (876)
T ss_dssp             HTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTH--HHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHH--HHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHH
Confidence                                          33222 1111111  124666777777664  478888999999988753


Q ss_pred             hhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC-CHHHHHHHHHHHHHhc
Q 043116          399 EAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD-NNDIHEMSVKILETYW  449 (482)
Q Consensus       399 ~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~-~~~v~~~a~~~l~~~~  449 (482)
                      ...        ..++...     .++.+.....+. ++.++..|...+..+.
T Consensus       640 ~~~--------~~~~~~~-----~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          640 GGE--------FLKYMEA-----FKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             GGG--------GGGGHHH-----HHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             Hhh--------HHHHHHH-----HHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            221        1122222     245555555444 7778777776665543

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.63  E-value=4.5e-14  Score=149.45  Aligned_cols=355  Identities=14%  Similarity=0.220  Sum_probs=245.2

Q ss_pred             ccHHHHHHHhcC-------CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHh
Q 043116           27 EILPTMVAGVWS-------DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIA   99 (482)
Q Consensus        27 ~~i~~l~~~l~s-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~   99 (482)
                      ..+|.++..+..       +++.++..+..+|..++...+....     ..+++.+.+.+.+++ ..+|..|+++++.++
T Consensus       324 ~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~-----~~l~~~l~~~l~~~~-~~~r~~a~~~l~~i~  397 (861)
T 2bpt_A          324 DVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHIL-----EPVLEFVEQNITADN-WRNREAAVMAFGSIM  397 (861)
T ss_dssp             HHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGH-----HHHHHHHHHHTTCSS-HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHhHH-----HHHHHHHHHHcCCCC-hhHHHHHHHHHHHHH
Confidence            467888888874       2357888899999888875321111     235667777788888 799999999999999


Q ss_pred             CCCh-HhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh---HHHHHHhCChHHHHHHHcchhhhhHHHH
Q 043116          100 SGTS-ENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC---RDFVLSQGALIPLLAELNEHAKLSMLRT  175 (482)
Q Consensus       100 ~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~~~~i~~l~~~l~~~~~~~~~~~  175 (482)
                      .... +.....++ .+++.++..+.++++.+|..++|+++.++......   ...+  ..+++.++..+.+ . +.++..
T Consensus       398 ~~~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~--~~~l~~l~~~l~~-~-~~v~~~  472 (861)
T 2bpt_A          398 DGPDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL--PGVVQACLIGLQD-H-PKVATN  472 (861)
T ss_dssp             SSSCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH--HHHHHHHHHHHTS-C-HHHHHH
T ss_pred             cCCCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH--HHHHHHHHHHhcc-C-hHHHHH
Confidence            7542 33333333 47888999999999999999999999998431110   0011  1246677777733 3 788999


Q ss_pred             HHHHHHHhhcCCC----CCChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC
Q 043116          176 ATWTLSNFCRGKP----QPPFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG  249 (482)
Q Consensus       176 a~~~L~~L~~~~~----~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~  249 (482)
                      +++++.+++....    .........+++.+...+.+.+  +.++..++.+++.++..........+. .+++.++..+.
T Consensus       473 a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~  551 (861)
T 2bpt_A          473 CSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLG  551 (861)
T ss_dssp             HHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHH
Confidence            9999999987532    2222345788889999998544  789999999999998654433222222 34555555553


Q ss_pred             C---------------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch-hHHHHHHHHHHHHhcCC
Q 043116          250 H---------------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK-SIKKEVCWIISNITAGN  313 (482)
Q Consensus       250 ~---------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~-~v~~~a~~~L~nl~~~~  313 (482)
                      .               ....++..++.+|.+++...+....... ..+++.++..+++. +. .++..++++++.++...
T Consensus       552 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~-~~~~v~~~~~~~l~~l~~~~  629 (861)
T 2bpt_A          552 QTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKK-DSAFIEDDVFYAISALAASL  629 (861)
T ss_dssp             HHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHST-TGGGTHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccC-CCCcHHHHHHHHHHHHHHHH
Confidence            2               1345778899999999875443222111 25778888888887 56 89999999999998632


Q ss_pred             HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCC--HHHHHHHHHHH
Q 043116          314 REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPD--PQIVTVCLIGL  391 (482)
Q Consensus       314 ~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~--~~v~~~~l~~L  391 (482)
                      .......+. .+++.++..+.+.++.++..++.++..++.........++  ..+++.+.+.+.+++  ++++..++.++
T Consensus       630 ~~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l  706 (861)
T 2bpt_A          630 GKGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVF  706 (861)
T ss_dssp             GGGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred             hhhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHH
Confidence            232333333 3888999999888889999999999998765433222222  236777777777654  78999999999


Q ss_pred             HHHHHhc
Q 043116          392 ENILKVG  398 (482)
Q Consensus       392 ~~l~~~~  398 (482)
                      ..++...
T Consensus       707 ~~l~~~~  713 (861)
T 2bpt_A          707 GDIASNI  713 (861)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9998764

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.63  E-value=2.6e-14  Score=151.26  Aligned_cols=396  Identities=17%  Similarity=0.160  Sum_probs=257.6

Q ss_pred             cHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           28 ILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        28 ~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .++.+...+.++  ++.++..|+.++..+...-............+++.+...+.+++ +++|..++.+|..++...++.
T Consensus       180 ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~-~~~r~~a~~~l~~l~~~~~~~  258 (861)
T 2bpt_A          180 ILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED-IEVQAAAFGCLCKIMSKYYTF  258 (861)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSC-HHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHHHHHH
Confidence            467778888766  79999999999998764321000000111235677777888888 899999999999998744433


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------------------hHHHHHHhCChHHHHHHHcch
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR------------------CRDFVLSQGALIPLLAELNEH  167 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------------~~~~~~~~~~i~~l~~~l~~~  167 (482)
                      ....+...+++.+...+.+.++.++..|+.++..++.....                  .+..+  ..+++.++..+.+.
T Consensus       259 ~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~il~~ll~~l~~~  336 (861)
T 2bpt_A          259 MKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI--KDVVPNLLNLLTRQ  336 (861)
T ss_dssp             CHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH--HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH--HHHHHHHHHHHHhc
Confidence            22223225677788888889999999999999988743211                  11111  23567777777432


Q ss_pred             ------hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCc
Q 043116          168 ------AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-DKIQAVIEAGV  240 (482)
Q Consensus       168 ------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~  240 (482)
                            .+..++..+..+|..++...+   ......+++.+...+.+.++.++..++.+++.++.... ........ .+
T Consensus       337 ~~d~~d~~~~~r~~a~~~L~~l~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~i  412 (861)
T 2bpt_A          337 NEDPEDDDWNVSMSAGACLQLFAQNCG---NHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVH-QA  412 (861)
T ss_dssp             CCC-CCCCCHHHHHHHHHHHHHHHHHG---GGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHH-HH
T ss_pred             ccccccccCcHHHHHHHHHHHHHHHcc---HhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHH-HH
Confidence                  224677788899988886532   23456788888888889999999999999999997653 33332332 57


Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC----HH
Q 043116          241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN----RE  315 (482)
Q Consensus       241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~----~~  315 (482)
                      ++.++..+.++++.+|..++++++.++....... ..-.-..+++.++..+.+.  +.++..+++++.+++...    +.
T Consensus       413 l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~~~~~~~~~  490 (861)
T 2bpt_A          413 LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVEQLAEATPS  490 (861)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHhcccccch
Confidence            8889999999999999999999999986422110 0001124677888888654  789999999999998631    12


Q ss_pred             HHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC---------------
Q 043116          316 QIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC---------------  378 (482)
Q Consensus       316 ~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~---------------  378 (482)
                      .....++ .+++.|+..+.+.  ++.++..++.+++.++.........++..  .++.+++.+..               
T Consensus       491 ~l~~~~~-~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~--l~~~l~~~l~~~~~~~~~i~~~~~~~  567 (861)
T 2bpt_A          491 PIYNFYP-ALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSAS--ISTFVMDKLGQTMSVDENQLTLEDAQ  567 (861)
T ss_dssp             GGGGGHH-HHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHH--HHHHHHHHHHHHTTSCGGGCCHHHHH
T ss_pred             hhHHHHH-HHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHHH--HHHHHHHHHHHHHhhhcccCChhhHH
Confidence            2222222 4677888888743  37899999999999987554333222221  34444444321               


Q ss_pred             CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCH-HHHHHHHHHHHHh
Q 043116          379 PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNN-DIHEMSVKILETY  448 (482)
Q Consensus       379 ~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~-~v~~~a~~~l~~~  448 (482)
                      ...+++..++.+|..++......        ..++...     .++.+.++..+.+. .+++.+...+..+
T Consensus       568 ~~~~~~~~~~~~l~~l~~~~~~~--------~~~~~~~-----l~~~l~~~l~~~~~~~v~~~~~~~l~~l  625 (861)
T 2bpt_A          568 SLQELQSNILTVLAAVIRKSPSS--------VEPVADM-----LMGLFFRLLEKKDSAFIEDDVFYAISAL  625 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCGGG--------TGGGHHH-----HHHHHHHHHHSTTGGGTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhh--------hHHHHHH-----HHHHHHHHHccCCCCcHHHHHHHHHHHH
Confidence            13457778889999888754431        1112222     24445555554444 5566555555443

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.63  E-value=6.9e-15  Score=148.53  Aligned_cols=362  Identities=13%  Similarity=0.074  Sum_probs=257.2

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      -.+..+.+-++++++.++..|+++|.++...       .+. ..+++.+.+++.+++ +.+|..|+.++.++...+|+..
T Consensus       107 l~in~l~kDL~~~n~~vr~lAL~~L~~i~~~-------~~~-~~l~~~l~~~L~~~~-~~VRk~A~~al~~l~~~~p~~v  177 (618)
T 1w63_A          107 LMTNCIKNDLNHSTQFVQGLALCTLGCMGSS-------EMC-RDLAGEVEKLLKTSN-SYLRKKAALCAVHVIRKVPELM  177 (618)
T ss_dssp             HHHHHHHHHHSCSSSHHHHHHHHHHHHHCCH-------HHH-HHHHHHHHHHHHSCC-HHHHHHHHHHHHHHHHHCGGGG
T ss_pred             HHHHHHHHhcCCCCHhHHHHHHHHHHhcCCH-------HHH-HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHHChHHH
Confidence            4577888888899999999999999998632       122 346888899999998 9999999999999988666643


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcc--------------hhhhhH
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNE--------------HAKLSM  172 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--------------~~~~~~  172 (482)
                      .     +.++.+..++.+.++.++..|+++|..++..++.....+  ...++.++..|.+              ..++-.
T Consensus       178 ~-----~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~  250 (618)
T 1w63_A          178 E-----MFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFL  250 (618)
T ss_dssp             G-----GGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHH
T ss_pred             H-----HHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChH
Confidence            2     678888899999999999999999999997655432222  2578888887743              135666


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH
Q 043116          173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK  246 (482)
Q Consensus       173 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~  246 (482)
                      +..++.+|..++...+    .......+.|..++.      +.+..+...+++++..+... +..    .. ..+..+..
T Consensus       251 q~~il~~L~~l~~~~~----~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~-~~l----~~-~a~~~L~~  320 (618)
T 1w63_A          251 QVRILRLLRILGRNDD----DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSE-SGL----RV-LAINILGR  320 (618)
T ss_dssp             HHHHHHHHHHHTTTCH----HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCC-HHH----HH-HHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCC-HHH----HH-HHHHHHHH
Confidence            7778888888887542    112334444555443      23467888999999887642 211    11 35678888


Q ss_pred             hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCCh
Q 043116          247 LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLI  326 (482)
Q Consensus       247 ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i  326 (482)
                      ++.++++.++..|+.+|+.++...+...     ......++..+.++ +..+|..|..++..++....  +..     ++
T Consensus       321 ~L~~~d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~~~n--v~~-----iv  387 (618)
T 1w63_A          321 FLLNNDKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLKDL-DVSIKRRAMELSFALVNGNN--IRG-----MM  387 (618)
T ss_dssp             HHTCSSTTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGGSS-CHHHHHHHHHHHHHHCCSSS--THH-----HH
T ss_pred             HHhCCCCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHccCC-ChhHHHHHHHHHHHHccccc--HHH-----HH
Confidence            8999999999999999999987544322     13566788889988 99999999999999986321  222     45


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCC
Q 043116          327 GPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDN  406 (482)
Q Consensus       327 ~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~  406 (482)
                      +.|...+.+.+.+++..++.+|+.++....+... .     +++.|+++++.....+...+...+..++...+..     
T Consensus       388 ~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~-~-----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l-----  456 (618)
T 1w63_A          388 KELLYFLDSCEPEFKADCASGIFLAAEKYAPSKR-W-----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEM-----  456 (618)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHH-H-----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCST-----
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHH-H-----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhH-----
Confidence            7788888889999999999999999875332222 2     3677777777666666666666777777543321     


Q ss_pred             CCcccHHHHHHHHhchHHHHHHhhc--CCCHHHHHHHHHHHHHhcC
Q 043116          407 IGDVNQYAQLVEEAEGLEKIENLQS--HDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       407 ~~~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~~~~~  450 (482)
                             ...     .+..|.++..  ...+.+...+.|++-.|-.
T Consensus       457 -------~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~  490 (618)
T 1w63_A          457 -------HAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGD  490 (618)
T ss_dssp             -------HHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred             -------HHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence                   111     1223333322  1344556678999998863

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.59  E-value=2.2e-13  Score=133.42  Aligned_cols=391  Identities=11%  Similarity=0.076  Sum_probs=265.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      +..++..+.++|+..+..|-..|.++....         ..+++..|..++.+++ ++.+|..|+..|.++.........
T Consensus         3 l~~~L~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~   73 (462)
T 1ibr_B            3 LITILEKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIK   73 (462)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHH
Confidence            445666677889999999999998865421         1235667777776652 389999999999998764311110


Q ss_pred             H-----H------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchh--hhhHHH
Q 043116          108 V-----A------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHA--KLSMLR  174 (482)
Q Consensus       108 ~-----~------~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~--~~~~~~  174 (482)
                      .     .      ....+-..++..+.++++.+ ..+..+++.++.......   .-.+.++.++..+ .+.  +..++.
T Consensus        74 ~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~---~w~~ll~~L~~~l-~~~~~~~~~r~  148 (462)
T 1ibr_B           74 AQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN---QWPELIPQLVANV-TNPNSTEHMKE  148 (462)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT---CCTTHHHHHHHHH-HCTTCCHHHHH
T ss_pred             HHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc---ccHHHHHHHHHHh-ccCCCCHHHHH
Confidence            0     0      01123355777788777778 888889998874321100   0124677888888 444  778899


Q ss_pred             HHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhhCC
Q 043116          175 TATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTNDKIQ-AVIEAGVCPRLVKLLGH  250 (482)
Q Consensus       175 ~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~  250 (482)
                      .++.+|..++... +.........+++.+...+.++  ++.++..++.++.++......... .....-+++.+...+.+
T Consensus       149 ~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~  228 (462)
T 1ibr_B          149 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC  228 (462)
T ss_dssp             HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCC
Confidence            9999999999753 2223344467889999999887  789999999999997754321110 01111245666677788


Q ss_pred             CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH---------------
Q 043116          251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE---------------  315 (482)
Q Consensus       251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~---------------  315 (482)
                      +++.++..++.+|..++...+......+..++++.++..+.+. ++.++..++..+..++.....               
T Consensus       229 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~  307 (462)
T 1ibr_B          229 PDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPP  307 (462)
T ss_dssp             SSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCc
Confidence            8999999999999999875554322222226777888888887 889999999999988753110               


Q ss_pred             ------HHHHHHHcCChHHHHHHHhc-------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH
Q 043116          316 ------QIQAVIDAGLIGPIVNLLQD-------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ  382 (482)
Q Consensus       316 ------~~~~l~~~~~i~~L~~ll~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  382 (482)
                            ..+..+ ..++|.+++.+..       ++..++..|..+|..++........     ..+++.+...+.++++.
T Consensus       308 ~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-----~~~~~~l~~~l~~~~~~  381 (462)
T 1ibr_B          308 EHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-----PHVLPFIKEHIKNPDWR  381 (462)
T ss_dssp             SCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-----HHHHHHHHHHTTCSSHH
T ss_pred             cchhHHHHHHHh-hhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccHHHH-----HHHHHHHHHHhcCCChH
Confidence                  011111 2356667776643       2457899999999999764332221     23677888889999999


Q ss_pred             HHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC
Q 043116          383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR  452 (482)
Q Consensus       383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~  452 (482)
                      ++..++.+|..+........          +...+  .+.++.+...+.++++.|+..|.+.+.++...-
T Consensus       382 ~r~aal~~l~~l~~~~~~~~----------~~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          382 YRDAAVMAFGCILEGPEPSQ----------LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HHHHHHHHHHHTSSSSCTTT----------TCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHhcCCcHHH----------HHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            99999999999986322110          01111  345788888899999999999999999887643

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.58  E-value=1.3e-13  Score=146.12  Aligned_cols=408  Identities=13%  Similarity=0.153  Sum_probs=261.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH-
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT-  106 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~-  106 (482)
                      .++.+.+.++++++.++..|+++|..++.....+.... .-..++|.++..+.+++ +.+|..|++++++++...+... 
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~-~~~~~l~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~  444 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPS-VVVRDTAAWTVGRICELLPEAAI  444 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHH-HHHHHHHHHHHHHTCSS-HHHHHHHHHHHHHHHHHCGGGTS
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHH-HHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCchhcc
Confidence            45566677778889999999999999987642122222 22447899999999988 9999999999999987433210 


Q ss_pred             -HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh---------------hhHHHHHHhCChHHHHHHHcchh--
Q 043116          107 -KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS---------------RCRDFVLSQGALIPLLAELNEHA--  168 (482)
Q Consensus       107 -~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~---------------~~~~~~~~~~~i~~l~~~l~~~~--  168 (482)
                       ...+ ..+++.++..+.+. +.++..++++|.+++....               .....+  ..+++.++..+....  
T Consensus       445 ~~~~l-~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~~~~  520 (876)
T 1qgr_A          445 NDVYL-APLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSF--ELIVQKLLETTDRPDGH  520 (876)
T ss_dssp             STTTH-HHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTH--HHHHHHHHHHTTSCSSC
T ss_pred             cHHHH-HHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhHhH--HHHHHHHHHHHhCcCcc
Confidence             0111 14567888888774 8999999999999983211               011111  124666666664322  


Q ss_pred             hhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-----------CC----hhHHHHHHHHHHHhccCCc-HHH
Q 043116          169 KLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-----------ND----EKVLTDACRALAYLADGTN-DKI  232 (482)
Q Consensus       169 ~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-----------~~----~~~~~~~l~~L~~l~~~~~-~~~  232 (482)
                      +..++..+..++..+....+.........+++.++..+..           .+    ++++..++.++..++.... ...
T Consensus       521 ~~~~r~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~  600 (876)
T 1qgr_A          521 QNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDA  600 (876)
T ss_dssp             STTHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHCchhhHHHHHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhh
Confidence            3467778888999888876544444556777777766552           12    4567888999999886654 332


Q ss_pred             HHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHh
Q 043116          233 QAVIEAGVCPRLVKLLGHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNIT  310 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~  310 (482)
                      ... -..+++.++.++++..  +.++..++.+++.++..........+. .+++.+...+.+..++.+|..++++++.++
T Consensus       601 ~~~-~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~  678 (876)
T 1qgr_A          601 LQI-SDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLC  678 (876)
T ss_dssp             HTT-HHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             hHH-HHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHH
Confidence            211 1356788888887764  478999999999998643222221222 367888888877547889999999999998


Q ss_pred             cCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC----CH---
Q 043116          311 AGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP----DP---  381 (482)
Q Consensus       311 ~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~---  381 (482)
                      ......+...+. .+++.+++.+.+  .+.+++..+++++++++....++...++  ..+++.+...++.+    ++   
T Consensus       679 ~~~~~~~~~~~~-~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l--~~~~~~l~~~~~~~~~~~d~~~~  755 (876)
T 1qgr_A          679 RALQSNIIPFCD-EVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYL--EVVLNTLQQASQAQVDKSDYDMV  755 (876)
T ss_dssp             HHHGGGGHHHHH-HHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGH--HHHHHHHHHHHTCCCCTTCHHHH
T ss_pred             HHHHHhhhhhHH-HHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHhccCCCCChHHH
Confidence            632223333333 578888888886  4678999999999999763222222222  12556666655533    22   


Q ss_pred             ----HHHHHHHHHHHHHHHhchhccc--cCCCCcccHHHHHHHHhchHHHHHHhhcCC--CHHHHHHHHHHHHHhcCC
Q 043116          382 ----QIVTVCLIGLENILKVGEAEKN--TDNIGDVNQYAQLVEEAEGLEKIENLQSHD--NNDIHEMSVKILETYWCG  451 (482)
Q Consensus       382 ----~v~~~~l~~L~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~~~a~~~l~~~~~~  451 (482)
                          .++..++.++..++........  ..+.....++...+     ++.+..+..++  +..++..|..++..+...
T Consensus       756 ~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i-----~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~~  828 (876)
T 1qgr_A          756 DYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI-----LSFIDHIAGDEDHTDGVVACAAGLIGDLCTA  828 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH-----HHHHHHHHTCSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence                6788888888888765332100  00000122233333     34455554555  788999998888876543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.58  E-value=3.8e-13  Score=135.85  Aligned_cols=327  Identities=12%  Similarity=0.082  Sum_probs=235.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .++.+.+++++.++.++..|+.++.++.... ++..     .++++.+..++.+++ +.++..|+.+|..++..+++...
T Consensus       143 l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~-p~~v-----~~~~~~l~~lL~D~d-~~V~~~Al~~L~~i~~~~~~~~~  215 (618)
T 1w63_A          143 LAGEVEKLLKTSNSYLRKKAALCAVHVIRKV-PELM-----EMFLPATKNLLNEKN-HGVLHTSVVLLTEMCERSPDMLA  215 (618)
T ss_dssp             HHHHHHHHHHSCCHHHHHHHHHHHHHHHHHC-GGGG-----GGGGGGTTTSTTCCC-HHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHC-hHHH-----HHHHHHHHHHhCCCC-HhHHHHHHHHHHHHHHhChHHHH
Confidence            3688888999999999999999999999864 2222     267888889999888 99999999999999986665433


Q ss_pred             HHHhCCChHHHHHhhCC---------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-----ch
Q 043116          108 VAIDHGAVPIFVKLLAS---------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-----EH  167 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~---------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-----~~  167 (482)
                      .+.  ..++.++..|.+               .++-.+...+.+|+.++..++...+     ...+.+..++.     ++
T Consensus       216 ~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~  288 (618)
T 1w63_A          216 HFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKN  288 (618)
T ss_dssp             HHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSST
T ss_pred             HHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccc
Confidence            333  567888776642               4788888999999999976654322     24445555542     23


Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116          168 AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL  247 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  247 (482)
                      .+..+...+++++..+...     ......+++.+..++.+++++++..++.+|..++...+.    .+. .....++.+
T Consensus       289 ~~~aV~~ea~~~i~~l~~~-----~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~----~~~-~~~~~i~~~  358 (618)
T 1w63_A          289 VGNAILYETVLTIMDIKSE-----SGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN----AVQ-RHRSTIVDC  358 (618)
T ss_dssp             HHHHHHHHHHHHHHHSCCC-----HHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH----HHG-GGHHHHHHG
T ss_pred             hHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH----HHH-HHHHHHHHH
Confidence            4567888899998886432     223346788899999999999999999999999965432    222 356788999


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIG  327 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  327 (482)
                      +.+++..++..|+.+|..++....  ...     +++.+...+.+. +.++|..++.+|+.++...+.....     .++
T Consensus       359 l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~~~~~~~-----~v~  425 (618)
T 1w63_A          359 LKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKYAPSKRW-----HID  425 (618)
T ss_dssp             GGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSSCCCHHH-----HHH
T ss_pred             ccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHhCccHHH-----HHH
Confidence            999999999999999999986432  221     356778888877 8999999999999999743222222     367


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC--CCHHHHHHHHHHHHHHHHh
Q 043116          328 PIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC--PDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       328 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--~~~~v~~~~l~~L~~l~~~  397 (482)
                      .+++++......++..+..++..+....+ +....     ++..|.+.+.+  .+..+...++|+|+.+...
T Consensus       426 ~ll~lL~~~~~~v~~~~~~~l~~ii~~~p-~l~~~-----~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~  491 (618)
T 1w63_A          426 TIMRVLTTAGSYVRDDAVPNLIQLITNSV-EMHAY-----TVQRLYKAILGDYSQQPLVQVAAWCIGEYGDL  491 (618)
T ss_dssp             HHHHHHHHTGGGSCSSHHHHHHHHHHHSC-STHHH-----HHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHhcCh-hHHHH-----HHHHHHHHHhcccccHHHHHHHHHHHhhhHHH
Confidence            78888887766777777777777766422 22222     34445555442  2334455688888888653

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.56  E-value=3e-13  Score=148.34  Aligned_cols=407  Identities=12%  Similarity=0.095  Sum_probs=271.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENT  106 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~  106 (482)
                      ..++.+++.+.+.|++++..|...|.+....... ....-....+++.+++.+.+++ +.+|..|+.+|+.++...++. 
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~-~~~~~~~~~il~~Ll~~L~d~~-~~vR~~A~~~L~~l~~~~~~~-   82 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEY-   82 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHH-
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHccccc-CCChhHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhCCHH-
Confidence            3478889999999999999999999988765311 1111112346778889998888 899999999999998754431 


Q ss_pred             HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh------HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116          107 KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC------RDFVLSQGALIPLLAELNEHAKLSMLRTATWTL  180 (482)
Q Consensus       107 ~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~------~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  180 (482)
                        .. ..+++.++..+.++++.+|..|..+|+.++......      .... -..+++.++..+.++.+..++..++.++
T Consensus        83 --~~-~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l  158 (1230)
T 1u6g_C           83 --QV-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIM  158 (1230)
T ss_dssp             --HH-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred             --HH-HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence              11 135788888888888999999999999988433211      1111 1236888888884356778999999999


Q ss_pred             HHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-ChhhHHHH
Q 043116          181 SNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-SRLVLTAA  259 (482)
Q Consensus       181 ~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a  259 (482)
                      ..++...+..-......+++.+...+.++++.++..++.+++.++...++.   + -..+++.++..+.+. ++.++..+
T Consensus       159 ~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~~~~~~r~~a  234 (1230)
T 1u6g_C          159 ADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKNDSMSTTRTY  234 (1230)
T ss_dssp             HHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccCCchhHHHHH
Confidence            999965432222345788899999999999999999999999999765432   1 224577777777544 34688889


Q ss_pred             HHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-----
Q 043116          260 LRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-----  334 (482)
Q Consensus       260 ~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-----  334 (482)
                      +.+++.++...+..... .-..+++.++..+.+. ++.+|..+++++..++...++.+..++. .+++.++..+.     
T Consensus       235 ~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~~~~~~~l~-~li~~ll~~l~~d~~~  311 (1230)
T 1u6g_C          235 IQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVS-TIINICLKYLTYDPNY  311 (1230)
T ss_dssp             HHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHH-HHHHHHTTCCCCC---
T ss_pred             HHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHChHHHHHhHH-HHHHHHHHHhCCCCCC
Confidence            99999988754432211 1136889999999887 8899999999999998743322222221 23333333321     


Q ss_pred             --------------------------------cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHH
Q 043116          335 --------------------------------DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQ  382 (482)
Q Consensus       335 --------------------------------~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~  382 (482)
                                                      +....+|..|+.++..++.........+  -..+++.+...+.+.++.
T Consensus       312 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~--~~~l~~~l~~~l~d~~~~  389 (1230)
T 1u6g_C          312 NYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEF--YKTVSPALISRFKEREEN  389 (1230)
T ss_dssp             ---------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHH--HTTTHHHHHSTTSCSSSH
T ss_pred             CCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHH--HHHHHHHHHHHcCCCchH
Confidence                                            1124578899999999987433212222  245788899999888999


Q ss_pred             HHHHHHHHHHHHHHhchhccccCCCCcccHH------HHHHH--HhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          383 IVTVCLIGLENILKVGEAEKNTDNIGDVNQY------AQLVE--EAEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       383 v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~------~~~l~--~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      ++..++.++..++..........  .....+      ...+.  -...++.+.+...++++.++..+...+..+...
T Consensus       390 Vr~~a~~~l~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~  464 (1230)
T 1u6g_C          390 VKADVFHAYLSLLKQTRPVQSWL--CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNV  464 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHCCC--------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccccc--cCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            99999999988876432100000  000000      01110  112355566667788888888888877766554

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.55  E-value=2.6e-14  Score=139.97  Aligned_cols=361  Identities=12%  Similarity=0.097  Sum_probs=245.5

Q ss_pred             hccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcH-----------HHHHhcCCHHHHHHhhcCCCChHHHHHHH
Q 043116           26 FEILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPI-----------EKVIQSGVVPRFVEFLMREDYPQLQFEAA   92 (482)
Q Consensus        26 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~-----------~~~~~~g~~~~L~~ll~~~~~~~v~~~a~   92 (482)
                      .+.+..|+..+.++  ++.++..|+..|.++.... ....           ..-....+-..++..+.+++ +.+ ..++
T Consensus        34 ~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~-~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~-~~v-~~~~  110 (462)
T 1ibr_B           34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YRP-SSAS  110 (462)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SSS-CSHH
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHhcccc-chHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCC-chh-hHHH
Confidence            44556677777654  6899999999999998653 1000           00112234455777888877 678 8899


Q ss_pred             HHHHHHhCCC-hHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchh
Q 043116           93 RALTNIASGT-SENTKVAIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHA  168 (482)
Q Consensus        93 ~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~  168 (482)
                      .+++.++... +..    ...++++.|+..+.++  ++.+++.++.+|+.++... +..-.... ..+++.++..+.+..
T Consensus       111 ~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~  185 (462)
T 1ibr_B          111 QCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEE  185 (462)
T ss_dssp             HHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCC
Confidence            9999998632 110    1246789999999888  8999999999999998532 21101111 125677777884432


Q ss_pred             -hhhHHHHHHHHHHHhhcCCC-C-CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHH
Q 043116          169 -KLSMLRTATWTLSNFCRGKP-Q-PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLV  245 (482)
Q Consensus       169 -~~~~~~~a~~~L~~L~~~~~-~-~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~  245 (482)
                       +..++..+++++.++..... . ........+++.+...+.+++++++..++.+|..++...+......+..++++.++
T Consensus       186 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~  265 (462)
T 1ibr_B          186 PSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITI  265 (462)
T ss_dssp             CCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             68899999999998764321 0 01111123577777788888999999999999999865443222122225677778


Q ss_pred             HhhCCCChhhHHHHHHHHhHhhcCChh---------------------hHHHHHhcCchHHHHHHhcCC------CchhH
Q 043116          246 KLLGHRSRLVLTAALRTIGNIVTGDDF---------------------QTQCIINCGALRYLLGLLIHN------HNKSI  298 (482)
Q Consensus       246 ~ll~~~~~~v~~~a~~~L~~l~~~~~~---------------------~~~~l~~~~~i~~L~~ll~~~------~~~~v  298 (482)
                      ..+.+.++.++..++..+..++.....                     ..+... ..+++.++..+...      .+..+
T Consensus       266 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~p~l~~~l~~~d~d~~~~~~~~  344 (462)
T 1ibr_B          266 EAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNP  344 (462)
T ss_dssp             HHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCSH
T ss_pred             HHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHh-hhccHHHHHHHHhcccccccccchH
Confidence            888889999999999999988753210                     001001 23566677777432      14578


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC
Q 043116          299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC  378 (482)
Q Consensus       299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~  378 (482)
                      |..|+.+|..++...++   .++ ..+++.+...+.+.++.+|..|+.+++.++....++.... .-..+++.+...+.+
T Consensus       345 r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~-~l~~~~~~l~~~l~d  419 (462)
T 1ibr_B          345 CKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKD  419 (462)
T ss_dssp             HHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH-HHHHHHHHHHHHhcC
Confidence            99999999999873322   222 2467777788888999999999999999997544221111 114578999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhchh
Q 043116          379 PDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       379 ~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +++.++..++++|.++......
T Consensus       420 ~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          420 PSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHHHGGG
T ss_pred             CCHHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999976543

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.49  E-value=7.6e-13  Score=145.13  Aligned_cols=398  Identities=13%  Similarity=0.125  Sum_probs=256.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCc----HHHHHhcCCHHHHHHhhcC-CCChHHHHHHHHHHHHHhCCC
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSP----IEKVIQSGVVPRFVEFLMR-EDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~g~~~~L~~ll~~-~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      .++.+++.+.++++.++..|+.+|..++.......    ...-....++|.|+..+.+ ++ +.++..|+.+|..++...
T Consensus        87 i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~-~~~~~~al~~l~~~~~~~  165 (1230)
T 1u6g_C           87 IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQED-VSVQLEALDIMADMLSRQ  165 (1230)
T ss_dssp             HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSC-HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHHHh
Confidence            45666666666667777777777777765532210    0112234578889999984 66 899999999999998422


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      ++...... ..+++.+...+.++++.+|..|+.+|+.++...+.   .+ -...++.++..+....+...+..++.++..
T Consensus       166 ~~~l~~~~-~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~---~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~  240 (1230)
T 1u6g_C          166 GGLLVNFH-PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN---IV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAA  240 (1230)
T ss_dssp             CSSCTTTH-HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHH
T ss_pred             HhHHHHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH---HH-HHHHHHHHHHHhccCCchhHHHHHHHHHHH
Confidence            11100001 23567778888888999999999999999855432   11 123577888888554444567778888888


Q ss_pred             hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC------------
Q 043116          183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH------------  250 (482)
Q Consensus       183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~------------  250 (482)
                      ++...+..-......++|.+...+.+.+++++..++.++..++........... ..+++.++..+..            
T Consensus       241 l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~  319 (1230)
T 1u6g_C          241 ISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-STIINICLKYLTYDPNYNYDDEDED  319 (1230)
T ss_dssp             HHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH-HHHHHHHTTCCCCC-----------
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH-HHHHHHHHHHhCCCCCCCCcccccc
Confidence            887643322234578999999999999999999999999988864332211111 1234444444421            


Q ss_pred             -------------------------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHH
Q 043116          251 -------------------------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI  305 (482)
Q Consensus       251 -------------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~  305 (482)
                                               ..+.+|..|+.++..++...+......+ ..+++.++..+.+. +..+|..++.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~d~-~~~Vr~~a~~~  397 (1230)
T 1u6g_C          320 ENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKER-EENVKADVFHA  397 (1230)
T ss_dssp             -------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSCS-SSHHHHHHHHH
T ss_pred             cccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHH-HHHHHHHHHHcCCC-chHHHHHHHHH
Confidence                                     1245788999999999875443333333 35778888888777 88899999998


Q ss_pred             HHHHhc--CC-----------------HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116          306 ISNITA--GN-----------------REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE  366 (482)
Q Consensus       306 L~nl~~--~~-----------------~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~  366 (482)
                      +..++.  +.                 ......++ ..+++.+.+.+.++++.++..++.+++.++.........++  .
T Consensus       398 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l--~  474 (1230)
T 1u6g_C          398 YLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV-PNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--P  474 (1230)
T ss_dssp             HHHHHHHHCCC------------CCCHHHHHHHHT-THHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--H
T ss_pred             HHHHHHHhccccccccCccccccccchHHHHHHHh-hHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHH--H
Confidence            888775  11                 11122222 23566777778888999999999999998764321111111  2


Q ss_pred             CChHHHHhcCCCCCH--HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHH
Q 043116          367 GCVKPLCDLLPCPDP--QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKI  444 (482)
Q Consensus       367 ~~l~~L~~ll~~~~~--~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~  444 (482)
                      .+++.+...+.++++  .++..++..+..++......          .+...+  ...++.|.....+++..+...|...
T Consensus       475 ~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~----------~~~~~l--~~llp~L~~~l~d~~~~v~~~al~~  542 (1230)
T 1u6g_C          475 VLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQ----------VFHPHV--QALVPPVVACVGDPFYKITSEALLV  542 (1230)
T ss_dssp             HHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGG----------GGHHHH--TTTHHHHHHHHTCSSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHH----------HHHhHH--HHHHHHHHHHHcccchHHHHHHHHH
Confidence            367888888887764  88888888888887532211          112222  2345666666677777776666666


Q ss_pred             HHHhc
Q 043116          445 LETYW  449 (482)
Q Consensus       445 l~~~~  449 (482)
                      +..+.
T Consensus       543 l~~l~  547 (1230)
T 1u6g_C          543 TQQLV  547 (1230)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.45  E-value=6e-12  Score=109.09  Aligned_cols=192  Identities=21%  Similarity=0.224  Sum_probs=158.9

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      ....+.++.|++.|+++++.++..|+..|..+...            +.++.|+.++.+++ +.++..|+++|+.+..  
T Consensus        15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~~L~~~l~~~~-~~vr~~a~~aL~~~~~--   79 (211)
T 3ltm_A           15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDED-AWVRRAAADALGQIGD--   79 (211)
T ss_dssp             -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSC-HHHHHHHHHHHHHHCC--
T ss_pred             hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--
Confidence            34567899999999999999999999999987542            36899999999988 9999999999999853  


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                               .+.++.|+.++.++++.+|..|+++|+.+..  +         +.++.|+..+ .+++..++..++++|..
T Consensus        80 ---------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~  138 (211)
T 3ltm_A           80 ---------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGE  138 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-hCCCHHHHHHHHHHHHH
Confidence                     2468999999999999999999999999852  2         2577888888 77889999999999999


Q ss_pred             hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      +..          ...++.|..++.++++.++..++.+|+.+..           ...++.|..++.++++.++..|..+
T Consensus       139 ~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~a  197 (211)
T 3ltm_A          139 IGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNY  197 (211)
T ss_dssp             HCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHHHHHHHHH
Confidence            843          3578889999999999999999999999863           1346778888889999999999999


Q ss_pred             HhHhhcCCh
Q 043116          263 IGNIVTGDD  271 (482)
Q Consensus       263 L~~l~~~~~  271 (482)
                      |.++.....
T Consensus       198 L~~~~~~~~  206 (211)
T 3ltm_A          198 LETHKSFNH  206 (211)
T ss_dssp             HHC------
T ss_pred             HHhcCCCCC
Confidence            999876443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.44  E-value=7.9e-12  Score=108.34  Aligned_cols=187  Identities=21%  Similarity=0.180  Sum_probs=156.8

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116           69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR  148 (482)
Q Consensus        69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  148 (482)
                      .+.++.|+.+|++++ +.+|..|++.|+.+..           .+.++.|+.++.++++.+|..|+++|+.+..  +   
T Consensus        18 ~~~~~~L~~~L~~~~-~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--~---   80 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDS-YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E---   80 (211)
T ss_dssp             GGGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--G---
T ss_pred             HhHHHHHHHHHcCCC-HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H---
Confidence            457899999999988 9999999999998854           2578999999999999999999999999852  2   


Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~  228 (482)
                            +.++.++..+ .+.++.++..++++|..+..          ...++.|..++.++++.++..++.+|+.+..  
T Consensus        81 ------~~~~~L~~~l-~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--  141 (211)
T 3ltm_A           81 ------RAVEPLIKAL-KDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--  141 (211)
T ss_dssp             ------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--
T ss_pred             ------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--
Confidence                  3577888888 77888999999999998853          3578899999999999999999999999863  


Q ss_pred             cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                               ...++.|..++.++++.++..++.+|+.+..           ...++.|..+++++ ++.+|..|..+|.+
T Consensus       142 ---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~  200 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFARKVAVNYLET  200 (211)
T ss_dssp             ---------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHHHHHHHHHHHC
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHHHHHHHHHHHh
Confidence                     1357889999999999999999999999853           23567788888888 99999999999999


Q ss_pred             HhcC
Q 043116          309 ITAG  312 (482)
Q Consensus       309 l~~~  312 (482)
                      +...
T Consensus       201 ~~~~  204 (211)
T 3ltm_A          201 HKSF  204 (211)
T ss_dssp             ----
T ss_pred             cCCC
Confidence            8763

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.43  E-value=2.7e-11  Score=104.07  Aligned_cols=185  Identities=22%  Similarity=0.253  Sum_probs=156.3

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh
Q 043116          113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF  192 (482)
Q Consensus       113 g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~  192 (482)
                      +..+.+++.|.++++.+|..|+++|+.+..           .+.++.++..+ .+.+..++..++++|..+..       
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~-------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGD-------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCC-------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCC-------
Confidence            457899999999999999999999998852           13577888888 67788999999999998753       


Q ss_pred             hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChh
Q 043116          193 NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       193 ~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~  272 (482)
                         ...++.+..++.++++.++..++++|+.+..           ...++.+..++.++++.++..++++|+.+..    
T Consensus        75 ---~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----  136 (201)
T 3ltj_A           75 ---ERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD----  136 (201)
T ss_dssp             ---GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC----
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----
Confidence               3578899999999999999999999999763           1357889999999999999999999999853    


Q ss_pred             hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhh
Q 043116          273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT  352 (482)
Q Consensus       273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~  352 (482)
                             ...++.|..++.++ ++.+|..|+++|+.+.  .++         .++.|..++.++++.++..|..+|..+-
T Consensus       137 -------~~~~~~L~~~l~d~-~~~vr~~A~~aL~~~~--~~~---------~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          137 -------ERAVEPLIKALKDE-DGWVRQSAADALGEIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             -------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHC--SHH---------HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             -------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--chh---------HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                   24678899999988 9999999999999983  333         5677888889999999999999999875


Q ss_pred             c
Q 043116          353 S  353 (482)
Q Consensus       353 ~  353 (482)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.41  E-value=1.2e-11  Score=106.22  Aligned_cols=185  Identities=22%  Similarity=0.230  Sum_probs=157.2

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      .+..+.+++.|+++++.++..|+..|..+...            +.++.|+.++.+++ +.++..|+++|+.+..  +  
T Consensus        13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~~~~-~~vr~~a~~~L~~~~~--~--   75 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDED-AWVRRAAADALGQIGD--E--   75 (201)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--G--
T ss_pred             CcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh------------hHHHHHHHHHcCCC-HHHHHHHHHHHHhhCC--H--
Confidence            35679999999999999999999999987542            36899999999888 9999999999999853  2  


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                             +.++.|+.++.++++.+|..|+++|+.+..  +         ..++.++..+ .+.++.++..++++|..+..
T Consensus        76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---------~~~~~L~~~l-~d~~~~vr~~a~~aL~~~~~  136 (201)
T 3ltj_A           76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---------RAVEPLIKAL-KDEDWFVRIAAAFALGEIGD  136 (201)
T ss_dssp             -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G---------GGHHHHHHHT-TCSSHHHHHHHHHHHHHHTC
T ss_pred             -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H---------HHHHHHHHHH-cCCCHHHHHHHHHHHHHhCC
Confidence                   468999999999999999999999999852  2         2567788888 67788999999999999853


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                                ...++.|..++.++++.++..++.+|+.+..  +         ..++.|..++.++++.++..|..+|..
T Consensus       137 ----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~  195 (201)
T 3ltj_A          137 ----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETGTGFARKVAVNYLET  195 (201)
T ss_dssp             ----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence                      4578889999999999999999999999852  1         246788888888999999999999988


Q ss_pred             hh
Q 043116          266 IV  267 (482)
Q Consensus       266 l~  267 (482)
                      +.
T Consensus       196 l~  197 (201)
T 3ltj_A          196 HK  197 (201)
T ss_dssp             CC
T ss_pred             HH
Confidence            74

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.39  E-value=1.9e-10  Score=115.78  Aligned_cols=331  Identities=14%  Similarity=0.118  Sum_probs=231.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      ..+..++++.+++...+..+...+..++... +   +.++-  +++.+.+-+++++ +.++..|+++++++..  ++...
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~---e~~~L--~iN~l~kDl~~~n-~~ir~lALr~L~~i~~--~e~~~  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-S---ELIRL--INNAIKNDLASRN-PTFMGLALHCIANVGS--REMAE  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-H---HHHHH--HHHHHHHHHHSCC-HHHHHHHHHHHHHHCC--HHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-c---HHHHH--HHHHHHHhcCCCC-HHHHHHHHHHhhccCC--HHHHH
Confidence            4567778888889999988888888887653 2   21211  3567778888898 9999999999999954  55443


Q ss_pred             HHHhCCChHHHHHhh--CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhc
Q 043116          108 VAIDHGAVPIFVKLL--ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR  185 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~  185 (482)
                           .+++.+.+++  .+.++.+|..|+.++.++....|..   +...+.++.+..++ .+.++.++..|+.++..++.
T Consensus       146 -----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~~~~~~l~~lL-~d~d~~V~~~a~~~l~~i~~  216 (621)
T 2vgl_A          146 -----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMGDWTSRVVHLL-NDQHLGVVTAATSLITTLAQ  216 (621)
T ss_dssp             -----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCCSCHHHHHHHT-TCSCHHHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCchhHHHHHHHHh-CCCCccHHHHHHHHHHHHHH
Confidence                 3568888999  8899999999999999998655542   22236788888888 77888999999999999998


Q ss_pred             CCCCCChhhhhhHHHHHHHHhccC-------------ChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhh---
Q 043116          186 GKPQPPFNQIRPALRVLAQLIRSN-------------DEKVLTDACRALAYLADGT-NDKIQAVIEAGVCPRLVKLL---  248 (482)
Q Consensus       186 ~~~~~~~~~~~~~~~~L~~ll~~~-------------~~~~~~~~l~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll---  248 (482)
                      ..+..-......+++.|..++..+             ++-.+...+..+..++... ++....+.+  ++..++..+   
T Consensus       217 ~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~  294 (621)
T 2vgl_A          217 KNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEP  294 (621)
T ss_dssp             HCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSC
T ss_pred             hChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccC
Confidence            653211111223334444444322             5778999999999988643 333333332  344444332   


Q ss_pred             ------CCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116          249 ------GHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV  320 (482)
Q Consensus       249 ------~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  320 (482)
                            ++.+  ..+..+|+.++..+.. .++...     ..+..|..++.++ ++.+|..+...|..++...+.  ...
T Consensus       295 ~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~-~~niry~aL~~l~~l~~~~~~--~~~  365 (621)
T 2vgl_A          295 PKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHR-ETNLRYLALESMCTLASSEFS--HEA  365 (621)
T ss_dssp             CSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCS-CHHHHHHHHHHHHHHTTCTTT--HHH
T ss_pred             cccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCC-CcchHHHHHHHHHHHHhccCc--HHH
Confidence                  1122  3788888888888753 333222     3566788889887 899999999999999875432  112


Q ss_pred             HHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 043116          321 IDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       321 ~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~  396 (482)
                      +. ...+.++..+. ++|..++..++..+..++.   +.+...     ++..|...+.+.+.+++..++..+..+..
T Consensus       366 ~~-~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~---~~Nv~~-----Iv~eL~~yl~~~d~~~~~~~v~~I~~la~  433 (621)
T 2vgl_A          366 VK-THIETVINALKTERDVSVRQRAVDLLYAMCD---RSNAQQ-----IVAEMLSYLETADYSIREEIVLKVAILAE  433 (621)
T ss_dssp             HH-TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC---HHHHHH-----HHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC---hhhHHH-----HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            32 46778888888 8999999999999999974   344444     45556666666777777777777776654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.30  E-value=1.4e-08  Score=102.24  Aligned_cols=333  Identities=13%  Similarity=0.060  Sum_probs=225.1

Q ss_pred             HHHHHHHhcC---CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh
Q 043116           29 LPTMVAGVWS---DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN  105 (482)
Q Consensus        29 i~~l~~~l~s---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~  105 (482)
                      +..+-+.+++   .++..+..++.-+..+-..+ .+.      ..+....++++++++ ...+..+.-++..++..+++.
T Consensus        37 ~~~ir~~~~~~~~~~~~~k~~~l~Kli~l~~~G-~d~------s~~~~~vvkl~~s~~-~~~Krl~YL~l~~~~~~~~e~  108 (621)
T 2vgl_A           37 LANIRSKFKGDKALDGYSKKKYVCKLLFIFLLG-HDI------DFGHMEAVNLLSSNR-YTEKQIGYLFISVLVNSNSEL  108 (621)
T ss_dssp             HHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHS-CCC------CSCHHHHHHGGGCSC-HHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHcC-CCC------chhHHHHHHHhcCCC-HHHHHHHHHHHHHHccCCcHH
Confidence            4445555553   35666666655444433322 221      236777889999999 899999999999998876654


Q ss_pred             HHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc-chhhhhHHHHHHHHHHHhh
Q 043116          106 TKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN-EHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       106 ~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~-~~~~~~~~~~a~~~L~~L~  184 (482)
                      ...     +++.+.+-+.++++.++..|+++++++.  .++..+     .+++.+.+.+. .+.++.+++.|+.++..+.
T Consensus       109 ~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~  176 (621)
T 2vgl_A          109 IRL-----INNAIKNDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLY  176 (621)
T ss_dssp             HHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            322     3577888888999999999999999995  233222     24667777763 4678899999999999999


Q ss_pred             cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC-------------
Q 043116          185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR-------------  251 (482)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-------------  251 (482)
                      ...|....  ..+.++.+..++.+.++.++..++.++..++..++......+ ..++..|..++..+             
T Consensus       177 ~~~p~~~~--~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~~~~  253 (621)
T 2vgl_A          177 RTSPDLVP--MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSV-SLAVSRLSRIVTSASTDLQDYTYYFVP  253 (621)
T ss_dssp             HHCGGGCC--CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHH-HHHHHHHHHHHHCCSSSCSTTEETTEE
T ss_pred             HhChhhcC--chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHhCCCCCccchhhcCCC
Confidence            86542221  137888999999999999999999999999876553211111 12233333443221             


Q ss_pred             ChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCC--------ch--hHHHHHHHHHHHHhcCCHHHHHHH
Q 043116          252 SRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNH--------NK--SIKKEVCWIISNITAGNREQIQAV  320 (482)
Q Consensus       252 ~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~--------~~--~v~~~a~~~L~nl~~~~~~~~~~l  320 (482)
                      ++-.+...+..++.++... +.....+.+  .++.++..+....        +.  .|..+++.++..+. ..++...  
T Consensus       254 ~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~--  328 (621)
T 2vgl_A          254 APWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD-SEPNLLV--  328 (621)
T ss_dssp             SHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC-CCHHHHH--
T ss_pred             CchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC-CcHHHHH--
Confidence            5678888999999888643 343333332  3444443332111        22  68888888888875 3344332  


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHH
Q 043116          321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~  396 (482)
                         .++..|..++.+.++++|..++.+|..++......  .. + ......++..+. ++|+.++..+++.|..+..
T Consensus       329 ---~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~--~~-~-~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~  398 (621)
T 2vgl_A          329 ---RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH--EA-V-KTHIETVINALKTERDVSVRQRAVDLLYAMCD  398 (621)
T ss_dssp             ---HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH--HH-H-HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH--HH-H-HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcC
Confidence               25667888888889999999999999998753211  11 2 246778888888 8999999999999888863

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.20  E-value=7.3e-09  Score=82.33  Aligned_cols=218  Identities=15%  Similarity=0.131  Sum_probs=177.5

Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC
Q 043116          110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ  189 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~  189 (482)
                      .+..++..++.+|.+.-..++.+|+..+.+++...++..+-     .+..|+.++..+...+..+....++..++...  
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~--  101 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEK--  101 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHC--
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhC--
Confidence            34457889999999988999999999999999888876544     35578888877777888888888999888764  


Q ss_pred             CChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 043116          190 PPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG  269 (482)
Q Consensus       190 ~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  269 (482)
                        .....+++|.+..-..-.++.++....++|..++..++....     +++.-+..++++++..-+..|+..++.+...
T Consensus       102 --Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          102 --PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             --HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             --HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence              355678888888888889999999999999999988776544     4567889999999988899999999988776


Q ss_pred             ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 043116          270 DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVIS  349 (482)
Q Consensus       270 ~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~  349 (482)
                      ......     -.+|.|..+|.+. +.-||..|+.+|.+++..++..+..      +..-++-+++.+..++..+..+|+
T Consensus       175 ~~~yv~-----PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~S~lv~~~V~egL~  242 (253)
T 2db0_A          175 SFKYVN-----PFLPRIINLLHDG-DEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDTSSLVNKTVKEGIS  242 (253)
T ss_dssp             THHHHG-----GGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHH
T ss_pred             CccccC-----cchHHHHHHHcCc-chhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHH
Confidence            555433     4789999999999 9999999999999999988874432      223345556778889999999998


Q ss_pred             Hhhc
Q 043116          350 NATS  353 (482)
Q Consensus       350 ~l~~  353 (482)
                      .++.
T Consensus       243 rl~l  246 (253)
T 2db0_A          243 RLLL  246 (253)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8865

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=2.9e-09  Score=108.60  Aligned_cols=218  Identities=16%  Similarity=0.110  Sum_probs=157.2

Q ss_pred             HhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHH-HhhCCCCHHHHHHHHHHHHHhhCC-C
Q 043116           67 IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV-KLLASPSDDVREQAVWALGNVAGD-S  144 (482)
Q Consensus        67 ~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~-~ll~~~~~~~~~~a~~~L~~l~~~-~  144 (482)
                      .+..++| +++.|++++ ++.|..|+++|++++. ++..+..+...|++..++ .++.+++.++|..|+++|.||+.+ .
T Consensus        32 ~~~~i~P-ll~~L~S~~-~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           32 REDKILP-VLKDLKSPD-AKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             HHHTTHH-HHHHHSSSC-CSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSC
T ss_pred             chhhHHH-HHHHcCCCC-HHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcC
Confidence            3445555 557789999 8999999999999997 789999999999887765 578899999999999999999943 4


Q ss_pred             hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116          145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL  224 (482)
Q Consensus       145 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l  224 (482)
                      +.....+...|++++|...+....         ..+....... ..........+           .++...++.+|.++
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~---------~~~~~~~~~~-~~~~~~~~~~~-----------~~~~~~~l~lL~~L  167 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVL---------ETLTTSEPPF-SKLLKAQQRLV-----------WDITGSLLVLIGLL  167 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHH---------HHHHCBTTBG-GGSCHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred             chHHHHHHHcChHHHHHHHHHhhH---------HHHhhhcccc-ccccHHHHHHH-----------HHHHHHHHHHHHHH
Confidence            667788889999999999983211         1111111110 00000001111           12445677788888


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhcCChhhHHHHHhcCch---HHHHHHhcCCCchhH
Q 043116          225 ADGTNDKIQAVIEAGVCPRLVKLLGHR---SRLVLTAALRTIGNIVTGDDFQTQCIINCGAL---RYLLGLLIHNHNKSI  298 (482)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i---~~L~~ll~~~~~~~v  298 (482)
                      +..+++....+...+.++.++..|.+.   ..+++..|+.+|.+++.+++...+.+.+.+..   ..+..+..+.  ...
T Consensus       168 ~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~--~~~  245 (684)
T 4gmo_A          168 ALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGT--DPR  245 (684)
T ss_dssp             HHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSS--CTT
T ss_pred             HhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCC--cHH
Confidence            887777777788888899999888442   35799999999999999999888888877643   3333333333  346


Q ss_pred             HHHHHHHHHHHh
Q 043116          299 KKEVCWIISNIT  310 (482)
Q Consensus       299 ~~~a~~~L~nl~  310 (482)
                      +..+++++.|+.
T Consensus       246 ~~la~giL~Ni~  257 (684)
T 4gmo_A          246 AVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhHh
Confidence            788999999985

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.09  E-value=1.3e-08  Score=93.39  Aligned_cols=276  Identities=12%  Similarity=0.054  Sum_probs=165.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      .+.++++++++|..++......+..++... .+..      =+.+.|.+=+++++ +-+|-.|+++|+++..  ++..+ 
T Consensus        70 f~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl~~~N-~~iR~lALRtL~~I~~--~~m~~-  138 (355)
T 3tjz_B           70 FFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDMTGKE-DSYRGPAVRALCQITD--STMLQ-  138 (355)
T ss_dssp             HHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHHHSSC-HHHHHHHHHHHHHHCC--TTTHH-
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhcCCCc-HhHHHHHHHHHhcCCC--HHHHH-
Confidence            455677888999999999988888888763 3322      14677888899999 9999999999999976  44333 


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                          .+.+.+.+.+.+.++.+|..|+.+..++....|+..     .+++..+-.++ .+.++.++..|+.++..+...+ 
T Consensus       139 ----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v-----~~~~~~l~~ll-~d~n~~V~~~Al~lL~ei~~~d-  207 (355)
T 3tjz_B          139 ----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV-----KRWVNEAQEAA-SSDNIMVQYHALGLLYHVRKND-  207 (355)
T ss_dssp             ----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTC-
T ss_pred             ----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH-----HHHHHHHHHHh-cCCCccHHHHHHHHHHHHHhhc-
Confidence                245778889999999999999999999997776642     25788888888 6778888889999999998753 


Q ss_pred             CCChhhhhhHHHHHHHHhccC---ChhHHHHHHHHHHHhccCC-cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHh
Q 043116          189 QPPFNQIRPALRVLAQLIRSN---DEKVLTDACRALAYLADGT-NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~---~~~~~~~~l~~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~  264 (482)
                             ...+..++.-+...   ++-.+...++.+..+...+ +.     ....+++.+..+|++.++.|..+|++++.
T Consensus       208 -------~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~-----~~~~~~~~l~~~L~~~~~aVvyEa~k~I~  275 (355)
T 3tjz_B          208 -------RLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGS-----RDSPLFDFIESCLRNKHEMVVYEAASAIV  275 (355)
T ss_dssp             -------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHT
T ss_pred             -------hHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchh-----hHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence                   22445555555432   4656666667666666543 21     22356788888999999999999999999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      .+.......    . ..++..+..++.++ ++.+|..|...|..+....|..++.     .-..+.+++.++|..+...|
T Consensus       276 ~l~~~~~~~----~-~~a~~~L~~fLss~-d~niryvaLr~L~~l~~~~P~~v~~-----~n~~ie~li~d~n~sI~t~A  344 (355)
T 3tjz_B          276 NLPGCSAKE----L-APAVSVLQLFCSSP-KAALRYAAVRTLNKVAMKHPSAVTA-----CNLDLENLVTDANRSIATLA  344 (355)
T ss_dssp             C----------------CCCTHHHHHHSS-SSSSHHHHHHCC--------------------------------------
T ss_pred             hccCCCHHH----H-HHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHCcHHHHH-----HHHHHHHHccCCcHhHHHHH
Confidence            886522221    1 23456677788888 8999999999999998876665432     33455667777877776655


Q ss_pred             HHHHH
Q 043116          345 AWVIS  349 (482)
Q Consensus       345 ~~aL~  349 (482)
                      +.+|.
T Consensus       345 ittll  349 (355)
T 3tjz_B          345 ITTLL  349 (355)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            55543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.05  E-value=1.9e-08  Score=83.76  Aligned_cols=226  Identities=18%  Similarity=0.167  Sum_probs=171.1

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      .+.+..+.++++..|+.++..++.+|..+...-+.......-..+++.++.++.+.++.+...|++||..+..+.+-...
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~  111 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK  111 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence            56788899999999999999999999999976544444444457889999999999999999999999999987653333


Q ss_pred             HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      .+.  .+...+..++.++ ++-.+.+|+..++-+--.++.       .+++..+..++.+.+.+++..++.++.+++...
T Consensus       112 ~y~--Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~-------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          112 TFL--KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDS-------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHH--HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCC-------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHH--HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccch-------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            222  3567889999987 999999999999988332211       136667778889999999999999999998754


Q ss_pred             CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhh-cCCC
Q 043116          356 THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQ-SHDN  434 (482)
Q Consensus       356 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~-~~~~  434 (482)
                      ....    .-.+++.-+-++++++|+.+++.++.++..++...-..         |..-..   .+......++. -...
T Consensus       182 ~D~~----i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~---------~~~~~~---~~~~~~v~~l~~~~~~  245 (265)
T 3b2a_A          182 ADSG----HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLE---------NVKIEL---LKISRIVDGLVYREGA  245 (265)
T ss_dssp             SSCC----CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCS---------CCHHHH---HHHHHHHHHGGGCSSC
T ss_pred             CCHH----HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccH---------hHHHHH---HHHHHHHHHHHHhcCC
Confidence            2111    12347777888999999999999999999998763221         111111   24456677777 5677


Q ss_pred             HHHHHHHHHHHHH
Q 043116          435 NDIHEMSVKILET  447 (482)
Q Consensus       435 ~~v~~~a~~~l~~  447 (482)
                      |.++.+|-.+-+.
T Consensus       246 ~~~~~ka~~v~~~  258 (265)
T 3b2a_A          246 PIIRLKAKKVSDL  258 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHH
Confidence            8888888776554

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.02  E-value=7.1e-08  Score=98.41  Aligned_cols=273  Identities=15%  Similarity=0.106  Sum_probs=191.7

Q ss_pred             cHHHHHHHhc---CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-------ChHHHHHHHHHHHH
Q 043116           28 ILPTMVAGVW---SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-------YPQLQFEAARALTN   97 (482)
Q Consensus        28 ~i~~l~~~l~---s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-------~~~v~~~a~~~L~~   97 (482)
                      ++..|-+.+.   ++++.++..|+..|.-+..+...    .     .+..|...+.+++       .+.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~----~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR----D-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH----H-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH----H-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4666666665   56788898999999888776421    1     3566666665443       25688889999998


Q ss_pred             HhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHH
Q 043116           98 IASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTAT  177 (482)
Q Consensus        98 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~  177 (482)
                      +..++...       .+++.|..++.+.+..+++.|..+|+.+..+.... +      ++..++..+..+.+..+++.++
T Consensus       464 a~~GS~~e-------ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~-~------ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSANI-------EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKP-E------AIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCCH-------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCH-H------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCCH-------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCH-H------HHHHHHHHHhccCcHHHHHHHH
Confidence            76543211       24677888888777778888999999875333221 1      3456666665666778999999


Q ss_pred             HHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhc--cCCcHHHHHHHHhCcHHHHHHh-hCCCCh
Q 043116          178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLA--DGTNDKIQAVIEAGVCPRLVKL-LGHRSR  253 (482)
Q Consensus       178 ~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~--~~~~~~~~~~~~~~~l~~L~~l-l~~~~~  253 (482)
                      ..|..+....        ...++.++..|. +.++-++..++.+++.-.  .++...         ++.|+.. ..+.+.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~a---------Iq~LL~~~~~d~~d  592 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSA---------VKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHH---------HHHHHHHHHHCSCH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHH---------HHHHHHHhccCCcH
Confidence            9999887665        344556666655 567888888877776433  334322         3434443 456778


Q ss_pred             hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH
Q 043116          254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL  333 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll  333 (482)
                      .+|..|+..|+.+..++++         .++.++.++.+..++.+|..|+++++.++.+++..       .+++.|..+.
T Consensus       593 ~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~-------~aid~L~~L~  656 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ-------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH-------HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH-------HHHHHHHHHc
Confidence            8999999999998876653         35566665554449999999999999999865431       2566777788


Q ss_pred             hcCChhHHHHHHHHHHHhhcCCC
Q 043116          334 QDAEFGTKKEAAWVISNATSGGT  356 (482)
Q Consensus       334 ~~~~~~~~~~a~~aL~~l~~~~~  356 (482)
                      .+.+..|+..|+.+|+.+....+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtn  679 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQT  679 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCC
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCc
Confidence            89999999999999999987543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.96  E-value=4.7e-07  Score=72.12  Aligned_cols=214  Identities=12%  Similarity=0.179  Sum_probs=165.4

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhH
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQT  274 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~  274 (482)
                      ..++..++.+|.+.-+.++.+++..+..++...++....+     +..|+.++ ++..-.......+++|.++...|+..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v  105 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELV  105 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHH
Confidence            5788889999999889999999999999998887766543     34555555 45566677888999999998888766


Q ss_pred             HHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          275 QCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      +     +.+|.+..-+.-+ ++++|....++|..++..+|....     +++..+..++.+++..-+..|+..+..+..+
T Consensus       106 ~-----~vVp~lfanyrig-d~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen  174 (253)
T 2db0_A          106 K-----SMIPVLFANYRIG-DEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGEN  174 (253)
T ss_dssp             H-----HHHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT
T ss_pred             H-----hhHHHHHHHHhcC-CccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhcc
Confidence            6     5678888888889 999999999999999998888554     4566788889999988888888888887765


Q ss_pred             CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC
Q 043116          355 GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN  434 (482)
Q Consensus       355 ~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  434 (482)
                      + ...     -.-.++.|..++.+.|.-|+..+.+.|.++....+..            +..+     .+++.+ +++.+
T Consensus       175 ~-~~y-----v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npkl------------Rkii-----~~kl~e-~~D~S  230 (253)
T 2db0_A          175 S-FKY-----VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKL------------RKVV-----IKRLEE-LNDTS  230 (253)
T ss_dssp             T-HHH-----HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHH------------HHHH-----HHHHHH-CCCSC
T ss_pred             C-ccc-----cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHH------------HHHH-----HHHHHH-hcCcH
Confidence            2 332     2237999999999999999999999999999765552            3333     333443 45667


Q ss_pred             HHHHHHHHHHHHHhc
Q 043116          435 NDIHEMSVKILETYW  449 (482)
Q Consensus       435 ~~v~~~a~~~l~~~~  449 (482)
                      ..++.....-+.++.
T Consensus       231 ~lv~~~V~egL~rl~  245 (253)
T 2db0_A          231 SLVNKTVKEGISRLL  245 (253)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777666665543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.95  E-value=4.6e-09  Score=107.12  Aligned_cols=196  Identities=14%  Similarity=0.048  Sum_probs=149.0

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHH-HHhhCCCChhhHHHHHHHHhHhhcC-ChhhHH
Q 043116          198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRL-VKLLGHRSRLVLTAALRTIGNIVTG-DDFQTQ  275 (482)
Q Consensus       198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L-~~ll~~~~~~v~~~a~~~L~~l~~~-~~~~~~  275 (482)
                      ++| +++.|++++++.+..++++|++++. ++...+.+...+++..+ ..+|.+++.+|+..|+++|+||+.. .++.+.
T Consensus        36 i~P-ll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           36 ILP-VLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             THH-HHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHH-HHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence            444 5567899999999999999999996 55566677777887765 5678999999999999999999975 467778


Q ss_pred             HHHhcCchHHHHHHhcCCC-------------c-------hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc
Q 043116          276 CIINCGALRYLLGLLIHNH-------------N-------KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD  335 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~-------------~-------~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~  335 (482)
                      .+++.|+++.|..+++...             .       ..+...++.+|.+++.++.+....+...+.++.|+..+.+
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~  193 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS  193 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence            8999999999999885420             0       1234457788999988888888888888999999998864


Q ss_pred             C---ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCCh---HHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          336 A---EFGTKKEAAWVISNATSGGTHEQIKHLVREGCV---KPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       336 ~---~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      .   ..+++..|+.+|..++.. +++....+.+.+..   ..+..+.++.+ ..+..+...|.+++..
T Consensus       194 ~~~~~~~v~~~a~~~L~~ls~d-n~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          194 ADIAPQDIYEEAISCLTTLSED-NLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVFTS  259 (684)
T ss_dssp             HCCSCHHHHHHHHHHHHHHHTT-CHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHHhcc-CHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHhhh
Confidence            2   467999999999999985 67777777776643   23333333333 3455677888888653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.90  E-value=1e-07  Score=79.43  Aligned_cols=208  Identities=15%  Similarity=0.135  Sum_probs=161.8

Q ss_pred             hhhhhhhcccchhchhhhhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCCh
Q 043116            6 LQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYP   85 (482)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~   85 (482)
                      +..+...|.--+..+......+.+..|+.+++.+|+.++..++.+|.++.... +...+...-..+++.++.++.+.+ .
T Consensus        12 lre~L~sWkiK~a~ela~~~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~d-E   89 (265)
T 3b2a_A           12 LRELVLSWQILDAVSLALEDKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQEN-E   89 (265)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTT-H
T ss_pred             HHHHHHHhhHHHHHHHHHhchhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccc-h
Confidence            34444555544444555555567899999999999999999999999999875 333444555568999999999999 8


Q ss_pred             HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc
Q 043116           86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN  165 (482)
Q Consensus        86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~  165 (482)
                      .+...|++||..+..+.|-..+.+..  ++.+|..++.++++-++..++..++.+---.+ .+.      ++..+.+++ 
T Consensus        90 kval~A~r~L~~LLe~vpL~~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~-~~~------V~~~l~sLl-  159 (265)
T 3b2a_A           90 KVTIKALRALGYLVKDVPMGSKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLED-SKL------VRTYINELV-  159 (265)
T ss_dssp             HHHHHHHHHHHHHHTTCCBCHHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-CHH------HHHHHHHHH-
T ss_pred             hHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-hHH------HHHHHHHHH-
Confidence            99999999999999866544444443  56889999999999999999999999942221 111      355778888 


Q ss_pred             chhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 043116          166 EHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG  227 (482)
Q Consensus       166 ~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~  227 (482)
                      .+.+..++..+..++.+++....  +......++.-+..+++++|+.++..++.++-.+...
T Consensus       160 ~Skd~~vK~agl~~L~eia~~S~--D~~i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          160 VSPDLYTKVAGFCLFLNMLNSSA--DSGHLTLILDEIPSLLQNDNEFIVELALDVLEKALSF  219 (265)
T ss_dssp             TCSSHHHHHHHHHHHHHHGGGCS--SCCCGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             hCCChhHHHHHHHHHHHhhcccC--CHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence            88999999999999999998752  2334456666778899999999999999999998865

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.88  E-value=8.5e-08  Score=87.97  Aligned_cols=315  Identities=10%  Similarity=0.093  Sum_probs=177.4

Q ss_pred             cHHHHHHHhcCC--CHHHHHHH-HHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH
Q 043116           28 ILPTMVAGVWSD--DNKVQLEA-TTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE  104 (482)
Q Consensus        28 ~i~~l~~~l~s~--~~~~~~~a-~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~  104 (482)
                      .++. .+.++..  ++.-...+ .+.|.-+..++ .-...+  ...++..+++++++++ ..++.-.--.+.+++...++
T Consensus        27 v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~-~f~~~e--~t~lf~~v~kl~~s~d-~~lKrLvYLyl~~~~~~~~e  101 (355)
T 3tjz_B           27 VLQE-ARVFNETPINPRKCAHILTKILYLINQGE-HLGTTE--ATEAFFAMTKLFQSND-PTLRRMCYLTIKEMSCIAED  101 (355)
T ss_dssp             HHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTC-CCCHHH--HHHHHHHHHGGGGCCC-HHHHHHHHHHHHHHTTTSSC
T ss_pred             HHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCC-CCchhH--HHHHHHHHHHHhcCCC-HHHHHHHHHHHHHhCCCHHH
Confidence            4444 3455533  44433333 34444455443 211111  1235667789999999 89999888888888774222


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      .   +   =+++.|.+=++++++-+|-.|+++++++...  +.-+.     +.+.+-+.+ .+.++.+++.|+.+...|.
T Consensus       102 ~---i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~~lk~~L-~d~~pyVRk~A~l~~~kL~  167 (355)
T 3tjz_B          102 V---I---IVTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IERYMKQAI-VDKVPSVSSSALVSSLHLL  167 (355)
T ss_dssp             G---G---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHHHHHHHH-TCSSHHHHHHHHHHHHHHT
T ss_pred             H---H---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHHHHHHHc-CCCCHHHHHHHHHHHHHHh
Confidence            1   1   2468888889999999999999999999633  22222     344555566 7788999999999999998


Q ss_pred             cCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHH
Q 043116          185 RGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR---SRLVLTAALR  261 (482)
Q Consensus       185 ~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~  261 (482)
                      ...|    ....+.++.+.+++.+.++.++.+++.++..+...+...         +..++..+...   ++-.+...++
T Consensus       168 ~~~p----e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a---------~~kLv~~l~~~~l~~~~~q~~llr  234 (355)
T 3tjz_B          168 KCSF----DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLA---------VSKMISKFTRHGLKSPFAYCMMIR  234 (355)
T ss_dssp             TTCH----HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHH---------HHHHHHHHHSSCCSCHHHHHHHHH
T ss_pred             ccCH----HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHH---------HHHHHHHHhcCCCcChHHHHHHHH
Confidence            7653    344678888999999999999999999999998765322         23344444332   4555555666


Q ss_pred             HHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhH
Q 043116          262 TIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGT  340 (482)
Q Consensus       262 ~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  340 (482)
                      .+..++..+ +..     ...+++.+..+|++. ++.|..+|+.++..+......    .. ..++..+..++.+.++.+
T Consensus       235 ~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~ni  303 (355)
T 3tjz_B          235 VASRQLEDEDGSR-----DSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAAL  303 (355)
T ss_dssp             HHTCC----------------------CCCCCS-SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSS
T ss_pred             HHHHhccccchhh-----HHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchH
Confidence            666665544 222     235677888889988 999999999999998542222    11 235666777788899999


Q ss_pred             HHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHH
Q 043116          341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL  391 (482)
Q Consensus       341 ~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L  391 (482)
                      |-.|+..|..++.. .|....     .+-..+.++++++|..+...|+..|
T Consensus       304 ryvaLr~L~~l~~~-~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          304 RYAAVRTLNKVAMK-HPSAVT-----ACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             HHHHHHCC-------------------------------------------
T ss_pred             HHHHHHHHHHHHHH-CcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHh
Confidence            99999999998874 343322     2566788899999988877665443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.85  E-value=1.3e-06  Score=89.25  Aligned_cols=270  Identities=15%  Similarity=0.144  Sum_probs=184.6

Q ss_pred             CHHHHHHhhc---CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC--------HHHHHHHHHHHHH
Q 043116           71 VVPRFVEFLM---REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS--------DDVREQAVWALGN  139 (482)
Q Consensus        71 ~~~~L~~ll~---~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~~~~~a~~~L~~  139 (482)
                      ++..|-..|.   +++ +.++..|+..|+-+..+...        .++..|...+.+.+        +.++..|+..|+-
T Consensus       393 gl~~L~~yL~~~~s~~-~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          393 GKKVMAPYLPGSRASS-RFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHHHHTTTSTTSCCSC-HHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCc-HHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4556666665   445 78999999999999775432        14566777776544        6788889999998


Q ss_pred             hhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh-ccCChhHHHHHH
Q 043116          140 VAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI-RSNDEKVLTDAC  218 (482)
Q Consensus       140 l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll-~~~~~~~~~~~l  218 (482)
                      +..+...  +.     ++..|...+. +.+..+...++.+|..+..+.  ..    ..++..|++.+ .+.+..++..+.
T Consensus       464 a~~GS~~--ee-----v~e~L~~~L~-dd~~~~~~~AalALGli~vGT--gn----~~ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          464 AAMGSAN--IE-----VYEALKEVLY-NDSATSGEAAALGMGLCMLGT--GK----PEAIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HSTTCCC--HH-----HHHHHHHHHH-TCCHHHHHHHHHHHHHHHTTC--CC----HHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HhcCCCC--HH-----HHHHHHHHHh-cCCHHHHHHHHHHHhhhhccc--CC----HHHHHHHHHHHhccCcHHHHHHHH
Confidence            7644321  11     3556777773 333345556777777665442  11    23445555543 456788999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchh
Q 043116          219 RALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKS  297 (482)
Q Consensus       219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~  297 (482)
                      .+|+.+..+.++..         +.++..| .+.++.+|..++.+++--..+....       ..++.|+..+.+..+..
T Consensus       530 lgLGll~~g~~e~~---------~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGRQELA---------DDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTCGGGG---------HHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCChHHH---------HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcHH
Confidence            99998887666543         4555555 3577888988888887544433322       13555666655444788


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHH-hcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116          298 IKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLL-QDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL  376 (482)
Q Consensus       298 v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll-~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  376 (482)
                      +|..|+.+|+.+..+.++         .++.++..+ ++.++.+|..++.||+.+.......        .+++.|..+.
T Consensus       594 VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~--------~aid~L~~L~  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ--------SAIDVLDPLT  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH--------HHHHHHHHHH
T ss_pred             HHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH--------HHHHHHHHHc
Confidence            999999999999876653         455566544 5789999999999999997642211        1577788888


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q 043116          377 PCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       377 ~~~~~~v~~~~l~~L~~l~~  396 (482)
                      ++++..|+..|+.+|..+..
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHST
T ss_pred             cCCCHHHHHHHHHHHHHHhc
Confidence            99999999999999998874

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.80  E-value=9.2e-08  Score=84.41  Aligned_cols=184  Identities=16%  Similarity=0.243  Sum_probs=141.7

Q ss_pred             HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcHHHHHHHH
Q 043116          159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYLADGTNDKIQAVIE  237 (482)
Q Consensus       159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~  237 (482)
                      .+...+ .+.+...+..++..|..+....+.........+++.+...+. +.+..++..++.++..++..-...... .-
T Consensus        19 ~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~~   96 (242)
T 2qk2_A           19 DFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-YA   96 (242)
T ss_dssp             THHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-HH
T ss_pred             HHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-HH
Confidence            466666 677888899999999999876332222234678999999995 899999999999999999542222211 22


Q ss_pred             hCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHH
Q 043116          238 AGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQ  316 (482)
Q Consensus       238 ~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~  316 (482)
                      ..+++.++..+.++++.+|..+..+|..++....-  .     .+++.+...+++. ++.+|..++..|..+... .++.
T Consensus        97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~--~-----~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~~~  168 (242)
T 2qk2_A           97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL--E-----AQQESIVESLSNK-NPSVKSETALFIARALTRTQPTA  168 (242)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH--H-----HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCGGG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH--H-----HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCCCC
Confidence            35789999999999999999999999999874331  1     3677889999988 999999999999997653 3331


Q ss_pred             -HHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          317 -IQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       317 -~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                       ....+. .+++.+..++.+.++++|..|..+++.+..
T Consensus       169 ~~~~~l~-~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          169 LNKKLLK-LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CCHHHHH-HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHH-HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence             222333 489999999999999999999999999976

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.76  E-value=5.1e-06  Score=77.98  Aligned_cols=321  Identities=13%  Similarity=0.125  Sum_probs=194.2

Q ss_pred             CChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCCh---hhHHHHHHhCCh-HHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          113 GAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSS---RCRDFVLSQGAL-IPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       113 g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~i-~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      .+...++++|. ..+.++....+..+.-+...++   .....+.+..-. ..+.......++.-....++.++..++...
T Consensus        77 ~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~~  156 (480)
T 1ho8_A           77 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG  156 (480)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred             hHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhccC
Confidence            46788888887 5678888888888888887666   333343333222 223333323333334445555555555433


Q ss_pred             CCCChhhhhhHHH--HHHHHhccC-ChhHHHHHHHHHHHhccCCcHHHHHHHHh--CcHHHHHHhhC----C--------
Q 043116          188 PQPPFNQIRPALR--VLAQLIRSN-DEKVLTDACRALAYLADGTNDKIQAVIEA--GVCPRLVKLLG----H--------  250 (482)
Q Consensus       188 ~~~~~~~~~~~~~--~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~~~~~~~~~--~~l~~L~~ll~----~--------  250 (482)
                      +. .......++.  -++..+... +.+.+..++.+|..+...+. .+..+.+.  ..++.++.+++    +        
T Consensus       157 ~~-~~~~l~~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~-~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~  234 (480)
T 1ho8_A          157 LH-NVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPE-YRDVIWLHEKKFMPTLFKILQRATDSQLATRIVA  234 (480)
T ss_dssp             TC-CHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHH-HHHHHHTTHHHHHHHHHHHHHHHHC---------
T ss_pred             Cc-cHhHHHHHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchh-HHHHHHHcccchhHHHHHHHHHhhcccccccccc
Confidence            22 3333344444  344555542 34556678888888886543 44445543  24555544332    1        


Q ss_pred             ---C--ChhhHHHHHHHHhHhhcCChhhHHHHHhcCch--HHHHHHhcCCCchhHHHHHHHHHHHHhcCCH----HHHHH
Q 043116          251 ---R--SRLVLTAALRTIGNIVTGDDFQTQCIINCGAL--RYLLGLLIHNHNKSIKKEVCWIISNITAGNR----EQIQA  319 (482)
Q Consensus       251 ---~--~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i--~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~----~~~~~  319 (482)
                         +  ...++..++.|++-++. ++.....+...++.  +.|+.+++.....++-+-+..++.|+....+    .....
T Consensus       235 ~~~~~~~~Ql~Y~~ll~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~  313 (480)
T 1ho8_A          235 TNSNHLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQ  313 (480)
T ss_dssp             ----CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHH
T ss_pred             ccCCCccHHHHHHHHHHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHH
Confidence               1  24568889999999887 45556666666644  6677888877688899999999999998542    22332


Q ss_pred             HH-HcCChHHHHHHHhc---CChhHHHHHHHHHHHhhc---------------------CC----CHHH----HHHHHHc
Q 043116          320 VI-DAGLIGPIVNLLQD---AEFGTKKEAAWVISNATS---------------------GG----THEQ----IKHLVRE  366 (482)
Q Consensus       320 l~-~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~~---------------------~~----~~~~----~~~l~~~  366 (482)
                      ++ ..++ +.+++.|..   .|+++....-.....+-.                     .+    ++.+    ...+.++
T Consensus       314 ~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~  392 (480)
T 1ho8_A          314 LLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKD  392 (480)
T ss_dssp             HHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSG
T ss_pred             HHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhc
Confidence            33 3333 556666663   466554433222221111                     00    1111    1112211


Q ss_pred             --CChHHHHhcCCC----------CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC
Q 043116          367 --GCVKPLCDLLPC----------PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN  434 (482)
Q Consensus       367 --~~l~~L~~ll~~----------~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~  434 (482)
                        .++..|.+++++          .|+.+...|+.=++.+++..+.            .+..+.+.|+-+++-+|+.|+|
T Consensus       393 ~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~------------gr~i~~~lg~K~~VM~Lm~h~d  460 (480)
T 1ho8_A          393 NYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPE------------SIDVLDKTGGKADIMELLNHSD  460 (480)
T ss_dssp             GGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTT------------HHHHHHHHSHHHHHHHHTSCSS
T ss_pred             chHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcc------------hhHHHHHcCcHHHHHHHhcCCC
Confidence              246777777763          3566777778888888876555            3778889999999999999999


Q ss_pred             HHHHHHHHHHHHHhc
Q 043116          435 NDIHEMSVKILETYW  449 (482)
Q Consensus       435 ~~v~~~a~~~l~~~~  449 (482)
                      ++|+..|...++++.
T Consensus       461 ~~Vr~~AL~avQklm  475 (480)
T 1ho8_A          461 SRVKYEALKATQAII  475 (480)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.73  E-value=1.4e-07  Score=83.27  Aligned_cols=187  Identities=8%  Similarity=0.067  Sum_probs=138.8

Q ss_pred             HHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116          242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKEVCWIISNITAGNREQIQAV  320 (482)
Q Consensus       242 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  320 (482)
                      +.+...+.+.++..|..++..|..++.+.+.....-. ..+++.+...+. +. +..++..|+.+++.++..-...+...
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3477788899999999999999999875332110001 145777888885 77 99999999999999996322222333


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          321 IDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       321 ~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      .. .+++.++..+.+.+..+|..+..+|..++...+.+        .+++.+...++++++.++..++..|..++.....
T Consensus        96 ~~-~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~--------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 AS-ACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLE--------AQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HH-HHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHH--------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             HH-HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            32 48999999999999999999999999998764422        2577888999999999999999999998765321


Q ss_pred             ccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          401 EKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       401 ~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      ...         +...+  ...++.|..++.+.+++|+..|...+..+..
T Consensus       167 ~~~---------~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          167 TAL---------NKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GGC---------CHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCc---------cHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            110         12222  1347888999999999999999998877553

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.65  E-value=6.2e-07  Score=79.01  Aligned_cols=191  Identities=10%  Similarity=0.086  Sum_probs=139.7

Q ss_pred             HHHHcchhhhhHHHHHHHHHHH-hhcCCCCCC--hhhhhhHHHHHHHHh-ccCChhHHHHHHHHHHHhccCCc-HHHHHH
Q 043116          161 LAELNEHAKLSMLRTATWTLSN-FCRGKPQPP--FNQIRPALRVLAQLI-RSNDEKVLTDACRALAYLADGTN-DKIQAV  235 (482)
Q Consensus       161 ~~~l~~~~~~~~~~~a~~~L~~-L~~~~~~~~--~~~~~~~~~~L~~ll-~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~  235 (482)
                      ...+ .+.+..-+..++..|.. ++.+.+...  ......++..+...+ .+.+..++..++.+++.++.+-. .....-
T Consensus        22 ~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           22 QERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            3444 56677888889999999 876543322  223357788999999 78899999999999999985322 111101


Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH-
Q 043116          236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR-  314 (482)
Q Consensus       236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~-  314 (482)
                      +...+++.++..+.+..+.++..+..++..++...+.....-.-..+++.+...+++. ++.+|..++.+|..++...+ 
T Consensus       101 y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k-~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          101 YVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK-TPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence            1123688999999999999999999999888874421110000013677899999999 99999999999999987333 


Q ss_pred             --HHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          315 --EQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       315 --~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                        ......+...++|.+..++.+.++++|..|..+++.+..
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence              444445534799999999999999999999999998864

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.64  E-value=2.5e-07  Score=81.57  Aligned_cols=190  Identities=12%  Similarity=0.184  Sum_probs=138.4

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHH-HhCCChHhHHHHHh-CCChHHHHHhh-CCCCHHHHHHHHHHHHHhhCCC--hhhH-
Q 043116           75 FVEFLMREDYPQLQFEAARALTN-IASGTSENTKVAID-HGAVPIFVKLL-ASPSDDVREQAVWALGNVAGDS--SRCR-  148 (482)
Q Consensus        75 L~~ll~~~~~~~v~~~a~~~L~~-l~~~~~~~~~~~~~-~g~i~~L~~ll-~~~~~~~~~~a~~~L~~l~~~~--~~~~-  148 (482)
                      +.+.+++.+ ..-|..|+..|.. ++.+.++....-.+ ..++..|.+.+ .+.+..++..|+.+++.++.+-  +... 
T Consensus        21 f~~~l~s~~-w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSK-WKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSS-HHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCC-HHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            566778888 6889999999999 87543332100000 13467778888 6889999999999999998422  1222 


Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCCh-hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPF-NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG  227 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~  227 (482)
                      .....  +++.++..+ .+....++..+..++..++...+.... .....+++.+...+++.++.++..++.+|..+...
T Consensus       100 ~y~~~--llp~ll~~l-~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~  176 (249)
T 2qk1_A          100 DYVSL--VFTPLLDRT-KEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE  176 (249)
T ss_dssp             HHHHH--HHHHHHHGG-GCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH
Confidence            22222  577888888 555677888888889888875422221 12568999999999999999999999999998855


Q ss_pred             Cc---HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          228 TN---DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       228 ~~---~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ..   ......+...+++.+..++.+.++.+|..|..+++.++.
T Consensus       177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            44   233233325789999999999999999999999999875

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.63  E-value=3.8e-05  Score=72.15  Aligned_cols=325  Identities=11%  Similarity=0.074  Sum_probs=195.9

Q ss_pred             hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh---HhHHHHHhCCCh-HHHHH-hhCCCCHHHHHHHHHHHHHhhC
Q 043116           68 QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS---ENTKVAIDHGAV-PIFVK-LLASPSDDVREQAVWALGNVAG  142 (482)
Q Consensus        68 ~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~~~~~g~i-~~L~~-ll~~~~~~~~~~a~~~L~~l~~  142 (482)
                      +...+..++++|+.....++....+..+..+...++   .....+.+..-. ..+.. ++..++.-....+..++..++.
T Consensus        75 ~~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           75 NGKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             SSTTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             CchHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            345678899999876668999999999999988776   444444444322 22333 3444444445556656555543


Q ss_pred             CChhhHHHHHHhCChH--HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh--hhHHHHHHHHhcc----------
Q 043116          143 DSSRCRDFVLSQGALI--PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI--RPALRVLAQLIRS----------  208 (482)
Q Consensus       143 ~~~~~~~~~~~~~~i~--~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~ll~~----------  208 (482)
                      ..+...+.+.  ..+.  -++..+.+..+.+.+..++.+|..|.+....+.....  ...+|.++.+++.          
T Consensus       155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            3322111111  1122  3455553322234455688888888876533332221  2346666544331          


Q ss_pred             -----C--ChhHHHHHHHHHHHhccCCcHHHHHHHHhCcH--HHHHHhhCC-CChhhHHHHHHHHhHhhcCCh----hhH
Q 043116          209 -----N--DEKVLTDACRALAYLADGTNDKIQAVIEAGVC--PRLVKLLGH-RSRLVLTAALRTIGNIVTGDD----FQT  274 (482)
Q Consensus       209 -----~--~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~----~~~  274 (482)
                           +  ..+++..++.|+.-++-. ++..+.+...++.  ..++..++. ..+++.+-++.++.|+....+    ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHH
Confidence                 1  245688899999988854 3455555555543  456666644 568899999999999998652    222


Q ss_pred             H-HHHhcCchHHHHHHhcCCC--chhHHHHHHHHHHHHhc-----C----------------CHHHH-HHHHH-------
Q 043116          275 Q-CIINCGALRYLLGLLIHNH--NKSIKKEVCWIISNITA-----G----------------NREQI-QAVID-------  322 (482)
Q Consensus       275 ~-~l~~~~~i~~L~~ll~~~~--~~~v~~~a~~~L~nl~~-----~----------------~~~~~-~~l~~-------  322 (482)
                      . .++..++ ..+++.|....  |+++....-+..-.+-.     .                +|-+. ..++.       
T Consensus       312 ~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~  390 (480)
T 1ho8_A          312 KQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  390 (480)
T ss_dssp             HHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHH
Confidence            2 2333445 44555554421  55555443332222211     0                11111 12221       


Q ss_pred             ---cCChHHHHHHHhc----------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHH
Q 043116          323 ---AGLIGPIVNLLQD----------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI  389 (482)
Q Consensus       323 ---~~~i~~L~~ll~~----------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~  389 (482)
                         ..++..|++++.+          .|+.+..-||.=|+.++.. .|.....+.+.|+=+.+++++.++|++|+..|+.
T Consensus       391 e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~-~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~  469 (480)
T 1ho8_A          391 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVEL-LPESIDVLDKTGGKADIMELLNHSDSRVKYEALK  469 (480)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHH-CTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHH
T ss_pred             hcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHH-CcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHH
Confidence               1247889999973          3677888899999999986 5566677777799999999999999999999999


Q ss_pred             HHHHHHHh
Q 043116          390 GLENILKV  397 (482)
Q Consensus       390 ~L~~l~~~  397 (482)
                      ++.+++..
T Consensus       470 avQklm~~  477 (480)
T 1ho8_A          470 ATQAIIGY  477 (480)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99998853

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.53  E-value=6.2e-05  Score=80.23  Aligned_cols=336  Identities=11%  Similarity=0.061  Sum_probs=185.9

Q ss_pred             HHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhC-----CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHH
Q 043116           86 QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLA-----SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPL  160 (482)
Q Consensus        86 ~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l  160 (482)
                      .++..++.++..++...++.-...+. .+++..+..+.     ..++.++..++..+..++... ..+..+...+.++.+
T Consensus       261 ~vk~~~~~~l~~l~~~~~~~f~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~l  338 (960)
T 1wa5_C          261 KVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNNI  338 (960)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHHH
Confidence            46778888888887644433222222 34555555553     346788889999999887432 222111100122223


Q ss_pred             H-----HHHcc---h-------------------hhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc------
Q 043116          161 L-----AELNE---H-------------------AKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR------  207 (482)
Q Consensus       161 ~-----~~l~~---~-------------------~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~------  207 (482)
                      +     ..+.-   +                   .....+..+..+|..++...+   ......+++.+.+.+.      
T Consensus       339 i~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~---~~v~~~~l~~i~~~l~~~~~~~  415 (960)
T 1wa5_C          339 TEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE---VLVTNIFLAHMKGFVDQYMSDP  415 (960)
T ss_dssp             HHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc---hhHHHHHHHHHHHHHHHhccCc
Confidence            3     22210   0                   011345566777777776532   2334455566666665      


Q ss_pred             cCChhHHHHHHHHHHHhccCCc--H----------HHHHHHHhCcHHHHHHhhCCC---ChhhHHHHHHHHhHhhcCChh
Q 043116          208 SNDEKVLTDACRALAYLADGTN--D----------KIQAVIEAGVCPRLVKLLGHR---SRLVLTAALRTIGNIVTGDDF  272 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~--~----------~~~~~~~~~~l~~L~~ll~~~---~~~v~~~a~~~L~~l~~~~~~  272 (482)
                      ++++..++.++.+++.++....  .          ....++    ...+++.+.++   ++.+|..|+++++.++..-..
T Consensus       416 ~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~  491 (960)
T 1wa5_C          416 SKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK  491 (960)
T ss_dssp             --CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH
T ss_pred             chhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH
Confidence            5678899999999999975311  0          111111    12344445566   788999999999999874321


Q ss_pred             hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-C----------HHHHHHHHHcCChHHHHHHHhcCC----
Q 043116          273 QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-N----------REQIQAVIDAGLIGPIVNLLQDAE----  337 (482)
Q Consensus       273 ~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~----------~~~~~~l~~~~~i~~L~~ll~~~~----  337 (482)
                        . . -..+++.++..+.++ ++.|+..|++++.+++.. .          .+.+...+. .+++.|+.++....    
T Consensus       492 --~-~-l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~-~ll~~L~~ll~~~~~~~~  565 (960)
T 1wa5_C          492 --A-Q-LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE-ILLKNLIALILKHGSSPE  565 (960)
T ss_dssp             --H-H-HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH-HHHHHHHHHHHTTCCCHH
T ss_pred             --H-H-HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHH-HHHHHHHHHHHhccCCCC
Confidence              1 1 124678888888887 899999999999999863 1          222222222 35666777776541    


Q ss_pred             -hhHHHHHHHHHHHhhcCCCHH---HHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH
Q 043116          338 -FGTKKEAAWVISNATSGGTHE---QIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ  412 (482)
Q Consensus       338 -~~~~~~a~~aL~~l~~~~~~~---~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~  412 (482)
                       ......+..++..++......   ....+.. ..+..+....+ .+++.....+++++..++.....          +.
T Consensus       566 ~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~-~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~----------~~  634 (960)
T 1wa5_C          566 KLAENEFLMRSIFRVLQTSEDSIQPLFPQLLA-QFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQR----------QN  634 (960)
T ss_dssp             HHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHH-HHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCG----------GG
T ss_pred             cccccHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCc----------ch
Confidence             112345566665554321111   1122111 12222333333 34667777889999999876111          11


Q ss_pred             HHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          413 YAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       413 ~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      +. .+ ....++.+..++.....+....+..++..+.
T Consensus       635 ~~-~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          635 LP-LL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HH-HH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HH-HH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            11 12 2234677777766665666666666665554

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.52  E-value=1.7e-05  Score=82.16  Aligned_cols=301  Identities=12%  Similarity=0.127  Sum_probs=210.4

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCCh---H
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTS---E  104 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~---~  104 (482)
                      .+..+++.+...+..-...++..+..+........   .+..+++..+.+.+.+.. ..  +.|+.++..++....   .
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~k~-~~--~~a~~~~~~~~~~~~~~~~   88 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGNIIEH---DVPEHFFGELAKGIKDKK-TA--ANAMQAVAHIANQSNLSPS   88 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSSCSSS---SCCHHHHHHHHHHHTSHH-HH--HHHHHHHHHHTCTTTCCTT
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhcccccc---ccchhHHHHHHHHHhccC-CH--HHHHHHHHHHHHhcCCCCC
Confidence            34456666765445555677888888876531111   112357788888888776 33  899999999995331   2


Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCC-ChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGD-SSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      .--.++  +.++.++..+.+....+|..|..++..+... ++...     ..++|.++..+.....-+.+..++.++..|
T Consensus        89 ~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~  161 (986)
T 2iw3_A           89 VEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAFSAM  161 (986)
T ss_dssp             THHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence            223333  5789999999888899999888888777733 33332     225888999995444667788899999999


Q ss_pred             hcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          184 CRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      +...+.........++|.+...+.+..+++...+..++..+|..-. ..+     ..+++.|++.+.+++.  ...++..
T Consensus       162 ~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~-----~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          162 VDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI-----ERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             HHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT-----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             HHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch-----hhhHHHHHHHhcChhh--hHHHHHH
Confidence            9865433334457899999999999999999999999988874211 111     2578999999988854  4455666


Q ss_pred             HhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc--CCHHHHHHHHHcCChHHHHHHHh-cCChh
Q 043116          263 IGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA--GNREQIQAVIDAGLIGPIVNLLQ-DAEFG  339 (482)
Q Consensus       263 L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~--~~~~~~~~l~~~~~i~~L~~ll~-~~~~~  339 (482)
                      |+.-..-..-....+  +=++|.|..-|... ...+++.++-++.|+|.  .+|.....++. ..+|.+-.... -.+|+
T Consensus       235 l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~-~l~p~~~~~~~~~~~pe  310 (986)
T 2iw3_A          235 LGATTFVAEVTPATL--SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCKLVEDPQVIAPFLG-KLLPGLKSNFATIADPE  310 (986)
T ss_dssp             HTTCCCCSCCCHHHH--HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTCCCHHHHHHHHT-TTHHHHHHHTTTCCSHH
T ss_pred             hhcCeeEeeecchhH--HHHHHHHHhhhccC-cchhheeeEEEEcchhhhcCCHHHHhhhhh-hhhhHHHHHhhccCCHH
Confidence            654433111111111  12567888888877 88899999999999998  77887777775 58888888776 46899


Q ss_pred             HHHHHHHHHHHhh
Q 043116          340 TKKEAAWVISNAT  352 (482)
Q Consensus       340 ~~~~a~~aL~~l~  352 (482)
                      +|..+..|+..+.
T Consensus       311 ~r~~~~~a~~~l~  323 (986)
T 2iw3_A          311 AREVTLRALKTLR  323 (986)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999988888884

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.50  E-value=2.1e-08  Score=79.17  Aligned_cols=121  Identities=17%  Similarity=0.181  Sum_probs=92.2

Q ss_pred             hhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHH
Q 043116          196 RPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       196 ~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      ...++.+..+|+++++.++..++++|+.+...            .++.|+..+.++++.+|..|+++|+++..  +    
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~----   72 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E----   72 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H----
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H----
Confidence            45677888999999999999999998876531            14788899999999999999999999863  1    


Q ss_pred             HHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          276 CIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                           ..++.|+..++++ ++.||..|+++|+++.  ++.         .++.|..+++++++.++..|+.+|..+
T Consensus        73 -----~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~--~~~---------a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 -----RAVEPLIKLLEDD-SGFVRSGAARSLEQIG--GER---------VRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             -----HHHHHHHHHHHHC-CTHHHHHHHHHHHHHC--SHH---------HHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             -----HHHHHHHHHHcCC-CHHHHHHHHHHHHHhC--cHH---------HHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                 2477888889888 9999999999999985  222         577888888889999999999998653

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.48  E-value=3.3e-05  Score=82.54  Aligned_cols=393  Identities=11%  Similarity=0.058  Sum_probs=204.8

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHh-------hcCCCC--hHHHHHHHHHHHHHhCCChHhH---
Q 043116           39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEF-------LMREDY--PQLQFEAARALTNIASGTSENT---  106 (482)
Q Consensus        39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~l-------l~~~~~--~~v~~~a~~~L~~l~~~~~~~~---  106 (482)
                      +++..+..|+.+|..+............+. .+++.++.+       +..++.  .+.....++.+..++.......   
T Consensus       256 ~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~  334 (971)
T 2x1g_F          256 DENELAESCLKTMVNIIIQPDCHNYPKTAF-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSG  334 (971)
T ss_dssp             HHHHHHHHHHHHHHHHHHCSGGGGCHHHHH-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCccccccHHHHH-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457788889999999987531111111121 123333332       233331  2666667777777764222211   


Q ss_pred             ---------HHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCC---------ChhhHHHHHH--hCChHHHH
Q 043116          107 ---------KVAIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGD---------SSRCRDFVLS--QGALIPLL  161 (482)
Q Consensus       107 ---------~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~---------~~~~~~~~~~--~~~i~~l~  161 (482)
                               ..+.  .+++.++.+...     .++++...+++.+..++..         .+.....+..  ...++.++
T Consensus       335 ~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~  412 (971)
T 2x1g_F          335 ITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILV  412 (971)
T ss_dssp             HHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHH
T ss_pred             hccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHH
Confidence                     1111  345566665532     4677888899888877531         1111111111  12344455


Q ss_pred             HHHcchhh--------------hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhcc-----CChhHHHHHHHHHH
Q 043116          162 AELNEHAK--------------LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRS-----NDEKVLTDACRALA  222 (482)
Q Consensus       162 ~~l~~~~~--------------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~-----~~~~~~~~~l~~L~  222 (482)
                      ..+...++              ...+..+..++..++...+   ......+++.+...+.+     .++..++.++.+++
T Consensus       413 ~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~  489 (971)
T 2x1g_F          413 RKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN---DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQ  489 (971)
T ss_dssp             HHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT---THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH
Confidence            55421111              1344556667777765432   33344555555555544     67889999999999


Q ss_pred             HhccCCcHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHH
Q 043116          223 YLADGTNDKIQAVIEAGVCPRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKK  300 (482)
Q Consensus       223 ~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~  300 (482)
                      .+++.........+. .+++.+ ..+.  ++++.++..++++++.++..-....+.+  ..+++.++..+.    +.++.
T Consensus       490 ~iae~~~~~~~~~l~-~l~~~l-~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~vl~~l~~~l~----~~v~~  561 (971)
T 2x1g_F          490 SVAEHFGGEEKRQIP-RLMRVL-AEIPYEKLNVKLLGTALETMGSYCNWLMENPAYI--PPAINLLVRGLN----SSMSA  561 (971)
T ss_dssp             HTTTC------CHHH-HHHHHH-HHSCTTTSCHHHHHHHHHHHHHTHHHHC----CH--HHHHHHHHHHHH----SSCHH
T ss_pred             HHHhhcChhhhHHHH-HHHHHH-HhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHHHHHHHHHhC----hHHHH
Confidence            999765432211111 133322 2223  3478899999999999885322111111  135566666662    57999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCC-HHHHHHHHH--cCChHHHHhc
Q 043116          301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGT-HEQIKHLVR--EGCVKPLCDL  375 (482)
Q Consensus       301 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~-~~~~~~l~~--~~~l~~L~~l  375 (482)
                      .|++++.+++......+...++ .++..+..++..  -+...+..+..+++.++.... .+...++..  .-.+..+.+.
T Consensus       562 ~A~~al~~l~~~~~~~l~p~~~-~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~  640 (971)
T 2x1g_F          562 QATLGLKELCRDCQLQLKPYAD-PLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAI  640 (971)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhccccHH-HHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999755554544443 477777788876  357888999999999876422 222222222  1123333333


Q ss_pred             CCCC--CHHH---HHHHHHHHHHHHHhchhccccCCCC--cccHHHHHHHHhchHHHHHHhhc--CCCHHHHHHHHHHHH
Q 043116          376 LPCP--DPQI---VTVCLIGLENILKVGEAEKNTDNIG--DVNQYAQLVEEAEGLEKIENLQS--HDNNDIHEMSVKILE  446 (482)
Q Consensus       376 l~~~--~~~v---~~~~l~~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l~~--~~~~~v~~~a~~~l~  446 (482)
                      ++.+  +++.   ...++..|..++..-..........  ..+++...+  ...++.+..+..  ..++++.+.+..++.
T Consensus       641 ~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l~~~l~~~~~~~~v~e~~~~~~~  718 (971)
T 2x1g_F          641 CQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIFKRIAEMWVEEIDVLEAACSAMK  718 (971)
T ss_dssp             HTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            3333  3322   2334555555554322110000000  011122222  244666666643  246788888888887


Q ss_pred             Hh
Q 043116          447 TY  448 (482)
Q Consensus       447 ~~  448 (482)
                      +.
T Consensus       719 ~~  720 (971)
T 2x1g_F          719 HA  720 (971)
T ss_dssp             HH
T ss_pred             HH
Confidence            73

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.47  E-value=6.6e-08  Score=76.25  Aligned_cols=122  Identities=18%  Similarity=0.197  Sum_probs=93.5

Q ss_pred             hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhh
Q 043116           68 QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRC  147 (482)
Q Consensus        68 ~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  147 (482)
                      ....++.+..+|++++ +.+|..|+++|+.+..            ..++.|+.++.++++.+|..|+++|+++..  +. 
T Consensus        10 ~~~~~~~l~~~L~~~~-~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~~-   73 (131)
T 1te4_A           10 HSSGLVPRGSHMADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--ER-   73 (131)
T ss_dssp             -----------CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--HH-
T ss_pred             ccccHHHHHHHhcCCC-HHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--HH-
Confidence            3456888999999988 8999999999987743            126899999999999999999999999852  11 


Q ss_pred             HHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116          148 RDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL  224 (482)
Q Consensus       148 ~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l  224 (482)
                              .++.|+..+ ++.+..++..++++|..+..          ...++.|..+++++++.++..++.+|..+
T Consensus        74 --------a~~~L~~~L-~d~~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           74 --------AVEPLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --------HHHHHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --------HHHHHHHHH-cCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                    377888888 67888999999999998852          46789999999999999999999998753

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=98.46  E-value=0.00021  Score=76.17  Aligned_cols=343  Identities=11%  Similarity=0.051  Sum_probs=194.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC------h
Q 043116           30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT------S  103 (482)
Q Consensus        30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~------~  103 (482)
                      ..+++.+.++++.++.....++..++..+-..     --.++++.|++.+++++ +..+..++.++..++...      +
T Consensus        88 ~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-----~Wp~ll~~L~~~l~s~~-~~~~~~aL~~l~~i~~~~~~~~~~~  161 (960)
T 1wa5_C           88 KEIVPLMISLPNNLQVQIGEAISSIADSDFPD-----RWPTLLSDLASRLSNDD-MVTNKGVLTVAHSIFKRWRPLFRSD  161 (960)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-----TCTTHHHHHHTTCCSSC-TTHHHHHHHHHHHHHGGGTTSCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-----chhHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            34556655556888888888888888753111     01457999999998887 788899999999998732      1


Q ss_pred             HhHHHH---HhCCChHHHHH-------hhCCCCH---------HHHHHHHHHHHHhhC-CChhh-HHHHHHhCChHHHHH
Q 043116          104 ENTKVA---IDHGAVPIFVK-------LLASPSD---------DVREQAVWALGNVAG-DSSRC-RDFVLSQGALIPLLA  162 (482)
Q Consensus       104 ~~~~~~---~~~g~i~~L~~-------ll~~~~~---------~~~~~a~~~L~~l~~-~~~~~-~~~~~~~~~i~~l~~  162 (482)
                      +.+..+   +. ...+.++.       .+.....         ++...++.+++.+.. +.+.. .+.+.  ..++.+.+
T Consensus       162 ~~~~~l~~~l~-~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~--~~~~~~~~  238 (960)
T 1wa5_C          162 ELFLEIKLVLD-VFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQ--VGMGIFHK  238 (960)
T ss_dssp             HHHHHHHHHHH-HHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHH--HHHHHHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHH--HHHHHHHH
Confidence            222211   11 12333333       2443321         223346667766652 22221 11111  12344455


Q ss_pred             HHcch-----hh---------hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc-----cCChhHHHHHHHHHHH
Q 043116          163 ELNEH-----AK---------LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR-----SNDEKVLTDACRALAY  223 (482)
Q Consensus       163 ~l~~~-----~~---------~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~-----~~~~~~~~~~l~~L~~  223 (482)
                      .+...     .+         ..++..++.++..+....+..-......+++.+...+.     ..++.++..++..+..
T Consensus       239 ~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~  318 (960)
T 1wa5_C          239 YLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTA  318 (960)
T ss_dssp             HHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHH
T ss_pred             HHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHH
Confidence            55221     11         23556677777777654321111233456666666664     3456788888888888


Q ss_pred             hccCCcHHHHHHHH-hCcHH-----HHHHhhCC-----------------------CChhhHHHHHHHHhHhhcCChhhH
Q 043116          224 LADGTNDKIQAVIE-AGVCP-----RLVKLLGH-----------------------RSRLVLTAALRTIGNIVTGDDFQT  274 (482)
Q Consensus       224 l~~~~~~~~~~~~~-~~~l~-----~L~~ll~~-----------------------~~~~v~~~a~~~L~~l~~~~~~~~  274 (482)
                      ++..... . .++. .+.++     .+++.|.-                       .....|..|..+|..++...+...
T Consensus       319 ~~~~~~~-~-~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v  396 (960)
T 1wa5_C          319 VTRIPKY-F-EIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV  396 (960)
T ss_dssp             HHTSHHH-H-GGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH
T ss_pred             HhCcHhH-H-HHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH
Confidence            7753221 1 1111 11222     23333321                       112467778888888876544221


Q ss_pred             HHHHhcCchHHHHHHhc------CCCchhHHHHHHHHHHHHhcCC--HH----------HHHHHHHcCChHHHHHHHhcC
Q 043116          275 QCIINCGALRYLLGLLI------HNHNKSIKKEVCWIISNITAGN--RE----------QIQAVIDAGLIGPIVNLLQDA  336 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~------~~~~~~v~~~a~~~L~nl~~~~--~~----------~~~~l~~~~~i~~L~~ll~~~  336 (482)
                         .. .+++.+...+.      +. +...|..|..+++.++.+.  ..          ....++...+++    .+.+.
T Consensus       397 ---~~-~~l~~i~~~l~~~~~~~~~-~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p----~l~~~  467 (960)
T 1wa5_C          397 ---TN-IFLAHMKGFVDQYMSDPSK-NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAP----DLTSN  467 (960)
T ss_dssp             ---HH-HHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHH----HHHCS
T ss_pred             ---HH-HHHHHHHHHHHHhccCcch-hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHH----HhcCC
Confidence               11 13444445554      34 6778899999999997521  11          122222222333    33555


Q ss_pred             ---ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          337 ---EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       337 ---~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                         ++.+|..++|+++.++..-.++....     +++.++..+.++++.|+..|..+|.++++.
T Consensus       468 ~~~~p~vr~~a~~~lg~~~~~~~~~~l~~-----~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~  526 (960)
T 1wa5_C          468 NIPHIILRVDAIKYIYTFRNQLTKAQLIE-----LMPILATFLQTDEYVVYTYAAITIEKILTI  526 (960)
T ss_dssp             SCSCHHHHHHHHHHHHHTGGGSCHHHHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHTTC
T ss_pred             CCCCceehHHHHHHHHHHHhhCCHHHHHH-----HHHHHHHHhCCCChhHHHHHHHHHHHHHhc
Confidence               88999999999999987544443222     677888888888899999999999999874

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.37  E-value=1.2e-05  Score=71.67  Aligned_cols=187  Identities=11%  Similarity=0.087  Sum_probs=142.1

Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHH-
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVI-  321 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-  321 (482)
                      .++.-|.+.+.+.+..++.-|..+...+......+++.+++..|+++.... +...+..+..++.+++.+ ...+.-++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~-v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA-DHNYQSYILRALGQLMLF-VDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhc-cccccchhC
Confidence            444555567778889999999996656778888999999999999999999 999999999999999875 34455555 


Q ss_pred             HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHH--------c--CChHHHHhcCC---CCCHHHHHHHH
Q 043116          322 DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVR--------E--GCVKPLCDLLP---CPDPQIVTVCL  388 (482)
Q Consensus       322 ~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~--------~--~~l~~L~~ll~---~~~~~v~~~~l  388 (482)
                      ...++..+..++.+.+..+.+.|+..|..++...+ .....+.+        .  ..+..|+.+++   ..|.++..+++
T Consensus       200 ~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          200 HSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            45578889999998889999999999999987642 12222111        1  24788888887   68889999999


Q ss_pred             HHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCC--CHHHH
Q 043116          389 IGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHD--NNDIH  438 (482)
Q Consensus       389 ~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~--~~~v~  438 (482)
                      ..+..++...+...      ....+...+.+.|.-..+...+...  ++++.
T Consensus       279 tLIN~lL~~apd~d------~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~  324 (339)
T 3dad_A          279 TLINKTLAALPDQD------SFYDVTDALEQQGMEALVQRHLGTAGTDVDLR  324 (339)
T ss_dssp             HHHHHHHHHCSSHH------HHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHH
T ss_pred             HHHHHHHhcCCChh------HHHHHHHHHHHccHHHHHHHHHhccCCCHHHH
Confidence            99999998765432      1234677787778777788877665  45554

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.35  E-value=2e-05  Score=70.25  Aligned_cols=188  Identities=12%  Similarity=0.103  Sum_probs=139.5

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      -+..++.-|.+.+.+.+..++..|..+...+......++..+++..|+.+....+..++..++.++.++..+.......+
T Consensus       119 ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          119 RVNAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchh
Confidence            34456666777888889999999998665666778889999999999999999999999999999999998655543433


Q ss_pred             HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--------c--CChHHHHHHHh---cCChhHHHHH
Q 043116          278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--------A--GLIGPIVNLLQ---DAEFGTKKEA  344 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--------~--~~i~~L~~ll~---~~~~~~~~~a  344 (482)
                      -...++.++..++.+. +..|.+.|...|..++..++.....+.+        .  ..++.|+.+|+   +.+.+++.++
T Consensus       199 s~~~fI~~lyslv~s~-~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCASL-SRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCc-cHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            3567899999999986 8999999999999998755433332222        1  24889999997   6899999999


Q ss_pred             HHHHHHhhcCCC-HH----HHHHHHHcCChHHHHhcCCCC--CHHHHHH
Q 043116          345 AWVISNATSGGT-HE----QIKHLVREGCVKPLCDLLPCP--DPQIVTV  386 (482)
Q Consensus       345 ~~aL~~l~~~~~-~~----~~~~l~~~~~l~~L~~ll~~~--~~~v~~~  386 (482)
                      +..|..+....+ .+    ....+.+.|.-..+...++..  +++++.+
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            998888876544 23    223333445445566656654  5565554

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.31  E-value=0.00037  Score=74.38  Aligned_cols=400  Identities=11%  Similarity=0.067  Sum_probs=206.7

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH----h--cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI----Q--SGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~----~--~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      .++.+++.+  .++..+..|+.++..+............+    .  -+..+.+...+...+ .+.....++++..++..
T Consensus       242 ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d-~~~~~~~~~l~~~~~~~  318 (963)
T 2x19_B          242 LIQAAFAAL--QDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQAVQNGD-METSHGICRIAVALGEN  318 (963)
T ss_dssp             HHHHHHHHT--TSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHHHHTTC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh--CCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
Confidence            345555555  35667788999999998753211111111    1  112222223334445 55556666777766542


Q ss_pred             ChHh-------HHHHHhCCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhCCC--------hhhHHHHHH--hCChHH
Q 043116          102 TSEN-------TKVAIDHGAVPIFVKLLAS-----PSDDVREQAVWALGNVAGDS--------SRCRDFVLS--QGALIP  159 (482)
Q Consensus       102 ~~~~-------~~~~~~~g~i~~L~~ll~~-----~~~~~~~~a~~~L~~l~~~~--------~~~~~~~~~--~~~i~~  159 (482)
                      .+..       ...+.  .+++.++.+...     .++.+...++..+..++...        +.....+..  ..+++.
T Consensus       319 ~~~~l~~~~~~~~~~~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  396 (963)
T 2x19_B          319 HSRALLDQVEHWQSFL--ALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDV  396 (963)
T ss_dssp             HHHHHHHCGGGHHHHH--HHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHcCccchHHHH--HHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            1111       01111  345566665553     34556666666666665310        111111110  012344


Q ss_pred             HHHHHcchhh-----------h---hHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh----ccCChhHHHHHHHHH
Q 043116          160 LLAELNEHAK-----------L---SMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI----RSNDEKVLTDACRAL  221 (482)
Q Consensus       160 l~~~l~~~~~-----------~---~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll----~~~~~~~~~~~l~~L  221 (482)
                      ++..+....+           .   +.+..+..+|..++...+   ......+++.+...+    .+.++..++.+++++
T Consensus       397 ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~~~---~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al  473 (963)
T 2x19_B          397 LLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLG---AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGF  473 (963)
T ss_dssp             HHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHHcc---HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            4444421111           0   123345555555553211   122334455555556    556788999999999


Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhh---CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhH
Q 043116          222 AYLADGTNDKIQAVIEAGVCPRLVKLL---GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSI  298 (482)
Q Consensus       222 ~~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v  298 (482)
                      +.++.......     ...++.++..+   .++++.++..++++++.++..-..... .+ ..+++.++..+.+   +.|
T Consensus       474 ~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~-~l-~~vl~~l~~~l~~---~~V  543 (963)
T 2x19_B          474 QSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPV-MI-NSVLPLVLHALGN---PEL  543 (963)
T ss_dssp             HHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHH-HH-TTTHHHHHHHTTC---GGG
T ss_pred             HHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHH-HH-HHHHHHHHHHhCC---chH
Confidence            99996643211     12233344333   345788999999999999863222222 22 3688888888854   689


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc--CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116          299 KKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD--AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL  376 (482)
Q Consensus       299 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~--~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  376 (482)
                      +..|++++.+++....+.....++ .++..+..++..  -+.+.+..+..+++.++....++......+ .+++.+.+.+
T Consensus       544 ~~~A~~al~~l~~~~~~~l~p~~~-~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~-~l~~~l~~~l  621 (963)
T 2x19_B          544 SVSSVSTLKKICRECKYDLPPYAA-NIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLH-SLISPYIQQL  621 (963)
T ss_dssp             HHHHHHHHHHHHHHTGGGCTTTHH-HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHH-HHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHH
Confidence            999999999999643332222221 345555566664  256788899999999986544233222222 1333333322


Q ss_pred             ----CC-CCHHHHH---HHHHHHHHHHHhchhccccC---CC--------CcccHHHHHHHHhchHHHHHHhh--cCCCH
Q 043116          377 ----PC-PDPQIVT---VCLIGLENILKVGEAEKNTD---NI--------GDVNQYAQLVEEAEGLEKIENLQ--SHDNN  435 (482)
Q Consensus       377 ----~~-~~~~v~~---~~l~~L~~l~~~~~~~~~~~---~~--------~~~~~~~~~l~~~~~~~~l~~l~--~~~~~  435 (482)
                          +. .+++.+.   ..+++|..+++.........   ..        ....++...+  ...++.+..+.  ...+.
T Consensus       622 ~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~  699 (963)
T 2x19_B          622 EKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVL--QQVFQLIQKVLSKWLNDA  699 (963)
T ss_dssp             HHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHH--HHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHH--HHHHHHHHHHHHhccCch
Confidence                22 2444433   45666666665533211000   00        0112233332  22344444443  23467


Q ss_pred             HHHHHHHHHHHHhc
Q 043116          436 DIHEMSVKILETYW  449 (482)
Q Consensus       436 ~v~~~a~~~l~~~~  449 (482)
                      ++.+.+..++..+.
T Consensus       700 ~v~e~~~~~l~~~~  713 (963)
T 2x19_B          700 QVVEAVCAIFEKSV  713 (963)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888888754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=98.30  E-value=0.00036  Score=73.99  Aligned_cols=350  Identities=10%  Similarity=0.106  Sum_probs=189.4

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHH-HhhcCCCChHHHHHHHHHHHHHhCCC---h
Q 043116           29 LPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFV-EFLMREDYPQLQFEAARALTNIASGT---S  103 (482)
Q Consensus        29 i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~-~ll~~~~~~~v~~~a~~~L~~l~~~~---~  103 (482)
                      ++.+.+.+. +.++++...++.++....+.-   ....+++.++++.+. .++.  + ++++..|+.||..+....   +
T Consensus       196 ~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI---~i~~i~~~~ll~~l~~~~L~--~-~~~r~~A~ecL~eIv~~~~~~~  269 (1023)
T 4hat_C          196 FKLCFQVLEQGASSSLIVATLESLLRYLHWI---PYRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQD  269 (1023)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHTSCCCSS
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHhC---CHHHhcchhHHHHHHHHHcC--C-HHHHHHHHHHHHHHHccccCCc
Confidence            344444444 556778888999999888753   367778889999999 8885  4 789999999999998721   2


Q ss_pred             --HhHHHHHhC--CChHHH--------------HHhhCCCCHHHHHHHHHHHHHhh-------CCChhhHHHHHHhCChH
Q 043116          104 --ENTKVAIDH--GAVPIF--------------VKLLASPSDDVREQAVWALGNVA-------GDSSRCRDFVLSQGALI  158 (482)
Q Consensus       104 --~~~~~~~~~--g~i~~L--------------~~ll~~~~~~~~~~a~~~L~~l~-------~~~~~~~~~~~~~~~i~  158 (482)
                        +..+.+...  +.++.+              ...-...+.+....-+..+..+.       ...+..+..+.  .++.
T Consensus       270 ~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~  347 (1023)
T 4hat_C          270 NDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQ  347 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHH
Confidence              122111100  111111              11112234555554555554333       12222222221  1233


Q ss_pred             HHHHHHcchhhhhHHHHHHHHHHHhhcCC--CCCChhhhh----hHHHHHHHHhccCC--------------------hh
Q 043116          159 PLLAELNEHAKLSMLRTATWTLSNFCRGK--PQPPFNQIR----PALRVLAQLIRSND--------------------EK  212 (482)
Q Consensus       159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~--~~~~~~~~~----~~~~~L~~ll~~~~--------------------~~  212 (482)
                      .++..- ..++.++...++.....+...-  .........    .+++.++.-+.-+.                    ++
T Consensus       348 ~Ll~~~-~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~  426 (1023)
T 4hat_C          348 YLIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDT  426 (1023)
T ss_dssp             HHHHHT-TSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGG
T ss_pred             HHHHhh-CCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHH
Confidence            444432 4556777777776666665421  111222333    34444444433221                    00


Q ss_pred             -HHHHHH-HHHHHhccCCc-HHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH
Q 043116          213 -VLTDAC-RALAYLADGTN-DKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL  287 (482)
Q Consensus       213 -~~~~~l-~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~  287 (482)
                       ...... .+|..++.-.. +..+     -+++.+...+..  .++..++.++++++.++.+..+....-.-..+++.|+
T Consensus       427 ~~~f~~~Rd~L~~l~~l~~~~~~~-----~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll  501 (1023)
T 4hat_C          427 IQLYKSEREVLVYLTHLNVIDTEE-----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLL  501 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHH-----HHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHH-----HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHH
Confidence             011011 22222221111 1111     122334444443  5788999999999999976543322122235777888


Q ss_pred             HHhcCC----CchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH
Q 043116          288 GLLIHN----HNKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI  360 (482)
Q Consensus       288 ~ll~~~----~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~  360 (482)
                      .++.+.    ....++..++|+++.++.   ..++...     .++..|++.+.+.++.++..|++++.+++..+.....
T Consensus       502 ~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-----~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~  576 (1023)
T 4hat_C          502 DLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFV  576 (1023)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             HhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-----HHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhh
Confidence            887641    145567788899998876   2333222     2555677777777889999999999999974332211


Q ss_pred             H--------HHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhch
Q 043116          361 K--------HLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGE  399 (482)
Q Consensus       361 ~--------~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~  399 (482)
                      .        ++.  .++..+......-+++-+..+.+++..++...+
T Consensus       577 ~~~~~e~~p~~~--~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~  621 (1023)
T 4hat_C          577 IQQPRESEPFIQ--TIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1023)
T ss_dssp             SCCTTCSSCHHH--HHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred             ccCCCCCchhHH--HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence            0        111  123333444444566666778888888887644

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=98.28  E-value=0.00023  Score=76.07  Aligned_cols=392  Identities=8%  Similarity=0.010  Sum_probs=217.4

Q ss_pred             hhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCC---CCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           25 KFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDR---NSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        25 ~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      ..+..+.+...+. +.++.++..|+..|.+.....-   ++.....+...+++.+.+.- .+. +.++.+.+.++..++.
T Consensus        37 ~p~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~-~~~-~~vr~kl~~~la~i~~  114 (971)
T 2x1g_F           37 SPQAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA-GGP-KIVLNRLCISLGAYIV  114 (971)
T ss_dssp             STHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT-TSC-HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHHH
Confidence            3456667788886 5678999999999999886420   22244455555666666653 334 7899999999999987


Q ss_pred             CChHhHHHHHhCCChHHHHHhhCCC------CHHHHHHHHHHHHHhhCC-----Chh----hHHHHHHhCChHHHHHHH-
Q 043116          101 GTSENTKVAIDHGAVPIFVKLLASP------SDDVREQAVWALGNVAGD-----SSR----CRDFVLSQGALIPLLAEL-  164 (482)
Q Consensus       101 ~~~~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~a~~~L~~l~~~-----~~~----~~~~~~~~~~i~~l~~~l-  164 (482)
                      ....     -..+.++.++..+.++      ++..++.++.+|..++.+     ...    .++.+.  ..++.++.++ 
T Consensus       115 ~~~p-----~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~--~~~~~vl~ll~  187 (971)
T 2x1g_F          115 HMLG-----EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIA--KRVQLVIHTVE  187 (971)
T ss_dssp             HTTC-----C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHH--TTHHHHHHHHH
T ss_pred             Hccc-----cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHH--HHHHHHHHHHH
Confidence            4321     1235778888888764      567788888888887732     101    112221  2344444443 


Q ss_pred             ---cchhhh-------hHHHHHHHHHHHhhc--CCCCCChhhhhhHHHHHHHHhc----------------cCChhHHHH
Q 043116          165 ---NEHAKL-------SMLRTATWTLSNFCR--GKPQPPFNQIRPALRVLAQLIR----------------SNDEKVLTD  216 (482)
Q Consensus       165 ---~~~~~~-------~~~~~a~~~L~~L~~--~~~~~~~~~~~~~~~~L~~ll~----------------~~~~~~~~~  216 (482)
                         ....+.       .+...++.++.....  ..|..   ....+++.+.. +.                .++++++..
T Consensus       188 ~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~---~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (971)
T 2x1g_F          188 RYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE---GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENELAES  263 (971)
T ss_dssp             HHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG---GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHHHHHH
T ss_pred             HHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc---ccccHHHHHHh-hhhhhccccccccccccCcCCcHHHHH
Confidence               222222       577778888876555  22222   44677777776 41                146789999


Q ss_pred             HHHHHHHhccCCcH--HHHHHHHhCcHHHHHH-------hhCCCCh---hhHHHHHHHHhHhhcCChhhHH---------
Q 043116          217 ACRALAYLADGTND--KIQAVIEAGVCPRLVK-------LLGHRSR---LVLTAALRTIGNIVTGDDFQTQ---------  275 (482)
Q Consensus       217 ~l~~L~~l~~~~~~--~~~~~~~~~~l~~L~~-------ll~~~~~---~v~~~a~~~L~~l~~~~~~~~~---------  275 (482)
                      ++.++..+....+.  ....+ . .+++.++.       .+...+.   ......+..+..++........         
T Consensus       264 a~~~l~~i~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~  341 (971)
T 2x1g_F          264 CLKTMVNIIIQPDCHNYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLSGITSADPE  341 (971)
T ss_dssp             HHHHHHHHHHCSGGGGCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHHHHHTCCHH
T ss_pred             HHHHHHHHHcCccccccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhccCccc
Confidence            99999998864331  11111 1 12222222       2234442   6677777777777643322111         


Q ss_pred             --HHHhcCchHHHHHHhcC----CCchhHHHHHHHHHHHHhcC--------C-HH---HHHHHHHcCChHHHHHHHhcCC
Q 043116          276 --CIINCGALRYLLGLLIH----NHNKSIKKEVCWIISNITAG--------N-RE---QIQAVIDAGLIGPIVNLLQDAE  337 (482)
Q Consensus       276 --~l~~~~~i~~L~~ll~~----~~~~~v~~~a~~~L~nl~~~--------~-~~---~~~~l~~~~~i~~L~~ll~~~~  337 (482)
                        ..+ ..+++.++.+..+    ..+.++...+++....++..        . +.   ....++. .+++.++..+..++
T Consensus       342 ~~~~l-~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~ll~~l~~~~~~p~  419 (971)
T 2x1g_F          342 LSILV-HRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYA-HLTRILVRKSEQPD  419 (971)
T ss_dssp             HHHHH-HHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHH-HHHHHHHHHTSCCC
T ss_pred             ccHHH-HHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH-HHHHHHHHHhcCCC
Confidence              001 1355666666544    22677899999988887541        0 11   1112222 34555555443211


Q ss_pred             h---------------hHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCC-----CCCHHHHHHHHHHHHHHHHh
Q 043116          338 F---------------GTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP-----CPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       338 ~---------------~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~-----~~~~~v~~~~l~~L~~l~~~  397 (482)
                      .               ..|..+..++..++..........+     ++.+.+.+.     .+++..++.++.++..+.+.
T Consensus       420 ~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~-----~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~  494 (971)
T 2x1g_F          420 EKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL-----AAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEH  494 (971)
T ss_dssp             TTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH-----HHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC
T ss_pred             cccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-----HHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhh
Confidence            1               3556677777777654332332322     222222222     25778899999999988754


Q ss_pred             chhccccCCCCcccHHHHHHHHhchHHHHHHhhc-CCCHHHHHHHHHHHHHhcCC
Q 043116          398 GEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS-HDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       398 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~-~~~~~v~~~a~~~l~~~~~~  451 (482)
                      .....        ......     .++.+..+.. ++++.|+..+.+++.+|...
T Consensus       495 ~~~~~--------~~~l~~-----l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~  536 (971)
T 2x1g_F          495 FGGEE--------KRQIPR-----LMRVLAEIPYEKLNVKLLGTALETMGSYCNW  536 (971)
T ss_dssp             --------------CHHHH-----HHHHHHHSCTTTSCHHHHHHHHHHHHHTHHH
T ss_pred             cChhh--------hHHHHH-----HHHHHHhcCccccCHHHHHHHHHHHHHHHHH
Confidence            43321        111121     2334555543 35899999999999987643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.21  E-value=0.00044  Score=71.82  Aligned_cols=299  Identities=14%  Similarity=0.150  Sum_probs=199.8

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC---hhhHHHH
Q 043116           75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS---SRCRDFV  151 (482)
Q Consensus        75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~---~~~~~~~  151 (482)
                      +.+-+...+ ..-+..++..+.++........  .+..+++..+.+.+.+....  +.|+.++..+|...   +...-.+
T Consensus        19 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~   93 (986)
T 2iw3_A           19 LFQKLSVAT-ADNRHEIASEVASFLNGNIIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYI   93 (986)
T ss_dssp             HHHHHTTCC-TTTHHHHHHHHHHHHTSSCSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHH
T ss_pred             HHhhccccc-hhHHHHHHHHHHHHHhcccccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccch
Confidence            444455444 3445667777777655321111  11225678888888765444  88999999998433   2233333


Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC-ChhHHHHHHHHHHHhccCCcH
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN-DEKVLTDACRALAYLADGTND  230 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~-~~~~~~~~l~~L~~l~~~~~~  230 (482)
                      +  +.++.++... .+.+..++..|..+...+...-+   ......++|.|...+.+. .+.....++.++..++...++
T Consensus        94 ~--~~~~~~~~~~-~dk~~~v~~aa~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~  167 (986)
T 2iw3_A           94 V--QLVPAICTNA-GNKDKEIQSVASETLISIVNAVN---PVAIKALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKD  167 (986)
T ss_dssp             H--TTHHHHHHHT-TCSSHHHHHHHHHHHHHHHHHSC---GGGHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHH
T ss_pred             H--HHHHHHHHHh-cCCchHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHH
Confidence            3  4788888888 45556788888778777776532   223378899999988755 699999999999999976554


Q ss_pred             HHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC--ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          231 KIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG--DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       231 ~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      +.. ..=..++|.+-..+.+..+++...|..++..++..  |.+.      ...+|.|++.+.++ +.  ..++...|+.
T Consensus       168 ~~~-~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~------~~~~~~~~~~~~~p-~~--~~~~~~~l~~  237 (986)
T 2iw3_A          168 QVA-LRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI------ERFIPSLIQCIADP-TE--VPETVHLLGA  237 (986)
T ss_dssp             HHH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT------GGGHHHHHHHHHCT-TH--HHHHHHHHTT
T ss_pred             HHH-HhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch------hhhHHHHHHHhcCh-hh--hHHHHHHhhc
Confidence            433 22236889999999999999999999999988862  3332      25789999999887 33  2233333333


Q ss_pred             Hhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC-CCHHHHHHHHHcCChHHHHhcCC-CCCHHH
Q 043116          309 ITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG-GTHEQIKHLVREGCVKPLCDLLP-CPDPQI  383 (482)
Q Consensus       309 l~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~-~~~~~~~~l~~~~~l~~L~~ll~-~~~~~v  383 (482)
                      -..   -+.....     =++|.|.+-|......+++.++..+.|++.- .+|.....++ -..++-+....+ ..+|++
T Consensus       238 ~tfv~~v~~~~l~-----~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          238 TTFVAEVTPATLS-----IMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFL-GKLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             CCCCSCCCHHHHH-----HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHH-TTTHHHHHHHTTTCCSHHH
T ss_pred             CeeEeeecchhHH-----HHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhh-hhhhhHHHHHhhccCCHHH
Confidence            222   1122111     1466777777788899999999999999763 3555555533 346777777555 588999


Q ss_pred             HHHHHHHHHHHHHhchh
Q 043116          384 VTVCLIGLENILKVGEA  400 (482)
Q Consensus       384 ~~~~l~~L~~l~~~~~~  400 (482)
                      +..+..++..+.+.+..
T Consensus       312 r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          312 REVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhhcc
Confidence            99999999988776554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.17  E-value=0.0033  Score=67.61  Aligned_cols=356  Identities=9%  Similarity=0.092  Sum_probs=190.0

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcC---CCCC---c-H-----HHHHh--cCCHHHHHHhhcCCCChHHHHHHH
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSF---DRNS---P-I-----EKVIQ--SGVVPRFVEFLMREDYPQLQFEAA   92 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~---~~~~---~-~-----~~~~~--~g~~~~L~~ll~~~~~~~v~~~a~   92 (482)
                      +.++.+++.++ .++.....++.+|..+...   ....   . +     ..+..  ..+++.+...+....+++++..++
T Consensus       138 ~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL  216 (1049)
T 3m1i_C          138 EFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATL  216 (1049)
T ss_dssp             THHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            45778888876 4454455555555555421   1011   0 0     11211  123344455555443378999999


Q ss_pred             HHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCC--hh---hHHHHHHhCChHHHHHHHc-
Q 043116           93 RALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDS--SR---CRDFVLSQGALIPLLAELN-  165 (482)
Q Consensus        93 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~--~~---~~~~~~~~~~i~~l~~~l~-  165 (482)
                      .++.+....-+  ...+.+...++.+.+ ++  .++.++..|+.+|..+....  +.   ....+..  .++.++..+. 
T Consensus       217 ~~l~~~l~wi~--~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~--l~~~~l~~l~~  290 (1049)
T 3m1i_C          217 ESLLRYLHWIP--YRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL--FFQNTLQQIAT  290 (1049)
T ss_dssp             HHHHHHTTTSC--THHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHH--HHHHHHHHHHH
T ss_pred             HHHHHHHhhCC--HHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHH--HHHHHHHHHHH
Confidence            99998766332  233555667777773 44  37899999999999998542  21   1111111  1122222210 


Q ss_pred             ----------------chhhhhHHHHHHHHHHHhhcC------CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116          166 ----------------EHAKLSMLRTATWTLSNFCRG------KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAY  223 (482)
Q Consensus       166 ----------------~~~~~~~~~~a~~~L~~L~~~------~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~  223 (482)
                                      .+.+.+.....+..+..+...      .+.........+++.++.+...++.++...++..+..
T Consensus       291 si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~  370 (1049)
T 3m1i_C          291 SVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHN  370 (1049)
T ss_dssp             HTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             hhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence                            122344444444444333221      0111122335667777777777788888888877777


Q ss_pred             hcc----CCc--HHHHHHHHhCcHHHHHHhhCCCCh----------------------hhHHHHHHHHhHhhcCChhhHH
Q 043116          224 LAD----GTN--DKIQAVIEAGVCPRLVKLLGHRSR----------------------LVLTAALRTIGNIVTGDDFQTQ  275 (482)
Q Consensus       224 l~~----~~~--~~~~~~~~~~~l~~L~~ll~~~~~----------------------~v~~~a~~~L~~l~~~~~~~~~  275 (482)
                      ++.    ...  .....++ ..+++.++..+..++.                      ..+..+..+|..++...+....
T Consensus       371 l~~~l~~~~~~~~~~~~~l-~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~~~~~~~l  449 (1049)
T 3m1i_C          371 LVADLFYEPLKKHIYEEIC-SQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTHLNVIDTE  449 (1049)
T ss_dssp             HHHHHHHSTTCGGGGHHHH-HHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             HHHHHHhchhHHHHHHHHH-HHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            665    111  1111111 1344555555533210                      1233455566555532222111


Q ss_pred             HHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHH-HHHHHcCChHHHHHHHh-----cCChhHHHHHHHHH
Q 043116          276 CIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQI-QAVIDAGLIGPIVNLLQ-----DAEFGTKKEAAWVI  348 (482)
Q Consensus       276 ~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~~~i~~L~~ll~-----~~~~~~~~~a~~aL  348 (482)
                      .    -+.+.+-..+.+ ..+...+..++++++.++.+..... ..++. .+++.+..+..     ++++.++..+++++
T Consensus       450 ~----~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~-~v~~~l~~l~~~~~~~~~~~~v~~~~~~~l  524 (1049)
T 3m1i_C          450 E----IMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLTVKKRGKDNKAVVASDIMYVV  524 (1049)
T ss_dssp             H----HHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHTTSSCSHHHHHHHHHHHHHHH
T ss_pred             H----HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHH-HHHHHHHHHHhhhccccchHHHHHHHHHHH
Confidence            1    123444455543 2367889999999999986432221 12111 24444444332     12344555688888


Q ss_pred             HHhhcC--CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          349 SNATSG--GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       349 ~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +.++..  ..++...     .+++.+++.+.++++.|+..|..++.++++.+..
T Consensus       525 gry~~~~~~~~~~l~-----~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~  573 (1049)
T 3m1i_C          525 GQYPRFLKAHWNFLR-----TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKY  573 (1049)
T ss_dssp             HHCHHHHHHCHHHHH-----HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHhHHHHHH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence            877542  1233222     2677888888888999999999999999986543

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=98.11  E-value=0.00092  Score=71.93  Aligned_cols=352  Identities=9%  Similarity=0.109  Sum_probs=185.4

Q ss_pred             HHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHH-hhcCCCChHHHHHHHHHHHHHhCCC--hH-
Q 043116           30 PTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVE-FLMREDYPQLQFEAARALTNIASGT--SE-  104 (482)
Q Consensus        30 ~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~-ll~~~~~~~v~~~a~~~L~~l~~~~--~~-  104 (482)
                      +.+.+.+. .+++.++..++.++......-  + ...+.+..+++.+.+ ++.  + ++++..|+.||..+....  +. 
T Consensus       197 ~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi--~-~~~~~~~~ll~~l~~~~l~--~-~~~~~~a~~~L~~i~~~~~~~~~  270 (1049)
T 3m1i_C          197 KLCFQVLEQGSSSSLIVATLESLLRYLHWI--P-YRYIYETNILELLSTKFMT--S-PDTRAITLKCLTEVSNLKIPQDN  270 (1049)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHTTTS--C-THHHHSSSHHHHHHTHHHH--S-HHHHHHHHHHHHHHHHCCCCTTC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHhhC--C-HHHHhhhhHHHHHHHHhCC--C-HhHHHHHHHHHHHHHhCCCCcch
Confidence            33444454 456788888999998887653  2 344566777887773 443  5 899999999999998642  21 


Q ss_pred             --hHHHHHh--CCChHHHHH-hh-------------CCCCHHHHHHHHHHHHHhhC-------CChhhHHHHHHhCChHH
Q 043116          105 --NTKVAID--HGAVPIFVK-LL-------------ASPSDDVREQAVWALGNVAG-------DSSRCRDFVLSQGALIP  159 (482)
Q Consensus       105 --~~~~~~~--~g~i~~L~~-ll-------------~~~~~~~~~~a~~~L~~l~~-------~~~~~~~~~~~~~~i~~  159 (482)
                        ....+..  .+++..+.. ++             .+.+.+.....+..+..+..       ..+..+..+.  .+++.
T Consensus       271 ~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~--~~l~~  348 (1049)
T 3m1i_C          271 DLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQY  348 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHH--HHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHH--HHHHH
Confidence              1111110  122222221 11             12234444444444433321       1111122211  23555


Q ss_pred             HHHHHcchhhhhHHHHHHHHHHHhhc----CCCCC--ChhhhhhHHHHHHHHhccCC--------h--------------
Q 043116          160 LLAELNEHAKLSMLRTATWTLSNFCR----GKPQP--PFNQIRPALRVLAQLIRSND--------E--------------  211 (482)
Q Consensus       160 l~~~l~~~~~~~~~~~a~~~L~~L~~----~~~~~--~~~~~~~~~~~L~~ll~~~~--------~--------------  211 (482)
                      ++... ..++.++...++..+..++.    .....  .......+++.++..+.-++        +              
T Consensus       349 ll~~~-~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~  427 (1049)
T 3m1i_C          349 LIQLS-KIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTI  427 (1049)
T ss_dssp             HHHHH-TSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHH
T ss_pred             HHHHH-cCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHH
Confidence            55554 34566777778877777776    32111  11223445555555443210        0              


Q ss_pred             hHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC--CCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHH
Q 043116          212 KVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG--HRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGL  289 (482)
Q Consensus       212 ~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~l  289 (482)
                      ..+..+..+|..++.......-    .-+.+.+-..+.  ..++..+..++++++.++.........-.-..+++.+..+
T Consensus       428 ~~~~~~~~~L~~l~~~~~~~~l----~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l  503 (1049)
T 3m1i_C          428 QLYKSEREVLVYLTHLNVIDTE----EIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL  503 (1049)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHH----HHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHH----HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHH
Confidence            1233344555555532221111    112334444444  3567889999999999986543321111112345555554


Q ss_pred             hcCC----CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHH-----
Q 043116          290 LIHN----HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQI-----  360 (482)
Q Consensus       290 l~~~----~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~-----  360 (482)
                      ....    ..+.++..++|+++.++.--...- .++. .+++.+++.+.++++.++..|++++.+++..+.....     
T Consensus       504 ~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~-~~l~-~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~  581 (1049)
T 3m1i_C          504 TVKKRGKDNKAVVASDIMYVVGQYPRFLKAHW-NFLR-TVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPR  581 (1049)
T ss_dssp             TTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCH-HHHH-HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTT
T ss_pred             HhhhccccchHHHHHHHHHHHHHHHHHHHhHH-HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCC
Confidence            3321    145566679999998875111111 1222 3667777788888899999999999999975332211     


Q ss_pred             ---HHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          361 ---KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       361 ---~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                         .++  ..++..+..++...+.+-.....+++..++...
T Consensus       582 ~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~  620 (1049)
T 3m1i_C          582 ESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIISEE  620 (1049)
T ss_dssp             CSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTC
T ss_pred             CCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcC
Confidence               111  123444444555555555566777777776543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=98.06  E-value=0.00092  Score=71.35  Aligned_cols=338  Identities=12%  Similarity=0.078  Sum_probs=188.1

Q ss_pred             cCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCC
Q 043116           80 MREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGA  156 (482)
Q Consensus        80 ~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  156 (482)
                      .+.+ ...++.++++++.++....+..     ...++.++..+   .++++.++..++|+++.++..-....+.  -..+
T Consensus       459 ~~~~-w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~--l~~v  530 (963)
T 2x19_B          459 EPYS-WQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM--INSV  530 (963)
T ss_dssp             CSCC-HHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHH--HTTT
T ss_pred             CCCc-hHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHH--HHHH
Confidence            3445 5789999999999987543211     12334444433   3357889999999999998421111122  2357


Q ss_pred             hHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCc-HHHH
Q 043116          157 LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTN-DKIQ  233 (482)
Q Consensus       157 i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~-~~~~  233 (482)
                      ++.++..+. +  +.++..|++++.+++......-......+++.+..++...  +.+.+..+..+++.++...+ +...
T Consensus       531 l~~l~~~l~-~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~~~  607 (963)
T 2x19_B          531 LPLVLHALG-N--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEIL  607 (963)
T ss_dssp             HHHHHHHTT-C--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHhC-C--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHHHH
Confidence            888888883 2  7889999999999997543323334567777788887753  56788889999999886443 3322


Q ss_pred             HHHHhCcHHHHHHhh----CC-CChhhHH---HHHHHHhHhhcCCh----------------------hhHHHHHhcCch
Q 043116          234 AVIEAGVCPRLVKLL----GH-RSRLVLT---AALRTIGNIVTGDD----------------------FQTQCIINCGAL  283 (482)
Q Consensus       234 ~~~~~~~l~~L~~ll----~~-~~~~v~~---~a~~~L~~l~~~~~----------------------~~~~~l~~~~~i  283 (482)
                      ..++ .+++.+...+    .. .+++.+.   ..+.+|+.+...-.                      .... -+...++
T Consensus       608 ~~~~-~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  685 (963)
T 2x19_B          608 KNLH-SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVV-VVLQQVF  685 (963)
T ss_dssp             HHHH-HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHH-HHHHHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchH-HHHHHHH
Confidence            2222 3344443333    22 2444433   34444544442110                      0011 1122355


Q ss_pred             HHHHHHhcC-CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHH----Hhc-CChhHHHHHHHHHHHhhc--CC
Q 043116          284 RYLLGLLIH-NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNL----LQD-AEFGTKKEAAWVISNATS--GG  355 (482)
Q Consensus       284 ~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~l----l~~-~~~~~~~~a~~aL~~l~~--~~  355 (482)
                      +.+..++.. ..+..+...++.++..++....+...     .+++.++..    +.. +.+    ..++.+..++.  ..
T Consensus       686 ~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~-----~~l~~~~~~l~~~~~~~~~~----~~l~l~~~li~~f~~  756 (963)
T 2x19_B          686 QLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFA-----PMVPQLCEMLGRMYSTIPQA----SALDLTRQLVHIFAH  756 (963)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTG-----GGHHHHHHHHHHHHHHSCCH----HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHhhccccc-----ccHHHHHHHHHHHHHcCCcc----HHHHHHHHHHHHhCC
Confidence            555555543 22668889999998887642111111     123333333    222 222    23333333332  11


Q ss_pred             CH---HHHHHHHHcCChHHHHhcCC---CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccH-HHHHHHHhchHHHHHH
Q 043116          356 TH---EQIKHLVREGCVKPLCDLLP---CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQ-YAQLVEEAEGLEKIEN  428 (482)
Q Consensus       356 ~~---~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~l~~  428 (482)
                      .+   .....+.+ ..+..+..++.   ..+++++...+..+..++......-..     ... +...      ++.+..
T Consensus       757 ~~~~~~~~~~~l~-~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~-----~~~~~~~i------~~~~~~  824 (963)
T 2x19_B          757 EPAHFPPIEALFL-LVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLC-----ERLDVKAV------FQCAVL  824 (963)
T ss_dssp             CTTTCHHHHHHHH-HHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGC-----TTSCHHHH------HHHHHH
T ss_pred             CcchHHHHHHHHH-HHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcC-----CcccHHHH------HHHHHH
Confidence            11   11111111 12333333322   246899999999999999876654211     111 2222      344444


Q ss_pred             hhcCCCHHHHHHHHHHHHHhcCC
Q 043116          429 LQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       429 l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      ...+++..+.+.+...+..++..
T Consensus       825 ~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          825 ALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HcCCCCHHHHHHHHHHHHHHHhc
Confidence            55688899999999999988764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=97.99  E-value=0.002  Score=68.36  Aligned_cols=388  Identities=6%  Similarity=0.050  Sum_probs=202.3

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhCCChHhHHHHHhCC
Q 043116           39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-----EDYPQLQFEAARALTNIASGTSENTKVAIDHG  113 (482)
Q Consensus        39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  113 (482)
                      .+...+..+++++..++.+. .+....-.-..+++.|+.++.+     +. ..++..++|+++.++.--... ..+++ .
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k-~~v~~t~~~~lGry~~wl~~~-~~~L~-~  540 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNK-AVVASDIMYVVGQYPRFLKAH-WNFLR-T  540 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHH-HHHHHHHHHHHHTCHHHHHHC-HHHHH-H
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcch-HHHHHHHHHHHHHHHHHHhcc-HHHHH-H
Confidence            46788889999999998764 2221222233467788888763     22 345566789999887521111 11221 3


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH------hCChHHHHHHHc---chhhhhHHHHHHHHHHHhh
Q 043116          114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS------QGALIPLLAELN---EHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~  184 (482)
                      +++.|.+.+.++++.++..|++++.++|.   .++..+..      ...++.++..+.   ..-+..-...+..++..+.
T Consensus       541 vl~~L~~~l~~~~~~v~~~A~~al~~l~~---~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          541 VILKLFEFMHETHEGVQDMACDTFIKIVQ---KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHH---HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHHHH---HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            56667777777889999999999999994   34444432      112444444332   2234455567888888888


Q ss_pred             cCCCCCC--hhhhhhHHHHHHH----Hhc--cCC---------hhHHHHHHHHHHHhccCCcH-HHHHHHHhCcHHHHHH
Q 043116          185 RGKPQPP--FNQIRPALRVLAQ----LIR--SND---------EKVLTDACRALAYLADGTND-KIQAVIEAGVCPRLVK  246 (482)
Q Consensus       185 ~~~~~~~--~~~~~~~~~~L~~----ll~--~~~---------~~~~~~~l~~L~~l~~~~~~-~~~~~~~~~~l~~L~~  246 (482)
                      ...+...  ......+++.+..    +..  +.+         .......++++..++..-.. ....+ . .+.+.++.
T Consensus       618 ~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~v~~~lg~~f~~~~-~-~i~~~~l~  695 (1023)
T 4hat_C          618 SEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVAVCTSMGADFYPQL-G-HIYYNMLQ  695 (1023)
T ss_dssp             TTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHHHHHHHGGGGHHHH-H-HHHHHHHH
T ss_pred             HhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHHHHHHhcHHHHHHH-H-HHHHHHHH
Confidence            8764322  1122233333222    221  111         12334444544444421110 00000 0 11122221


Q ss_pred             hhC-----------------CCCh------hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc----CC----Cc
Q 043116          247 LLG-----------------HRSR------LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI----HN----HN  295 (482)
Q Consensus       247 ll~-----------------~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~----~~----~~  295 (482)
                      +.+                 ...+      .+++.+++.+.......+.. + .+...+++.+++.+-    ..    .+
T Consensus       696 ~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~-~-~~~~~~~~~l~~~vl~dY~~~~~~~r~  773 (1023)
T 4hat_C          696 LYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNL-D-DVVKVLVEPLLNAVLEDYMNNVPDARD  773 (1023)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCH-H-HHHHHTHHHHHHHHHHHHHHSCGGGCC
T ss_pred             HHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCH-H-HHHHHhHHHHHHHHHHHHHhCChhhcc
Confidence            110                 0111      23344444444444322211 1 122335555544331    11    13


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc---CChhHHHHHHHHHHHhhcCCC-------HHHHHHHHH
Q 043116          296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD---AEFGTKKEAAWVISNATSGGT-------HEQIKHLVR  365 (482)
Q Consensus       296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~---~~~~~~~~a~~aL~~l~~~~~-------~~~~~~l~~  365 (482)
                      +.+-.-..-.+..+.....+.+..+++ .++..-++++..   +.|+.+..-...+..+..++-       ++..+.   
T Consensus       774 ~~vL~l~s~iv~~~~~~~~~~~~~il~-~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~~~f~~~~~~~~~~~~~---  849 (1023)
T 4hat_C          774 AEVLNCMTTVVEKVGHMIPQGVILILQ-SVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAAFKL---  849 (1023)
T ss_dssp             HHHHHHHHHHHHHHGGGCHHHHHHHHH-HHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHHHCTHHHHTSCHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHChHHHHcCCHHHHHH---
Confidence            444444444444444333344444444 355555666653   578888887777777765432       222222   


Q ss_pred             cCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHh----hcCCCHHHHHHH
Q 043116          366 EGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENL----QSHDNNDIHEMS  441 (482)
Q Consensus       366 ~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l----~~~~~~~v~~~a  441 (482)
                        +++.++-..+++++++...+++.+..++.......       ...+...|-+.-..+.+.++    .++...-..+.-
T Consensus       850 --~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~~~~~~-------~~~~~~~f~~~~~~~~~~~~~~v~td~~h~~~f~~~  920 (1023)
T 4hat_C          850 --FVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMG-------NVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQ  920 (1023)
T ss_dssp             --HHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHC-------SSHHHHHHHHHHHHHHHHHHHHHHHSSSCGGGHHHH
T ss_pred             --HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence              45566667899999999999999999987665421       12345555555556665554    344555555666


Q ss_pred             HHHHHHhcC
Q 043116          442 VKILETYWC  450 (482)
Q Consensus       442 ~~~l~~~~~  450 (482)
                      ..++..+|.
T Consensus       921 ~~~l~~l~~  929 (1023)
T 4hat_C          921 ALLLMKLIS  929 (1023)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            666666554

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.81  E-value=0.0014  Score=69.45  Aligned_cols=307  Identities=8%  Similarity=-0.015  Sum_probs=167.5

Q ss_pred             CCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh--hhHHHHHHhCChH
Q 043116           81 REDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS--RCRDFVLSQGALI  158 (482)
Q Consensus        81 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~~~i~  158 (482)
                      +.+ ++++..++.|+......-  ....+.+.+.++.+..++.+  +.++..|+.+|..+.....  ..+..++..=.+.
T Consensus       204 ~~~-~~l~~~~L~~l~s~i~wi--~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~  278 (980)
T 3ibv_A          204 AKN-YGTVGLCLQVYAQWVSWI--NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN  278 (980)
T ss_dssp             TTC-HHHHHHHHHHHHHHTTTS--CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             cCC-HHHHHHHHHHHHHHHhhc--CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence            356 889999999999998732  23556667788888888864  8999999999999984432  2222222210011


Q ss_pred             HHHHHHcc-hhhhhHHHHHHHHH-------HHhhcCCCC-CC-------hhhhhhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116          159 PLLAELNE-HAKLSMLRTATWTL-------SNFCRGKPQ-PP-------FNQIRPALRVLAQLIRSNDEKVLTDACRALA  222 (482)
Q Consensus       159 ~l~~~l~~-~~~~~~~~~a~~~L-------~~L~~~~~~-~~-------~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~  222 (482)
                      ..+..+.. ..|.+..+..+..+       ..+ ...+. ..       .....++++.++.++.+++.++...++..+.
T Consensus       279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~-~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~  357 (980)
T 3ibv_A          279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAI-KSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLS  357 (980)
T ss_dssp             HHHCC-----CCHHHHHHHHHHHHHHHHHHHHH-HTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHH-ccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            11111111 34555544333333       233 22221 11       1334678888999998888888777766665


Q ss_pred             HhccC-----C----cHHHHHHHHhCcHHHHHHhhCCCCh----------------hhHHHHHHHHhHhhcCChhhHHHH
Q 043116          223 YLADG-----T----NDKIQAVIEAGVCPRLVKLLGHRSR----------------LVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       223 ~l~~~-----~----~~~~~~~~~~~~l~~L~~ll~~~~~----------------~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                      .+...     .    ......++ ..+++.++.-+..++.                +.|+...-.+..++.-.+......
T Consensus       358 ~~l~~~~~~~~~~~~~~~~~~~l-~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          358 DLLVSLRKESSSKELSASLKEFL-KSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHTTSCCCCHHHHHHH-HHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHhccccccccHHHHHHH-HHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            54421     0    11111111 1344455555543211                234443322222222222221110


Q ss_pred             HhcCchHHHHHHhc---CCCchhHHHHHHHHHHHHhcCCHHHHHHHH-HcC----ChHHHHHHHh-----cCChhHHHHH
Q 043116          278 INCGALRYLLGLLI---HNHNKSIKKEVCWIISNITAGNREQIQAVI-DAG----LIGPIVNLLQ-----DAEFGTKKEA  344 (482)
Q Consensus       278 ~~~~~i~~L~~ll~---~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~-~~~----~i~~L~~ll~-----~~~~~~~~~a  344 (482)
                      .-.-+.+.+...+.   +. +....+.+.++++.++.+......... ...    +++.+..++.     ..++.++..+
T Consensus       437 ~~~~i~~~l~~~l~~~~~~-~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~  515 (980)
T 3ibv_A          437 MYSAITSSLSTAATLSPEN-SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLY  515 (980)
T ss_dssp             HHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCC-CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            00011222223332   22 566788899999998875332111110 011    3444555554     5689999999


Q ss_pred             HHHHHHhhcCC--CHHHHHHHHHcCChHHHHh--cCCCCCHHHHHHHHHHHHHHHHhchh
Q 043116          345 AWVISNATSGG--THEQIKHLVREGCVKPLCD--LLPCPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       345 ~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~--ll~~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +++++..+..-  .++...     .+++.+++  .+.+++++++.+|..++.++++.+..
T Consensus       516 ~~~l~rys~~~~~~~~~l~-----~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          516 MEILVRYASFFDYESAAIP-----ALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHHHTGGGGGTCCTTHH-----HHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhcCchhHH-----HHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            99999987642  222222     24566666  66678889999999999999987665

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=97.64  E-value=0.00048  Score=72.88  Aligned_cols=304  Identities=9%  Similarity=0.035  Sum_probs=163.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC--hHhHHHHHhCCCh
Q 043116           38 SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT--SENTKVAIDHGAV  115 (482)
Q Consensus        38 s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i  115 (482)
                      +.++.+...++.++......-   ....+++.++++.+.+++.+   ++++..|+.||..+....  ++.+..++..=.+
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi---~~~~i~~~~ll~~l~~~L~~---~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L  277 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWI---NINLIVNEPCMNLLYSFLQI---EELRCAACETMTEIVNKKMKPLEKLNLLNILNL  277 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTS---CHHHHHCHHHHHHHHHHTTS---HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhc---CHHhhhcchHHHHHHHHcCC---hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhH
Confidence            467888889999999998753   36777788899999998874   689999999999988743  3333333322011


Q ss_pred             HHHHHhhC--CCCHHHHHHHHHHHHHhh------CCCh-----hhHHHH--HHhCChHHHHHHHcchhhhhHHHHHHHHH
Q 043116          116 PIFVKLLA--SPSDDVREQAVWALGNVA------GDSS-----RCRDFV--LSQGALIPLLAELNEHAKLSMLRTATWTL  180 (482)
Q Consensus       116 ~~L~~ll~--~~~~~~~~~a~~~L~~l~------~~~~-----~~~~~~--~~~~~i~~l~~~l~~~~~~~~~~~a~~~L  180 (482)
                      ...+..+.  ..|.+..+..++.+..++      ...+     +.+...  .-.+.++.++... .+++.++...++..+
T Consensus       278 ~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~-~~~~deVs~~t~~Fw  356 (980)
T 3ibv_A          278 NLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYL-SDDYDETSTAVFPFL  356 (980)
T ss_dssp             HHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHH-TCSSHHHHHTTHHHH
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHh-CCCchhHHHHHHHHH
Confidence            11122222  456666554444333222      1111     111100  1124677888888 445556666665555


Q ss_pred             HHhhcC----CC-CCChhhh----hhHHHHHHHHhccC-----Ch-----------hHHHHHHHHHHHhccCCcHHHHH-
Q 043116          181 SNFCRG----KP-QPPFNQI----RPALRVLAQLIRSN-----DE-----------KVLTDACRALAYLADGTNDKIQA-  234 (482)
Q Consensus       181 ~~L~~~----~~-~~~~~~~----~~~~~~L~~ll~~~-----~~-----------~~~~~~l~~L~~l~~~~~~~~~~-  234 (482)
                      ..+...    .. .......    ..+++.++.-+.-+     +.           +.|......+..++.-.++..-. 
T Consensus       357 ~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          357 SDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            554432    11 1111222    33444444433311     11           23333332222222212211111 


Q ss_pred             HHHhCcHHHHHHhhC---CCChhhHHHHHHHHhHhhcCChhhHHHHH-----hcCchHHHHHHhc-----CCCchhHHHH
Q 043116          235 VIEAGVCPRLVKLLG---HRSRLVLTAALRTIGNIVTGDDFQTQCII-----NCGALRYLLGLLI-----HNHNKSIKKE  301 (482)
Q Consensus       235 ~~~~~~l~~L~~ll~---~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-----~~~~i~~L~~ll~-----~~~~~~v~~~  301 (482)
                      +.+ -+.+.+...+.   +.++..++.++.+|+.++.+.......+.     -..+++.+..+++     .+ ++.|+..
T Consensus       437 ~~~-~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~-hp~V~~~  514 (980)
T 3ibv_A          437 MYS-AITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHP-HPLVQLL  514 (980)
T ss_dssp             HHH-HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCC-CHHHHHH
T ss_pred             HHH-HHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCC-CHHHHHH
Confidence            111 11122223332   24577899999999999876432111110     0124455666655     45 8999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh------cCChhHHHHHHHHHHHhhcCCC
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ------DAEFGTKKEAAWVISNATSGGT  356 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~------~~~~~~~~~a~~aL~~l~~~~~  356 (482)
                      ++++++..+.--..      ....++.++..+-      ++++.++..|+.++.+++..+.
T Consensus       515 ~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~  569 (980)
T 3ibv_A          515 YMEILVRYASFFDY------ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIK  569 (980)
T ss_dssp             HHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc------CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhh
Confidence            99999999862111      1235555555544      4567899999999999987543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.59  E-value=0.033  Score=49.73  Aligned_cols=200  Identities=13%  Similarity=0.107  Sum_probs=149.4

Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh------hhHHHHHHHHhccCChhHHHHHHHHHHH
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI------RPALRVLAQLIRSNDEKVLTDACRALAY  223 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------~~~~~~L~~ll~~~~~~~~~~~l~~L~~  223 (482)
                      .+...+.+..++..+ ..-+-+.+..++.++.++.+..........      ..++..|+..-.  ++++...+-..|+.
T Consensus        73 ei~~~dll~~Li~~l-~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLRe  149 (341)
T 1upk_A           73 ELYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRE  149 (341)
T ss_dssp             HHHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHhc-ccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHH
Confidence            345567777888888 677788899999999999998743332221      234444444333  45666666666666


Q ss_pred             hccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC---chHHHHHHhcCCCchhHHH
Q 043116          224 LADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG---ALRYLLGLLIHNHNKSIKK  300 (482)
Q Consensus       224 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~v~~  300 (482)
                      ...+ +.....+...+.+..+...+..++-++...|..++..+...+.......+..+   ++...-++|.++ +.-+|+
T Consensus       150 cir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~-NYVTkR  227 (341)
T 1upk_A          150 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKR  227 (341)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHH
T ss_pred             HHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCC-cchhHH
Confidence            6654 44666777778888999999999999999999999999887776665565543   567788899998 999999


Q ss_pred             HHHHHHHHHhcC--CHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          301 EVCWIISNITAG--NREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       301 ~a~~~L~nl~~~--~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      .+...|+.+...  +...+...+ +..-+..++.+|++.+..++.+|..++.-++.+
T Consensus       228 QSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          228 QSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            999999999873  444444444 455688999999999999999999999888764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.58  E-value=0.0086  Score=50.98  Aligned_cols=185  Identities=9%  Similarity=0.111  Sum_probs=130.2

Q ss_pred             ChhHHHHHHHHHHHhccCCcHHHHHHHHh-CcHHHHHHh-------hCCCC----hh-hHHHHHHHHhHhhcCChhhHHH
Q 043116          210 DEKVLTDACRALAYLADGTNDKIQAVIEA-GVCPRLVKL-------LGHRS----RL-VLTAALRTIGNIVTGDDFQTQC  276 (482)
Q Consensus       210 ~~~~~~~~l~~L~~l~~~~~~~~~~~~~~-~~l~~L~~l-------l~~~~----~~-v~~~a~~~L~~l~~~~~~~~~~  276 (482)
                      +++.++.|+..|+.=-+..++..-.++.+ |.+..+++=       ++.+.    .. -..+|+..+..++. +++....
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAs-hpetr~~   92 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVAS-HPETRSA   92 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHH-CTTTHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHc-CcchhhH
Confidence            56678888888877665555555566665 666665432       22222    11 22445555556665 7777788


Q ss_pred             HHhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHh
Q 043116          277 IINCGALRYLLGLLIHNH----NKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNA  351 (482)
Q Consensus       277 l~~~~~i~~L~~ll~~~~----~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l  351 (482)
                      ++++++.-.|..+|+...    -+.+|-.+.++++.+.. ++++.+..+++.+++|..++.++.++.-.|.-|...+..+
T Consensus        93 Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKI  172 (268)
T 2fv2_A           93 FLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKI  172 (268)
T ss_dssp             HHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            999998888888886642    24688889999999987 7888889999999999999999999999999999988888


Q ss_pred             hcCCCHHHHHHHHH--------cCChHHHHh-cCCCCCHHHHHHHHHHHHHHHHh
Q 043116          352 TSGGTHEQIKHLVR--------EGCVKPLCD-LLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       352 ~~~~~~~~~~~l~~--------~~~l~~L~~-ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ...  .....++..        ..++..++. +.+++++.+.++++.+..++.+.
T Consensus       173 L~d--d~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          173 LLD--DTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HHS--HHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             hcc--chhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            763  233222221        123444333 55678889999999888888754

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.49  E-value=0.049  Score=57.83  Aligned_cols=357  Identities=10%  Similarity=0.106  Sum_probs=185.6

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCC--------Cc---HHHHHhcC---CHHHHHHhhcCCCChHHHHHHHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN--------SP---IEKVIQSG---VVPRFVEFLMREDYPQLQFEAAR   93 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~--------~~---~~~~~~~g---~~~~L~~ll~~~~~~~v~~~a~~   93 (482)
                      .++.+++.+++ ++......+.+|..+...-..        ..   .+..+...   +++.+...++...++++...++.
T Consensus       151 fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~~~~Il~ll~~iL~~~~~~~lv~~~L~  229 (1073)
T 3gjx_A          151 FISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNEFSQIFQLCQFVMENSQNAPLVHATLE  229 (1073)
T ss_dssp             HHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH
Confidence            45555555542 334445566666666544100        00   11112221   23333344444444888888999


Q ss_pred             HHHHHhCCChHhHHHHHhCCChHHH-HHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHH----HH---
Q 043116           94 ALTNIASGTSENTKVAIDHGAVPIF-VKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLA----EL---  164 (482)
Q Consensus        94 ~L~~l~~~~~~~~~~~~~~g~i~~L-~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~----~l---  164 (482)
                      ++..+..--  ....+++.+.++.+ ..++  .++.++..|+.||..+.... +.+.+.+..  ....++.    ++   
T Consensus       230 ~L~~~~sWI--~i~~i~~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k~~~~~~~~~~~--lf~~~~~~i~~ilp~~  303 (1073)
T 3gjx_A          230 TLLRFLNWI--PLGYIFETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGVSVSQYEEQFET--LFTLTMMQLKQMLPLN  303 (1073)
T ss_dssp             HHHHHTTTS--CTHHHHSSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHSCSGGGHHHHHH--HHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHhc--CHHHhccchHHHHHHHHhc--CChHHHHHHHHHHHHHHhccccchHHHHHH--HHHHHHHHHHHhcCCc
Confidence            999998732  23567788888888 4666  56789999999999988532 333232221  1222221    11   


Q ss_pred             ---------cchhhhhHHHHHHHHHHHhhcCC------CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC--
Q 043116          165 ---------NEHAKLSMLRTATWTLSNFCRGK------PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG--  227 (482)
Q Consensus       165 ---------~~~~~~~~~~~a~~~L~~L~~~~------~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~--  227 (482)
                               ....|++.....+.++..+....      +.........++..++.+...++.++...++..-..+...  
T Consensus       304 ~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~s~~~d~ei~kitf~fW~~L~~~L~  383 (1073)
T 3gjx_A          304 TNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLVSEVEETEIFKICLEYWNHLAAELY  383 (1073)
T ss_dssp             SCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHH
Confidence                     12224455555566665544332      0001112234455566666677888877776664444321  


Q ss_pred             --C------c-----------HHHHHHHH---hCcHHHHHHhhCCCCh----------hhHH------------HHHHHH
Q 043116          228 --T------N-----------DKIQAVIE---AGVCPRLVKLLGHRSR----------LVLT------------AALRTI  263 (482)
Q Consensus       228 --~------~-----------~~~~~~~~---~~~l~~L~~ll~~~~~----------~v~~------------~a~~~L  263 (482)
                        .      .           .....++.   ..+...++..|..|++          .+|.            ..-.+|
T Consensus       384 ~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~ge~~re~~~d~~~~~ly~~mrd~L  463 (1073)
T 3gjx_A          384 RESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQGEVVREFMKDTDSINLYKNMRETL  463 (1073)
T ss_dssp             HHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSSSCEEEEECSSCHHHHHHHHHHHHH
T ss_pred             hhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCcccchHHHHHHhhcchHHHHHHHHHHH
Confidence              0      0           01111111   1223333444443321          0000            011122


Q ss_pred             hHhhcCChhhHHHHHhcCchHHHHHHhcCC-CchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcC-----
Q 043116          264 GNIVTGDDFQTQCIINCGALRYLLGLLIHN-HNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDA-----  336 (482)
Q Consensus       264 ~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~-----  336 (482)
                      ..++.-.......    -+.+.+.+.+..+ .+......++|+++.++.. .++.-..++. .+++.|+.+....     
T Consensus       464 ~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~  538 (1073)
T 3gjx_A          464 VYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDN  538 (1073)
T ss_dssp             HHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHH
T ss_pred             HHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccch
Confidence            2222111111111    1334444444432 2577889999999999863 2221222222 3677777776543     


Q ss_pred             ChhHHHHHHHHHHHhhcC--CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhc
Q 043116          337 EFGTKKEAAWVISNATSG--GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       337 ~~~~~~~a~~aL~~l~~~--~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~  401 (482)
                      ...++...+++++.....  .+++....     ++..|.+.+.++++.++..|..++.++...+...
T Consensus       539 k~~vas~i~~vlgrY~~wl~~h~~~L~~-----vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~  600 (1073)
T 3gjx_A          539 KAIIASNIMYIVGQYPRFLRAHWKFLKT-----VVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRH  600 (1073)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHCHHHHHH-----HHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHhhhHHHHHhCHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence            123455566777766442  13333333     6888888889999999999999999999887763

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=97.47  E-value=0.05  Score=57.71  Aligned_cols=305  Identities=12%  Similarity=0.147  Sum_probs=160.9

Q ss_pred             HHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHH-HHhhcCCCChHHHHHHHHHHHHHhCCC-hHhHH
Q 043116           31 TMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRF-VEFLMREDYPQLQFEAARALTNIASGT-SENTK  107 (482)
Q Consensus        31 ~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L-~~ll~~~~~~~v~~~a~~~L~~l~~~~-~~~~~  107 (482)
                      .+.+.+. +.++.+...++.+|..+.+.-   ....+++.++++.+ ..++.  + ++++..|+.||..+.... ++...
T Consensus       210 ll~~iL~~~~~~~lv~~~L~~L~~~~sWI---~i~~i~~~~ll~~L~~~~L~--~-~~~r~aA~dcL~eIv~k~~~~~~~  283 (1073)
T 3gjx_A          210 LCQFVMENSQNAPLVHATLETLLRFLNWI---PLGYIFETKLISTLIYKFLN--V-PMFRNVSLKCLTEIAGVSVSQYEE  283 (1073)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHTTTS---CTHHHHSSSHHHHHHHHTSS--S-HHHHHHHHHHHHHHHHSCSGGGHH
T ss_pred             HHHHHhcccCCHHHHHHHHHHHHHHHHhc---CHHHhccchHHHHHHHHhcC--C-hHHHHHHHHHHHHHHhccccchHH
Confidence            3334443 567888888899999998764   36678888999988 46663  4 789999999999987632 22222


Q ss_pred             HHHh--CCChHHHHHhhC-------------CCCHHHHHHHHHHHHHhhCCChhhHHHHHHh-C-------ChHHHHHHH
Q 043116          108 VAID--HGAVPIFVKLLA-------------SPSDDVREQAVWALGNVAGDSSRCRDFVLSQ-G-------ALIPLLAEL  164 (482)
Q Consensus       108 ~~~~--~g~i~~L~~ll~-------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~-------~i~~l~~~l  164 (482)
                      .+..  .+++..+..++.             ..+.+....-...+..+...   ....+... +       ++..++.+-
T Consensus       284 ~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~---~~~lIe~~p~~~~~l~~~l~~ll~~s  360 (1073)
T 3gjx_A          284 QFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKE---HGQLLEKRLNLREALMEALHYMLLVS  360 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHH---HHHHHHHCGGGHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHH---HHHHHhcCccchHHHHHHHHHHHHHh
Confidence            2211  112222222221             12234444444455444311   11122111 1       122233332


Q ss_pred             cchhhhhHHHHHHHHHHHhhcC----CCC----C-------------ChhhhhhHHHHHHHH----hccCC---------
Q 043116          165 NEHAKLSMLRTATWTLSNFCRG----KPQ----P-------------PFNQIRPALRVLAQL----IRSND---------  210 (482)
Q Consensus       165 ~~~~~~~~~~~a~~~L~~L~~~----~~~----~-------------~~~~~~~~~~~L~~l----l~~~~---------  210 (482)
                       ..++.++...+......|...    .+.    .             .......++..|...    +..++         
T Consensus       361 -~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~  439 (1073)
T 3gjx_A          361 -EVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQ  439 (1073)
T ss_dssp             -TCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSS
T ss_pred             -CCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCccc
Confidence             456777777766655544431    110    0             111123344443333    22111         


Q ss_pred             ----------hh---HHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhhcCChhh-H
Q 043116          211 ----------EK---VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIVTGDDFQ-T  274 (482)
Q Consensus       211 ----------~~---~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~-~  274 (482)
                                .+   .....-.+|..++.-.......    -+++.+...+..  .++.....++|+++.++..-.+. -
T Consensus       440 ge~~re~~~d~~~~~ly~~mrd~L~~lt~l~~~~~~~----i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E  515 (1073)
T 3gjx_A          440 GEVVREFMKDTDSINLYKNMRETLVYLTHLDYVDTEI----IMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDE  515 (1073)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHH
T ss_pred             chHHHHHHhhcchHHHHHHHHHHHHHHhcCCHHHHHH----HHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccc
Confidence                      00   1111112223333111111111    123444444443  45788999999999998543321 2


Q ss_pred             HHHHhcCchHHHHHHhcCCC----chhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116          275 QCIINCGALRYLLGLLIHNH----NKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV  347 (482)
Q Consensus       275 ~~l~~~~~i~~L~~ll~~~~----~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a  347 (482)
                      +.++ ..+++.|+.+.++..    ...++...+|+++....   ..++.    ++ .++..+++.+.+.++.++..|+.+
T Consensus       516 ~~~L-p~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~----L~-~vl~~L~~~m~~~~~~vq~aA~~a  589 (1073)
T 3gjx_A          516 KRFL-VTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKF----LK-TVVNKLFEFMHETHDGVQDMACDT  589 (1073)
T ss_dssp             HHHH-HHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHH----HH-HHHHHHHHHTTCCSTTHHHHHHHH
T ss_pred             cchH-HHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHH----HH-HHHHHHHHHHhcCCHHHHHHHHHH
Confidence            1121 246777777776542    23355666788888765   22332    22 266777788888899999999999


Q ss_pred             HHHhhcCC
Q 043116          348 ISNATSGG  355 (482)
Q Consensus       348 L~~l~~~~  355 (482)
                      +..++..+
T Consensus       590 f~~i~~~C  597 (1073)
T 3gjx_A          590 FIKIAQKC  597 (1073)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHH
Confidence            99998754

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.37  E-value=0.0054  Score=53.54  Aligned_cols=180  Identities=14%  Similarity=0.059  Sum_probs=117.1

Q ss_pred             HHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC----ChhhHHHH
Q 043116          202 LAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG----DDFQTQCI  277 (482)
Q Consensus       202 L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~----~~~~~~~l  277 (482)
                      +...+.+.|..-+..++..|.......++......+ .+++.+.-.+.+.+..+...++.+|..+...    .......-
T Consensus        51 ~~~~lfs~d~k~~~~ale~L~~~l~~~~~~~~~~lD-ll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~e  129 (266)
T 2of3_A           51 LMSQLFHKDFKQHLAALDSLVRLADTSPRSLLSNSD-LLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEE  129 (266)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHHHCHHHHHHTHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhhhChHHHHHHHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence            344455567766777777666655333322111111 0222222233477888888888888776531    11111110


Q ss_pred             HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCC
Q 043116          278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGT  356 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~  356 (482)
                       -.-++|.|+.-+-++ ...+|..+-.++..++. ..+.        .+++.+++-+.+.+..++..++..+..+.....
T Consensus       130 -a~~~lP~LveKlGd~-k~~vR~~~r~il~~l~~v~~~~--------~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G  199 (266)
T 2of3_A          130 -VSAFVPYLLLKTGEA-KDNMRTSVRDIVNVLSDVVGPL--------KMTPMLLDALKSKNARQRSECLLVIEYYITNAG  199 (266)
T ss_dssp             -HHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH--------HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHC
T ss_pred             -HHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHCCHH--------HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcC
Confidence             123689999999888 78899888887777654 2233        356667777789999999999999998865221


Q ss_pred             HHHHHHHHHcCCh---HHHHhcCCCCCHHHHHHHHHHHHHHHHhc
Q 043116          357 HEQIKHLVREGCV---KPLCDLLPCPDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       357 ~~~~~~l~~~~~l---~~L~~ll~~~~~~v~~~~l~~L~~l~~~~  398 (482)
                      ..      ....+   +.+..++.++|..|+..|+.++..++...
T Consensus       200 ~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          200 IS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             SG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            11      23468   99999999999999999999999888653

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=97.35  E-value=0.0084  Score=52.31  Aligned_cols=178  Identities=12%  Similarity=0.043  Sum_probs=118.2

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHH---cchhhhhHHHHHHHHHHHhh----cCCC
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAEL---NEHAKLSMLRTATWTLSNFC----RGKP  188 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l---~~~~~~~~~~~a~~~L~~L~----~~~~  188 (482)
                      +.+...+.+.+..-+..++..|.......+.   .+..  .+..++.-+   ..+++..+...++.+|..+.    ....
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y  123 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSPR---SLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET  123 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCHH---HHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhChH---HHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccc
Confidence            4455555566767666777766665533321   1111  222333322   12456667777776666654    2222


Q ss_pred             CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ........-++|.|+.-+.++.+.++..+-.++..+....+.       ..+++.++..+++.++..+..++..++.+..
T Consensus       124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~-------~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP-------LKMTPMLLDALKSKNARQRSECLLVIEYYIT  196 (266)
T ss_dssp             CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH-------HHHHHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence            222223467899999999999999999888888766632111       1356788888999999999999999999876


Q ss_pred             CChhhHHHHHhcCch---HHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          269 GDDFQTQCIINCGAL---RYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       269 ~~~~~~~~l~~~~~i---~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      .....     ....+   +.+.+++.+. +..||..|..++..+-.
T Consensus       197 ~~G~~-----~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          197 NAGIS-----PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHCSG-----GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHH
T ss_pred             hcCCC-----ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence            33221     23567   9999999998 99999999999987765

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=97.34  E-value=0.015  Score=51.92  Aligned_cols=207  Identities=12%  Similarity=0.064  Sum_probs=151.1

Q ss_pred             HHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh----hhHHHHHh-cCchHHHHHHhcCCCchhHHHHHHHHHH
Q 043116          233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD----FQTQCIIN-CGALRYLLGLLIHNHNKSIKKEVCWIIS  307 (482)
Q Consensus       233 ~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~-~~~i~~L~~ll~~~~~~~v~~~a~~~L~  307 (482)
                      +.++..+.+..|+..|..-+-+.|..+..+..++.+...    .....+.+ ..++..|+...+   ++++.-.+...|.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe---~~diAl~~G~mLR  148 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLR  148 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc---cchhHhHHHHHHH
Confidence            346667889999999988888999999999999987543    33444543 234444444444   4456666666666


Q ss_pred             HHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhcCCCCCHHHH
Q 043116          308 NITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE---GCVKPLCDLLPCPDPQIV  384 (482)
Q Consensus       308 nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~  384 (482)
                      .++.+ ....+.++..+.+..+.++++.++.++...|..++..+... .+.....++..   .++..+..++.+++.=++
T Consensus       149 ecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTk  226 (341)
T 1upk_A          149 ECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTK  226 (341)
T ss_dssp             HHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHH
T ss_pred             HHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhc-cHHHHHHHHHHhHHHHHHHHHHHhcCCcchhH
Confidence            66653 55567788888899999999999999999999999999876 44444444443   357778889999999999


Q ss_pred             HHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          385 TVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       385 ~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      ..+++.|+.++-...+..         .....+.+..-+..+-.++.+++..++-.|-.+..-+.....
T Consensus       227 RQSlKLLgelLldr~N~~---------vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~  286 (341)
T 1upk_A          227 RQSLKLLGELLLDRHNFT---------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPN  286 (341)
T ss_dssp             HHHHHHHHHHHHSGGGHH---------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHhCchHHH---------HHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCC
Confidence            999999999997654432         123334444567778888999999999999988876655433

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.32  E-value=0.00036  Score=66.10  Aligned_cols=249  Identities=16%  Similarity=0.112  Sum_probs=157.4

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHH-HHhcCCHHHHHHhhc---------CCCChHHHHHHH
Q 043116           23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEK-VIQSGVVPRFVEFLM---------REDYPQLQFEAA   92 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~g~~~~L~~ll~---------~~~~~~v~~~a~   92 (482)
                      +|..+....|+..|-++..+++.-|+..|+.+....+...... ....++.-.++.++.         ++-=..||+.|+
T Consensus       170 eWPfqfcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaA  249 (800)
T 3oc3_A          170 ENVLDFFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAA  249 (800)
T ss_dssp             CSGGGTTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHH
Confidence            3444467788888889999999999999999987642110000 001133333333332         111146999999


Q ss_pred             HHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhH
Q 043116           93 RALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSM  172 (482)
Q Consensus        93 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~  172 (482)
                      .+|+.+ .+-+..      ..++..++..+..+..+++..++-.|..+.   +-..+ +  .++++.++.-| .+.|.++
T Consensus       250 QtLGaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~-L--d~Vv~aVL~GL-~D~DDDV  315 (800)
T 3oc3_A          250 YLLSRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED-K--DGLCRKLVSLL-SSPDEDI  315 (800)
T ss_dssp             HHHHHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC-H--HHHHHHHHHHT-TCSSHHH
T ss_pred             HHHHHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH-H--HHHHHHHHhhc-CCcccHH
Confidence            999999 644443      355666666667888999999999998882   11111 1  23566777777 6678899


Q ss_pred             HHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCC--hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCC
Q 043116          173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSND--EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGH  250 (482)
Q Consensus       173 ~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~--~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~  250 (482)
                      +..|+.+|.-++      .......++..+...|.+-|  ......+...|+.++..+..   ...+...+|.|.+++.+
T Consensus       316 RAVAAetLiPIA------~p~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH  386 (800)
T 3oc3_A          316 KLLSAELLCHFP------ITDSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS  386 (800)
T ss_dssp             HHHHHHHHTTSC------CSSTHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred             HHHHHHHhhhhc------chhhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence            999999999887      22345677777887776543  22334444555555533321   01123678999999999


Q ss_pred             CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHH-HHhcCCCchhHHHHHHHHH
Q 043116          251 RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLL-GLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       251 ~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~-~ll~~~~~~~v~~~a~~~L  306 (482)
                      +-.+||.+++.++..+.  ...         ++..+. .+|-.. +.+++..+..+-
T Consensus       387 tITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~-neeIl~lS~~VW  431 (800)
T 3oc3_A          387 PVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEE-KDEIREMAIKLL  431 (800)
T ss_dssp             SSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCS-CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            99999999999998887  222         222322 333344 666766555443

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.016  Score=51.67  Aligned_cols=191  Identities=10%  Similarity=0.088  Sum_probs=126.0

Q ss_pred             HHHhhCCCChhhHHHHHHHHhHhhcCChhhH--HHHH--hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCC------
Q 043116          244 LVKLLGHRSRLVLTAALRTIGNIVTGDDFQT--QCII--NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGN------  313 (482)
Q Consensus       244 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~--~~l~--~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~------  313 (482)
                      +-.-|.+.++..|..++..+..+....+...  ....  -....+.+.+.+.+. +..+...++.++..++...      
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            5577899999999999999988876443221  1111  113456677788777 9999999999999887521      


Q ss_pred             HHHHHHHHHcCChHHHHHH-HhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHH
Q 043116          314 REQIQAVIDAGLIGPIVNL-LQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLE  392 (482)
Q Consensus       314 ~~~~~~l~~~~~i~~L~~l-l~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~  392 (482)
                      .......+ ..+++.|++= +.+....++..+..++..++....+..       .+++.+...+++.+|+++..++..|.
T Consensus        93 ~~~~~~~~-~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~-------~~~e~l~~~l~~Knpkv~~~~l~~l~  164 (278)
T 4ffb_C           93 NAHNITLI-STWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT-------QSVELVIPFFEKKLPKLIAAAANCVY  164 (278)
T ss_dssp             HHHHHHHH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH-------HHHHHHGGGGGCSCHHHHHHHHHHHH
T ss_pred             cchhHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH-------HHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            11111122 2466777653 667778899888888887765332111       13567788889999999999999999


Q ss_pred             HHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCC
Q 043116          393 NILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRV  453 (482)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~  453 (482)
                      +++........     .......     ..++.+..+..+.+++|+..|..++-.++.--+
T Consensus       165 ~~l~~fg~~~~-----~~k~~l~-----~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G  215 (278)
T 4ffb_C          165 ELMAAFGLTNV-----NVQTFLP-----ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTG  215 (278)
T ss_dssp             HHHHHHTTTTC-----CHHHHHH-----HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHhCCCcC-----CchhHHH-----HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence            98865322110     0111111     224567778899999999999999887765443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=97.19  E-value=0.046  Score=51.22  Aligned_cols=257  Identities=13%  Similarity=0.068  Sum_probs=154.3

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhh
Q 043116          118 FVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP  197 (482)
Q Consensus       118 L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~  197 (482)
                      ++...+ +++..+..|...|..+..+-|..++.     ++..++.++ .+.|..++..|...|..+|.+      .....
T Consensus        34 Il~~~k-g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLc-EDed~~IR~qaik~Lp~~ck~------~~i~k  100 (507)
T 3u0r_A           34 ILDGVK-GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLC-EDEDVSIRRQAIKELPQFATG------ENLPR  100 (507)
T ss_dssp             HHHGGG-SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHH-TCSSHHHHHHHHHHGGGGCCT------TCHHH
T ss_pred             HHHhcC-CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHH-hcccHHHHHHHHHhhHHHhhh------hhhhh
Confidence            344443 57899999999999999888887665     466889999 788889999999999999987      33678


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHH
Q 043116          198 ALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQC  276 (482)
Q Consensus       198 ~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~  276 (482)
                      +...|.++|++.++.-...+-.+|..+...++..        .+..+...+..+++.+|..++..|..-...- ......
T Consensus       101 iaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk~--------tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~l~~  172 (507)
T 3u0r_A          101 VADILTQLLQTDDSAEFNLVNNALLSIFKMDAKG--------TLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTK  172 (507)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHHH--------HHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTTSCH
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHhcChHH--------HHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhhccH
Confidence            8999999999999888888888887777555432        2344555554467889999888886544321 111112


Q ss_pred             HHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHH---HhcCChhHHHHHHHHHHHh-
Q 043116          277 IINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNL---LQDAEFGTKKEAAWVISNA-  351 (482)
Q Consensus       277 l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~l---l~~~~~~~~~~a~~aL~~l-  351 (482)
                      -.+.-++..+.++|++- ...--.....+|..+-. .++...+.+++  ++....++   +...|++.....+.++... 
T Consensus       173 E~E~~i~~~ikK~L~DV-T~~EF~L~m~lL~~lkl~~t~~g~qeLv~--ii~eQa~L~~~f~~sD~e~vdRlI~C~~~AL  249 (507)
T 3u0r_A          173 EVEELILTESKKVLEDV-TGEEFVLFMKILSGLKSLQTVSGRQQLVE--LVAEQADLEQTFNPSDPDCVDRLLQCTRQAV  249 (507)
T ss_dssp             HHHHHHHHHHHHHTTSC-CHHHHHHHHHHHHTSGGGSSHHHHHHHHH--HHHHHHTTTSCCCSSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHhccc-cHHHHHHHHHHHHhcccccCchHHHHHHH--HHHHHHhccCCCCCcCHHHHHHHHHHHHHHH
Confidence            22333556677777555 33222233344443332 34444444433  22222111   1123555444444444433 


Q ss_pred             ---hcC-CCHHHHHHHHHcCChHHHHhcCCCC-CHHHHHHHHHHHHHHHHhch
Q 043116          352 ---TSG-GTHEQIKHLVREGCVKPLCDLLPCP-DPQIVTVCLIGLENILKVGE  399 (482)
Q Consensus       352 ---~~~-~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~~l~~L~~l~~~~~  399 (482)
                         +.. .+.....++.+ .+++.+-.+-... .++.+...++++.-+..++.
T Consensus       250 P~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~  301 (507)
T 3u0r_A          250 PLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCG  301 (507)
T ss_dssp             GGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCC
T ss_pred             HHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCC
Confidence               222 13445555444 4777766655432 22355555666666655544

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=97.16  E-value=0.041  Score=48.93  Aligned_cols=312  Identities=17%  Similarity=0.191  Sum_probs=176.3

Q ss_pred             HHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh
Q 043116           90 EAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK  169 (482)
Q Consensus        90 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~  169 (482)
                      .+...| ++..++.+..+-++..+++..+...++-++.++.+.....|...+....-+..-  -.+.+|.++..+..+++
T Consensus       262 R~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          262 RTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHHHHHHHCCC
T ss_pred             HHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHHHHhccCCC
Confidence            344444 455568888899999999999999999999999999999999998443322111  12358888999988889


Q ss_pred             hhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccC-------Chh-------HHHHHHHHHHHhcc------C-
Q 043116          170 LSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN-------DEK-------VLTDACRALAYLAD------G-  227 (482)
Q Consensus       170 ~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~-------~~~-------~~~~~l~~L~~l~~------~-  227 (482)
                      .++.....+.|+|..... +......-.++++.+...+...       +..       +...+++++.|..-      + 
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG  418 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG  418 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence            999999999999999887 4445555578888888776421       222       33344444444331      0 


Q ss_pred             -----CcHHHHH---HHHhCcHHHHHHhhCCCCh------hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCC
Q 043116          228 -----TNDKIQA---VIEAGVCPRLVKLLGHRSR------LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHN  293 (482)
Q Consensus       228 -----~~~~~~~---~~~~~~l~~L~~ll~~~~~------~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~  293 (482)
                           .+...+.   +++..++..++.+|+.+.-      +.|...++.+.-+.+ .+..-+     .   .++....+.
T Consensus       419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~LvlR-TP~~Pk-----d---~~l~VtDd~  489 (619)
T 3c2g_A          419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLLR-TPFVPK-----D---GVLNVIDEN  489 (619)
T ss_dssp             CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHHT-CTTSCC-----T---TGGGCCCTT
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHhc-CCCCch-----h---hhccccchh
Confidence                 1111222   3334677777777765431      344444444333332 111100     0   011222222


Q ss_pred             CchhHHHHHHHHHHHHhc-----CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCC
Q 043116          294 HNKSIKKEVCWIISNITA-----GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGC  368 (482)
Q Consensus       294 ~~~~v~~~a~~~L~nl~~-----~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~  368 (482)
                      ....+....|.+++-.-.     ...+..+.+++ ..+..|+.++..-..+.  .++..+..+.                
T Consensus       490 rk~NLvGHIciA~sWa~~Q~tNertqdTkqQLiE-R~fSLL~~LmEQc~~E~--qVAh~~YsIs----------------  550 (619)
T 3c2g_A          490 RKENLIGHICAAYSWVFRQPNNTRTQSTKQQLVE-RTISLLLVLMEQCGAEK--EVAQYSYSID----------------  550 (619)
T ss_dssp             TCCCHHHHHHHHHHHHHHSCCCTTTHHHHHHHHH-HHHHHHHHHHHHTTCHH--HHHHTTTTSC----------------
T ss_pred             hhhhhHHHHHHHHHHhhcCccccchhhHHHHHHH-HHHHHHHHHHHHhhhHH--HHHhheeecc----------------
Confidence            122233333333332221     23444455554 35555555555321121  1222222221                


Q ss_pred             hHHHHhcCCCC--CHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHH
Q 043116          369 VKPLCDLLPCP--DPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILE  446 (482)
Q Consensus       369 l~~L~~ll~~~--~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~  446 (482)
                        -=..++++.  .|.....++..=.++++.++.....              ..---..++-+.+|.|+++.+.|..++.
T Consensus       551 --CPLnlLn~nQ~KP~FI~NVL~VcDKILeHcP~~Ad~--------------W~i~r~tle~l~NHsNsDIa~aasSLL~  614 (619)
T 3c2g_A          551 --CPLNLLNGNQVKPTFIHNVLVVCDKILEHCPTRADI--------------WTIDRPMLEGLTNHRNSDIAKAANSLLS  614 (619)
T ss_dssp             --CGGGGGSSCCCCHHHHHHHHHHHHHHHHHCTTHHHH--------------SCCCHHHHHHHHTCSSHHHHHHHHHHHT
T ss_pred             --CchhhhcccccChHHHHHHHHHHHHHHHhCcchhcc--------------ceechHHHHHHhcCCCchHHHHHHHHHH
Confidence              112344443  3556667777777888777664321              1111234566679999999999999887


Q ss_pred             Hh
Q 043116          447 TY  448 (482)
Q Consensus       447 ~~  448 (482)
                      ++
T Consensus       615 rf  616 (619)
T 3c2g_A          615 RF  616 (619)
T ss_dssp             TS
T ss_pred             hC
Confidence            65

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0063  Score=54.33  Aligned_cols=186  Identities=15%  Similarity=0.098  Sum_probs=122.3

Q ss_pred             HHHHHcchhhhhHHHHHHHHHHHhhcCCCCCC-----hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc-----
Q 043116          160 LLAELNEHAKLSMLRTATWTLSNFCRGKPQPP-----FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN-----  229 (482)
Q Consensus       160 l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~-----~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~-----  229 (482)
                      +-..+ .+.+-..+..++..+..+....+...     ........+.+...+.+.+..++..++.++..++....     
T Consensus        14 l~e~l-~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~   92 (278)
T 4ffb_C           14 LEERL-TYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLK   92 (278)
T ss_dssp             HHHHT-TCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CC
T ss_pred             HHHhc-ccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            33445 56667778888888877776542211     11233455666778889999999999999998875322     


Q ss_pred             HHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          230 DKIQAVIEAGVCPRLVK-LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       230 ~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      .......-..+++.++. .+.+..+.++..+..++..++.......      .+++.+...+.+. ++.++.+++..|..
T Consensus        93 ~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~------~~~e~l~~~l~~K-npkv~~~~l~~l~~  165 (278)
T 4ffb_C           93 NAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSIT------QSVELVIPFFEKK-LPKLIAAAANCVYE  165 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSH------HHHHHHGGGGGCS-CHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHH------HHHHHHHHHHhcc-CHHHHHHHHHHHHH
Confidence            11111222345676665 4788888999999988887775332211      1345677788888 99999999988888


Q ss_pred             Hhc--CCHH-HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          309 ITA--GNRE-QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       309 l~~--~~~~-~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      +..  +... .....++ .+++.+..++.+.++.||..|..++..+...
T Consensus       166 ~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          166 LMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence            864  2111 0112222 3566677788999999999999999988764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.93  E-value=0.0069  Score=57.66  Aligned_cols=244  Identities=13%  Similarity=0.123  Sum_probs=154.8

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHh--HHHHHhCCChHHHHHhhC----------CCCHHHHHHHHHHHH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSEN--TKVAIDHGAVPIFVKLLA----------SPSDDVREQAVWALG  138 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~--~~~~~~~g~i~~L~~ll~----------~~~~~~~~~a~~~L~  138 (482)
                      +...|+.-|-++.| ++|..|+.+|..+.......  +..-.+..+.-.++.++.          ..-..+|+.|+.+|+
T Consensus       175 fcE~L~~DLFdp~W-EiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          175 FFEQISDNLLSYEW-YKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             TTHHHHHHTTCSSH-HHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcch-hhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            55667777778885 99999999999987632211  000011123333444331          122579999999999


Q ss_pred             HhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHH
Q 043116          139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDAC  218 (482)
Q Consensus       139 ~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l  218 (482)
                      .+ ..-+.-      ..++..++..+ ....-+++.-++..|.++...   ..  ...++++.++..|.+.|++++..|+
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l-~~~~WEVRHGGLLGLKYL~DL---L~--~Ld~Vv~aVL~GL~D~DDDVRAVAA  320 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFL-DSGDWQVQFSGLIALGYLKEF---VE--DKDGLCRKLVSLLSSPDEDIKLLSA  320 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGG-GCSCHHHHHHHHHHHHHTGGG---CC--CHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhc-CCCCeeehhhhHHHHHHHHHH---HH--HHHHHHHHHHhhcCCcccHHHHHHH
Confidence            98 554432      22333344333 445567888888999998111   11  1688999999999999999999999


Q ss_pred             HHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCC--hhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch
Q 043116          219 RALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRS--RLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK  296 (482)
Q Consensus       219 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~--~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  296 (482)
                      .+|.-++  .++...     .++..+-..|.+-+  ..-....+..|+.++......   -.....+|.|..++++. -.
T Consensus       321 etLiPIA--~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a---~~dp~LVPRL~PFLRHt-IT  389 (800)
T 3oc3_A          321 ELLCHFP--ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPEL---SIPPERLKDIFPCFTSP-VP  389 (800)
T ss_dssp             HHHTTSC--CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTC---CCCSGGGGGTGGGGTCS-SH
T ss_pred             HHhhhhc--chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCccc---ccChHHHHHHHhhhcCC-cH
Confidence            9999999  222232     23445555554422  223444566677766544211   11237899999999999 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHH
Q 043116          297 SIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVIS  349 (482)
Q Consensus       297 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~  349 (482)
                      .||..+..++..+.  .....+.+.+        .++-+++++++..+..+..
T Consensus       390 SVR~AVL~TL~tfL--~~~~LRLIFQ--------NILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          390 EVRTSILNMVKNLS--EESIDFLVAE--------VVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHHTTTCC--CHHHHHHHHH--------HHHHCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hhhHHHHHHH--------HHHhCCcHHHHHHHHHHHH
Confidence            99999999998876  2332222222        3445778888887777764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.86  E-value=0.046  Score=46.60  Aligned_cols=196  Identities=13%  Similarity=0.046  Sum_probs=124.9

Q ss_pred             ChhhHHHHHHHHhHhhcCChhhHHHHHhc-CchHHHHHHh----cC---CC-chhHHHHHHH--HHHHHhcCCHHHHHHH
Q 043116          252 SRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYLLGLL----IH---NH-NKSIKKEVCW--IISNITAGNREQIQAV  320 (482)
Q Consensus       252 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll----~~---~~-~~~v~~~a~~--~L~nl~~~~~~~~~~l  320 (482)
                      +++.|+.|+.-|+.=-...++..-.++.. |.+..|++=+    ..   +. ....-...|.  +|-......++.+..+
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            45568888877776555445555556654 5554443222    11   10 1111222233  3333333567878899


Q ss_pred             HHcCChHHHHHHHhcC-----ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          321 IDAGLIGPIVNLLQDA-----EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       321 ~~~~~i~~L~~ll~~~-----~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +++++.--|..++...     .+.+|..++.+++.++...+++...++.+.++++.....++.++.--+..|..++.+++
T Consensus        94 l~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL  173 (268)
T 2fv2_A           94 LAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKIL  173 (268)
T ss_dssp             HHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHh
Confidence            9999887888888733     25789999999999999999999999999999999999999999988888999999998


Q ss_pred             HhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          396 KVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       396 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      ..+....-.+  .+.+.|.....-.+  ..+.++..++++++-+...++..++.+.
T Consensus       174 ~dd~GL~YiC--~t~eRF~av~~vL~--~mV~~l~~~ps~RLLKhiircYlRLsdn  225 (268)
T 2fv2_A          174 LDDTGLAYIC--QTYERFSHVAMILG--KMVLQLSKEPSARLLKHVVRCYLRLSDN  225 (268)
T ss_dssp             HSHHHHHHHT--SSHHHHHHHHHHHH--HHHHHTTTSCCHHHHHHHHHHHHHHTTS
T ss_pred             ccchhHHHHH--ccHHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHhcC
Confidence            7655443222  11222222211111  1233455677877766665555554443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.74  E-value=0.39  Score=45.12  Aligned_cols=299  Identities=11%  Similarity=0.066  Sum_probs=169.9

Q ss_pred             HHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116           73 PRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL  152 (482)
Q Consensus        73 ~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  152 (482)
                      ..++...+ ++ +..+..|+..+.....+-|+..+.     .+..+++++.+++..+|..|+..|..+|.+ . ....  
T Consensus        32 ~~Il~~~k-g~-~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~i~k--  100 (507)
T 3u0r_A           32 QVILDGVK-GG-TKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG-E-NLPR--  100 (507)
T ss_dssp             HHHHHGGG-SC-HHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-CHHH--
T ss_pred             HHHHHhcC-CC-HHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-hhhh--
Confidence            33444433 34 789999999999999988988764     468899999999999999999999999977 2 2222  


Q ss_pred             HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC-CcHH
Q 043116          153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG-TNDK  231 (482)
Q Consensus       153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~-~~~~  231 (482)
                         +...|.++| +..++.-...+-++|..+...++       .+.+..+..-+.++++.+|+.++..|..-... ..+.
T Consensus       101 ---iaDvL~QlL-qtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~kl~~l~~~~  169 (507)
T 3u0r_A          101 ---VADILTQLL-QTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEV  169 (507)
T ss_dssp             ---HHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHGGGSCTTT
T ss_pred             ---HHHHHHHHH-hccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHHHHhhcchhh
Confidence               355778888 56666556666677777766543       46666666666667888999988888643311 1111


Q ss_pred             HHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhc------CCCchhHHHHHHH
Q 043116          232 IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLI------HNHNKSIKKEVCW  304 (482)
Q Consensus       232 ~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~------~~~~~~v~~~a~~  304 (482)
                      ...-.+.-++..+.+.|.+-+..--.-.+.+|..+-... ....+.+     ++.+.....      .. |.+.-.....
T Consensus       170 l~~E~E~~i~~~ikK~L~DVT~~EF~L~m~lL~~lkl~~t~~g~qeL-----v~ii~eQa~L~~~f~~s-D~e~vdRlI~  243 (507)
T 3u0r_A          170 LTKEVEELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQL-----VELVAEQADLEQTFNPS-DPDCVDRLLQ  243 (507)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHTSGGGSSHHHHHHH-----HHHHHHHHTTTSCCCSS-CHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhcccccCchHHHHH-----HHHHHHHHhccCCCCCc-CHHHHHHHHH
Confidence            111222234456666775544433333445554443322 2222222     222332211      12 3333333333


Q ss_pred             HHHHHh----c--CCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHHHHHHHhhcCCC-HHHHHHHHHcCChHHHHhcC
Q 043116          305 IISNIT----A--GNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAAWVISNATSGGT-HEQIKHLVREGCVKPLCDLL  376 (482)
Q Consensus       305 ~L~nl~----~--~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~~aL~~l~~~~~-~~~~~~l~~~~~l~~L~~ll  376 (482)
                      ++..-.    .  .+.....++.+ .++|.+-.+-.. +.++.+...+.++..++.++. .+....++. -+++.|...+
T Consensus       244 C~~~ALP~FS~~v~StkFv~y~~~-kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~-~iy~~L~~ym  321 (507)
T 3u0r_A          244 CTRQAVPLFSKNVHSTRFVTYFCE-QVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLR-KLFDKLLEYM  321 (507)
T ss_dssp             HHHHHGGGCBTTBCCHHHHHHHHH-HTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHH-HHHHHHHTTS
T ss_pred             HHHHHHHHhccCCChHHHHHHHHH-hhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHH-HHHHHHHHHC
Confidence            332222    2  34555555555 477755433332 223478888999999987765 222222111 1334444443


Q ss_pred             CCC-------------CH----HHHHHHHHHHHHHHHhchhc
Q 043116          377 PCP-------------DP----QIVTVCLIGLENILKVGEAE  401 (482)
Q Consensus       377 ~~~-------------~~----~v~~~~l~~L~~l~~~~~~~  401 (482)
                      -.+             ++    ..++..+-++..+.+..+..
T Consensus       322 P~~p~~~~~~~~~~~~~p~l~fS~vECLLy~fH~L~~k~P~~  363 (507)
T 3u0r_A          322 PLPPEEAENGENAGNEEPKLQFSYVECLLYSFHQLGRKLPDF  363 (507)
T ss_dssp             CCCC--------------CCCHHHHHHHHHHHHHHHTTCTHH
T ss_pred             CCCcccccccccccccCcccchhHHHHHHHHHHHHhhhChhh
Confidence            211             12    24566777777777765553

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=96.29  E-value=0.073  Score=45.80  Aligned_cols=175  Identities=10%  Similarity=0.039  Sum_probs=110.8

Q ss_pred             CcHHHHHHHHhCcHHHHHHhhCC-----------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCch
Q 043116          228 TNDKIQAVIEAGVCPRLVKLLGH-----------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNK  296 (482)
Q Consensus       228 ~~~~~~~~~~~~~l~~L~~ll~~-----------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~  296 (482)
                      +....+.+ ..+++..|+..|..           .+......++.||..++.........+-..+.+..+...+.++ ++
T Consensus        33 ~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~-~~  110 (233)
T 2f31_A           33 PVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-VP  110 (233)
T ss_dssp             CHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTT-SH
T ss_pred             CcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCC-Cc
Confidence            33444445 34455555555522           1345678899999999875444444444567889999999888 99


Q ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHcCC-hHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116          297 SIKKEVCWIISNITAGNREQIQAVIDAGL-IGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL  375 (482)
Q Consensus       297 ~v~~~a~~~L~nl~~~~~~~~~~l~~~~~-i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  375 (482)
                      .+|..+...|..+|..+..        .+ .+.+++.+..               ....         -+..-+..+++.
T Consensus       111 ~~r~~~leLL~~lc~~~~~--------~G~~~~VL~Al~~---------------~~~~---------~e~~RF~~lv~~  158 (233)
T 2f31_A          111 NMMIDAAKLLSALCILPQP--------EDMNERVLEAMTE---------------RAEM---------DEVERFQPLLDG  158 (233)
T ss_dssp             HHHHHHHHHHHHHHTCSSS--------SCHHHHHHHHHHH---------------HHHH---------HTSCTTHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCCC--------CChHHHHHHHHHH---------------HHHh---------CCcchHHHHHHH
Confidence            9999999999888863221        12 3444444432               1000         012234445555


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHH
Q 043116          376 LP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSV  442 (482)
Q Consensus       376 l~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~  442 (482)
                      ++ +.+.+.+..++..+..++...+...      ..-..+..|...|..+.+..+....++++...-.
T Consensus       159 l~~~~~~e~~~~~m~lIN~li~~~~dl~------~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~Qi~  220 (233)
T 2f31_A          159 LKSGTSIALKVGCLQLINALITPAEELD------FRVHIRSELMRLGLHQVLQELREIENEDMKVQLC  220 (233)
T ss_dssp             TSTTSCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HhcCChHHHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHCChHHHHHHHhccCCHHHHHHHH
Confidence            55 4667888888888888887654322      1234566778899999999998888888765543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.27  E-value=0.0023  Score=55.49  Aligned_cols=89  Identities=16%  Similarity=0.191  Sum_probs=52.1

Q ss_pred             HHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116          245 VKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAG  324 (482)
Q Consensus       245 ~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  324 (482)
                      ..+++++++.||..++..+                  ..+.+..++.++ ++.||..++..+                  
T Consensus       152 ~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll~D~-d~~VR~aaa~~l------------------  194 (244)
T 1lrv_A          152 FRFMRDEDRQVRKLVAKRL------------------PEESLGLMTQDP-EPEVRRIVASRL------------------  194 (244)
T ss_dssp             GGTTTCSCHHHHHHHHHHS------------------CGGGGGGSTTCS-SHHHHHHHHHHC------------------
T ss_pred             HHHHcCCCHHHHHHHHHcC------------------CHHHHHHHHcCC-CHHHHHHHHHhC------------------
Confidence            3455566666666665531                  012233455555 677777666542                  


Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHH
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIG  390 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~  390 (482)
                      ..+.|..++.++++.++..++..+.                   .+.|..+ +++++.|+..+...
T Consensus       195 ~~~~L~~Ll~D~d~~VR~~aa~~l~-------------------~~~L~~L-~D~~~~VR~aa~~~  240 (244)
T 1lrv_A          195 RGDDLLELLHDPDWTVRLAAVEHAS-------------------LEALREL-DEPDPEVRLAIAGR  240 (244)
T ss_dssp             CGGGGGGGGGCSSHHHHHHHHHHSC-------------------HHHHHHC-CCCCHHHHHHHHCC
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHcCC-------------------HHHHHHc-cCCCHHHHHHHHHH
Confidence            1244566677777778777776642                   2445556 77888888776543

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.23  E-value=0.0015  Score=56.69  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=37.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCC
Q 043116           34 AGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG  113 (482)
Q Consensus        34 ~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g  113 (482)
                      .+++++++.++..++..+      .             ...+..++++++ +.||..++..|.                 
T Consensus        57 ~ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~~D~~-~~VR~~aA~~L~-----------------   99 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS------P-------------VEALTPLIRDSD-EVVRRAVAYRLP-----------------   99 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS------C-------------GGGGGGGTTCSS-HHHHHHHHTTSC-----------------
T ss_pred             HHhcCCCHHHHHHHHHhC------C-------------HHHHHHHccCcC-HHHHHHHHHHCC-----------------
Confidence            334677788887777642      0             122556666666 677777664310                 


Q ss_pred             ChHHHHHhhCCCCHHHHHHHHH
Q 043116          114 AVPIFVKLLASPSDDVREQAVW  135 (482)
Q Consensus       114 ~i~~L~~ll~~~~~~~~~~a~~  135 (482)
                       .+.|..++.++++.+|..+..
T Consensus       100 -~~~L~~ll~D~d~~VR~~aA~  120 (244)
T 1lrv_A          100 -REQLSALMFDEDREVRITVAD  120 (244)
T ss_dssp             -SGGGGGTTTCSCHHHHHHHHH
T ss_pred             -HHHHHHHHcCCCHHHHHHHHH
Confidence             134555666666666666555

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=96.21  E-value=0.15  Score=43.10  Aligned_cols=142  Identities=12%  Similarity=0.077  Sum_probs=100.0

Q ss_pred             HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHH-HhccCChhHHHHHHHHHHHhcc-CCcHHHHHHH
Q 043116          159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQ-LIRSNDEKVLTDACRALAYLAD-GTNDKIQAVI  236 (482)
Q Consensus       159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~-ll~~~~~~~~~~~l~~L~~l~~-~~~~~~~~~~  236 (482)
                      .+...|-+++..+++..|+..|..+ .        .....++.+.. +...++..|+..+..++..++. ..++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            3444454666668888888888777 2        12567888887 6667789999999999998884 3332      


Q ss_pred             HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc-CchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH
Q 043116          237 EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC-GALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE  315 (482)
Q Consensus       237 ~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~-~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~  315 (482)
                        ..++.+.....+++..+|..|...+.--+.. +...   .+. -+++.+-.+..++ +..||+..+|.|..++..+|+
T Consensus       139 --~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~-~~~k---~dp~~ll~iL~~L~~D~-s~yVrKSVan~LrD~SK~~Pd  211 (240)
T 3l9t_A          139 --KALPIIDEWLKSSNLHTRRAATEGLRIWTNR-PYFK---ENPNEAIRRIADLKEDV-SEYVRKSVGNALRDISKKFPD  211 (240)
T ss_dssp             --TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGS-TTTT---TCHHHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             --HHHHHHHHHhcCCCHHHHHHHHHhhHHHhcc-chhh---cCHHHHHHHHHHhcCCh-HHHHHHHHHHHHHHHhhhCHH
Confidence              2467888999999999999998876543321 1100   001 1344455555555 899999999999999999999


Q ss_pred             HHHHHHH
Q 043116          316 QIQAVID  322 (482)
Q Consensus       316 ~~~~l~~  322 (482)
                      .+..+++
T Consensus       212 ~V~~~~~  218 (240)
T 3l9t_A          212 LVKIELK  218 (240)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8777765

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=95.90  E-value=0.33  Score=41.08  Aligned_cols=145  Identities=17%  Similarity=0.059  Sum_probs=103.9

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhC-CChhhH
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAG-DSSRCR  148 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~-~~~~~~  148 (482)
                      .++....+.+++. .++|..|+..|+.. ...+         ..++.+.. +..+++-.+++.+..++..++. ..++. 
T Consensus        72 ~~~la~~L~~~~~-deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDV-YQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSS-HHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcc-hHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            3455566667777 79999999988887 3111         24566666 5667889999999999999984 33321 


Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~  228 (482)
                             .++.+..-. .+++..+++.|+..+.--+.. + ........++|.+-.+..+++.-|+..+.+.|..++..+
T Consensus       140 -------~l~~~~~W~-~d~n~~VRR~Ase~~rpW~~~-~-~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 -------ALPIIDEWL-KSSNLHTRRAATEGLRIWTNR-P-YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             -------THHHHHHHH-HCSSHHHHHHHHHHTCSGGGS-T-TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHh-cCCCHHHHHHHHHhhHHHhcc-c-hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                   345555555 788889999888776543332 1 122333567888888888899999999999999999998


Q ss_pred             cHHHHHHHH
Q 043116          229 NDKIQAVIE  237 (482)
Q Consensus       229 ~~~~~~~~~  237 (482)
                      ++....+++
T Consensus       210 Pd~V~~~~~  218 (240)
T 3l9t_A          210 PDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            877665554

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=95.79  E-value=0.46  Score=50.74  Aligned_cols=173  Identities=15%  Similarity=0.158  Sum_probs=112.8

Q ss_pred             hHHHHHHHcch---hhhhHHHHHHHHHHHhhc----CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116          157 LIPLLAELNEH---AKLSMLRTATWTLSNFCR----GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN  229 (482)
Q Consensus       157 i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~  229 (482)
                      +..+..++...   .++.++..+..+++.+..    ..+.........+...+.+.+...+.+-+...+.+|+|+...  
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~p--  470 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQP--  470 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCG--
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCCh--
Confidence            33445555322   234455555555555543    334444455667777777888888888899999999999842  


Q ss_pred             HHHHHHHHhCcHHHHHHhhCC-------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHH
Q 043116          230 DKIQAVIEAGVCPRLVKLLGH-------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKE  301 (482)
Q Consensus       230 ~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~  301 (482)
                               ..++.+.+++..       ....++..|+++|..++...+...+        +.++.+.. ..+++++|..
T Consensus       471 ---------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          471 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChHHHHH
Confidence                     235677777632       2346888999999999976655433        34566663 3348899999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHH
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHE  358 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~  358 (482)
                      |+..|.... .+..         .+..+...+. +.+.+|...+...|.+++....|.
T Consensus       534 A~~~Lm~t~-P~~~---------~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P~  581 (1056)
T 1lsh_A          534 SCIVFFESK-PSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPE  581 (1056)
T ss_dssp             HHHHHHHTC-CCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHC-cCHH---------HHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCcc
Confidence            988885432 2333         3334444454 478899999999999998876653

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.57  E-value=0.98  Score=40.34  Aligned_cols=186  Identities=11%  Similarity=0.066  Sum_probs=106.5

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCC----hHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChh
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGA----VPIFVKLLA-SPSDDVREQAVWALGNVAGDSSR  146 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~----i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~  146 (482)
                      +..+.++++=+  .+.+.-++..+.-.+. .+.....+.+...    +..+...+. ...+..+..++++++|+.... .
T Consensus       105 l~~l~kil~WP--~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~-~  180 (304)
T 3ebb_A          105 LQILWKAINCP--EDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQ-A  180 (304)
T ss_dssp             HHHHHHHHTSC--TTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSH-H
T ss_pred             HHHHHHHHcCC--HHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCc-h
Confidence            45555555322  2455666666666655 5555555544322    223344443 245667889999999998554 4


Q ss_pred             hHHHHHHhCChHHHHHHHc---chhhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhc-cCChhHHHHHHHHH
Q 043116          147 CRDFVLSQGALIPLLAELN---EHAKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIR-SNDEKVLTDACRAL  221 (482)
Q Consensus       147 ~~~~~~~~~~i~~l~~~l~---~~~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L  221 (482)
                      .++.+..  ....++..+.   .+.+..++..++..+.|++... ..........++..+..++. ..|++....++-+|
T Consensus       181 g~~~l~~--~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvAL  258 (304)
T 3ebb_A          181 GQKLMMS--QRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVAL  258 (304)
T ss_dssp             HHHHHHH--THHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            5565554  2344444442   2346678888888888888643 11222333345555556665 45889999999999


Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHH
Q 043116          222 AYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI  263 (482)
Q Consensus       222 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L  263 (482)
                      +++...+.+..+.....++-..+-+..+...+.-...+++.+
T Consensus       259 GtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~  300 (304)
T 3ebb_A          259 GTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFI  300 (304)
T ss_dssp             HHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHH
T ss_pred             HHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHH
Confidence            999977655444333345555555555443333233344433

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=95.53  E-value=1.7  Score=47.34  Aligned_cols=283  Identities=12%  Similarity=0.088  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hh-CCCCHHHHHHHHHHHHHhhCC-----ChhhHHHHHHhCCh
Q 043116           85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LL-ASPSDDVREQAVWALGNVAGD-----SSRCRDFVLSQGAL  157 (482)
Q Consensus        85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll-~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~~~i  157 (482)
                      ++.|.+|-..|..+-. ++         .....+.. +. .+.+..+|..|+.+|.+....     +++.+..+.+    
T Consensus        27 ~~~r~~Ae~~L~~~~~-~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~----   92 (1204)
T 3a6p_A           27 QRYRLEALKFCEEFKE-KC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKN----   92 (1204)
T ss_dssp             HHHHHHHHHHHHHHHH-HC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHH----
T ss_pred             hHHHHHHHHHHHHHHh-Cc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHH----
Confidence            6788888888877744 22         13333333 33 456789999999999988632     2233333322    


Q ss_pred             HHHHHHHcch------hhhhHHHHHHHHHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccC---
Q 043116          158 IPLLAELNEH------AKLSMLRTATWTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADG---  227 (482)
Q Consensus       158 ~~l~~~l~~~------~~~~~~~~a~~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~---  227 (482)
                       .++..+...      .+..++...+.++..+.... |    .....+++.++.++.+ ++.....++.+|..+++.   
T Consensus        93 -~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p----~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~  166 (1204)
T 3a6p_A           93 -SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP----QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVT  166 (1204)
T ss_dssp             -HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST----TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc----ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHcc
Confidence             344444222      34667777888888888764 3    2246788888888876 555677788888777632   


Q ss_pred             ----CcHHHHH---HHHh---CcHHHHHHhhCC-------------------CChhhHHHHHHHHhHhhcCChhhHHHHH
Q 043116          228 ----TNDKIQA---VIEA---GVCPRLVKLLGH-------------------RSRLVLTAALRTIGNIVTGDDFQTQCII  278 (482)
Q Consensus       228 ----~~~~~~~---~~~~---~~l~~L~~ll~~-------------------~~~~v~~~a~~~L~~l~~~~~~~~~~l~  278 (482)
                          ...+...   .+..   .++..+..++.+                   .+..++..++.++.+...--+.  ..+.
T Consensus       167 ~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~  244 (1204)
T 3a6p_A          167 FQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SHIT  244 (1204)
T ss_dssp             SCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HHHH
Confidence                1111111   1111   223333333322                   1234667778887766543221  2233


Q ss_pred             hcC--chHHHHHHhcCCCchhHHHHHHHHHHHHhcCC--HHHHHHHHHc---CChHHHHHHHh--------cCChhHHHH
Q 043116          279 NCG--ALRYLLGLLIHNHNKSIKKEVCWIISNITAGN--REQIQAVIDA---GLIGPIVNLLQ--------DAEFGTKKE  343 (482)
Q Consensus       279 ~~~--~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~--~~~~~~l~~~---~~i~~L~~ll~--------~~~~~~~~~  343 (482)
                      +..  +++.+..++.   ++.++..|+.+|..++...  ++....++..   ..+..++....        +.+.++.+.
T Consensus       245 ~~~~~ll~~l~~~l~---~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~  321 (1204)
T 3a6p_A          245 AENCKLLEILCLLLN---EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKR  321 (1204)
T ss_dssp             TTTSHHHHHHHHGGG---CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHH
T ss_pred             hccchHHHHHHHHcC---CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHH
Confidence            332  6777776655   4578999999999999732  3433333320   11234444432        223556666


Q ss_pred             HHHHHHHhhcCCCHHHHHHHHH-----------cCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          344 AAWVISNATSGGTHEQIKHLVR-----------EGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       344 a~~aL~~l~~~~~~~~~~~l~~-----------~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      .+..+..+..    . ...+..           .++++.+..+..+++..+...++.....+++.
T Consensus       322 l~~ll~~lg~----~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          322 LCQVLCALGN----Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHH----H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHH----H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            6666666652    1 111111           13466677777777777666666655555443

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.02  E-value=0.94  Score=38.78  Aligned_cols=96  Identities=14%  Similarity=0.136  Sum_probs=63.7

Q ss_pred             HHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCChHhHHHHHh-CCCh
Q 043116           47 ATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----E------DYPQLQFEAARALTNIASGTSENTKVAID-HGAV  115 (482)
Q Consensus        47 a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i  115 (482)
                      .+..|.-.+...+..-++.+ ..+++..|+..|..    +      .+.+.+..++.||..+.. +....+.++. .+.+
T Consensus        21 ~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn-~~~G~~~vl~~~~~i   98 (233)
T 2f31_A           21 CLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI   98 (233)
T ss_dssp             HHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTS-SHHHHHHHHTSSSHH
T ss_pred             HHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhC-ChHHHHHHHcCcHHH
Confidence            34444433343322224445 35566666666542    1      115678889999999987 5555555554 4678


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCC
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDS  144 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~  144 (482)
                      ..+...+.++++.++..++..|..+|..+
T Consensus        99 ~~l~~~L~s~~~~~r~~~leLL~~lc~~~  127 (233)
T 2f31_A           99 LLLVRAMDPAVPNMMIDAAKLLSALCILP  127 (233)
T ss_dssp             HHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence            99999999999999999999999988544

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.01  E-value=0.16  Score=45.46  Aligned_cols=111  Identities=12%  Similarity=0.057  Sum_probs=69.3

Q ss_pred             HHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhC--CChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHH
Q 043116           75 FVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDH--GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVL  152 (482)
Q Consensus        75 L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  152 (482)
                      +...+.++..+..+.-++++++|+.. ++..+..+...  .+++.+...+.+.+..++..+...+.|++......+..-.
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            33444444336679999999999998 67777776643  2445555566667899999999999999832100000000


Q ss_pred             HhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          153 SQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       153 ~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      ...++..+..++....|.+....++-+|.+|...
T Consensus       231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~  264 (304)
T 3ebb_A          231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISD  264 (304)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhC
Confidence            0112334444554445677777788888888765

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.88  E-value=0.51  Score=42.11  Aligned_cols=155  Identities=14%  Similarity=0.166  Sum_probs=109.1

Q ss_pred             HHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHH
Q 043116          222 AYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKE  301 (482)
Q Consensus       222 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~  301 (482)
                      .++.-++++.++-++..+++..+...+..++.++....+..|...+... .... .--...+|.++..+.-.++.++...
T Consensus       267 L~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~~-t~L~e~LPFi~~~i~~h~eDdvvYS  344 (619)
T 3c2g_A          267 LGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALAK-TPLENILPFLLRLIEIHPDDEVIYS  344 (619)
T ss_dssp             HHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGGT-SCCTTHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHhh-ccccccchHHHHHhccCCCcceEEe
Confidence            4555677778888999999999999999999999999999998887532 2111 1112567888888875558889999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC-------ChhHHHHHHHHHHHhhc-------------CC------
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA-------EFGTKKEAAWVISNATS-------------GG------  355 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~-------~~~~~~~a~~aL~~l~~-------------~~------  355 (482)
                      ..+.|+|...+........+..|.++.|...+...       +..-++.||..++|...             +|      
T Consensus       345 GTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~G  424 (619)
T 3c2g_A          345 GTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTAG  424 (619)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCCC
T ss_pred             cchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccCC
Confidence            99999999998888777777899999999887521       22334445555554432             11      


Q ss_pred             --CHHHHHHHHHcCChHHHHhcCCC
Q 043116          356 --THEQIKHLVREGCVKPLCDLLPC  378 (482)
Q Consensus       356 --~~~~~~~l~~~~~l~~L~~ll~~  378 (482)
                        +..+...+++..++..|+..++-
T Consensus       425 ~~EqQQVckFIE~d~LKrLMtCLS~  449 (619)
T 3c2g_A          425 PNEKQQVCKFIEIDILKKLMSCLSC  449 (619)
T ss_dssp             HHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              22333444555667777777654

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.86  E-value=1.2  Score=41.25  Aligned_cols=156  Identities=13%  Similarity=0.114  Sum_probs=96.1

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----------CCChHHHHHHHHHHHHH
Q 043116           30 PTMVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----------EDYPQLQFEAARALTNI   98 (482)
Q Consensus        30 ~~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----------~~~~~v~~~a~~~L~~l   98 (482)
                      ..+++.|++.. ..-....+..|..-+...+..-++.+. .+++..|+..|..          ..+...+..+++||..+
T Consensus        69 ~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkal  147 (383)
T 3eg5_B           69 MMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF  147 (383)
T ss_dssp             HHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHH
Confidence            34566666442 222234566666555554333356666 5678888888741          11157888999999999


Q ss_pred             hCCChHhHHHHHh-CCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHHH----------hCChHHHHHHHc
Q 043116           99 ASGTSENTKVAID-HGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RC-RDFVLS----------QGALIPLLAELN  165 (482)
Q Consensus        99 ~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~~----------~~~i~~l~~~l~  165 (482)
                      .. +....+.++. ...+..|...+.+.++.++..++..|..+|.... .. ...+.+          ..-+..++..+.
T Consensus       148 mN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~  226 (383)
T 3eg5_B          148 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  226 (383)
T ss_dssp             TS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred             hc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence            86 5555555554 4678999999999999999999999999995543 21 222222          223555666664


Q ss_pred             chhhhhHHHHHHHHHHHhhcCC
Q 043116          166 EHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       166 ~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      ...+.+....++..+..+....
T Consensus       227 ~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          227 SGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHHHHHHHHHcCC
Confidence            3344455555555555555544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.71  E-value=0.62  Score=43.28  Aligned_cols=160  Identities=16%  Similarity=0.110  Sum_probs=108.9

Q ss_pred             hhHHHHHhcCchHHHHHHhcC----------CCchhHHHHHHHHHHHHhcCCHHHHHHHHH-cCChHHHHHHHhcCChhH
Q 043116          272 FQTQCIINCGALRYLLGLLIH----------NHNKSIKKEVCWIISNITAGNREQIQAVID-AGLIGPIVNLLQDAEFGT  340 (482)
Q Consensus       272 ~~~~~l~~~~~i~~L~~ll~~----------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~~  340 (482)
                      .-.+.+. .+|+..|+.+|..          ..+......+..||..++.. ...+..++. ...+..+...+.+..+.+
T Consensus       101 sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~-~~G~~~vl~~~~~i~~l~~~L~s~~~~~  178 (383)
T 3eg5_B          101 SWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNN-KFGIKTMLETEEGILLLVRAMDPAVPNM  178 (383)
T ss_dssp             HHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSS-HHHHHHHHTCSSHHHHHHHTCCTTSHHH
T ss_pred             HHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcc-hhhHHHHHcChHHHHHHHHHhCCCchHH
Confidence            4444454 5667777777742          11446778888899888753 455666664 667889999999999999


Q ss_pred             HHHHHHHHHHhhcCCCHHH-HHHH----------HHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhchhccccCCCC
Q 043116          341 KKEAAWVISNATSGGTHEQ-IKHL----------VREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVGEAEKNTDNIG  408 (482)
Q Consensus       341 ~~~a~~aL~~l~~~~~~~~-~~~l----------~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~  408 (482)
                      +..++..|..++....++. ...+          .+..-+..+++.++. .+.+.+..++..+..++...+...      
T Consensus       179 ~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~------  252 (383)
T 3eg5_B          179 MIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELD------  252 (383)
T ss_dssp             HHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHH------
T ss_pred             HHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHH------
Confidence            9999999988776543111 1111          223457778888876 577888888888888887654322      


Q ss_pred             cccHHHHHHHHhchHHHHHHhhcCCCHHHHH
Q 043116          409 DVNQYAQLVEEAEGLEKIENLQSHDNNDIHE  439 (482)
Q Consensus       409 ~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~  439 (482)
                      ..-.++..|...|..+.+..+-...++++..
T Consensus       253 ~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~  283 (383)
T 3eg5_B          253 FRVHIRSELMRLGLHQVLQELREIENEDMKV  283 (383)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred             HHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence            1234566778889999999887777766643

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=94.69  E-value=2.7  Score=38.99  Aligned_cols=175  Identities=10%  Similarity=0.072  Sum_probs=107.4

Q ss_pred             CCcHHHHHHHHhCcHHHHHHhhCC----C-------ChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCc
Q 043116          227 GTNDKIQAVIEAGVCPRLVKLLGH----R-------SRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHN  295 (482)
Q Consensus       227 ~~~~~~~~~~~~~~l~~L~~ll~~----~-------~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~  295 (482)
                      .+....+.+. .+++..|+..|..    +       +......++.||..++.........+-..+.+..+...+.++ .
T Consensus        36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~-~  113 (386)
T 2bnx_A           36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-V  113 (386)
T ss_dssp             SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT-S
T ss_pred             CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCC-C
Confidence            3344555554 3455556555521    1       345778899999999875555544445567889999999887 8


Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116          296 KSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL  375 (482)
Q Consensus       296 ~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  375 (482)
                      +.++..+...|..+|.....       .|..+.+++.+..               ...         ..+..-+..+++.
T Consensus       114 ~~~r~~vleLL~alc~~~~~-------~G~~~~VL~Al~~---------------~~~---------~~e~~RF~~lv~~  162 (386)
T 2bnx_A          114 PNMMIDAAKLLSALCILPQP-------EDMNERVLEAMTE---------------RAE---------MDEVERFQPLLDG  162 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCSS-------TTHHHHHHHHHHH---------------HHH---------HHTSCTTHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCC-------CChHHHHHHHHHH---------------HHH---------hCchhhHHHHHHH
Confidence            99999999989888863221       0113333333331               100         0112234445555


Q ss_pred             CC-CCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHH
Q 043116          376 LP-CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEM  440 (482)
Q Consensus       376 l~-~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~  440 (482)
                      +. +.+.+.+..++..+..++...+...      ..-.++..|...|..+.+..+-...++++...
T Consensus       163 l~~~~~~e~~~a~m~lIN~lv~~~~dl~------~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q  222 (386)
T 2bnx_A          163 LKSGTSIALKVGCLQLINALITPAEELD------FRVHIRSELMRLGLHQVLQELREIENEDMKVQ  222 (386)
T ss_dssp             TSTTSCHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHHHHCCCCCHH------HHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence            54 5566788888888888886654422      12345667788888888888877777776444

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.32  E-value=4.3  Score=37.64  Aligned_cols=140  Identities=14%  Similarity=0.125  Sum_probs=83.3

Q ss_pred             HHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC----C------CChHHHHHHHHHHHHHhCCChHhHHHHH-hCCCh
Q 043116           47 ATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR----E------DYPQLQFEAARALTNIASGTSENTKVAI-DHGAV  115 (482)
Q Consensus        47 a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~----~------~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i  115 (482)
                      .+..|.-.+...+..-++.+. .+++..|+..|..    +      .+.+.+..++.||..+.. +....+.++ ..+++
T Consensus        25 ~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN-~~~Gl~~vl~~~~~i  102 (386)
T 2bnx_A           25 CLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMN-NKFGIKTMLETEEGI  102 (386)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTS-SHHHHHHHHHSSSHH
T ss_pred             HHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhC-CHHHHHHHHcCcHHH
Confidence            344444444433222245554 4566666666531    1      125678889999999987 555555555 44678


Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hh-HHHHH----------HhCChHHHHHHHcchhhhhHHHHHHHHHHHh
Q 043116          116 PIFVKLLASPSDDVREQAVWALGNVAGDSS-RC-RDFVL----------SQGALIPLLAELNEHAKLSMLRTATWTLSNF  183 (482)
Q Consensus       116 ~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~-~~~~~----------~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L  183 (482)
                      ..+...+.++++.++..++..|..+|..+. .. ...+.          +..-+..++..+..+.+.+....++..+..+
T Consensus       103 ~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~l  182 (386)
T 2bnx_A          103 LLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINAL  182 (386)
T ss_dssp             HHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            999999999999999999999998885443 22 22222          1123445565554444455555555555555


Q ss_pred             hcCCC
Q 043116          184 CRGKP  188 (482)
Q Consensus       184 ~~~~~  188 (482)
                      ....+
T Consensus       183 v~~~~  187 (386)
T 2bnx_A          183 ITPAE  187 (386)
T ss_dssp             HTTCS
T ss_pred             HCCCC
Confidence            55543

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=93.14  E-value=1  Score=39.60  Aligned_cols=136  Identities=13%  Similarity=0.068  Sum_probs=90.6

Q ss_pred             hhhHHHHHHHHhHhhcCChhhHHHHH-hcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH--cCChHHH
Q 043116          253 RLVLTAALRTIGNIVTGDDFQTQCII-NCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID--AGLIGPI  329 (482)
Q Consensus       253 ~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~L  329 (482)
                      ......|+-.|-.++..-....+.+- +...+..|+ +.... .+.++..|+.+|+.+.+.+|..+..+.+  ..++..+
T Consensus        42 ~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~-~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~l  119 (315)
T 3qml_C           42 IARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENL-PLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKI  119 (315)
T ss_dssp             HHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccC-ChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHH
Confidence            34566788888888764333333232 334444444 22334 6779999999999999999999888776  4556666


Q ss_pred             HHHHhc-------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC--CHHHHHHHHHHHHHHHH
Q 043116          330 VNLLQD-------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP--DPQIVTVCLIGLENILK  396 (482)
Q Consensus       330 ~~ll~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~~l~~L~~l~~  396 (482)
                      +.-|..       ...-+++.-+.+|.-|+... ..+     ....+..|.+++...  ++.++.+++..+..++.
T Consensus       120 f~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~-~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          120 MAALSNLNDSNHRSSNILIKRYLSILNELPVTS-EDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS-TTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHHHHhcCh-Hhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            655543       23456777888888888742 111     133556666666555  88999999999999986

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=93.12  E-value=12  Score=40.79  Aligned_cols=288  Identities=9%  Similarity=0.071  Sum_probs=161.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc-CCCChHHHHHHHHHHHHHhCC-----ChHhHHHHHhC
Q 043116           39 DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM-REDYPQLQFEAARALTNIASG-----TSENTKVAIDH  112 (482)
Q Consensus        39 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~-~~~~~~v~~~a~~~L~~l~~~-----~~~~~~~~~~~  112 (482)
                      .++..+..|-..|.++-...           +....+...|. ...++.+|..|+..|.+....     +++.+..+. .
T Consensus        25 ~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir-~   92 (1204)
T 3a6p_A           25 STQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLK-N   92 (1204)
T ss_dssp             CCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHH-H
T ss_pred             CChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHH-H
Confidence            36778888888888775542           13344444333 332389999999999987642     333443333 2


Q ss_pred             CChHHHHHhhCC---CCHHHHHHHHHHHHHhhCCC-h-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          113 GAVPIFVKLLAS---PSDDVREQAVWALGNVAGDS-S-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       113 g~i~~L~~ll~~---~~~~~~~~a~~~L~~l~~~~-~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                      .+++.+......   .+..++.....++..++... | ..      .++++.++..+..  +......++.+|..++.+.
T Consensus        93 ~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~W------p~ll~~L~~~~~~--~~~~~e~~L~iL~~L~Eev  164 (1204)
T 3a6p_A           93 SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQHW------PDMLIELDTLSKQ--GETQTELVMFILLRLAEDV  164 (1204)
T ss_dssp             HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHHHHHT--CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcccc------hHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHH
Confidence            344444443221   45788888888888887321 1 11      1346667776632  3344666777888776541


Q ss_pred             ---CCCChhh-----------hhhHHHHHHHHhcc-------------------CChhHHHHHHHHHHHhccCCcHHHHH
Q 043116          188 ---PQPPFNQ-----------IRPALRVLAQLIRS-------------------NDEKVLTDACRALAYLADGTNDKIQA  234 (482)
Q Consensus       188 ---~~~~~~~-----------~~~~~~~L~~ll~~-------------------~~~~~~~~~l~~L~~l~~~~~~~~~~  234 (482)
                         .......           ...+++.+..++..                   .+..+...++.++.+....-+.  ..
T Consensus       165 ~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~  242 (1204)
T 3a6p_A          165 VTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSM--SH  242 (1204)
T ss_dssp             HTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCH--HH
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCH--HH
Confidence               1111110           11344444444432                   1244667777787766654332  22


Q ss_pred             HHHhC--cHHHHHHhhCCCChhhHHHHHHHHhHhhcCC--hhhHHHHHhc---CchHHHHHHhc-------CCCchhHHH
Q 043116          235 VIEAG--VCPRLVKLLGHRSRLVLTAALRTIGNIVTGD--DFQTQCIINC---GALRYLLGLLI-------HNHNKSIKK  300 (482)
Q Consensus       235 ~~~~~--~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~---~~i~~L~~ll~-------~~~~~~v~~  300 (482)
                      +.+..  +++.+..++.  ++.++..|+.||..++...  +.....++..   ..+..++..+.       +.++.++.+
T Consensus       243 i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k  320 (1204)
T 3a6p_A          243 ITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLK  320 (1204)
T ss_dssp             HHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHH
T ss_pred             HHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHH
Confidence            33332  6677776665  5679999999999999743  2221122211   11334454432       111456777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHH-----------cCChHHHHHHHhcCChhHHHHHHHHHHHhhcC
Q 043116          301 EVCWIISNITAGNREQIQAVID-----------AGLIGPIVNLLQDAEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       301 ~a~~~L~nl~~~~~~~~~~l~~-----------~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~  354 (482)
                      ..+..+..+..   . ...++.           .++++.++.+..+++..+-..++.....+...
T Consensus       321 ~l~~ll~~lg~---~-l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~  381 (1204)
T 3a6p_A          321 RLCQVLCALGN---Q-LCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFRH  381 (1204)
T ss_dssp             HHHHHHHHHHH---H-HHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHH---H-HHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHHHHhc
Confidence            77777777762   1 222222           13577777777777777777777766666553

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=93.09  E-value=2.2  Score=45.53  Aligned_cols=135  Identities=13%  Similarity=0.145  Sum_probs=83.6

Q ss_pred             hhHHHHHHHHhcc----CChhHHHHHHHHHHHhcc----CCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhh
Q 043116          196 RPALRVLAQLIRS----NDEKVLTDACRALAYLAD----GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV  267 (482)
Q Consensus       196 ~~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~----~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~  267 (482)
                      ...+..+..++.+    .++.++..++.+++.+..    ..+......+ ..+...+...+...+..-+..++++|+|+.
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v-~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g  468 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL-QPLHDLLSQSSDRAKEEEIVLALKALGNAG  468 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH-HHHHHHHHHHHhcCChHHHHHHHHHhhccC
Confidence            3455566666654    456777778888777662    1110000000 012334445556667777888999999997


Q ss_pred             cCChhhHHHHHhcCchHHHHHHhcC------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cCChh
Q 043116          268 TGDDFQTQCIINCGALRYLLGLLIH------NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DAEFG  339 (482)
Q Consensus       268 ~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~~~~  339 (482)
                      .  +.         .++.|.+++..      +....++..|+|+|.++....++..+        +.+++++.  ..+++
T Consensus       469 ~--p~---------~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v~--------~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          469 Q--PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             C--GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred             C--hh---------HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHHH--------HHHHHHhcCCCCChH
Confidence            5  32         34556666542      21457889999999999876665433        34566663  56889


Q ss_pred             HHHHHHHHHHH
Q 043116          340 TKKEAAWVISN  350 (482)
Q Consensus       340 ~~~~a~~aL~~  350 (482)
                      +|..|+..|..
T Consensus       530 vRiaA~~~Lm~  540 (1056)
T 1lsh_A          530 LRIRSCIVFFE  540 (1056)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99888887754

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=93.00  E-value=0.25  Score=38.11  Aligned_cols=79  Identities=8%  Similarity=0.122  Sum_probs=57.4

Q ss_pred             ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHh-chHHHHHHhhcCC--------CHHHH
Q 043116          368 CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEA-EGLEKIENLQSHD--------NNDIH  438 (482)
Q Consensus       368 ~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~l~~l~~~~--------~~~v~  438 (482)
                      +++.|..-+.+.++.++.+++.+|..++..+..           .|...+++. ..++.+.+....+        ...|+
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~-----------~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR  118 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGS-----------EFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVR  118 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCH-----------HHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHH
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCH-----------HHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHH
Confidence            677888888888999999999999999876533           245554433 3444444444333        37899


Q ss_pred             HHHHHHHHHhcCCCCCCCC
Q 043116          439 EMSVKILETYWCGRVVGPQ  457 (482)
Q Consensus       439 ~~a~~~l~~~~~~~~~~~~  457 (482)
                      ..|..+++-+|+++...+.
T Consensus       119 ~~AkEl~~ll~d~~~~~~~  137 (140)
T 1vdy_A          119 ETAHETISAIFSEENGSGP  137 (140)
T ss_dssp             HHHHHHHHHHTCCSSCCCC
T ss_pred             HHHHHHHHHHhCcCCCCCC
Confidence            9999999999998887654

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=92.27  E-value=5.2  Score=34.59  Aligned_cols=99  Identities=8%  Similarity=0.064  Sum_probs=70.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHh
Q 043116           32 MVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAID  111 (482)
Q Consensus        32 l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~  111 (482)
                      +++..+......+...+.....++......    +. ..+++.++.+..+++ .++|...+..+...+...++...    
T Consensus        20 lln~A~~~~~~~kl~~L~qa~el~~~~dp~----ll-~~~l~~il~~~~~~~-~~vrk~~~~Fi~e~~~~k~~l~~----   89 (257)
T 3gs3_A           20 WCNELVIASPSTKCELLAKVQETVLGSCAE----LA-EEFLESVLSLAHDSN-MEVRKQVVAFVEQVCKVKVELLP----   89 (257)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTTTTGG----GH-HHHHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH----
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHccCHh----HH-HHHHHHHHHhccCCh-HHHHHHHHHHHHHHHHHHHHHHH----
Confidence            333333323368888999999987764221    12 336777888776766 89999999999998864444322    


Q ss_pred             CCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 043116          112 HGAVPIFVKLLASPSDDVREQAVWALGNVA  141 (482)
Q Consensus       112 ~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~  141 (482)
                       ..++.|..+++++++.+...++.+..++.
T Consensus        90 -~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY  118 (257)
T 3gs3_A           90 -HVINVVSMLLRDNSAQVIKRVIQACGSIY  118 (257)
T ss_dssp             -HHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence             35678888899889999988888877773

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=91.50  E-value=4.1  Score=35.82  Aligned_cols=151  Identities=13%  Similarity=0.120  Sum_probs=97.8

Q ss_pred             hhHHHHHHHHhccC------ChhHHHHHHHHHHHhccCCcHHHHHHH-HhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          196 RPALRVLAQLIRSN------DEKVLTDACRALAYLADGTNDKIQAVI-EAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       196 ~~~~~~L~~ll~~~------~~~~~~~~l~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                      ..-+..+..++.++      +.+....++..|..++..-....+..- +...+..|. +.....+.+++.|.++|+...+
T Consensus        21 s~~F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLR   99 (315)
T 3qml_C           21 SSDFKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLR   99 (315)
T ss_dssp             HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHc
Confidence            34444555666654      455677788888888854333333332 334445554 3344567799999999999999


Q ss_pred             CChhhHHHHHhc--CchHHHHHHhcC----C--CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--Ch
Q 043116          269 GDDFQTQCIINC--GALRYLLGLLIH----N--HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EF  338 (482)
Q Consensus       269 ~~~~~~~~l~~~--~~i~~L~~ll~~----~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~  338 (482)
                      ++|.....+.+.  .++..+..-|..    .  ....+.+.-+.+|.-+...+..    + ....+..|.+++...  ++
T Consensus       100 NNP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~----F-~~~~m~~L~~ly~~~~~d~  174 (315)
T 3qml_C          100 NNPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED----L-PIYSTVVLQNVYERNNKDK  174 (315)
T ss_dssp             TCHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT----C---CCHHHHHHHHHHTTTCH
T ss_pred             cCHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh----h-hhccHHHHHHHHccCCCCH
Confidence            999888877653  445444443332    1  1346777888888888764321    1 234678888888766  89


Q ss_pred             hHHHHHHHHHHHhh
Q 043116          339 GTKKEAAWVISNAT  352 (482)
Q Consensus       339 ~~~~~a~~aL~~l~  352 (482)
                      .++..++..+..+.
T Consensus       175 ~~k~Kvl~li~d~f  188 (315)
T 3qml_C          175 QLQIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            99999988888776

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=90.50  E-value=0.45  Score=36.94  Aligned_cols=73  Identities=7%  Similarity=0.016  Sum_probs=58.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      .+..+..-+.+.++.++..|+..|-.++.++.+.....+....+++.+..+++..++.|+.+++..+......
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~  115 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDE  115 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHH
Confidence            4555666677889999999999999999988877776666666777777777777889999999988877654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=90.34  E-value=11  Score=34.72  Aligned_cols=89  Identities=7%  Similarity=0.101  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHh
Q 043116           42 KVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKL  121 (482)
Q Consensus        42 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  121 (482)
                      ..+...+.-..+++.+. .+.    .-.++++.++.+-.+++ .++|...+..|...+....+...     .+++.|..+
T Consensus        40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~~d~~-~~vRk~~a~FieEa~~~~~el~~-----~~l~~L~~L  108 (386)
T 3o2t_A           40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQADKS-IEVRKFVIGFIEEACKRDIELLL-----KLIANLNML  108 (386)
T ss_dssp             THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGGGCSC-HHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHH
Confidence            46888888888876653 221    23568999999988888 89999999999998864444422     356788888


Q ss_pred             hCCCCHHHHHHHHHHHHHhh
Q 043116          122 LASPSDDVREQAVWALGNVA  141 (482)
Q Consensus       122 l~~~~~~~~~~a~~~L~~l~  141 (482)
                      +.++++.+...++.+..++.
T Consensus       109 L~d~d~~V~K~~I~~~tslY  128 (386)
T 3o2t_A          109 LRDENVNVVKKAILTMTQLY  128 (386)
T ss_dssp             HTCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHH
Confidence            88899999988888888773

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=89.85  E-value=0.65  Score=36.40  Aligned_cols=74  Identities=8%  Similarity=-0.068  Sum_probs=61.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..|..-+.+.++.++..|+..|-.++.++.+.+...+....+++.|+.++..      .++.|+.+++..+.......
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            455666667889999999999999999999988888887778888888888863      56789999999888887543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=89.64  E-value=1.2  Score=34.80  Aligned_cols=72  Identities=8%  Similarity=-0.076  Sum_probs=60.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHH
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILK  396 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~  396 (482)
                      ++..+..-+.+.++.++..|+..|-.++.++.+.+...+.+..+++.|..++..      .++.|+.+++..+.....
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            455666677889999999999999999999888888888888889999988874      467899999888877764

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=88.51  E-value=11  Score=32.43  Aligned_cols=140  Identities=16%  Similarity=0.160  Sum_probs=90.8

Q ss_pred             hHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhc
Q 043116          297 SIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDL  375 (482)
Q Consensus       297 ~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~l  375 (482)
                      +.|.....-+..++. .++....     .+++.++.+..+.+.++|+..+..+...+.. .++....     +++.|..+
T Consensus        30 ~~kl~~L~qa~el~~~~dp~ll~-----~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~-----~l~~L~~L   98 (257)
T 3gs3_A           30 STKCELLAKVQETVLGSCAELAE-----EFLESVLSLAHDSNMEVRKQVVAFVEQVCKV-KVELLPH-----VINVVSML   98 (257)
T ss_dssp             HHHHHHHHHHHHHHTTTTGGGHH-----HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHhHHH-----HHHHHHHHhccCChHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHH
Confidence            466666666666554 3343222     3666667766678899999999999888753 3333222     67788888


Q ss_pred             CCCCCHHHHHHHHHHHHHHHHhchhccccCCCC--cccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          376 LPCPDPQIVTVCLIGLENILKVGEAEKNTDNIG--DVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       376 l~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      +.++++.+.+++..+..+++...=..-......  ..+...+.+.  ...+.+.++..+.+..++-.+.+.+++..
T Consensus        99 l~d~d~~V~K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~--~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A           99 LRDNSAQVIKRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILS--LIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHH--HHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--HHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            888999999999988888876432221111000  0122333332  33566777788899999999999999865

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=88.18  E-value=0.91  Score=36.26  Aligned_cols=72  Identities=4%  Similarity=-0.021  Sum_probs=56.4

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHH
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILK  396 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~  396 (482)
                      ++..|.+-+.+.++.++..|+..|-.++.++.+.+...+....+++.|..++.. .++.|+.+++..+.....
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            455566667888999999999999999999888777676666777777777654 667899988887776654

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=87.78  E-value=2.7  Score=38.70  Aligned_cols=139  Identities=17%  Similarity=0.167  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC
Q 043116          298 IKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL  376 (482)
Q Consensus       298 v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll  376 (482)
                      .|.....-+..++. .++.    ++ .++++.++++-.+.+.++|+.++..|...+.. ..+....     +++.|..++
T Consensus        41 ~Kl~~L~q~~EL~l~~dps----Ll-~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~el~~~-----~l~~L~~LL  109 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT----LL-DNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIELLLK-----LIANLNMLL  109 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG----GG-GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGGGHHH-----HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH----HH-HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHHHHHH-----HHHHHHHHH
Confidence            44455555555433 2332    12 36888899888888999999999999988763 3333322     677888888


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhchhcc-ccCCCC-cccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          377 PCPDPQIVTVCLIGLENILKVGEAEK-NTDNIG-DVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       377 ~~~~~~v~~~~l~~L~~l~~~~~~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      .++++.+.+++..+..+++...-... ..++.. ..+...+.+.  ...+.+.++..+.|..++-.+.+.+++..
T Consensus       110 ~d~d~~V~K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~--~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          110 RDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVS--AMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             TCSSHHHHHHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH--HHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHH--HHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            88999999998888888774321111 100000 0122333332  23456666788899999999999999855

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=86.62  E-value=21  Score=33.52  Aligned_cols=236  Identities=13%  Similarity=0.036  Sum_probs=126.9

Q ss_pred             hHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhh
Q 043116          105 NTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFC  184 (482)
Q Consensus       105 ~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~  184 (482)
                      ..+..++...+..|+.++.++|+.-|...-.+|..+.+.-...|..+... +-..+.+.+.......-....+.++..+.
T Consensus       154 ~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~-i~nif~~fi~e~e~~nGIaeLLeilgSIi  232 (449)
T 2npp_B          154 IAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGSII  232 (449)
T ss_dssp             TGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHH-HHHHHHHHHHTCSCCSCHHHHHHHHHHHH
T ss_pred             hhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcccCCCCCHHHHHHHHHHHH
Confidence            34555666778899999999999999999999988875544455444332 23344555533333334556777777777


Q ss_pred             cCCC-CCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHH
Q 043116          185 RGKP-QPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRT  262 (482)
Q Consensus       185 ~~~~-~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~  262 (482)
                      .+-. ........-....|+.+..... .........|+......++.....+     +..|++.==..+..-...-+.-
T Consensus       233 nGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL~e  307 (449)
T 2npp_B          233 NGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFLNE  307 (449)
T ss_dssp             SSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHHHH
T ss_pred             hccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhcCcHhHHHH-----HHHHHHhCCCCCchHHHHHHHH
Confidence            6642 2222333344555666665544 2233445566666555555443321     2222222111222222223334


Q ss_pred             HhHhhcC-ChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHhc---
Q 043116          263 IGNIVTG-DDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQD---  335 (482)
Q Consensus       263 L~~l~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~~---  335 (482)
                      |..+... .+.....+. .-+...+...+.+. +..|...|.....|     +. +..++.   ..++|.+...+..   
T Consensus       308 leeile~~~~~ef~~i~-~~lF~~la~ci~S~-hfqVAErAL~~w~N-----~~-i~~li~~n~~~IlPii~p~L~~~s~  379 (449)
T 2npp_B          308 LEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWNN-----EY-IMSLISDNAAKILPIMFPSLYRNSK  379 (449)
T ss_dssp             HHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGGC-----HH-HHHHHHTTHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHhCCHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHCC-----HH-HHHHHHhchhhhHHhhHHHHHHHHH
Confidence            4444432 223222222 23667777888887 88888877644322     22 222332   1245666665532   


Q ss_pred             --CChhHHHHHHHHHHHhhcC
Q 043116          336 --AEFGTKKEAAWVISNATSG  354 (482)
Q Consensus       336 --~~~~~~~~a~~aL~~l~~~  354 (482)
                        =+..++..+..++.-+...
T Consensus       380 ~HWn~~V~~la~~vlk~l~e~  400 (449)
T 2npp_B          380 THWNKTIHGLIYNALKLFMEM  400 (449)
T ss_dssp             CCSSTTHHHHHHHHHHHHHTT
T ss_pred             HhcCHHHHHHHHHHHHHHHHH
Confidence              1567888888888766653

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=85.49  E-value=1.2  Score=35.52  Aligned_cols=74  Identities=12%  Similarity=0.075  Sum_probs=57.1

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..|.+.|++.++.++..|+..|-.+....+.....++....++..|+.++....++.|+..++..+...+.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            46788888889999999999999999888876444455566677888888888763448899888887776654

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=85.49  E-value=18  Score=34.00  Aligned_cols=239  Identities=15%  Similarity=0.116  Sum_probs=121.3

Q ss_pred             HHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhC
Q 043116           64 EKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAG  142 (482)
Q Consensus        64 ~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~  142 (482)
                      ...++..++..|+.++.++| +.-|...-.+|..+-..-...|..+.. .+-..+.+++.. ....-....+.+++.+..
T Consensus       156 k~~id~~Fi~~Ll~lfdSeD-pRERd~LktiLhrIY~Kf~~~R~~Irk-~i~nif~~fi~e~e~~nGIaeLLeilgSIin  233 (449)
T 2npp_B          156 KKYIDQKFVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIIN  233 (449)
T ss_dssp             GGTSCHHHHHHHHHTTTSST-HHHHHHHHHHHHHHHHSCTTTHHHHHH-HHHHHHHHHHHTCSCCSCHHHHHHHHHHHHS
T ss_pred             hhhCCHHHHHHHHHHcCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcccCCCCCHHHHHHHHHHHHh
Confidence            33445556778888888888 888888888887765433344433332 223445555432 111112245666766664


Q ss_pred             CC-----hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHH
Q 043116          143 DS-----SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDA  217 (482)
Q Consensus       143 ~~-----~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~  217 (482)
                      +-     ++.+..+     ...|+.+.....-.........|+..++..++    .....++..|+..=-..++.-...-
T Consensus       234 Gfa~PLKeehk~fl-----~~vLlPLhk~~~l~~y~~qL~ycv~qf~eKDp----~L~~~vi~~LLk~WP~tns~KevlF  304 (449)
T 2npp_B          234 GFALPLKEEHKIFL-----LKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDS----TLTEPVVMALLKYWPKTHSPKEVMF  304 (449)
T ss_dssp             SCCSSCCHHHHHHH-----HHTTGGGGGSSCGGGTHHHHHHHHHHHHHHCG----GGHHHHHHHHHHTCCSSCHHHHHHH
T ss_pred             ccCCCCcHHHHHHH-----HHHHHHHHccchhHHhHHHHHHHHHHHHhcCc----HhHHHHHHHHHHhCCCCCchHHHHH
Confidence            32     2222222     12222222111111222334455554444332    1122333333333223444444555


Q ss_pred             HHHHHHhccCCc-HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHhcC--
Q 043116          218 CRALAYLADGTN-DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLLIH--  292 (482)
Q Consensus       218 l~~L~~l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll~~--  292 (482)
                      +.-+..+...-+ ..... +...++..+..++++++-.|.+.|+....     ++.....+.+.  .++|.+...+..  
T Consensus       305 L~eleeile~~~~~ef~~-i~~~lF~~la~ci~S~hfqVAErAL~~w~-----N~~i~~li~~n~~~IlPii~p~L~~~s  378 (449)
T 2npp_B          305 LNELEEILDVIEPSEFVK-IMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNS  378 (449)
T ss_dssp             HHHHHHHHTTCCHHHHHH-HHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHhCCHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHC-----CHHHHHHHHhchhhhHHhhHHHHHHHH
Confidence            555555554332 22222 22346778888899999899988875443     23222222211  245666665522  


Q ss_pred             --CCchhHHHHHHHHHHHHhcCCHHHHHH
Q 043116          293 --NHNKSIKKEVCWIISNITAGNREQIQA  319 (482)
Q Consensus       293 --~~~~~v~~~a~~~L~nl~~~~~~~~~~  319 (482)
                        .=+..++..+..++..+..-++.....
T Consensus       379 ~~HWn~~V~~la~~vlk~l~e~d~~lf~~  407 (449)
T 2npp_B          379 KTHWNKTIHGLIYNALKLFMEMNQKLFDD  407 (449)
T ss_dssp             TCCSSTTHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHHHHHCHHHHHH
Confidence              115679999998888887766664443

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=85.40  E-value=1.6  Score=35.21  Aligned_cols=72  Identities=8%  Similarity=-0.018  Sum_probs=58.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHH
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILK  396 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~  396 (482)
                      ++..|.+-+.+.++.++..|+..|-.++.++...+...+.+..+++.|+.++..      .+..|+.+++..+.....
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            455666777889999999999999999998777777777777888888888752      356899999988887764

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=84.69  E-value=0.91  Score=35.20  Aligned_cols=73  Identities=15%  Similarity=0.136  Sum_probs=55.4

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..+.+.|++.++.++..|+..|-.+....+.....++.+..++..++.+++..+ +.++..++..+...+.
T Consensus        42 ~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~-~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           42 DCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGH-PKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCC-HHHHHHHHHHHHHHHH
Confidence            467888888899999999999999888887664433445556667777888887666 8899888887776653

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=84.58  E-value=25  Score=32.48  Aligned_cols=237  Identities=14%  Similarity=0.040  Sum_probs=121.4

Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      +...+..++...+..|+.++.++|+.-|...-.+|..+.+.-...|..+... +-..+.+.+.......-....+.++..
T Consensus       119 ~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~-innif~~fiye~e~~~GIaeLLeilgs  197 (403)
T 3fga_B          119 PNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-INNIFYRFIYETEHHNGIAELLEILGS  197 (403)
T ss_dssp             HHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHH-HHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             hhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH-HHHHHHHHhcCcccCCCHHHHHHHHHH
Confidence            3334455555678889999999999999999999998875554444444321 223344444222222233455566666


Q ss_pred             hhcCCC-CCChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHH
Q 043116          183 FCRGKP-QPPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAAL  260 (482)
Q Consensus       183 L~~~~~-~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~  260 (482)
                      +..+-. ........-....|+.+-.... .........|+......++.....+     +..+++.=-..++.-...-+
T Consensus       198 IinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~L~~~v-----i~~LLk~WP~tns~KevlFL  272 (403)
T 3fga_B          198 IINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV-----VMALLKYWPKTHSPKEVMFL  272 (403)
T ss_dssp             HHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGGGHHHH-----HHHHHHTCCSSCHHHHHHHH
T ss_pred             HHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHhCchhHHHH-----HHHHHHhCCCCCcHHHHHHH
Confidence            665432 1222233334455555555443 2233455556655555555443322     12222221112222222233


Q ss_pred             HHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH---cCChHHHHHHHh--
Q 043116          261 RTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID---AGLIGPIVNLLQ--  334 (482)
Q Consensus       261 ~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~L~~ll~--  334 (482)
                      .-+..+...- +.....+. ..+...+...+.++ +..|...|.....     + +.+..++.   ..++|.+...+.  
T Consensus       273 ~Ele~iLe~~~~~~f~~i~-~~lf~~la~ci~S~-hfqVAErAL~~wn-----N-e~i~~li~~n~~~IlPii~p~L~~~  344 (403)
T 3fga_B          273 NELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYWN-----N-EYIMSLISDNAAKILPIMFPSLYRN  344 (403)
T ss_dssp             HHHHHHHTTCCHHHHHHHH-HHHHHHHHHHHTCS-CHHHHHHHHGGGG-----C-HHHHHHHHTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCHHHHHHHH-HHHHHHHHHHHCCC-CHHHHHHHHHHhc-----c-HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3444444322 22222222 23666777888888 8888877664432     1 22222332   124555554443  


Q ss_pred             --c-CChhHHHHHHHHHHHhhc
Q 043116          335 --D-AEFGTKKEAAWVISNATS  353 (482)
Q Consensus       335 --~-~~~~~~~~a~~aL~~l~~  353 (482)
                        . =+..++..+..++..+..
T Consensus       345 ~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          345 SKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             TSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHccCHHHHHHHHHHHHHHHH
Confidence              2 267788888888877755

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=84.31  E-value=1.6  Score=34.16  Aligned_cols=75  Identities=11%  Similarity=-0.005  Sum_probs=59.2

Q ss_pred             hccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhC
Q 043116           26 FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-----EDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        26 ~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~  100 (482)
                      ..++..+.+.+++.++.++..|+..|-.+....+.....++.+..++..|+.++..     ...+.++..++..+...+.
T Consensus        37 k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34688888899999999999999999999887644455666678888999998874     1237899988888777654

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=84.05  E-value=18  Score=33.43  Aligned_cols=225  Identities=14%  Similarity=0.098  Sum_probs=103.9

Q ss_pred             CHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCC-HHHHHHHHHHHHHhhCCC-----
Q 043116           71 VVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS-DDVREQAVWALGNVAGDS-----  144 (482)
Q Consensus        71 ~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~a~~~L~~l~~~~-----  144 (482)
                      ++..|+.++.++| +.-|...-.+|.++-..-...|..+.. .+-..+..++.... -.-....+.+++.+..+-     
T Consensus       130 Fi~~Ll~lfdSeD-prER~~LktiLhrIY~kf~~~R~~Irk-~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLk  207 (403)
T 3fga_B          130 FVLQLLELFDSED-PRERDFLKTTLHRIYGKFLGLRAYIRK-QINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLK  207 (403)
T ss_dssp             HHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCC
T ss_pred             HHHHHHHHcCCCC-hHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCch
Confidence            4566777777777 777777777777765433333333322 22244444443211 111112444444444211     


Q ss_pred             hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116          145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYL  224 (482)
Q Consensus       145 ~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l  224 (482)
                      ++.+..+.     ..|+.+.....-.........|+......++.    ....++..++..=-..++.-...-+.-+..+
T Consensus       208 eehk~fl~-----~vLlPLHk~~~~~~y~~qL~ycv~qf~eKDp~----L~~~vi~~LLk~WP~tns~KevlFL~Ele~i  278 (403)
T 3fga_B          208 EEHKIFLL-----KVLLPLHKVKSLSVYHPQLAYCVVQFLEKDST----LTEPVVMALLKYWPKTHSPKEVMFLNELEEI  278 (403)
T ss_dssp             HHHHHHHH-----HTTTGGGGSTTGGGTHHHHHHHHHHHHHHCGG----GHHHHHHHHHHTCCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH-----HHHHHHHcCCcchhhHHHHHHHHHHHHHhCch----hHHHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence            11211111     12222221111112223344444444443321    1122333333222234444444555555555


Q ss_pred             ccCCc-HHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhc--CchHHHHHHh----cCCCchh
Q 043116          225 ADGTN-DKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINC--GALRYLLGLL----IHNHNKS  297 (482)
Q Consensus       225 ~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--~~i~~L~~ll----~~~~~~~  297 (482)
                      ...-+ .... -+...++..+..++.+++-.|.+.|+....     ++.....+.+.  .++|.+...+    +..=+..
T Consensus       279 Le~~~~~~f~-~i~~~lf~~la~ci~S~hfqVAErAL~~wn-----Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~  352 (403)
T 3fga_B          279 LDVIEPSEFV-KIMEPLFRQLAKCVSSPHFQVAERALYYWN-----NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKT  352 (403)
T ss_dssp             HTTCCHHHHH-HHHHHHHHHHHHHHTCSCHHHHHHHHGGGG-----CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHH
T ss_pred             HHhCCHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHhc-----cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHH
Confidence            54333 2222 222246777888888999888888876542     22222211111  2344444333    3322677


Q ss_pred             HHHHHHHHHHHHhcC
Q 043116          298 IKKEVCWIISNITAG  312 (482)
Q Consensus       298 v~~~a~~~L~nl~~~  312 (482)
                      ++..+..++..+..-
T Consensus       353 v~~l~~~vlk~l~e~  367 (403)
T 3fga_B          353 IHGLIYNALKLFMEM  367 (403)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHh
Confidence            888888888777653

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=83.30  E-value=1.9  Score=33.69  Aligned_cols=73  Identities=7%  Similarity=0.014  Sum_probs=58.6

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR------EDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..|.+.+++.++.++..|+..|-.+....+.....++....++..|++++..      .+ +.|+..++..+...+.
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~-~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCC-HHHHHHHHHHHHHHHH
Confidence            3688888999999999999999999999887644445666677788889999864      34 7899988888877764

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=83.02  E-value=33  Score=36.23  Aligned_cols=272  Identities=9%  Similarity=0.079  Sum_probs=143.2

Q ss_pred             HHHcchhhhhHHHHHHHHHHHhhcCCCCCChh----hhhhHHHHHHHHhc-cCChhHHHHHHHHHHHhccC-CcHHHHH-
Q 043116          162 AELNEHAKLSMLRTATWTLSNFCRGKPQPPFN----QIRPALRVLAQLIR-SNDEKVLTDACRALAYLADG-TNDKIQA-  234 (482)
Q Consensus       162 ~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~----~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~-~~~~~~~-  234 (482)
                      ..+..+.+..-++.++.+++-+..+...-...    ....+.|.|...+. .-.++....-..++..+..+ ++.+... 
T Consensus       514 e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~L  593 (997)
T 1vsy_5          514 ESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKTF  593 (997)
T ss_dssp             HHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHHH
Confidence            33334556777888999999999887433222    33577888888887 34444443333333222211 1111111 


Q ss_pred             -------------------------------HHHh-----CcHHHHHHh-hCCCChhhHHHHHHHHhHhhcCC--h--hh
Q 043116          235 -------------------------------VIEA-----GVCPRLVKL-LGHRSRLVLTAALRTIGNIVTGD--D--FQ  273 (482)
Q Consensus       235 -------------------------------~~~~-----~~l~~L~~l-l~~~~~~v~~~a~~~L~~l~~~~--~--~~  273 (482)
                                                     +.+.     ..-+.+..+ +.++...||+....+|..+....  +  ..
T Consensus       594 ~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~l~h~y~~VRe~Ig~~L~~i~~~~~~~~~~~  673 (997)
T 1vsy_5          594 FCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELVFDHPYDQVRQAVAKLLTTLVQNQSNPSISD  673 (997)
T ss_dssp             HHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCCSCCSCHHHHHHHHHHHHHHHHTSCCCCBSC
T ss_pred             HHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhhcccCCCC
Confidence                                           1111     111111111 46677889999998888877543  1  11


Q ss_pred             HHHHH----hc----C------------chHHHHHHhcC---------CC----ch--h-HHHHHHHHHHHHhcCCHHHH
Q 043116          274 TQCII----NC----G------------ALRYLLGLLIH---------NH----NK--S-IKKEVCWIISNITAGNREQI  317 (482)
Q Consensus       274 ~~~l~----~~----~------------~i~~L~~ll~~---------~~----~~--~-v~~~a~~~L~nl~~~~~~~~  317 (482)
                      ...++    +.    +            .+..+.+-+..         +.    +.  . .+.-..|....+..+.....
T Consensus       674 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~~~l  753 (997)
T 1vsy_5          674 PTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNKVLL  753 (997)
T ss_dssp             HHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGHHHH
T ss_pred             HHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCccch
Confidence            11122    11    0            02222222221         10    00  0 12223355555444333334


Q ss_pred             HHHHHcCChHHHHHHHhcCCh-hHHHH-HHHHHHHhhcCC-CHHHHHHHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHH
Q 043116          318 QAVIDAGLIGPIVNLLQDAEF-GTKKE-AAWVISNATSGG-THEQIKHLVREGCVKPLCDLLP-CPDPQIVTVCLIGLEN  393 (482)
Q Consensus       318 ~~l~~~~~i~~L~~ll~~~~~-~~~~~-a~~aL~~l~~~~-~~~~~~~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~  393 (482)
                      ..++..-++|.++.+....+. ++... +..++..++..- .++....     ++..+.+... +++. .+..++..+..
T Consensus       754 ~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~-----~l~~l~~~~~~s~sW-~R~~~L~~lq~  827 (997)
T 1vsy_5          754 VPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAA-----IVDYVCSSNVALSSN-QTKLQLAFIQH  827 (997)
T ss_dssp             HHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHH-----HHHHSSCTTTTSCSS-SHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHH-----HHHHHHHHHhcCCcH-HHHHHHHHHHH
Confidence            444443388888887765554 66666 666666665422 3333333     4566666665 5788 88888888776


Q ss_pred             HHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCC-HHHHHHHHHHHHHhcCC
Q 043116          394 ILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDN-NDIHEMSVKILETYWCG  451 (482)
Q Consensus       394 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~-~~v~~~a~~~l~~~~~~  451 (482)
                      ++-..-.. -     ..+      +.....+.+..++.++. .+|++.|...|..+...
T Consensus       828 ~~f~n~f~-l-----~~~------~~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c  874 (997)
T 1vsy_5          828 FLSAELLQ-L-----TEE------EKNKILEFVVSNLYNEQFVEVRVRAASILSDIVHN  874 (997)
T ss_dssp             HHHHHTTT-S-----CTT------HHHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHH-c-----CHH------HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHc
Confidence            65421110 0     000      11234677888889999 99999999999776444

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=80.65  E-value=4.6  Score=32.44  Aligned_cols=71  Identities=15%  Similarity=0.178  Sum_probs=53.6

Q ss_pred             ChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhc------CCCHHHHHHH
Q 043116          368 CVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS------HDNNDIHEMS  441 (482)
Q Consensus       368 ~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~------~~~~~v~~~a  441 (482)
                      ++..|..-+.++++.+...++..|..+++.+...           |...+....+++.|..+..      ..+..|++++
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~-----------Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~ki  119 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRR-----------FHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKV  119 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHH-----------HHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHH-----------HHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHH
Confidence            4566777778899999999999999999876552           5666666677777777764      2457888888


Q ss_pred             HHHHHHhc
Q 043116          442 VKILETYW  449 (482)
Q Consensus       442 ~~~l~~~~  449 (482)
                      ..+++...
T Consensus       120 l~li~~W~  127 (171)
T 1juq_A          120 IELLYSWT  127 (171)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	482
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	1e-103
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-86
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-36
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-09
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	6e-19
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	5e-09
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	2e-18
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	3e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	3e-11
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	6e-04
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	6e-11
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	6e-11
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-10
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-07
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	7e-08
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	6e-07
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-05
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	0.001
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	3e-05
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	5e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	6e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	6e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	8e-05
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.003

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  315 bits (806), Expect = e-103
 Identities = 235/446 (52%), Positives = 306/446 (68%), Gaps = 6/446 (1%)

Query: 7   QSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKV 66
             ++ + S  A         + LP M   + SDD + QL AT  FR++LS +   PI+ V
Sbjct: 56  SDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVV 115

Query: 67  IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPS 126
           IQ+GVVPR VEF+       LQ EAA ALTNIASGTS  TKV +D  AVP+F++LL + S
Sbjct: 116 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGS 175

Query: 127 DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG 186
            +V+EQA+WALGNVAGDS+  RD+VL   A+ P+L  L    K S++RTATWTLSN CRG
Sbjct: 176 VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPIL-GLFNSNKPSLIRTATWTLSNLCRG 234

Query: 187 K-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLV 245
           K PQP ++ +  AL  LA+LI S D + L DAC A++YL+DG  + IQAVI+  +  RLV
Sbjct: 235 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 294

Query: 246 KLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWI 305
           +LL H S LV T ALR +GNIVTG+D QTQ +IN G L  L  LL  +  ++IKKE CW 
Sbjct: 295 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL-SSPKENIKKEACWT 353

Query: 306 ISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTH--EQIKHL 363
           ISNITAGN EQIQAVIDA LI P+V LL+ AE+ TKKEA W ISNA+SGG    + I++L
Sbjct: 354 ISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYL 413

Query: 364 VREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGL 423
           V +GC+KPLCDLL   D +I+ V L  LENILK+GEA+K    + ++N+ A  +E+A G+
Sbjct: 414 VSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL-NINENADFIEKAGGM 472

Query: 424 EKIENLQSHDNNDIHEMSVKILETYW 449
           EKI N Q ++N+ I+E + KI+ETY+
Sbjct: 473 EKIFNCQQNENDKIYEKAYKIIETYF 498

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  269 bits (687), Expect = 4e-86
 Identities = 197/426 (46%), Positives = 278/426 (65%), Gaps = 12/426 (2%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           +  +V G+ S++ + QL+AT   RK+LS ++  PI+ +I++G++P+FV FL + D   +Q
Sbjct: 15  VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQ 74

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
           FE+A ALTNIASGTSE TK  +D GA+P F+ LLASP   + EQAVWALGN+AGD S  R
Sbjct: 75  FESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFR 134

Query: 149 DFVLSQGALIPLLAELN----EHAKLSMLRTATWTLSNFCRGKPQ-PPFNQIRPALRVLA 203
           D V+  GA+ PLLA L            LR  TWTLSN CR K   PP + +   L  L 
Sbjct: 135 DLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLV 194

Query: 204 QLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTI 263
           +L+  ND +VL D+C A++YL DG N++I+ V++ GV P+LVKLLG     ++T ALR I
Sbjct: 195 RLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI 254

Query: 264 GNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA 323
           GNIVTG D QTQ +I+ GAL     LL  N   +I+KE  W +SNITAG ++QIQ V++ 
Sbjct: 255 GNIVTGTDEQTQKVIDAGALAVFPSLL-TNPKTNIQKEATWTMSNITAGRQDQIQQVVNH 313

Query: 324 GLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQI 383
           GL+  +V +L  A+F T+KEAAW I+N TSGGT EQI +LV  G ++PL +LL   D +I
Sbjct: 314 GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKI 373

Query: 384 VTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVK 443
           + V L  + NI +  E       +G+  + + ++EE  GL+KIE LQ H+N  +++ S+ 
Sbjct: 374 IQVILDAISNIFQAAE------KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLN 427

Query: 444 ILETYW 449
           ++E Y+
Sbjct: 428 LIEKYF 433

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  137 bits (345), Expect = 3e-36
 Identities = 59/447 (13%), Positives = 122/447 (27%), Gaps = 71/447 (15%)

Query: 72  VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVRE 131
           +P+ V++L  +D  + Q   A  + +         +     G +   V LL SP+ +V++
Sbjct: 4   IPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 132 QAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPP 191
            A  AL N+   S+  +     Q  +   ++ L       + +  T  L N         
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 192 FNQIRPALRVLAQLIR---------------SNDEKVLTDACRALAYLADGTNDKIQAVI 236
                    +  ++I                  D +V  +A   L  L+     +     
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 237 EAGVCPRLVKLLGHRSRLVL--------------TAALRTIGNIVTGDDFQTQCIINCGA 282
            +G+   L+  + +                      + R    + T          N   
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT 242

Query: 283 LRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKK 342
            +   G   +  +K +              N +    +  +  I   +NL+  ++     
Sbjct: 243 EKSSTGCFSNKSDK-MMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301

Query: 343 EAAWVISNATSGGTHEQI-----KHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV 397
           EA        +               ++E  +  +  LL   +  +V      L N+ + 
Sbjct: 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361

Query: 398 GEAEKNTDNIG----------------------------------DVNQYAQLVEEAEGL 423
               +   N                                       Q A+    +  L
Sbjct: 362 PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSML 421

Query: 424 EKIENL-QSHDNNDIHEMSVKILETYW 449
             I NL +S  +    E +  +L   W
Sbjct: 422 NNIINLCRSSASPKAAEAARLLLSDMW 448

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.2 bits (162), Expect = 1e-12
 Identities = 30/304 (9%), Positives = 80/304 (26%), Gaps = 19/304 (6%)

Query: 155 GALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRP--ALRVLAQLIRSNDEK 212
           G  IP   +              + + + C         Q+     +  L  L+RS ++ 
Sbjct: 1   GLTIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAK-QQVYQLGGICKLVDLLRSPNQN 59

Query: 213 VLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDF 272
           V   A  AL  L   +                V LL       +   L  +   ++  D 
Sbjct: 60  VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE 119

Query: 273 QTQCIINCGALRYLLGLLI--------------HNHNKSIKKEVCWIISNITAGNREQIQ 318
             + +I          ++I                 +  +       + N+++ +  +  
Sbjct: 120 LKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQT 179

Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC 378
               +GLI  ++  +Q+    ++ +   V +                    + L      
Sbjct: 180 MRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN 239

Query: 379 PDPQIVTV-CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEK-IENLQSHDNND 436
              +  +  C     + +     +          + +  +  ++ +   +  +     + 
Sbjct: 240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDA 299

Query: 437 IHEM 440
             E 
Sbjct: 300 TLEA 303

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (157), Expect = 5e-12
 Identities = 33/310 (10%), Positives = 89/310 (28%), Gaps = 32/310 (10%)

Query: 69  SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
           SG              P++ F A   L N++S  +    +    G +   +  + +    
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA 200

Query: 129 VREQAVWALGNVAGDSSRCRDF-----------------VLSQGALIPLLAELNEHAKLS 171
            R         +    +                        ++ +     +  ++    +
Sbjct: 201 SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNN 260

Query: 172 MLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDK 231
                        +G      +        L  + +S  +  L     AL  L       
Sbjct: 261 NYDCPLPEEETNPKGSGWLYHSDAIRTY--LNLMGKSKKDATLEACAGALQNLTASKGLM 318

Query: 232 IQA-----VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYL 286
                    ++    P++ +LL   +  V+ +    + N+          ++       +
Sbjct: 319 SSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEV 376

Query: 287 LGLLIHN-----HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE-FGT 340
             LL  +     +++ I    C+ + N+ A   +  +    + ++  I+NL + +     
Sbjct: 377 TRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKA 436

Query: 341 KKEAAWVISN 350
            + A  ++S+
Sbjct: 437 AEAARLLLSD 446

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 2e-09
 Identities = 24/187 (12%), Positives = 54/187 (28%), Gaps = 14/187 (7%)

Query: 12  QISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIE-----KV 66
           +              + + T +  +        LEA     + L+  +            
Sbjct: 268 EEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIG 327

Query: 67  IQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL---- 122
           ++   +P+     ++     +    A  L+N++          + +   P   +LL    
Sbjct: 328 LKEKGLPQIARL-LQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHT 384

Query: 123 --ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTL 180
              S S+D+   A + + N+     +      S   L  ++      A       A   L
Sbjct: 385 GNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLL 444

Query: 181 SNFCRGK 187
           S+    K
Sbjct: 445 SDMWSSK 451

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.0 bits (216), Expect = 3e-19
 Identities = 63/472 (13%), Positives = 134/472 (28%), Gaps = 61/472 (12%)

Query: 29  LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQ 88
           +P +   +  +D  V  +A  +  ++   + +     +    +V   V  +   +  +  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRH-AIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 89  FEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR 148
              A  L N++    E        G +P  VK+L SP D V   A+  L N+       +
Sbjct: 78  RCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 149 DFVLSQGALIPLLAE------------------------------------------LNE 166
             V   G L  ++A                                           +  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 167 HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLAD 226
           +    +L T +  L          P       ++ L   +    ++++ +    L  L+D
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSD 256

Query: 227 GTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYL 286
               +       G+   LV+LLG     V+T A   + N+   +      +   G +  L
Sbjct: 257 AATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEAL 313

Query: 287 LGLLIHNHNKSIKKE----VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKK 342
           +  ++   ++    E        +++          AV     +  +V LL         
Sbjct: 314 VRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 373

Query: 343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLI---------GLEN 393
           +A   +    +         L  +G +  L  LL            +         G+  
Sbjct: 374 KATVGLIRNLALCPANH-APLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRM 432

Query: 394 ILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKIL 445
              V         +        ++     +     L      +I  ++  +L
Sbjct: 433 EEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVL 484

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.3 bits (214), Expect = 6e-19
 Identities = 49/283 (17%), Positives = 95/283 (33%), Gaps = 5/283 (1%)

Query: 113 GAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSM 172
            A+P   KLL      V  +A   +  ++   +     + S   +  ++  +     +  
Sbjct: 17  RAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVET 76

Query: 173 LRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKI 232
            R    TL N    +           +  L +++ S  + VL  A   L  L        
Sbjct: 77  ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 233 QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292
            AV  AG   ++V LL   +   L      +  +  G+      I+  G  + L+ ++  
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 293 NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNAT 352
              + +      ++  + +       A+++AG +  +   L D      +   W + N  
Sbjct: 197 YTYEKLLWTTSRVLKVL-SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNL- 254

Query: 353 SGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL 395
              +    K    EG +  L  LL   D  +VT     L N+ 
Sbjct: 255 ---SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLT 294

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 5e-14
 Identities = 64/363 (17%), Positives = 113/363 (31%), Gaps = 25/363 (6%)

Query: 54  MLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHG 113
           +L++        ++ SG     V  +    Y +L       +  + S  S N    ++ G
Sbjct: 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL-WTTSRVLKVLSVCSSNKPAIVEAG 227

Query: 114 AVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSML 173
            +      L  PS  + +  +W L N++  +++        G L+ LL   + +      
Sbjct: 228 GMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAA 287

Query: 174 RTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI--RSNDEKVLTDACRALAYLADGTNDK 231
              +    N  + K          AL         R +  +    A R L          
Sbjct: 288 GILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 347

Query: 232 IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI 291
             AV      P +VKLL   S   L  A   +   +         +   GA+  L+ LL+
Sbjct: 348 QNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLV 407

Query: 292 HNHNKSIKK--------------------EVCWIISNITAGNREQIQAVIDAGLIGPIVN 331
             H  + ++                    E C    +I A +      +     I   V 
Sbjct: 408 RAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQ 467

Query: 332 LLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL 391
           LL       ++ AA V+         E  + +  EG   PL +LL   +  + T     L
Sbjct: 468 LLYSPIENIQRVAAGVLCELAQ--DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVL 525

Query: 392 ENI 394
             +
Sbjct: 526 FRM 528

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.7 bits (171), Expect = 1e-13
 Identities = 27/228 (11%), Positives = 74/228 (32%), Gaps = 3/228 (1%)

Query: 224 LADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGAL 283
           + +  N +  A +     P L KLL    ++V+  A   +  +   +  +   + +   +
Sbjct: 2   VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61

Query: 284 RYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKE 343
             ++  + + ++    +     + N++  +RE + A+  +G I  +V +L          
Sbjct: 62  SAIVRTMQNTNDVETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFY 120

Query: 344 AAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI-LKVGEAEK 402
           A   + N            +   G ++ +  LL   + + + +    L+ +     E++ 
Sbjct: 121 AITTLHNLLL-HQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKL 179

Query: 403 NTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC 450
                G       ++      + +              S K       
Sbjct: 180 IILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAG 227

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.1 bits (133), Expect = 5e-09
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 2/76 (2%)

Query: 66  VIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASP 125
           +     +P FV+ L+      +Q  AA  L  +A    E  +     GA     +LL S 
Sbjct: 456 IRGLNTIPLFVQ-LLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSR 513

Query: 126 SDDVREQAVWALGNVA 141
           ++ V   A   L  ++
Sbjct: 514 NEGVATYAAAVLFRMS 529

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.2 bits (204), Expect = 2e-18
 Identities = 44/252 (17%), Positives = 89/252 (35%), Gaps = 9/252 (3%)

Query: 65  KVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFV-KLLA 123
           +V+   + P   E     D  Q +  A   L ++     +N         + + V + L 
Sbjct: 12  RVLSQPMPPTAGEAEQAAD-QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLE 69

Query: 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
           + +  +R +A   +G  + + +  ++ VL  GAL  LL  L+  A  ++   A + +S  
Sbjct: 70  AGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCL 129

Query: 184 CRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242
            R +              VL + ++   +K+   +   L  L  G  +    +   G+  
Sbjct: 130 VREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ 189

Query: 243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG-----ALRYLLGLLIHNHNKS 297
           +LV L+           L  + ++VT      +            LR+   LL  +    
Sbjct: 190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQ 249

Query: 298 IKKEVCWIISNI 309
            + E C  +   
Sbjct: 250 EELEFCEKLLQT 261

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 21/132 (15%), Positives = 45/132 (34%), Gaps = 3/132 (2%)

Query: 39  DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNI 98
             + V+++A      ++                    +   M++   +L+ ++A  L N+
Sbjct: 114 ACDTVRVKALFAISCLVRE--QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNL 171

Query: 99  ASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGAL 157
             G  E+       G V   V L+ +      E  + AL ++  D     R+    +  L
Sbjct: 172 LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 231

Query: 158 IPLLAELNEHAK 169
             LL    +  +
Sbjct: 232 EELLRHRCQLLQ 243

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (151), Expect = 3e-11
 Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 29/291 (9%)

Query: 27  EILPTMVAGVWSDD--NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDY 84
           EIL  ++ G+  ++  N V+L AT      L F + +  ++  +  ++    E     D 
Sbjct: 171 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPD- 229

Query: 85  PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 144
            +++  A + L  I S   +  +  +      I ++ + S  D+V  Q +    NV  + 
Sbjct: 230 TRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 289

Query: 145 SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQ---------- 194
                               ++      L+     L+     + +   +           
Sbjct: 290 MDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGV 349

Query: 195 -------------IRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVC 241
                        +   L  + + I++ D +    A  A   + +G        +     
Sbjct: 350 CLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAM 409

Query: 242 PRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH 292
           P L++L+   S +V   A  T+G I    +   +  IN   L  LL  LI 
Sbjct: 410 PTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 39/272 (14%), Positives = 76/272 (27%), Gaps = 23/272 (8%)

Query: 124 SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNF 183
            PS++V+  A  AL N    +    D    +  ++ ++ E  +     +   A   L   
Sbjct: 184 EPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 243

Query: 184 CRGKPQPPFNQIRPA-LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242
                Q     + PA   +  + ++S+ ++V        + + D   D      EA    
Sbjct: 244 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQG 303

Query: 243 RLVKLLGHRSRLVLTAAL-------RTIGNIVTGDDFQTQCIINCGALRYL--------- 286
           R  +             L        T  +    DD    C      L  L         
Sbjct: 304 RPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV 363

Query: 287 ------LGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGT 340
                 +   I N +   +         I  G        +    +  ++ L++D     
Sbjct: 364 PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVV 423

Query: 341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPL 372
           +  AAW +           I  +     ++ L
Sbjct: 424 RDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (148), Expect = 1e-10
 Identities = 52/375 (13%), Positives = 113/375 (30%), Gaps = 37/375 (9%)

Query: 85  PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS 144
              +F A   L       S       +   V + +KLL   + +V+  AV  LG +    
Sbjct: 17  KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--- 73

Query: 145 SRCRDFVLSQ--GALIPLLAELNE---HAKLSMLRTATWTLSNFCRGKPQPPFNQIRPAL 199
           S+ +++ +      L   +    E         L+T    L     G         +   
Sbjct: 74  SKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITG 133

Query: 200 RVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAA 259
           R+ + + +  D  V  +A   +A +       +     + +   L+  L      V    
Sbjct: 134 RLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRT 192

Query: 260 LRTIGNIVT--GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQI 317
           +  +G++V   G+            + +LL  L  N + S  +     I+ I+     +I
Sbjct: 193 IIALGHLVMSCGNIVFVD------LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRI 246

Query: 318 QAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLP 377
              ++  +I  +V      +   ++       +       E   H+              
Sbjct: 247 GEYLEK-IIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV-------------- 291

Query: 378 CPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDI 437
                I+ +CL  L         +   D   +        ++ +G +   +     +  +
Sbjct: 292 ---STIINICLKYLTYDPNYNYDD--EDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKV 346

Query: 438 HEMSVKILETYWCGR 452
              + K L+     R
Sbjct: 347 RRAAAKCLDAVVSTR 361

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 1e-07
 Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 44/291 (15%)

Query: 9    QQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQ 68
              F  +      N     ++L  +   V+S    +  + +                K   
Sbjct: 753  LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGP 812

Query: 69   SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDD 128
            + V     +         ++  A  +L  +      + ++ +      + ++  +SPS++
Sbjct: 813  AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLEL----KSVILEAFSSPSEE 868

Query: 129  VREQAVWALGNVA---------------GDSSRCRDFVLS-----------------QGA 156
            V+  A +ALG+++                   + +  +L                     
Sbjct: 869  VKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVEN 928

Query: 157  LIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTD 216
            +  LL +  E A+          L       P+         L  L   + S      + 
Sbjct: 929  IWALLLKHCECAEEGTRNVVAECLGKLTLIDPE-------TLLPRLKGYLISGSSYARSS 981

Query: 217  ACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIV 267
               A+ +        I  +++       +K L      V   AL T  +  
Sbjct: 982  VVTAVKFTISDHPQPIDPLLK-NCIGDFLKTLEDPDLNVRRVALVTFNSAA 1031

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 1e-05
 Identities = 18/148 (12%), Positives = 48/148 (32%), Gaps = 11/148 (7%)

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
            + +    ++  A   L  +     +    A     +P  + +   P+   R   ++ + 
Sbjct: 449 WLVDHVYAIREAATSNLKKLVEKFGKEWAHAT---IIPKVLAMSGDPNYLHRMTTLFCIN 505

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCR-GKPQPPFNQIRP 197
            ++    +  D       ++P +  +      ++      +L             ++++P
Sbjct: 506 VLSEVCGQ--DITTKH--MLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP 561

Query: 198 ALRVLAQLIRSNDEKVLTDACRALAYLA 225
            L    +L +  D  V   A  AL  L+
Sbjct: 562 ILE---KLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-05
 Identities = 38/323 (11%), Positives = 95/323 (29%), Gaps = 27/323 (8%)

Query: 80  MREDYPQLQFEAARALTNIASGT-SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
           +R +  QL+  + + L+ IA     E T+  +    +P     +    D+V       LG
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSEL----LPFLTDTIYD-EDEVLLALAEQLG 73

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPA 198
                     ++V     L+P L  L    +  +   A  +L                  
Sbjct: 74  TFTTLVG-GPEYVHC---LLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVP 129

Query: 199 LRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTA 258
           L  + +L   +     T AC   +      +  ++A +          L    + +V  A
Sbjct: 130 L--VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELR----QYFRNLCSDDTPMVRRA 183

Query: 259 ALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQ 318
           A   +G          + +        ++ +  +  +          +       +   Q
Sbjct: 184 AASKLGEFA-------KVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236

Query: 319 AVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC 378
             ++A ++  +    +D  +  +   A   +             + +   V    +L+  
Sbjct: 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTEL----QKAVGPEITKTDLVPAFQNLMKD 292

Query: 379 PDPQIVTVCLIGLENILKVGEAE 401
            + ++       ++   +   A+
Sbjct: 293 CEAEVRAAASHKVKEFCENLSAD 315

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 17/139 (12%), Positives = 46/139 (33%), Gaps = 12/139 (8%)

Query: 26  FEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYP 85
            ++    +A +      ++  AT+  +K++           I    +P+ +      +Y 
Sbjct: 440 EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATI----IPKVLAMSGDPNYL 495

Query: 86  QLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS 145
                    +  ++    ++         +P  +++   P  +VR     +L  +     
Sbjct: 496 HRM-TTLFCINVLSEVCGQDI---TTKHMLPTVLRMAGDPVANVRFNVAKSLQKI----G 547

Query: 146 RCRDFVLSQGALIPLLAEL 164
              D    Q  + P+L +L
Sbjct: 548 PILDNSTLQSEVKPILEKL 566

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 43.3 bits (100), Expect = 3e-05
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 17/110 (15%)

Query: 79  LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALG 138
           L+ +     +  +AR L                  AV + ++  +  +   R+   + LG
Sbjct: 27  LLDDHNSLKRISSARVLQLRG-----------GQDAVRLAIEFCSDKNYIRRDIGAFILG 75

Query: 139 NVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP 188
            +        +          L           +  TA  + +  C+  P
Sbjct: 76  QIKICKKCEDNV------FNILNNMALNDKSACVRATAIESTAQRCKKNP 119

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 42.9 bits (99), Expect = 5e-05
 Identities = 20/258 (7%), Positives = 49/258 (18%), Gaps = 33/258 (12%)

Query: 119 VKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATW 178
            +LL   +   R  +   L    G  +            + L  E              +
Sbjct: 25  FRLLDDHNSLKRISSARVLQLRGGQDA------------VRLAIEFCSDKNYIRRDIGAF 72

Query: 179 TLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEA 238
            L      K             +    +      V   A  + A            +   
Sbjct: 73  ILGQIKICKKCEDNV----FNILNNMALNDKSACVRATAIESTAQRCKK-----NPIYSP 123

Query: 239 GVCPRLVKLLGHRSRLVLTAALRTIG----------NIVTGDDFQTQCIINCGALRYLLG 288
            +  +       +S  V  A    I            I    D              +  
Sbjct: 124 KIVEQSQITAFDKSTNVRRATAFAISVINDKATIPLLINLLKDPNGDVRNWAAFAININK 183

Query: 289 LLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVI 348
               +      + +      +       +    D  ++  + + L+        +     
Sbjct: 184 YDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKDKRVLSVLCDELKKNT--VYDDIIEAA 241

Query: 349 SNATSGGTHEQIKHLVRE 366
                      +  ++ +
Sbjct: 242 GELGDKTLLPVLDTMLYK 259

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 42.0 bits (98), Expect = 6e-05
 Identities = 24/168 (14%), Positives = 45/168 (26%), Gaps = 28/168 (16%)

Query: 108 VAIDHGAVPIFVKLLASPSDDVREQAVWALG-----NVAGDSSRCRDFVLSQGALIPLLA 162
           +A+ +  V     L+    + VR    + L       +  D  R     ++    +  L 
Sbjct: 61  IAVRYSPVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLE 120

Query: 163 ELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACR--A 220
           ++       +                       R     L + +R  D +V     +   
Sbjct: 121 QMAADRDYLVRAYVVQ-----------------RIPPGRLFRFMRDEDRQVRKLVAKRLP 163

Query: 221 LAYLADGTNDKI----QAVIEAGVCPRLVKLLGHRSRLVLTAALRTIG 264
              L   T D      + V        L++LL      V  AA+    
Sbjct: 164 EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHAS 211

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 6e-05
 Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 23/240 (9%)

Query: 1   KLGEFLQSQQFQISAPALSLNLQSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRN 60
           KL +  Q   F      +   L+S              +D   +  +  + +  +     
Sbjct: 34  KLEQLNQYPDFNNYLIFVLTKLKS--------------EDEPTRSLSGLILKNNVK-AHF 78

Query: 61  SPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK 120
                 +   +    +  +     P ++      +T IAS              +P    
Sbjct: 79  QNFPNGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNW----PDLLPKLCS 133

Query: 121 LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQG---ALIPLLAELNEHAKLSMLRTAT 177
           LL S   +  E A  AL  +  DS+   D  +       +IP   +  +H+   +   A 
Sbjct: 134 LLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAV 193

Query: 178 WTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIE 237
             ++ F   + Q     I      L  L    + +V  + CRAL  L +   D++   + 
Sbjct: 194 ACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH 253

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 8e-05
 Identities = 41/354 (11%), Positives = 93/354 (26%), Gaps = 30/354 (8%)

Query: 65  KVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGA--VPIFVKLL 122
            V +  ++P  +  L    +          +  + +      +  I +    +P  ++ L
Sbjct: 386 NVYRDELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCL 445

Query: 123 ASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN 182
           +     VR    W L   A            +  +  LL  + +  K  +   A    + 
Sbjct: 446 SDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNK-RVQEAACSAFAT 504

Query: 183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP 242
                       +   L  L         K L     A+  LAD     +    +     
Sbjct: 505 LEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLN---KPEYIQ 561

Query: 243 RLVKLLGHRSRL------VLTAALRTIGNIVT--GDDFQT-------------QCIINCG 281
            L+  L  +  +       L   L  + ++ T     F               Q  +   
Sbjct: 562 MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQA 621

Query: 282 ALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDA-GLIGPIVNLLQDAEFGT 340
            L           +K        ++S +  G    I+ ++    ++  +   +QD     
Sbjct: 622 MLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEV 681

Query: 341 KKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI 394
           ++ +  ++ + T          +     +  L   L      +       +  I
Sbjct: 682 RQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEI 733

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 0.003
 Identities = 31/178 (17%), Positives = 62/178 (34%), Gaps = 9/178 (5%)

Query: 40  DNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIA 99
           D    + A  L   +      +  + V +S ++    +  M++  P+++  +   L ++ 
Sbjct: 635 DKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ-CMQDKMPEVRQSSFALLGDLT 693

Query: 100 SGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIP 159
               ++ K  I    +PI    L      V   A WA+G ++       +       ++ 
Sbjct: 694 KACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGEISIQMG--IEMQPYIPMVLH 750

Query: 160 LLAELNEHAKL--SMLRTATWTLSNFCRGKPQ---PPFNQIRPALRVLAQLIRSNDEK 212
            L E+        ++L     T+       PQ   P   Q         + IR N+EK
Sbjct: 751 QLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 808

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	482
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	100.0
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.77
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.73
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.67
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.58
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.49
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.45
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.41
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.32
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.3
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.25
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.22
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.19
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.14
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.12
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.11
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.05
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.82
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.81
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.73
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.45
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.3
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	97.55
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.31
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	96.41
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.32
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.2
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.5
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.88
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.81
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	93.14
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	91.31
d2jaka1	343	Serine/threonine-protein phosphatase 2A regulatory	89.41
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	88.76
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	85.99
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	85.28
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	81.65
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	81.44

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-45  Score=364.32  Aligned_cols=429  Identities=54%  Similarity=0.809  Sum_probs=388.3

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      ....+.++.+++.++++++..+..|+..++++++....+..+.+++.|++|.|+++++.+.+++++..|+++|++++.++
T Consensus        72 ~~~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~  151 (503)
T d1wa5b_          72 SQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT  151 (503)
T ss_dssp             ----CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC
Confidence            44556799999999999999999999999999987767778999999999999999987655889999999999999988


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      +.....+.+.|+++.++.++.+++.+++..|+|+|+|++.+.+..+..+.+.|+++.++.++ .+.+..++..++|++.+
T Consensus       152 ~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll-~~~~~~~~~~~~~~l~n  230 (503)
T d1wa5b_         152 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLF-NSNKPSLIRTATWTLSN  230 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGG-GSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhc-ccCCHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999999999999999999 66677899999999999


Q ss_pred             hhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 043116          183 FCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR  261 (482)
Q Consensus       183 L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  261 (482)
                      ++... +........+++|.+..++.+++++++..+++++.+++...++....+.+.|+++.++.++.++++.++..++.
T Consensus       231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~  310 (503)
T d1wa5b_         231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALR  310 (503)
T ss_dssp             HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHH
Confidence            99876 45556667899999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHH
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTK  341 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~  341 (482)
                      ++++++.+.+.....+.+.|+++.+..+++++ ++.+++.++|+++|++.+++.....+++.|+++.+++++.+++.+++
T Consensus       311 ~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~  389 (503)
T d1wa5b_         311 AVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTK  389 (503)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHH
Confidence            99999998888888899999999999999998 99999999999999999999989999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCC--CHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHH
Q 043116          342 KEAAWVISNATSGG--THEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEE  419 (482)
Q Consensus       342 ~~a~~aL~~l~~~~--~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~  419 (482)
                      ..|+|+|.|++..+  .++....+.+.|+++.|+++++..++++...++.+|.+++..++......+ ...+++...+.+
T Consensus       390 ~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~-~~~~~~~~~iee  468 (503)
T d1wa5b_         390 KEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARG-LNINENADFIEK  468 (503)
T ss_dssp             HHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHT-CSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhc-ccchHHHHHHHH
Confidence            99999999998754  356778889999999999999999999999999999999987665332111 234778999999


Q ss_pred             hchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCC
Q 043116          420 AEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       420 ~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~  454 (482)
                      .|+++.|+.|++++++++++.|.+++++||+++++
T Consensus       469 ~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~~~~  503 (503)
T d1wa5b_         469 AGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEED  503 (503)
T ss_dssp             TTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSSCC-
T ss_pred             CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCcCC
Confidence            99999999999999999999999999999988863

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-45  Score=354.21  Aligned_cols=421  Identities=47%  Similarity=0.768  Sum_probs=383.5

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      .....+|+.+++.+++++++.+..|+..++++++...++..+.+++.|++|.|+++|++.++++++..|+++|.+++.++
T Consensus         9 ~~~~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~   88 (434)
T d1q1sc_           9 GTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT   88 (434)
T ss_dssp             SSSSCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC
T ss_pred             chhhhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC
Confidence            34456799999999999999999999999999876656668889999999999999976654889999999999999988


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhh----hhHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAK----LSMLRTATW  178 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~----~~~~~~a~~  178 (482)
                      ++.+..+++.|+++.|+.++.++++++++.|+++|++++.+.+..+..+.+.|+++.++.++.....    ......++|
T Consensus        89 ~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~  168 (434)
T d1q1sc_          89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW  168 (434)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred             hhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence            8999999999999999999999999999999999999999989999999999999999999954332    345677899


Q ss_pred             HHHHhhcCC-CCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHH
Q 043116          179 TLSNFCRGK-PQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLT  257 (482)
Q Consensus       179 ~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~  257 (482)
                      ++.+++... +........++++.+..++.+++++++..+++++.+++..+++....+.+.|+++.++.++.++++.++.
T Consensus       169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~  248 (434)
T d1q1sc_         169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVT  248 (434)
T ss_dssp             HHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHH
T ss_pred             HHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhh
Confidence            999999876 3444456688999999999999999999999999999988887888888889999999999999999999


Q ss_pred             HHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCC
Q 043116          258 AALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAE  337 (482)
Q Consensus       258 ~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~  337 (482)
                      .++.+|.+++.+++.....+++.|+++.+..+++++ +++++..++|++++++...++....+.+.|+++.+++++.+++
T Consensus       249 ~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~  327 (434)
T d1q1sc_         249 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKAD  327 (434)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSC
T ss_pred             chhhhhhhHHhhhhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccC
Confidence            999999999998888888899999999999999998 9999999999999999988888888899999999999999999


Q ss_pred             hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHH
Q 043116          338 FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLV  417 (482)
Q Consensus       338 ~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l  417 (482)
                      ++++..|++++.+++..++.+....+.+.|+++.|++++++++++++..++++|.++++.++..      ...++++..+
T Consensus       328 ~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~------~~~~~~~~~~  401 (434)
T d1q1sc_         328 FKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL------GETEKLSIMI  401 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTT------TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhc------CCcHHHHHHH
Confidence            9999999999999998888888999999999999999999999999999999999999887654      2356789999


Q ss_pred             HHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          418 EEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       418 ~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      ++.|+++.|+.|++++|+++++.|.++|++||.
T Consensus       402 ~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~  434 (434)
T d1q1sc_         402 EECGGLDKIEALQRHENESVYKASLNLIEKYFS  434 (434)
T ss_dssp             HHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred             HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999995

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.2e-35  Score=288.06  Aligned_cols=370  Identities=23%  Similarity=0.308  Sum_probs=326.2

Q ss_pred             hhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           24 SKFEILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        24 ~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      ...|.+|.|++.+++ .++.++..|+++|.+++... ......+...|+++.++.++.+++ .+++..|+|+|+|++.++
T Consensus       116 i~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~-~~i~~~a~~~L~nia~~~  193 (503)
T d1wa5b_         116 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGS-VEVKEQAIWALGNVAGDS  193 (503)
T ss_dssp             HHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCC-HHHHHHHHHHHHHHHTTC
T ss_pred             HHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCC-hhHHHHHHHHHHHHhhhh
Confidence            456789999999984 56889999999999999875 556777889999999999999998 899999999999999989


Q ss_pred             hHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      ++.+..+.+.|+++.|+.++.+.++.++..++|+|.+++.............++++.++.++ .+.+.+++..++|++.+
T Consensus       194 ~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l-~~~d~~~~~~~~~~l~~  272 (503)
T d1wa5b_         194 TDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLI-YSMDTETLVDACWAISY  272 (503)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHT-TCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999976544444455667899999988 67788999999999999


Q ss_pred             hhcCCCCC-ChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHH
Q 043116          183 FCRGKPQP-PFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALR  261 (482)
Q Consensus       183 L~~~~~~~-~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~  261 (482)
                      ++...+.. ......++++.++.++.++++.++..++.++++++...+.....+.+.|+++.+..++.++++.++..+++
T Consensus       273 l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~  352 (503)
T d1wa5b_         273 LSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACW  352 (503)
T ss_dssp             HHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHH
Confidence            99865332 22334688999999999999999999999999999988888888999999999999999999999999999


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc---CCHHHHHHHHHcCChHHHHHHHhcCCh
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA---GNREQIQAVIDAGLIGPIVNLLQDAEF  338 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~L~~ll~~~~~  338 (482)
                      +|+|++.+++.....+++.|+++.++..+.++ +.+++.+|+|+|+|++.   ..++.+..+++.|+++.|+++++..++
T Consensus       353 ~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~  431 (503)
T d1wa5b_         353 TISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADN  431 (503)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCH
T ss_pred             HHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCH
Confidence            99999998888888899999999999999999 89999999999999996   245677888999999999999999999


Q ss_pred             hHHHHHHHHHHHhhcCCC----------HHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHh
Q 043116          339 GTKKEAAWVISNATSGGT----------HEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       339 ~~~~~a~~aL~~l~~~~~----------~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~  397 (482)
                      ++...++.+|.++...+.          ......+.+.|+++.|..+..+++.+++..|..+|.++|..
T Consensus       432 ~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~~i~~~A~~il~~~f~~  500 (503)
T d1wa5b_         432 RIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE  500 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC
Confidence            999999999999874321          23345667889999999999999999999999999988853

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.7e-34  Score=276.28  Aligned_cols=369  Identities=24%  Similarity=0.351  Sum_probs=321.2

Q ss_pred             hhhhccHHHHHHHhcC-CCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCC
Q 043116           23 QSKFEILPTMVAGVWS-DDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASG  101 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~  101 (482)
                      ....|.+|.|++++++ +++.+|..|+++|.++++.. .+....+++.|+++.++.++.+++ +++++.|+++|++++.+
T Consensus        52 i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~-~~~~~~a~~~L~nl~~~  129 (434)
T d1q1sc_          52 IIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPH-AHISEQAVWALGNIAGD  129 (434)
T ss_dssp             HHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCC-HHHHHHHHHHHHHHhcc
Confidence            3466899999999974 56889999999999999875 556788889999999999999998 99999999999999998


Q ss_pred             ChHhHHHHHhCCChHHHHHhhCCCC-----HHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116          102 TSENTKVAIDHGAVPIFVKLLASPS-----DDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA  176 (482)
Q Consensus       102 ~~~~~~~~~~~g~i~~L~~ll~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  176 (482)
                      +++.+..+.+.|+++.++.++...+     ......+.+++.+++.............++++.+..++ .+.+++++..+
T Consensus       130 ~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll-~~~~~~~~~~a  208 (434)
T d1q1sc_         130 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL-HHNDPEVLADS  208 (434)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHT-TCSCHHHHHHH
T ss_pred             chHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHH-hccccchhhhH
Confidence            8999999999999999999997643     34566788999999976654444445556788888888 67788999999


Q ss_pred             HHHHHHhhcCCCCCCh-hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhh
Q 043116          177 TWTLSNFCRGKPQPPF-NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLV  255 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~~-~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v  255 (482)
                      +|++.+++...+.... ....++++.+++++.+++++++..++.++.+++..++.....+.+.|+++.+..++.++++++
T Consensus       209 ~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v  288 (434)
T d1q1sc_         209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNI  288 (434)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHH
T ss_pred             HhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhh
Confidence            9999999987532222 234689999999999999999999999999999888888888999999999999999999999


Q ss_pred             HHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc-CCHHHHHHHHHcCChHHHHHHHh
Q 043116          256 LTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITA-GNREQIQAVIDAGLIGPIVNLLQ  334 (482)
Q Consensus       256 ~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~L~~ll~  334 (482)
                      +..++++|++++...+.....+.+.|+++.++.++.++ ++.++..|+|+++|++. ++++....+.+.|+++.|+++++
T Consensus       289 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~  367 (434)
T d1q1sc_         289 QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLS  367 (434)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTT
T ss_pred             hHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhc
Confidence            99999999999998888888899999999999999999 89999999999999997 56777888999999999999999


Q ss_pred             cCChhHHHHHHHHHHHhhcC-----CCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHH
Q 043116          335 DAEFGTKKEAAWVISNATSG-----GTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENIL  395 (482)
Q Consensus       335 ~~~~~~~~~a~~aL~~l~~~-----~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~  395 (482)
                      +.+++++..++++|.++...     .++.....+.+.|+++.|..+.++++++++..+.++|.++|
T Consensus       368 ~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f  433 (434)
T d1q1sc_         368 AKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYF  433 (434)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            99999999999999998642     23334566778899999999999999999999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.8e-32  Score=267.05  Aligned_cols=404  Identities=17%  Similarity=0.167  Sum_probs=347.0

Q ss_pred             hhhhccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCC
Q 043116           23 QSKFEILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGT  102 (482)
Q Consensus        23 ~~~~~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~  102 (482)
                      ....|++|.|+++|+++++.++..|+++|.+++... ......+.+.|+++.|+.++++++ ++++..++++|.+++..+
T Consensus        97 i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~  174 (529)
T d1jdha_          97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTN-VKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCC-HHHHHHHHHHHHHHHTTC
T ss_pred             HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhccc-chhhhHHHhcCCchHHHHHHHccC-hHHHHHHHHHHHHHhhhh
Confidence            345689999999999999999999999999999875 455667779999999999999999 999999999999999988


Q ss_pred             hHhHHHHHhCCChHHHHHhhCC-CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHH
Q 043116          103 SENTKVAIDHGAVPIFVKLLAS-PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLS  181 (482)
Q Consensus       103 ~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~  181 (482)
                      ++.+..+.+.|+++.|+.++.. ....++..+.+++.+++.. +..+..+.+.|+++.++.++ .+.+..+...+++++.
T Consensus       175 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~~~~~g~~~~L~~ll-~~~~~~~~~~a~~~l~  252 (529)
T d1jdha_         175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHL-TDPSQRLVQNCLWTLR  252 (529)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHHHHHTTHHHHHHTTT-TSSCHHHHHHHHHHHH
T ss_pred             hHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccchhhhhhhhhhHHHHh-cccchhhhhhhhhHHH
Confidence            9999999999999999999964 5578999999999999854 56778889999999999999 6777889999999999


Q ss_pred             HhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhC--CCChhhHHHH
Q 043116          182 NFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLG--HRSRLVLTAA  259 (482)
Q Consensus       182 ~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~--~~~~~v~~~a  259 (482)
                      +++....  ......++++.+++++.+++++++..++++|++++..++.....+.+.++++.++..+.  ++.+.++..+
T Consensus       253 ~ls~~~~--~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a  330 (529)
T d1jdha_         253 NLSDAAT--KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA  330 (529)
T ss_dssp             HHHTTCT--TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcccccc--chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHH
Confidence            9986542  23334789999999999999999999999999999888888888889999999998884  4567899999


Q ss_pred             HHHHhHhhcCCh---hhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC
Q 043116          260 LRTIGNIVTGDD---FQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA  336 (482)
Q Consensus       260 ~~~L~~l~~~~~---~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~  336 (482)
                      +++|.+++....   .....+...++++.++.++.++.+..++..+++++.|++.. ++....+.+.|+++.+++++.+.
T Consensus       331 ~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~-~~~~~~l~~~g~i~~L~~lL~~~  409 (529)
T d1jdha_         331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRA  409 (529)
T ss_dssp             HHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS-GGGHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchh-hhhhhhhhhcccHHHHHHHHhcC
Confidence            999999997543   23445667899999999999875677889999999999875 45567788999999999999743


Q ss_pred             C----------------------hhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHH
Q 043116          337 E----------------------FGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENI  394 (482)
Q Consensus       337 ~----------------------~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l  394 (482)
                      +                      .++...++.++..++.  .+.....+.+.|+++.|++++.++++.++..+..+|.++
T Consensus       410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~--~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L  487 (529)
T d1jdha_         410 HQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR--DVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL  487 (529)
T ss_dssp             HHHHC-----------CBTTBCHHHHHHHHHHHHHHHTT--SHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHcc--CHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            3                      3566777888888876  667777888899999999999999999999999999998


Q ss_pred             HHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHh
Q 043116          395 LKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~  448 (482)
                      ....+             .++.+.+.|+++.|.+++.++|+.+++.|..+|.++
T Consensus       488 ~~~~~-------------~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         488 AQDKE-------------AAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             TTSHH-------------HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hcChh-------------hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            64322             267888999999999999999999999999998764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-34  Score=281.79  Aligned_cols=439  Identities=16%  Similarity=0.177  Sum_probs=363.2

Q ss_pred             hchhhhhhhccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHH
Q 043116           18 LSLNLQSKFEILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALT   96 (482)
Q Consensus        18 ~~~~~~~~~~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~   96 (482)
                      .+..+....+.++.+++.|+ ++++..+..|+.+|.+++.+  .+....+++.|++|.|+.+|++++ ++++..|+++|+
T Consensus        50 ~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~--~~~~~~i~~~g~i~~Li~lL~~~~-~~v~~~a~~aL~  126 (529)
T d1jdha_          50 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH--REGLLAIFKSGGIPALVKMLGSPV-DSVLFYAITTLH  126 (529)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHHTTCSC-HHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC--chhHHHHHHCCCHHHHHHHhCCCC-HHHHHHHHHHHH
Confidence            34445556678999999997 56789999999999999865  566888999999999999999999 999999999999


Q ss_pred             HHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHH
Q 043116           97 NIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTA  176 (482)
Q Consensus        97 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a  176 (482)
                      +++.+++..+..+.+.|+++.|+.++++++++++..+++++.+++..++..+..+...|+++.++.++..+....++..+
T Consensus       127 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~  206 (529)
T d1jdha_         127 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTT  206 (529)
T ss_dssp             HHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHH
T ss_pred             HhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHH
Confidence            99998888899999999999999999999999999999999999988888888999999999999999766777889999


Q ss_pred             HHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhH
Q 043116          177 TWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVL  256 (482)
Q Consensus       177 ~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~  256 (482)
                      ++++.+++............++++.+..++.+++++++..+++++.+++......   ....|+++.++.++.++++.++
T Consensus       207 ~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~~~~~~~  283 (529)
T d1jdha_         207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVV  283 (529)
T ss_dssp             HHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhcccccHHHH
Confidence            9999999976544444455789999999999999999999999999998554321   2224678999999999999999


Q ss_pred             HHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcC-CCchhHHHHHHHHHHHHhcCC--HH-HHHHHHHcCChHHHHHH
Q 043116          257 TAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIH-NHNKSIKKEVCWIISNITAGN--RE-QIQAVIDAGLIGPIVNL  332 (482)
Q Consensus       257 ~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~v~~~a~~~L~nl~~~~--~~-~~~~l~~~~~i~~L~~l  332 (482)
                      ..++++|++++..++.....+.+.++++.++..+.. ...+.++..++++|.+++...  .+ ....+...+.++.++.+
T Consensus       284 ~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~l  363 (529)
T d1jdha_         284 TCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL  363 (529)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHT
T ss_pred             HHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHH
Confidence            999999999999888888888899999999988853 326789999999999998742  22 23445578999999999


Q ss_pred             HhcC-ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH----------------------HHHHHHHH
Q 043116          333 LQDA-EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP----------------------QIVTVCLI  389 (482)
Q Consensus       333 l~~~-~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~----------------------~v~~~~l~  389 (482)
                      +..+ +..++..+++++.+++.  +++....+.+.|+++.|++++.+.+.                      +++..+..
T Consensus       364 l~~~~~~~~~~~~~~~l~~l~~--~~~~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  441 (529)
T d1jdha_         364 LHPPSHWPLIKATVGLIRNLAL--CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTG  441 (529)
T ss_dssp             TSTTCCHHHHHHHHHHHHHHTT--SGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHH
T ss_pred             HhccchHHHHHHHHHHHhhcch--hhhhhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHH
Confidence            9864 45688899999999987  44566788899999999999865433                      45555666


Q ss_pred             HHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCC----------CCCCCCC
Q 043116          390 GLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGR----------VVGPQPG  459 (482)
Q Consensus       390 ~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~----------~~~~~~~  459 (482)
                      ++..+.....             -+..+.+.|+++.|.+++.++++.++..|..++..+..++          ..+++.+
T Consensus       442 al~~la~~~~-------------~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~  508 (529)
T d1jdha_         442 ALHILARDVH-------------NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTE  508 (529)
T ss_dssp             HHHHHTTSHH-------------HHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHccCHH-------------HHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHH
Confidence            6665543221             2566788999999999999999999999999998876544          2235677


Q ss_pred             CccCCCCCCcccCCcccc
Q 043116          460 LTYAGNEGEDALGSNVIA  477 (482)
Q Consensus       460 ~~~~~~~~~~~~~~~~~~  477 (482)
                      +.+.+|+.++..|+.+|.
T Consensus       509 Ll~s~n~~v~~~a~~aL~  526 (529)
T d1jdha_         509 LLHSRNEGVATYAAAVLF  526 (529)
T ss_dssp             GGGCSSHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHH
Confidence            888888888877776653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.3e-26  Score=221.04  Aligned_cols=368  Identities=17%  Similarity=0.184  Sum_probs=280.7

Q ss_pred             CCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHH
Q 043116           70 GVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRD  149 (482)
Q Consensus        70 g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~  149 (482)
                      +.+|.|+++|++++ ++++..|+++|+++|.++++.+..+.+.|+++.|++++++++++++..|+++|.+++.+++..+.
T Consensus         2 ~~ip~lv~~L~~~~-~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           2 LTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CCHHHHHHHHHSSC-THHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CCHHHHHHHhCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            46899999999999 99999999999999998999999999999999999999999999999999999999988888999


Q ss_pred             HHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHh----------------ccCChhH
Q 043116          150 FVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLI----------------RSNDEKV  213 (482)
Q Consensus       150 ~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll----------------~~~~~~~  213 (482)
                      .+.+.|+++.++.++....+..++..+++++.+++....... ......++.+...+                ...++.+
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v  159 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE-ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEV  159 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHH-HHHHHHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHH-HHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHH
Confidence            999999999999999777888899999999999998753332 23334444443332                2456889


Q ss_pred             HHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCC------ChhhHHHHHHHHhHhh--------------------
Q 043116          214 LTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHR------SRLVLTAALRTIGNIV--------------------  267 (482)
Q Consensus       214 ~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~------~~~v~~~a~~~L~~l~--------------------  267 (482)
                      +..+++++.+++...+.........|+++.++.++.+.      .......+...+.+..                    
T Consensus       160 ~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  239 (457)
T d1xm9a1         160 FFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARN  239 (457)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC--
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhh
Confidence            99999999999977665555455567888888877431      1111111111111100                    


Q ss_pred             ------------------------------cCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHH--
Q 043116          268 ------------------------------TGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNRE--  315 (482)
Q Consensus       268 ------------------------------~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~--  315 (482)
                                                    .........+...++++.++.++....++.++..+.+++.+++.....  
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  319 (457)
T d1xm9a1         240 AYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             --------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             hhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccch
Confidence                                          001111122233456788888887776888999999999999863221  


Q ss_pred             ---HHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHH
Q 043116          316 ---QIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTV  386 (482)
Q Consensus       316 ---~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~  386 (482)
                         ....+.+.|+++.|++++.+++++++..+++++.+++..  ++....+ ..++++.++.++..      .+++++..
T Consensus       320 ~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~--~~~~~~i-~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH--PLLHRVM-GNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS--GGGHHHH-HHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             HHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhC--hhHHHHH-HHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence               122344689999999999999999999999999999974  3444443 45678999988853      23478999


Q ss_pred             HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcC-CCHHHHHHHHHHHHHhcCCCCC
Q 043116          387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSH-DNNDIHEMSVKILETYWCGRVV  454 (482)
Q Consensus       387 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~~~~  454 (482)
                      ++.+|.++....+.            .++.+.+.|+++.|.++..+ +++.+++.|..+|.++|..++.
T Consensus       397 a~~~L~~l~~~~~~------------~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         397 ACYTVRNLMASQPQ------------LAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHTTCTH------------HHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHhcCCHH------------HHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            99999999854332            36778899999999999765 5789999999999999987654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=209.25  Aligned_cols=362  Identities=16%  Similarity=0.188  Sum_probs=270.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .||.|+++|+++++.++..|+++|.+++..+ .+....+.+.|++|.|+++|++++ ++++..|+++|.+++.++++++.
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPN-QNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSC-HHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCC-HHHHHHHHHHHHHHHcCCHHHHH
Confidence            6899999999999999999999999999765 677899999999999999999999 99999999999999988999999


Q ss_pred             HHHhCCChHHHHHhhC-CCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHc---------------chhhhh
Q 043116          108 VAIDHGAVPIFVKLLA-SPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELN---------------EHAKLS  171 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~---------------~~~~~~  171 (482)
                      .+.+.|+++.++.++. ..++.++..|+++|.+++..... +...... +++.++..+.               ...+..
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL-KEELIAD-ALPVLADRVIIPFSGWCDGNSNMSREVVDPE  158 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST-HHHHHHH-HHHHHHHHTTHHHHTCC---------CCCHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh-HHHHHhc-ccHHHHHHHHhhhhhhhcchhhhhcccccHH
Confidence            9999999999999886 56789999999999999976543 3333333 3444444331               234567


Q ss_pred             HHHHHHHHHHHhhcCCCCCChhh-hhhHHHHHHHHhccC------ChhHHHHHHHHHHHhcc------------------
Q 043116          172 MLRTATWTLSNFCRGKPQPPFNQ-IRPALRVLAQLIRSN------DEKVLTDACRALAYLAD------------------  226 (482)
Q Consensus       172 ~~~~a~~~L~~L~~~~~~~~~~~-~~~~~~~L~~ll~~~------~~~~~~~~l~~L~~l~~------------------  226 (482)
                      ++..+++++.+++.......... ..++++.++.++++.      .......+...+.....                  
T Consensus       159 v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~  238 (457)
T d1xm9a1         159 VFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhh
Confidence            88899999999987753322222 257788888777532      11111222222211110                  


Q ss_pred             --------------------------------CCcHHHHHHHHhCcHHHHHHhhCC-CChhhHHHHHHHHhHhhcCChh-
Q 043116          227 --------------------------------GTNDKIQAVIEAGVCPRLVKLLGH-RSRLVLTAALRTIGNIVTGDDF-  272 (482)
Q Consensus       227 --------------------------------~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~l~~~~~~-  272 (482)
                                                      ........+...++++.++.++.. .++.++..+.+++.+++..... 
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~  318 (457)
T d1xm9a1         239 NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLM  318 (457)
T ss_dssp             ---------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSH
T ss_pred             hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccc
Confidence                                            000011112223456667676643 5677888899999999865432 


Q ss_pred             ----hHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc------CChhHHH
Q 043116          273 ----QTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD------AEFGTKK  342 (482)
Q Consensus       273 ----~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~------~~~~~~~  342 (482)
                          ....+.+.++++.++.++.++ ++.++..+++++++++.. ++.... +..++++.++.++..      .+.+++.
T Consensus       319 ~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~-~~~~~~-i~~~~i~~li~~L~~~~~~~~~~~~v~~  395 (457)
T d1xm9a1         319 SSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRH-PLLHRV-MGNQVFPEVTRLLTSHTGNTSNSEDILS  395 (457)
T ss_dssp             HHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTS-GGGHHH-HHHHTHHHHHHTTTSCCSCSTTHHHHHH
T ss_pred             hHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhC-hhHHHH-HHHhhHHHHHHHHhccccCcCCcHHHHH
Confidence                234455779999999999998 999999999999999874 343434 445789999999863      2457899


Q ss_pred             HHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHh
Q 043116          343 EAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       343 ~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~  397 (482)
                      .++.+|.+++.. +++..+.+.+.|+++.|++++.+ +++.+++.|..+|.+++..
T Consensus       396 ~a~~~L~~l~~~-~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         396 SACYTVRNLMAS-QPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHHHHHHHHTT-CTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            999999999975 66778888899999999999865 5678999999999999754

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=9.4e-20  Score=162.31  Aligned_cols=223  Identities=18%  Similarity=0.159  Sum_probs=185.1

Q ss_pred             hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHH
Q 043116           85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAE  163 (482)
Q Consensus        85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~  163 (482)
                      .+.+..|+.+|.+++. +.+++..+...|+++.++. ++.+++++++..|+++|++++.+++..+..+.+.|+++.++.+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~l  109 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL  109 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHH
Confidence            6789999999999996 7888889999999999886 7889999999999999999999999999999999999999999


Q ss_pred             HcchhhhhHHHHHHHHHHHhhcCCCCCC-hhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHH
Q 043116          164 LNEHAKLSMLRTATWTLSNFCRGKPQPP-FNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCP  242 (482)
Q Consensus       164 l~~~~~~~~~~~a~~~L~~L~~~~~~~~-~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~  242 (482)
                      +.+..++.++..++++|++++...+... .....++++.+++++.++++.++..++++|.+++..++.....+.+.|+++
T Consensus       110 L~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~  189 (264)
T d1xqra1         110 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQ  189 (264)
T ss_dssp             HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHH
T ss_pred             hhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHH
Confidence            9666778899999999999998874333 334578999999999999999999999999999988888888899999999


Q ss_pred             HHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC-----chHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          243 RLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG-----ALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       243 ~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~-----~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      .++.++.++++.++..++++|++++..++.........+     .+..+.+.+...++.......+.-|.+
T Consensus       190 ~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~~~~~ll~  260 (264)
T d1xqra1         190 QLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  260 (264)
T ss_dssp             HHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhhhhHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999998877666555432     233344444444233333334443433

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=6.9e-19  Score=156.60  Aligned_cols=229  Identities=18%  Similarity=0.170  Sum_probs=187.7

Q ss_pred             cCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH-hhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHH
Q 043116          208 SNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK-LLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYL  286 (482)
Q Consensus       208 ~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L  286 (482)
                      ..+.+.+..++.+|.+++.. .+....+...|+++.++. +++++++.++..|+++|++++.+++.....+.+.|+++.|
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~L  106 (264)
T d1xqra1          28 AADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKL  106 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHH
Confidence            44677889999999999954 445667888899998875 7788999999999999999999888888889999999999


Q ss_pred             HHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc
Q 043116          287 LGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE  366 (482)
Q Consensus       287 ~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~  366 (482)
                      +.++.+..++.++..+++++++++.+++.....+...|+++.|++++.++++.++..++++|.+++.. +++....+.+.
T Consensus       107 v~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  185 (264)
T d1xqra1         107 LRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHT
T ss_pred             HHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhc-cHHHHHHHHHh
Confidence            99998665889999999999999998888888889999999999999999999999999999999875 56777888999


Q ss_pred             CChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHH--hch---HHHHHHhhc--CCCHHHHH
Q 043116          367 GCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEE--AEG---LEKIENLQS--HDNNDIHE  439 (482)
Q Consensus       367 ~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~---~~~l~~l~~--~~~~~v~~  439 (482)
                      |+++.|+.++++++++++..++++|.++....+..            ...+..  .+.   +..+.+...  ....+..+
T Consensus       186 ~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~------------~~~~~~~~l~~~~~L~~~~~~~~~~~~~~e~~~  253 (264)
T d1xqra1         186 GMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG------------VRECREPELGLEELLRHRCQLLQQHEEYQEELE  253 (264)
T ss_dssp             THHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH------------HHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHH------------HHHHHHhhhhHHHHHHHHHHhccchHHHHHHHH
Confidence            99999999999999999999999999998654442            111211  121   222222222  22345568


Q ss_pred             HHHHHHHHhcC
Q 043116          440 MSVKILETYWC  450 (482)
Q Consensus       440 ~a~~~l~~~~~  450 (482)
                      .+..+++.+|.
T Consensus       254 ~~~~ll~~~~~  264 (264)
T d1xqra1         254 FCEKLLQTCFS  264 (264)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHhcC
Confidence            88888888874

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=6.8e-17  Score=161.14  Aligned_cols=378  Identities=12%  Similarity=0.139  Sum_probs=248.8

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHH
Q 043116           30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVA  109 (482)
Q Consensus        30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~  109 (482)
                      |.+.++++.+++.++..|+.++..++.....    ......++|.+..++++++ ..+|..++.+|++++..   .....
T Consensus       206 ~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~----~~~~~~i~~~l~~~~~D~~-~~Vr~~~~~~l~~l~~~---~~~~~  277 (588)
T d1b3ua_         206 PMFSNLASDEQDSVRLLAVEACVNIAQLLPQ----EDLEALVMPTLRQAAEDKS-WRVRYMVADKFTELQKA---VGPEI  277 (588)
T ss_dssp             HHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH----HHHHHHTHHHHHHHHTCSS-HHHHHHHHHTHHHHHHH---HCHHH
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHhhccCCH----HHHHHHHHHHHHHhccccc-HHHHHHHHHhHHHHHHH---hhhhh
Confidence            3334444444445554455555444433210    1112234555555555555 56666666666665531   11112


Q ss_pred             HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCC
Q 043116          110 IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       110 ~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~  188 (482)
                      ....+++.+..++.+.++++|..++.++..++..- ........-..+++.+...+ .+.+..++..++.++..++..- 
T Consensus       278 ~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~-~d~~~~vr~~~~~~l~~~~~~~-  355 (588)
T d1b3ua_         278 TKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELV-SDANQHVKSALASVIMGLSPIL-  355 (588)
T ss_dssp             HHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHH-TCSCHHHHHHHHTTGGGGHHHH-
T ss_pred             hhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhh-cCCChHHHHHHHHHHhhhhhcc-
Confidence            22345677777778888888888888887776322 12222222234566666666 5666777777777766665321 


Q ss_pred             CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhc
Q 043116          189 QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVT  268 (482)
Q Consensus       189 ~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~  268 (482)
                       ........++|.+..++.+++++++..++.++..+...-..  . .....+++.+...+.+.++.+|..++.+++.++.
T Consensus       356 -~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~--~-~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~  431 (588)
T d1b3ua_         356 -GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGI--R-QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAG  431 (588)
T ss_dssp             -CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCH--H-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             -chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcch--h-hhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence             11223456788889999999999999999988877643221  1 1123567888889999999999999999998875


Q ss_pred             CChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116          269 GDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV  347 (482)
Q Consensus       269 ~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a  347 (482)
                      .....   .....+.+.+..++.++ ...+|..|+++++.++.. .++    .....+++.+.+++.+++...|..++.+
T Consensus       432 ~~~~~---~~~~~l~~~l~~~l~D~-~~~VR~~A~~~L~~l~~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~  503 (588)
T d1b3ua_         432 QLGVE---FFDEKLNSLCMAWLVDH-VYAIREAATSNLKKLVEKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFC  503 (588)
T ss_dssp             HHCGG---GCCHHHHHHHHHGGGCS-SHHHHHHHHHHHHHHHHHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             HcChH---hHHHHHHHHHHhhccCC-chhHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            21111   12224567788888888 889999999999999862 222    1233588899999999999999999999


Q ss_pred             HHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHH
Q 043116          348 ISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIE  427 (482)
Q Consensus       348 L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  427 (482)
                      +..+....+.+    ......++.+.++++++.+.||..+.++|..+....+..          .+     .....+.+.
T Consensus       504 l~~l~~~~~~~----~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~----------~~-----~~~i~~~l~  564 (588)
T d1b3ua_         504 INVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNS----------TL-----QSEVKPILE  564 (588)
T ss_dssp             HHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHH----------HH-----HHHHHHHHH
T ss_pred             HHHHHHHcChH----HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcH----------hH-----HHHHHHHHH
Confidence            99887632222    234458999999999999999999999999997543321          11     233467888


Q ss_pred             HhhcCCCHHHHHHHHHHHHHh
Q 043116          428 NLQSHDNNDIHEMSVKILETY  448 (482)
Q Consensus       428 ~l~~~~~~~v~~~a~~~l~~~  448 (482)
                      .++++++.+|+..|.+.++.+
T Consensus       565 ~L~~D~d~dVr~~A~~al~~l  585 (588)
T d1b3ua_         565 KLTQDQDVDVKYFAQEALTVL  585 (588)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHT
T ss_pred             HHcCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.1e-15  Score=152.30  Aligned_cols=382  Identities=11%  Similarity=0.078  Sum_probs=280.3

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      .++.+.++++++++.++..++..+..++..-.    .......+++.+..++++++ +.+|..|+.++..++...+..  
T Consensus       165 l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~----~~~~~~~l~~~l~~l~~d~~-~~vr~~a~~~l~~i~~~~~~~--  237 (588)
T d1b3ua_         165 LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE----LDNVKSEIIPMFSNLASDEQ-DSVRLLAVEACVNIAQLLPQE--  237 (588)
T ss_dssp             HHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSC----HHHHHHTHHHHHHHHHTCSC-HHHHTTHHHHHHHHHHHSCHH--
T ss_pred             HHHHHHHHhccCCHHHHHHHHHHHHHHHHHhc----HHHHHHHHHHHHHHHhcCCc-hhhHHHHHHHHHHhhccCCHH--
Confidence            35667777788889999999999999887642    22344567888888888888 899999999999887532221  


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCC
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGK  187 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~  187 (482)
                       .....+++.+..++.+++..+|..++.+|++++....   .......+++.+...+ .+.+.+++..++..+..++..-
T Consensus       238 -~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~ll-~d~~~~vr~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         238 -DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEITKTDLVPAFQNLM-KDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             -HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHHHHHTHHHHHHHHH-TCSSHHHHHHHHHHHHHHHHTS
T ss_pred             -HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhhhhhhhhHHHHHHH-hccchHHHHHHHHHHHHHHHHH
Confidence             1122367888889999999999999999999873211   1223345677777777 6778899999999999998765


Q ss_pred             CCCCh--hhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhH
Q 043116          188 PQPPF--NQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGN  265 (482)
Q Consensus       188 ~~~~~--~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~  265 (482)
                      .....  .....++|.+...+.+.++.++..++.++..++..-..   ......+++.+...+.++++.++..++.++..
T Consensus       313 ~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         313 SADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccch---hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            33222  23467889999999999999999999888877632211   11223467888899999999999999888877


Q ss_pred             hhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcC-CHHHHHHHHHcCChHHHHHHHhcCChhHHHHH
Q 043116          266 IVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAG-NREQIQAVIDAGLIGPIVNLLQDAEFGTKKEA  344 (482)
Q Consensus       266 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a  344 (482)
                      +......  . -....+++.+..++.+. ++.+|..++.++..++.. ..+.    +...+.+.+..++.++...+|..|
T Consensus       390 ~~~~~~~--~-~~~~~ll~~l~~~~~d~-~~~~r~~~~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~D~~~~VR~~A  461 (588)
T d1b3ua_         390 VNEVIGI--R-QLSQSLLPAIVELAEDA-KWRVRLAIIEYMPLLAGQLGVEF----FDEKLNSLCMAWLVDHVYAIREAA  461 (588)
T ss_dssp             HHHHSCH--H-HHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHCGGG----CCHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHhhcch--h-hhhhHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHcChHh----HHHHHHHHHHhhccCCchhHHHHH
Confidence            7642211  1 11234678889999988 999999999999988751 1111    112345667777888899999999


Q ss_pred             HHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHH
Q 043116          345 AWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLE  424 (482)
Q Consensus       345 ~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  424 (482)
                      +.+++.++....++.    ....+++.+..+++++++..|..++.++..+.......               ......++
T Consensus       462 ~~~L~~l~~~~~~~~----~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~---------------~~~~~ilp  522 (588)
T d1b3ua_         462 TSNLKKLVEKFGKEW----AHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD---------------ITTKHMLP  522 (588)
T ss_dssp             HHHHHHHHHHHCHHH----HHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH---------------HHHHHTHH
T ss_pred             HHHHHHHHHHhCcHH----HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH---------------HHHHHHHH
Confidence            999999986433332    23347899999999999999999999999887643321               12334688


Q ss_pred             HHHHhhcCCCHHHHHHHHHHHHHhcCC
Q 043116          425 KIENLQSHDNNDIHEMSVKILETYWCG  451 (482)
Q Consensus       425 ~l~~l~~~~~~~v~~~a~~~l~~~~~~  451 (482)
                      .+.++..++.+.|+..+.+.+..++..
T Consensus       523 ~ll~~~~D~v~nVR~~a~~~l~~i~~~  549 (588)
T d1b3ua_         523 TVLRMAGDPVANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHGGGCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            889999999999999999988887643

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.6e-12  Score=135.53  Aligned_cols=360  Identities=13%  Similarity=0.151  Sum_probs=218.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChH-hHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSE-NTK  107 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~-~~~  107 (482)
                      ++.+.+.++++++..+..|+.+|..++.+. .+.....+ ..+++.++..+++++ +.+|..|+|+|+.++..... ...
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~-~~Vr~~a~~~l~~~~~~~~~~~~~  473 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKK-ALVRSITCWTLSRYAHWVVSQPPD  473 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSC-HHHHHHHHHHHHHTHHHHHSSCHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCC-HHHHHHHHHHHHHHHHHhhhhhhh
Confidence            455666777888999999999999887653 11111111 235788888999888 99999999999998752111 112


Q ss_pred             HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHHhCChHHHHHHHcchhhhhHHH------------
Q 043116          108 VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSS-RCRDFVLSQGALIPLLAELNEHAKLSMLR------------  174 (482)
Q Consensus       108 ~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~------------  174 (482)
                      .. -..+++.++..+.++++.++..|+++|.+++.... .....+-  .+++.++..+.. .+.....            
T Consensus       474 ~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~--~il~~l~~~l~~-~~~~~~~~~~~al~~l~~~  549 (888)
T d1qbkb_         474 TY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA--YILDTLVFAFSK-YQHKNLLILYDAIGTLADS  549 (888)
T ss_dssp             HH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHH--HHHHHHHHHTTT-CCHHHHHHHHHHHHHHHHH
T ss_pred             hh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHH--HHHHHHHHHHhh-hhHHHHHHHHHHHHHHHHh
Confidence            22 23578889999999999999999999999973211 0000000  012223322211 1111111            


Q ss_pred             ---------------------------------HHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc--------------
Q 043116          175 ---------------------------------TATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR--------------  207 (482)
Q Consensus       175 ---------------------------------~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~--------------  207 (482)
                                                       ....++..+................+.+...+.              
T Consensus       550 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         550 VGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             HGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             hhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence                                             112222222221111111111111121111111              


Q ss_pred             ---cCChhHHHHHHHHHHHhccCCcHH-HHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCch
Q 043116          208 ---SNDEKVLTDACRALAYLADGTNDK-IQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGAL  283 (482)
Q Consensus       208 ---~~~~~~~~~~l~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i  283 (482)
                         ..+.++...++.++..+...-... ...+....+++.+...+.+.++.++..|+.+++.++..........++ .++
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~-~~~  708 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIA-DFM  708 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHH-HHH
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHH-HHH
Confidence               123455556666666555322211 222333467888889999999999999999999998755544332222 367


Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcC--ChhHHHHHHHHHHHhhcCCCHHHHH
Q 043116          284 RYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDA--EFGTKKEAAWVISNATSGGTHEQIK  361 (482)
Q Consensus       284 ~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~  361 (482)
                      +.+...+.++ ...++..|+|+++.++....+.....++ .+++.|+.+++++  +..++.+++.+|+.++.. .++...
T Consensus       709 ~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~-~p~~~~  785 (888)
T d1qbkb_         709 PILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYV-CPQEVA  785 (888)
T ss_dssp             HHHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH-CHHHHG
T ss_pred             HHHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHH-CHHHHH
Confidence            7788888887 8899999999999998744444444333 4788888998864  355889999999999875 455433


Q ss_pred             HHHHcCChHHHHhcCC-CCCHHHHHHHHHHHHHHHHhchh
Q 043116          362 HLVREGCVKPLCDLLP-CPDPQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       362 ~l~~~~~l~~L~~ll~-~~~~~v~~~~l~~L~~l~~~~~~  400 (482)
                      ..+. .+++.++..+. ..|.+-+..++.++..++...+.
T Consensus       786 ~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~  824 (888)
T d1qbkb_         786 PMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS  824 (888)
T ss_dssp             GGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGG
T ss_pred             hhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcH
Confidence            2222 35565555554 35556677889999999876554

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-11  Score=132.89  Aligned_cols=407  Identities=12%  Similarity=0.084  Sum_probs=265.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           29 LPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        29 i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      |..|++.+++.|+++|+.|+..|.+......... ..-....+++.++++|++++ ++||..|+.||+.++...++..  
T Consensus         5 ~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~~~~-~~~~~~~i~~~ll~~L~D~~-~~Vq~~A~k~l~~l~~~~~~~~--   80 (1207)
T d1u6gc_           5 ISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKN-GEVQNLAVKCLGPLVSKVKEYQ--   80 (1207)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             HHHHHHhcCCCCHhHHHHHHHHHHHHHhhccccc-ChHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHHHhCcHhh--
Confidence            5678888999999999999999998876542111 11122347889999999999 9999999999999987544432  


Q ss_pred             HHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------hHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          109 AIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR------CRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       109 ~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                       . ..+++.|+..+.+++...+..+..+|..+...-+.      ....+ -..+++.+...+.+..+..++..++.++..
T Consensus        81 -~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~-~~~l~~~l~~~~~~~~~~~v~~~al~~l~~  157 (1207)
T d1u6gc_          81 -V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIMAD  157 (1207)
T ss_dssp             -H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             -H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Confidence             1 13578888888888888888888888776532111      11111 111344555555555677888889999998


Q ss_pred             hhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-CCCChhhHHHHHH
Q 043116          183 FCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-GHRSRLVLTAALR  261 (482)
Q Consensus       183 L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~v~~~a~~  261 (482)
                      +....+.........+++.+...+.++++.++..++.+|+.++...+..    .-..+++.++..+ .+.+...+..++.
T Consensus       158 l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         158 MLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            8876544444455778889999999999999999999999998654421    1123456666555 4455667778888


Q ss_pred             HHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHH----HHHHHHc--C-----------
Q 043116          262 TIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQ----IQAVIDA--G-----------  324 (482)
Q Consensus       262 ~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~----~~~l~~~--~-----------  324 (482)
                      +++.++...+...... -..+++.+...+.+. +.++|..+..++..++...+..    ...++..  .           
T Consensus       234 ~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~  311 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEY-LEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYD  311 (1207)
T ss_dssp             HHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------
T ss_pred             HHHHHHHHcchhhHHH-HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhh
Confidence            9998887544332111 136788999999988 8899999999998887633221    1111110  0           


Q ss_pred             -------------------ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116          325 -------------------LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT  385 (482)
Q Consensus       325 -------------------~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  385 (482)
                                         ..+.......+....+|..++.+|..++.... +.... .-..+++.+...+.+.++.++.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~-~~l~~-~~~~~~~~L~~~l~d~~~~vr~  389 (1207)
T d1u6gc_         312 DEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH-EMLPE-FYKTVSPALISRFKEREENVKA  389 (1207)
T ss_dssp             ------------------------------CTTHHHHHHHHHHHHHHTTCC-TTHHH-HHTTTHHHHHSTTSCSSSHHHH
T ss_pred             hHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHH-HHHHH-HHHHHHHHHHHHhcCCchHHHH
Confidence                               00001111123456789999999999987533 32222 2345889999999999999999


Q ss_pred             HHHHHHHHHHHhchhccccCC----CCcccHHHHHHHH--hchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          386 VCLIGLENILKVGEAEKNTDN----IGDVNQYAQLVEE--AEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       386 ~~l~~L~~l~~~~~~~~~~~~----~~~~~~~~~~l~~--~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      .++.++..++...........    ....+.....+..  ...++.+.....+.+..++..+..++..+..
T Consensus       390 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~  460 (1207)
T d1u6gc_         390 DVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVN  460 (1207)
T ss_dssp             HHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            999999988765332111000    0000001111211  1346667777888899998888888877653

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.1e-12  Score=131.00  Aligned_cols=345  Identities=14%  Similarity=0.172  Sum_probs=219.2

Q ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhh
Q 043116           43 VQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLL  122 (482)
Q Consensus        43 ~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  122 (482)
                      ++..+..+|..++...+.+...     -+++.+...+.+++ ...|+.|+.+++.++.+..+.....+. .+++.++..+
T Consensus       373 ~r~~a~~~L~~l~~~~~~~il~-----~~l~~l~~~l~s~~-~~~reaa~~alg~i~eg~~~~~~~~l~-~li~~l~~~l  445 (888)
T d1qbkb_         373 LRKCSAAALDVLANVYRDELLP-----HILPLLKELLFHHE-WVVKESGILVLGAIAEGCMQGMIPYLP-ELIPHLIQCL  445 (888)
T ss_dssp             SHHHHHHHSTTTTTTCCSSSHH-----HHHHHHHHTTTSSS-HHHHHHHHHHHHHHTTTSHHHHTTTHH-HHHHHHHHHT
T ss_pred             HHHHHHHHHhhHhhhhHHHHHH-----HHHHHHHHhhccch-hHHHHHHHHHhhhhhhhHHHHhcccch-hhhHHHHHhc
Confidence            4666667776666554222111     13455667777888 799999999999998765543322222 3578888999


Q ss_pred             CCCCHHHHHHHHHHHHHhhCCCh-hhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHH
Q 043116          123 ASPSDDVREQAVWALGNVAGDSS-RCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRV  201 (482)
Q Consensus       123 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~  201 (482)
                      .++++.+|..++|+|+.++.... ...+.. -...++.++..+ .+.++.++..++++|.+++.............+++.
T Consensus       446 ~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l-~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~  523 (888)
T d1qbkb_         446 SDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRI-LDSNKRVQEAACSAFATLEEEACTELVPYLAYILDT  523 (888)
T ss_dssp             TSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHH-SSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence            99999999999999999873211 111111 224577777777 566788999999999999976544444556777888


Q ss_pred             HHHHhccCChhHHHHHHHHHHHhccC------CcHHHHHHHH-------------------------------hCc----
Q 043116          202 LAQLIRSNDEKVLTDACRALAYLADG------TNDKIQAVIE-------------------------------AGV----  240 (482)
Q Consensus       202 L~~ll~~~~~~~~~~~l~~L~~l~~~------~~~~~~~~~~-------------------------------~~~----  240 (482)
                      +...+...+...+..+..++..++..      .+.....+..                               .++    
T Consensus       524 l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~  603 (888)
T d1qbkb_         524 LVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYC  603 (888)
T ss_dssp             HHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhH
Confidence            88887776666555555555544321      1111111000                               000    


Q ss_pred             ---HHHHHHhh-----------------CCCChhhHHHHHHHHhHhhcCChhhH-HHHHhcCchHHHHHHhcCCCchhHH
Q 043116          241 ---CPRLVKLL-----------------GHRSRLVLTAALRTIGNIVTGDDFQT-QCIINCGALRYLLGLLIHNHNKSIK  299 (482)
Q Consensus       241 ---l~~L~~ll-----------------~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~~~i~~L~~ll~~~~~~~v~  299 (482)
                         ++.++..+                 ...+..+...++.+++.++....... ..+....+++.+...+++. ++.+|
T Consensus       604 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr  682 (888)
T d1qbkb_         604 EPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVR  682 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHH
Confidence               00111110                 01123344445555555554222222 2233445777888888888 89999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC
Q 043116          300 KEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP  379 (482)
Q Consensus       300 ~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~  379 (482)
                      ..|..+++.++...+......++ .+++.+...+.++...++..++|+++.++.....+...++-  .+++.|+..++++
T Consensus       683 ~~a~~llgdl~~~~~~~~~~~l~-~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~--~il~~L~~il~~~  759 (888)
T d1qbkb_         683 QSSFALLGDLTKACFQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP--MVLHQLVEIINRP  759 (888)
T ss_dssp             HHHHHHHHHHHHHCGGGTGGGHH-HHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSH--HHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHH-HHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHcCC
Confidence            99999999998755554444443 37777888788888899999999999998754444333322  3677888888765


Q ss_pred             C--HHHHHHHHHHHHHHHHhchh
Q 043116          380 D--PQIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       380 ~--~~v~~~~l~~L~~l~~~~~~  400 (482)
                      +  ..++++++.+|+++....+.
T Consensus       760 ~~~~~v~~n~~~~lgrl~~~~p~  782 (888)
T d1qbkb_         760 NTPKTLLENTAITIGRLGYVCPQ  782 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHCHH
T ss_pred             CccHHHHHHHHHHHHHHHHHCHH
Confidence            4  45889999999999876554

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=1.8e-10  Score=101.91  Aligned_cols=256  Identities=14%  Similarity=0.084  Sum_probs=193.4

Q ss_pred             cCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhH
Q 043116           69 SGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCR  148 (482)
Q Consensus        69 ~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~  148 (482)
                      ....+.|+++|++++ +.+|..|+.+|+.+..  +         ..++.|+.+++++++.+|..|+.+|+.+...... .
T Consensus        18 ~~~~~~L~~~L~d~~-~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~-~   84 (276)
T d1oyza_          18 KLNDDELFRLLDDHN-SLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKC-E   84 (276)
T ss_dssp             TSCHHHHHHHTTCSS-HHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTT-H
T ss_pred             cCCHHHHHHHhcCCC-HHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhcccccc-c
Confidence            345778999999999 9999999999998853  2         3479999999999999999999999998643322 1


Q ss_pred             HHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCC
Q 043116          149 DFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGT  228 (482)
Q Consensus       149 ~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~  228 (482)
                      ..     .++.++..+.++.++.++..++.+|..++...+    ......++.+...+.+.++.++..++.+++.+..  
T Consensus        85 ~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--  153 (276)
T d1oyza_          85 DN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--  153 (276)
T ss_dssp             HH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC----
T ss_pred             cc-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccc----hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--
Confidence            11     244566666578889999999999999886542    2235678888888889999999999888876542  


Q ss_pred             cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          229 NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       229 ~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                               ...++.+..++.+.++.++..+...+..+......         ..+.+...+.+. +..++..+.+++..
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~~~~~~~~~al~~  214 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDK-NEEVRIEAIIGLSY  214 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCS-CHHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhh-hhhhhhhhccccch
Confidence                     24567788888888999999888888877664443         334567777777 88899999999877


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHH
Q 043116          309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVC  387 (482)
Q Consensus       309 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~  387 (482)
                      +..           ...++.|++.+.+  +.++..++++|+.+..   +         +.++.|..++.. ++.+++..+
T Consensus       215 ~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~---~---------~~~~~L~~~l~~~~d~~vr~~A  269 (276)
T d1oyza_         215 RKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD---K---------TLLPVLDTMLYKFDDNEIITSA  269 (276)
T ss_dssp             TTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC---G---------GGHHHHHHHHTTSSCCHHHHHH
T ss_pred             hhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC---H---------HHHHHHHHHHccCCCHHHHHHH
Confidence            632           2367777777764  5688999999998753   2         367778776765 567899888


Q ss_pred             HHHHH
Q 043116          388 LIGLE  392 (482)
Q Consensus       388 l~~L~  392 (482)
                      ++.|.
T Consensus       270 ~~~L~  274 (276)
T d1oyza_         270 IDKLK  274 (276)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            88764

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=1.1e-09  Score=96.72  Aligned_cols=253  Identities=12%  Similarity=0.063  Sum_probs=185.9

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHH
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTK  107 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~  107 (482)
                      ..+.|+++|+++++.++..|+..|..+...            ..++.++.++++++ +.+|..|+.+|+.+.... ....
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~------------~~~~~l~~~l~d~~-~~vr~~a~~aL~~l~~~~-~~~~   85 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKN-YIRRDIGAFILGQIKICK-KCED   85 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSS-HHHHHHHHHHHHHSCCCT-TTHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCCH------------hHHHHHHHHHcCCC-HHHHHHHHHHHHHhcccc-cccc
Confidence            567899999999999999999999877432            25799999999999 999999999999986532 2212


Q ss_pred             HHHhCCChHHHHH-hhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcC
Q 043116          108 VAIDHGAVPIFVK-LLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRG  186 (482)
Q Consensus       108 ~~~~~g~i~~L~~-ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~  186 (482)
                      .     .++.+.. +++++++.++..++.+|++++...+.....     .++.+...+ .+.+..++..++.++..... 
T Consensus        86 ~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~~~-----~~~~l~~~~-~d~~~~vr~~a~~~l~~~~~-  153 (276)
T d1oyza_          86 N-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPK-----IVEQSQITA-FDKSTNVRRATAFAISVIND-  153 (276)
T ss_dssp             H-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHHT-TCSCHHHHHHHHHHHHTC---
T ss_pred             c-----hHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhhHH-----HHHHHHHHh-cCcchHHHHHHHHHHhhcch-
Confidence            1     1233333 567899999999999999998554433222     344555555 56677788888877765432 


Q ss_pred             CCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHh
Q 043116          187 KPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNI  266 (482)
Q Consensus       187 ~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l  266 (482)
                               ...++.+..++...++.++..+..++..+......         ..+.+...+.+.+..++..+..+++.+
T Consensus       154 ---------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         154 ---------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             ----------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             ---------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cchhhhhhhhhhhhhhhhhhccccchh
Confidence                     23456788888888999998888888877755432         235577778889999999999988776


Q ss_pred             hcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhc-CChhHHHHHH
Q 043116          267 VTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQD-AEFGTKKEAA  345 (482)
Q Consensus       267 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~-~~~~~~~~a~  345 (482)
                      ..           ...++.|+..+.++   .+|..++++|+.+.  ++         +.++.|..++.+ ++.+++..|+
T Consensus       216 ~~-----------~~~~~~L~~~l~d~---~vr~~a~~aL~~ig--~~---------~~~~~L~~~l~~~~d~~vr~~A~  270 (276)
T d1oyza_         216 KD-----------KRVLSVLCDELKKN---TVYDDIIEAAGELG--DK---------TLLPVLDTMLYKFDDNEIITSAI  270 (276)
T ss_dssp             TC-----------GGGHHHHHHHHTSS---SCCHHHHHHHHHHC--CG---------GGHHHHHHHHTTSSCCHHHHHHH
T ss_pred             hh-----------hhhHHHHHHHhCCh---HHHHHHHHHHHHcC--CH---------HHHHHHHHHHccCCCHHHHHHHH
Confidence            42           23577788888654   58999999999884  22         477888888875 5788999888


Q ss_pred             HHHH
Q 043116          346 WVIS  349 (482)
Q Consensus       346 ~aL~  349 (482)
                      .+|.
T Consensus       271 ~~L~  274 (276)
T d1oyza_         271 DKLK  274 (276)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8763

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=7e-10  Score=105.45  Aligned_cols=389  Identities=11%  Similarity=0.064  Sum_probs=244.5

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhH-HH
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENT-KV  108 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~-~~  108 (482)
                      .+++.+.++|.+.+..|-..|..+...+ .        .+++..+...+.+++ ...+|..|+-.|.+......... ..
T Consensus         4 ~il~~~~s~d~~~r~~A~~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~   74 (458)
T d1ibrb_           4 TILEKTVSPDRLELEAAQKFLERAAVEN-L--------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQ   74 (458)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHH
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhH
Confidence            4556666899999999999999988653 1        125667777776543 26788889888888775432221 11


Q ss_pred             H----------HhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hhhhHHHHHH
Q 043116          109 A----------IDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AKLSMLRTAT  177 (482)
Q Consensus       109 ~----------~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~~~~~~~a~  177 (482)
                      .          ....+.+.++..+.++++..+ .+..+++.++......   -.-.+.++.++..+... .+...+..++
T Consensus        75 ~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~l  150 (458)
T d1ibrb_          75 YQQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKESTL  150 (458)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHHHH
T ss_pred             HhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCc---ccCcchhHHHHHHHHhhcchHHHHHHHH
Confidence            1          111234556677666554333 3444554443110000   00013466677766432 3445667788


Q ss_pred             HHHHHhhcCC-CCCChhhhhhHHHHHHHHhccC--ChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhhCCCCh
Q 043116          178 WTLSNFCRGK-PQPPFNQIRPALRVLAQLIRSN--DEKVLTDACRALAYLADGTNDKIQ-AVIEAGVCPRLVKLLGHRSR  253 (482)
Q Consensus       178 ~~L~~L~~~~-~~~~~~~~~~~~~~L~~ll~~~--~~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~  253 (482)
                      .++..++... +.........+++.+...+.++  +.+++..++.++..+......... ......+.+.+...+.++++
T Consensus       151 ~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  230 (458)
T d1ibrb_         151 EAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDT  230 (458)
T ss_dssp             HHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCH
Confidence            8888888654 3333445567888888888754  467999999999998865443211 12223456677788889999


Q ss_pred             hhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHH--------------
Q 043116          254 LVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQA--------------  319 (482)
Q Consensus       254 ~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~--------------  319 (482)
                      +++..++.++..++...+......+.....+.+.....+. +..++..++..+..++.........              
T Consensus       231 ~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~  309 (458)
T d1ibrb_         231 RVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHT  309 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCC
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHH
Confidence            9999999999999876554433223333444555666666 8889999999888886421111100              


Q ss_pred             ------HHHcCChHHHHHHHh-------cCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHH
Q 043116          320 ------VIDAGLIGPIVNLLQ-------DAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTV  386 (482)
Q Consensus       320 ------l~~~~~i~~L~~ll~-------~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~  386 (482)
                            .....+++.+.+.+.       +.+..++..+..++..++.....+....     +++.+.+.++++++.++..
T Consensus       310 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~-----l~~~i~~~l~s~~~~~r~a  384 (458)
T d1ibrb_         310 SKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPH-----VLPFIKEHIKNPDWRYRDA  384 (458)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHHHH-----HHHHHHHHTTCSSHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhhhH-----HHHHHHHHhcCCCHHHHHH
Confidence                  001123344444433       2234578888888888876433333332     5677888899999999999


Q ss_pred             HHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          387 CLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       387 ~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      ++.+|..+.........       .++.     ...++.|.....++++.|+..|.+.+.++.+
T Consensus       385 al~~l~~i~~~~~~~~~-------~~~l-----~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~  436 (458)
T d1ibrb_         385 AVMAFGCILEGPEPSQL-------KPLV-----IQAMPTLIELMKDPSVVVRDTAAWTVGRICE  436 (458)
T ss_dssp             HHHHHHHTSSSSCTTTT-------CTTT-----TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHhHH-------HHHH-----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999988753322111       0111     2346778888899999999999999988753

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-10  Score=108.90  Aligned_cols=364  Identities=12%  Similarity=0.071  Sum_probs=226.3

Q ss_pred             hccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHHHH-----------HhcCCHHHHHHhhcCCCChHHHHHHH
Q 043116           26 FEILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIEKV-----------IQSGVVPRFVEFLMREDYPQLQFEAA   92 (482)
Q Consensus        26 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~~~-----------~~~g~~~~L~~ll~~~~~~~v~~~a~   92 (482)
                      .+-+..+...+.++  +..++..|+..|.+..... .......           ....+.+.+++.+.+++ +. +..++
T Consensus        33 ~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~-~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~-~~-~~~~~  109 (458)
T d1ibrb_          33 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLQTLGTET-YR-PSSAS  109 (458)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCC-SS-SCSHH
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-CchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCc-HH-HHHHH
Confidence            34567777777543  5788889999999888764 2111111           12234555677776665 33 33455


Q ss_pred             HHHHHHhCCChHhHHHHHhCCChHHHHHhhCC--CCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hh
Q 043116           93 RALTNIASGTSENTKVAIDHGAVPIFVKLLAS--PSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AK  169 (482)
Q Consensus        93 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~  169 (482)
                      .+++.++...  ... -...+.++.+...+.+  .+...+..++.++..++.........-.....++.++..+... .+
T Consensus       110 ~~~~~i~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~  186 (458)
T d1ibrb_         110 QCVAGIACAE--IPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS  186 (458)
T ss_dssp             HHHHHHHHHH--GGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCC
T ss_pred             HHHHHHHHHh--CCc-ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccC
Confidence            5666555411  000 0113567888887754  4567888889998888732211100000112356666666432 35


Q ss_pred             hhHHHHHHHHHHHhhcCCC--CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116          170 LSMLRTATWTLSNFCRGKP--QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL  247 (482)
Q Consensus       170 ~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  247 (482)
                      ..++..++.++.++....+  ...........+.+...+.+++++++..++.++..++..........+.......+...
T Consensus       187 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~  266 (458)
T d1ibrb_         187 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  266 (458)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            6788889999998886542  12222334567778888889999999999999999886554332222222334455566


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHH--------------------HHhcCchHHHHHHhcC------CCchhHHHH
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQC--------------------IINCGALRYLLGLLIH------NHNKSIKKE  301 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------l~~~~~i~~L~~ll~~------~~~~~v~~~  301 (482)
                      +.+.++.++..++..+..++.........                    .....+.+.+...+.+      ..+..++..
T Consensus       267 ~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  346 (458)
T d1ibrb_         267 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA  346 (458)
T ss_dssp             HHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHH
Confidence            77888889999998888876422111100                    0111234445555432      113458888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP  381 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  381 (482)
                      +..++..++...++..   ++ .+++.+.+.+.++++.+|..++.+|+.++....+..... .-..+++.+...++++++
T Consensus       347 a~~~l~~l~~~~~~~~---~~-~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~  421 (458)
T d1ibrb_         347 AGVCLMLLATCCEDDI---VP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSV  421 (458)
T ss_dssp             HHHHHHHHHHHTTTTH---HH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCH
T ss_pred             HHHHHHHHHHhccHhh---hh-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCH
Confidence            8888888876222211   11 255667777888999999999999999986533322111 123478899999999999


Q ss_pred             HHHHHHHHHHHHHHHhchh
Q 043116          382 QIVTVCLIGLENILKVGEA  400 (482)
Q Consensus       382 ~v~~~~l~~L~~l~~~~~~  400 (482)
                      .||..|+++|+++......
T Consensus       422 ~VR~~a~~~l~~i~~~~~~  440 (458)
T d1ibrb_         422 VVRDTAAWTVGRICELLPE  440 (458)
T ss_dssp             HHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            9999999999999876544

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.14  E-value=3e-08  Score=101.84  Aligned_cols=387  Identities=11%  Similarity=0.067  Sum_probs=241.4

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCChHhHHH-
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTSENTKV-  108 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~-  108 (482)
                      .|...+.++|+.++..|-..|.++...+ .        .+++..+.+.+.+.+ ...+|..|+-.|.|........... 
T Consensus         9 ~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~   79 (861)
T d2bpta1           9 LLENSILSPDQNIRLTSETQLKKLSNDN-F--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVKTQQ   79 (861)
T ss_dssp             HHHHHHHCSSHHHHHHHHHHHHHHHHHC-H--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhh
Confidence            3445567889999999999998887643 1        235677788776543 3678888988888876533221110 


Q ss_pred             ----H---H----hCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC-hh--hHHHHHHhCChHHHHHHHcchhhhhHHH
Q 043116          109 ----A---I----DHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS-SR--CRDFVLSQGALIPLLAELNEHAKLSMLR  174 (482)
Q Consensus       109 ----~---~----~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~-~~--~~~~~~~~~~i~~l~~~l~~~~~~~~~~  174 (482)
                          .   +    ...+-..++..+.++++.+|..+..+++.++... +.  ..      ..++.++..+....+...+.
T Consensus        80 ~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp------eli~~L~~~~~s~~~~~~~~  153 (861)
T d2bpta1          80 FAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP------ELMKIMVDNTGAEQPENVKR  153 (861)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH------HHHHHHHHHTSTTSCHHHHH
T ss_pred             HHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH------HHHHHHHHHhcCCCcHHHHH
Confidence                0   0    0112356677788889999999999999987321 11  00      13556666664444556777


Q ss_pred             HHHHHHHHhhcCCCCCChh---hhhhHHHHHHHHhc--cCChhHHHHHHHHHHHhccCCcHHHH-HHHHhCcHHHHHHhh
Q 043116          175 TATWTLSNFCRGKPQPPFN---QIRPALRVLAQLIR--SNDEKVLTDACRALAYLADGTNDKIQ-AVIEAGVCPRLVKLL  248 (482)
Q Consensus       175 ~a~~~L~~L~~~~~~~~~~---~~~~~~~~L~~ll~--~~~~~~~~~~l~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll  248 (482)
                      .++.+|..++.........   ....+++.+...+.  ..+..++..++.++.++...-..... ......+++.+...+
T Consensus       154 ~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~  233 (861)
T d2bpta1         154 ASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEAT  233 (861)
T ss_dssp             HHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHh
Confidence            7889999998765332222   22455555555554  34578999999999988865433221 112224567788888


Q ss_pred             CCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHH------
Q 043116          249 GHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVID------  322 (482)
Q Consensus       249 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~------  322 (482)
                      .++++.++..++.++..++...+......+..-+...+....++. ++.++..+...+..++............      
T Consensus       234 ~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~  312 (861)
T d2bpta1         234 QAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSP-NDKVASMTVEFWSTICEEEIDIAYELAQFPQSPL  312 (861)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999875544333333222333344555555 8889999998888876421111111111      


Q ss_pred             ----------cCChHHHHHHHhc-------CChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHH
Q 043116          323 ----------AGLIGPIVNLLQD-------AEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVT  385 (482)
Q Consensus       323 ----------~~~i~~L~~ll~~-------~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~  385 (482)
                                ..+++.+...+..       .+...+..+..++..+...........     ..+.+.....++++..+.
T Consensus       313 ~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  387 (861)
T d2bpta1         313 QSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEP-----VLEFVEQNITADNWRNRE  387 (861)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHH-----HHHHHHHHTTCSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhhh-----hcchhhhhhhhHHHHHHH
Confidence                      1234555555542       233566777777776654322111111     345566677889999999


Q ss_pred             HHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcC
Q 043116          386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       386 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      .+..++..+.......          .....+  ...++.+.+...++++.++..+.+.+.++..
T Consensus       388 ~a~~~l~~i~~~~~~~----------~~~~~l--~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~  440 (861)
T d2bpta1         388 AAVMAFGSIMDGPDKV----------QRTYYV--HQALPSILNLMNDQSLQVKETTAWCIGRIAD  440 (861)
T ss_dssp             HHHHHHHHTSSSSCHH----------HHHHHH--HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcchh----------hHHHHH--HHHHHHHHHHhcCcchhhhhHHHHHHHHHHH
Confidence            9998888887533221          111111  2346778888899999999999988876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=4.3e-10  Score=120.74  Aligned_cols=352  Identities=13%  Similarity=0.101  Sum_probs=221.3

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHH
Q 043116           72 VPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFV  151 (482)
Q Consensus        72 ~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  151 (482)
                      +..|++-+.++| +++|..|+.-|.+......-..+.-....+++.++++|.+.++++|..|+.+|+.++...++.  .+
T Consensus         5 ~~~ll~k~~~~D-~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~--~~   81 (1207)
T d1u6gc_           5 ISNLLEKMTSSD-KDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEY--QV   81 (1207)
T ss_dssp             HHHHHHHTTCSS-HHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHH--HH
T ss_pred             HHHHHHhcCCCC-HhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHh--hH
Confidence            455677788999 999999998888765422111000011236789999999999999999999999998665432  11


Q ss_pred             HHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC------CChhhhhhHHHHHHHHhc-cCChhHHHHHHHHHHHh
Q 043116          152 LSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ------PPFNQIRPALRVLAQLIR-SNDEKVLTDACRALAYL  224 (482)
Q Consensus       152 ~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~------~~~~~~~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l  224 (482)
                        ..+++.|+..+ .+.+...+..+..+|..+...-+.      ........+++.+...+. ..++.++..++.++..+
T Consensus        82 --~~l~~~L~~~l-~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          82 --ETIVDTLCTNM-LSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             --HHHHHHHHHHT-TCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHh-cCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence              12466777776 444556666677777666543211      111223445555555554 45678899999988887


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHH
Q 043116          225 ADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCW  304 (482)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~  304 (482)
                      .......... ....+++.++..+.++++.+|..|+.+|+.++...+..    .-..+++.++..+....+..++..++.
T Consensus       159 ~~~~g~~l~~-~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         159 LSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             HHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             HHHhhHhhHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence            6432211100 01235678888899999999999999999998754432    112456677766655446677888888


Q ss_pred             HHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHh----------
Q 043116          305 IISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCD----------  374 (482)
Q Consensus       305 ~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~----------  374 (482)
                      +++.++...+......+ ..+++.+++.+.+++++++..++.++..++.....+...++.+  .++.+..          
T Consensus       234 ~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~--ii~~~l~~l~~dp~~~~  310 (1207)
T d1u6gc_         234 CIAAISRQAGHRIGEYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST--IINICLKYLTYDPNYNY  310 (1207)
T ss_dssp             HHHHHHHHSSGGGTTSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHH--HHHHHTTCCCCC-----
T ss_pred             HHHHHHHHcchhhHHHH-HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHH--HHHHHHHHHhcCcchhh
Confidence            89888864333222211 3578889999999999999999999999876442211111100  1111111          


Q ss_pred             ---------------------------cCCCCCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHH
Q 043116          375 ---------------------------LLPCPDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIE  427 (482)
Q Consensus       375 ---------------------------ll~~~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  427 (482)
                                                 ...+..+.++..+..+|..++...+..           ....  -...++.+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~-----------l~~~--~~~~~~~L~  377 (1207)
T d1u6gc_         311 DDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEM-----------LPEF--YKTVSPALI  377 (1207)
T ss_dssp             -------------------------------CTTHHHHHHHHHHHHHHTTCCTT-----------HHHH--HTTTHHHHH
T ss_pred             hhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHH-----------HHHH--HHHHHHHHH
Confidence                                       122344578888999998887543221           1221  234567777


Q ss_pred             HhhcCCCHHHHHHHHHHHHHhcC
Q 043116          428 NLQSHDNNDIHEMSVKILETYWC  450 (482)
Q Consensus       428 ~l~~~~~~~v~~~a~~~l~~~~~  450 (482)
                      ....+.++.++..+...+..+..
T Consensus       378 ~~l~d~~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         378 SRFKEREENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             STTSCSSSHHHHHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHH
Confidence            77888888888888777766553

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=1e-08  Score=105.31  Aligned_cols=396  Identities=11%  Similarity=0.122  Sum_probs=228.6

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHH
Q 043116           31 TMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKVAI  110 (482)
Q Consensus        31 ~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~  110 (482)
                      .+...+.+++...+..++..+..+.... ......-.-..+++.++..+.+++ +.++..++++++.++...+   ..+.
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~-~~~~~~~~l~~~l~~l~~~l~d~~-~~vr~~a~~~l~~l~~~~~---~~~~  447 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGP-DKVQRTYYVHQALPSILNLMNDQS-LQVKETTAWCIGRIADSVA---ESID  447 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSS-CHHHHHHHHHHHHHHHHHGGGCSC-HHHHHHHHHHHHHHHHHHG---GGSC
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhc-chhhHHHHHHHHHHHHHHHhcCcc-hhhhhHHHHHHHHHHHHhc---hhhh
Confidence            3344456778888988999998888754 222222223447889999999998 9999999999999875221   1112


Q ss_pred             hCCChHHHHHhh---CCCCHHHHHHHHHHHHHhhCC----Ch-hhHHHHHHhCChHHHHHHHcc-hhhhhHHHHHHHHHH
Q 043116          111 DHGAVPIFVKLL---ASPSDDVREQAVWALGNVAGD----SS-RCRDFVLSQGALIPLLAELNE-HAKLSMLRTATWTLS  181 (482)
Q Consensus       111 ~~g~i~~L~~ll---~~~~~~~~~~a~~~L~~l~~~----~~-~~~~~~~~~~~i~~l~~~l~~-~~~~~~~~~a~~~L~  181 (482)
                      ....++.++..+   ...++.++..+.+++..++..    .. .......  ..+..++..... ..+..++..+..++.
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~al~  525 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVEQLAEATPSPIYNFYP--ALVDGLIGAANRIDNEFNARASAFSALT  525 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHH--HHHHHHHHHHTCSCCGGGHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHHHhhhcccchhhHHHh--hHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            223344433322   135677788888887777521    11 1111110  123344444422 345567777888888


Q ss_pred             HhhcCCCCCChhhhhhHHHHHHHHhc----cCC-----------hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHH
Q 043116          182 NFCRGKPQPPFNQIRPALRVLAQLIR----SND-----------EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVK  246 (482)
Q Consensus       182 ~L~~~~~~~~~~~~~~~~~~L~~ll~----~~~-----------~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~  246 (482)
                      .+....+.........+.+.+...+.    ...           ..++..++.++..+............ ..+++.+..
T Consensus       526 ~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~l~~~l~~  604 (861)
T d2bpta1         526 TMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA-DMLMGLFFR  604 (861)
T ss_dssp             HHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHH
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHHHH-HHHHHHHhh
Confidence            88776544433333444444443332    211           12334444445444422221111111 134556666


Q ss_pred             hhCC-CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Q 043116          247 LLGH-RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGL  325 (482)
Q Consensus       247 ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~  325 (482)
                      .+.. ++..++..++.+++.++..........+. .+++.+...+++. ++.++..|+.+++.++...++......+ .+
T Consensus       605 ~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~-~i~p~l~~~l~~~-~~~v~~~a~~~l~~i~~~~~~~~~~~~~-~i  681 (861)
T d2bpta1         605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE-TFSPYLLKALNQV-DSPVSITAVGFIADISNSLEEDFRRYSD-AM  681 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHHTGGGGHHHHH-HH
T ss_pred             hcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH-HHhhHHHHHhCCC-CHHHHHHHHHHHHHHHHHhHHHhHhhHH-HH
Confidence            6644 45678889999999888754443333332 4788899999988 8889999999999998754444444443 47


Q ss_pred             hHHHHHHHhcC--ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCC----CH-------HHHHHHHHHHH
Q 043116          326 IGPIVNLLQDA--EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCP----DP-------QIVTVCLIGLE  392 (482)
Q Consensus       326 i~~L~~ll~~~--~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~----~~-------~v~~~~l~~L~  392 (482)
                      ++.|++.+.+.  +..++..++.+++.++........+++-.  +++.+.+.+...    +.       .+++.++.++.
T Consensus       682 ~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  759 (861)
T d2bpta1         682 MNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLND--IMALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYV  759 (861)
T ss_dssp             HHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHH--HHHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHhCcCCCcccHHHHHHHHHHHHHHHHHHH
Confidence            88888888754  56889999999999876433333343322  455555544322    21       36677777777


Q ss_pred             HHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhc----CCCHHHHHHHHHHHHHhc
Q 043116          393 NILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQS----HDNNDIHEMSVKILETYW  449 (482)
Q Consensus       393 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~----~~~~~v~~~a~~~l~~~~  449 (482)
                      .++.......     ....++...+     ++.+..+..    +.+.++...+..++..+.
T Consensus       760 ~i~~~~~~~~-----~~~~p~~~~i-----~~~i~~~~~~~~~~~~~~~~~~~~~~i~~l~  810 (861)
T d2bpta1         760 GIVAGLHDKP-----EALFPYVGTI-----FQFIAQVAEDPQLYSEDATSRAAVGLIGDIA  810 (861)
T ss_dssp             HHHHHTTTCH-----HHHGGGHHHH-----HHHHHHHHHCHHHHTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCH-----HHHHHHHHHH-----HHHHHHHHhCCccCCCHHHHHHHHHHHHHHH
Confidence            7765322110     0112223322     333444433    356777788887776544

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=8.6e-08  Score=98.61  Aligned_cols=401  Identities=12%  Similarity=0.070  Sum_probs=245.5

Q ss_pred             hccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCCcHH-----------HHHhcCCHHHHHHhhcCCCChHHHHHHH
Q 043116           26 FEILPTMVAGVWSD--DNKVQLEATTLFRKMLSFDRNSPIE-----------KVIQSGVVPRFVEFLMREDYPQLQFEAA   92 (482)
Q Consensus        26 ~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~~~~~~~-----------~~~~~g~~~~L~~ll~~~~~~~v~~~a~   92 (482)
                      .+-+..|.+.+.+.  +..++..|+..|.|..... .....           .-....+...+++.+.+++  .++..++
T Consensus        34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~-~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~--~~~~~~a  110 (876)
T d1qgra_          34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSK-DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTET--YRPSSAS  110 (876)
T ss_dssp             HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCC--SSSCHHH
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhcc-ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCc--HHHHHHH
Confidence            45567777777543  5788999999999988653 11110           0112334556777777766  3556678


Q ss_pred             HHHHHHhCCChHhHHHHHhCCChHHHHHhhCCC--CHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcch-hh
Q 043116           93 RALTNIASGTSENTKVAIDHGAVPIFVKLLASP--SDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEH-AK  169 (482)
Q Consensus        93 ~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~-~~  169 (482)
                      .+++.++..  +.... ...++++.|...+.++  +..++..++.+|..++.......-.-....+++.++..+... .+
T Consensus       111 ~~i~~i~~~--~~p~~-~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~  187 (876)
T d1qgra_         111 QCVAGIACA--EIPVN-QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS  187 (876)
T ss_dssp             HHHHHHHHH--HGGGT-CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred             HHHHHHHHH--HCCcc-ccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCcc
Confidence            888888752  11000 0135788888888654  467888999999999843221100000112466667766432 34


Q ss_pred             hhHHHHHHHHHHHhhcCCC--CCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHh
Q 043116          170 LSMLRTATWTLSNFCRGKP--QPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKL  247 (482)
Q Consensus       170 ~~~~~~a~~~L~~L~~~~~--~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~l  247 (482)
                      .+++..++.++.+......  .........+++.+...+.+++++++..++.++..+....++.........+...+...
T Consensus       188 ~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~  267 (876)
T d1qgra_         188 NNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEA  267 (876)
T ss_dssp             HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            5778888888887765531  11222234567778888889999999999999999986655544444444556667777


Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHH--------------------HHhcCchHHHHHHhcCC------CchhHHHH
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQC--------------------IINCGALRYLLGLLIHN------HNKSIKKE  301 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~--------------------l~~~~~i~~L~~ll~~~------~~~~v~~~  301 (482)
                      +.+..+.++..++..+..++.........                    .....+++.+...+...      .+..++..
T Consensus       268 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  347 (876)
T d1qgra_         268 MKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKA  347 (876)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHH
Confidence            78888888888888887776532211110                    01112334444444321      13357777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCH
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDP  381 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~  381 (482)
                      |..++..++...+..   +++ .+++.+.+.+.+.+...+..++.+++.+............. ...++.+...+.++++
T Consensus       348 a~~~l~~l~~~~~~~---~~~-~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~l~~~l~d~~~  422 (876)
T d1qgra_         348 AGVCLMLLATCCEDD---IVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDPSV  422 (876)
T ss_dssp             HHHHHHHHHHHHGGG---GHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHhhhh---hhh-hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHH-HHHHHHHHHhhcCCcc
Confidence            888877776421111   111 13444555566788999999999999998765555444322 2468888899999999


Q ss_pred             HHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhc
Q 043116          382 QIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYW  449 (482)
Q Consensus       382 ~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~  449 (482)
                      .++..+++++.++++........      ..+...+     ++.+.+.. ++++.++..+.+.+..+.
T Consensus       423 ~vr~~a~~~l~~~~~~~~~~~~~------~~~~~~~-----~~~l~~~l-~~~~~v~~~~~~~l~~l~  478 (876)
T d1qgra_         423 VVRDTAAWTVGRICELLPEAAIN------DVYLAPL-----LQCLIEGL-SAEPRVASNVCWAFSSLA  478 (876)
T ss_dssp             HHHHHHHHHHHHHHHHCGGGTSS------TTTHHHH-----HHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcchhhhh------HHHhhhH-----HHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            99999999999998765442211      1111111     33333333 346777777777666543

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=1.2e-06  Score=79.95  Aligned_cols=321  Identities=14%  Similarity=0.074  Sum_probs=208.4

Q ss_pred             ccHHHHHHHhc-CCCHHHHHHHHHHHHHHhcCCCCCcHH--HHH-hc--CCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVW-SDDNKVQLEATTLFRKMLSFDRNSPIE--KVI-QS--GVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~-s~~~~~~~~a~~~L~~l~~~~~~~~~~--~~~-~~--g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      ..+..+++++. ...+++....+..+..|....+ ....  ... ..  -.-+.+..++..++ .-+...+...+..++.
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~-~~~~~~~~~~~~~~~~~~~f~~~l~~~d-~~~~~~s~~i~~ll~~  151 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDK-YGDDTVKFFQEDPKQLEQLFDVSLKGDF-QTVLISGFNVVSLLVQ  151 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSS-SSHHHHHHHHHCTTHHHHHHHHCSCSSH-HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCc-chhHHHHHHhhCccchhHHHHHhccCch-hHHHHHHHHHHHHHHh
Confidence            36788999987 5678888888999999988752 2111  112 11  12345556666666 6677777888888877


Q ss_pred             CChHhH---HHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHH--hCChHHHHHHHcch--------
Q 043116          101 GTSENT---KVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLS--QGALIPLLAELNEH--------  167 (482)
Q Consensus       101 ~~~~~~---~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~i~~l~~~l~~~--------  167 (482)
                      .+....   +.+..  ....+-.+....+......|+.++..+... +.+|..+..  ...+++++..+...        
T Consensus       152 ~~~~~~~~~e~l~~--~~~~l~~l~~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~  228 (477)
T d1ho8a_         152 NGLHNVKLVEKLLK--NNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATR  228 (477)
T ss_dssp             TTTCCHHHHHHHHH--CHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC------
T ss_pred             ccccccchHHHHHH--hhHHHHHhhcccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccch
Confidence            543332   22222  234444455678888888899999988854 557777643  34566777776431        


Q ss_pred             --------hhhhHHHHHHHHHHHhhcCCCCCChhhh--hhHHHHHHHHhc-cCChhHHHHHHHHHHHhccCCcH-----H
Q 043116          168 --------AKLSMLRTATWTLSNFCRGKPQPPFNQI--RPALRVLAQLIR-SNDEKVLTDACRALAYLADGTND-----K  231 (482)
Q Consensus       168 --------~~~~~~~~a~~~L~~L~~~~~~~~~~~~--~~~~~~L~~ll~-~~~~~~~~~~l~~L~~l~~~~~~-----~  231 (482)
                              .+.+++.+++.+++-|+...........  .+.++.++.+++ +....+.+-++.++.|+......     .
T Consensus       229 ~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~  308 (477)
T d1ho8a_         229 IVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVI  308 (477)
T ss_dssp             -------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             hhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence                    1346788899999999986422222211  256788888886 56788999999999999865321     2


Q ss_pred             HHHHHHhCcHHHHHHhhCC--CChhhHHHHHHHHhHhh----------------------cCChhhH-HHHHh-------
Q 043116          232 IQAVIEAGVCPRLVKLLGH--RSRLVLTAALRTIGNIV----------------------TGDDFQT-QCIIN-------  279 (482)
Q Consensus       232 ~~~~~~~~~l~~L~~ll~~--~~~~v~~~a~~~L~~l~----------------------~~~~~~~-~~l~~-------  279 (482)
                      ...++..++++.+-.+...  .|+++.... ..|....                      .-+|.+. ..+..       
T Consensus       309 ~~~~v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~  387 (477)
T d1ho8a_         309 KQLLLLGNALPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFK  387 (477)
T ss_dssp             HHHHHHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGS
T ss_pred             HHHHHHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhc
Confidence            3345555666554443322  355443321 1221111                      0022222 22221       


Q ss_pred             ---cCchHHHHHHhcC---------CCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHH
Q 043116          280 ---CGALRYLLGLLIH---------NHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWV  347 (482)
Q Consensus       280 ---~~~i~~L~~ll~~---------~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~a  347 (482)
                         ..++..|+++|++         +.++.+..-||.=++.++...|..+..+-+.|+=..+|+++.++|++++.+|+.|
T Consensus       388 e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~a  467 (477)
T d1ho8a_         388 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  467 (477)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence               1358889999962         2277888899999999999878877777788999999999999999999999999


Q ss_pred             HHHhhc
Q 043116          348 ISNATS  353 (482)
Q Consensus       348 L~~l~~  353 (482)
                      +..+..
T Consensus       468 vQklm~  473 (477)
T d1ho8a_         468 TQAIIG  473 (477)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            998864

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=5e-07  Score=82.45  Aligned_cols=277  Identities=14%  Similarity=0.119  Sum_probs=180.1

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHH-hcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhCCChHhHHH
Q 043116           30 PTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVI-QSGVVPRFVEFLMREDYPQLQFEAARALTNIASGTSENTKV  108 (482)
Q Consensus        30 ~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~  108 (482)
                      +.+...+.+++.-....+...+..+++.. .......- .......+-.+...++ .+.+..|+.++..+.. .+++|..
T Consensus       125 ~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~-~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         125 QLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQ-MDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTC-HHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             HHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccc-cchHHHHHHHHHHHhc-CccHHHH
Confidence            44455566667767777777888887764 22222111 1112344444445666 7888899999999988 7889988


Q ss_pred             HHhC--CChHHHHHhhCC-----------------CCHHHHHHHHHHHHHhhCCChhhHHHHHHh--CChHHHHHHHcch
Q 043116          109 AIDH--GAVPIFVKLLAS-----------------PSDDVREQAVWALGNVAGDSSRCRDFVLSQ--GALIPLLAELNEH  167 (482)
Q Consensus       109 ~~~~--g~i~~L~~ll~~-----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--~~i~~l~~~l~~~  167 (482)
                      +...  ..++.+++.+..                 ....+...++.+++-++.+ +.....+.+.  +.++.++.++...
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~l~~~~~~~i~~l~~i~~~s  280 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKIT  280 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcC-HHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            7653  345566665532                 1246778899999999864 4444555444  3488888888778


Q ss_pred             hhhhHHHHHHHHHHHhhcCCCCCChh-----hh-hhHHHHHHHHhc--cCChhHHHHHHHHHH-------HhccC-----
Q 043116          168 AKLSMLRTATWTLSNFCRGKPQPPFN-----QI-RPALRVLAQLIR--SNDEKVLTDACRALA-------YLADG-----  227 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~~~~~~-----~~-~~~~~~L~~ll~--~~~~~~~~~~l~~L~-------~l~~~-----  227 (482)
                      ..+.+.+.++.++.|++.........     +. .++++.+-.+..  -.|+++....-..-.       .++..     
T Consensus       281 ~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~  360 (477)
T d1ho8a_         281 IKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVA  360 (477)
T ss_dssp             CSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            88999999999999999764222111     11 234444433332  235665544322211       11110     


Q ss_pred             ---------Cc-HHHHHHHH----------hCcHHHHHHhhC----------CCChhhHHHHHHHHhHhhcCChhhHHHH
Q 043116          228 ---------TN-DKIQAVIE----------AGVCPRLVKLLG----------HRSRLVLTAALRTIGNIVTGDDFQTQCI  277 (482)
Q Consensus       228 ---------~~-~~~~~~~~----------~~~l~~L~~ll~----------~~~~~v~~~a~~~L~~l~~~~~~~~~~l  277 (482)
                               ++ ...+.+..          ..++..|+.+|.          +.++.+..-||.=|+.++.+.|.....+
T Consensus       361 Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il  440 (477)
T d1ho8a_         361 ELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVL  440 (477)
T ss_dssp             HHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHH
T ss_pred             HHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHH
Confidence                     11 00011111          135788888885          2467788889999999999888887777


Q ss_pred             HhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhc
Q 043116          278 INCGALRYLLGLLIHNHNKSIKKEVCWIISNITA  311 (482)
Q Consensus       278 ~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~  311 (482)
                      -+.|+=..+++++.++ +++||.+|..++..+..
T Consensus       441 ~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         441 DKTGGKADIMELLNHS-DSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            7779989999999999 99999999999988765

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=5.1e-07  Score=92.62  Aligned_cols=316  Identities=16%  Similarity=0.177  Sum_probs=190.6

Q ss_pred             ccHHHHHHHhcCCC--HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCC-ChHHHHHHHHHHHHHhCCCh
Q 043116           27 EILPTMVAGVWSDD--NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMRED-YPQLQFEAARALTNIASGTS  103 (482)
Q Consensus        27 ~~i~~l~~~l~s~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~-~~~v~~~a~~~L~~l~~~~~  103 (482)
                      +.+|.+++.+.+++  +..+..++.+|..++..-..+ ...-....+++.+++.+.+++ +.+++..|+.++.+......
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~-~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  206 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE-QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  206 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH-HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhh
Confidence            46888888887544  667778889988887643111 111112346777888776543 26889999999988766333


Q ss_pred             HhHH-HHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChHHHHHHHcchhhhhHHHHHHHHHHH
Q 043116          104 ENTK-VAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALIPLLAELNEHAKLSMLRTATWTLSN  182 (482)
Q Consensus       104 ~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~  182 (482)
                      .... .....-+++.+...+.++++.++..+..++..++...+..-.......+...+.... .+.+.++...+...+..
T Consensus       207 ~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~  285 (876)
T d1qgra_         207 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAM-KSDIDEVALQGIEFWSN  285 (876)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHH-TCSSHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh-ccccHHHHHHHHHHHHH
Confidence            2211 111112457777888899999999999999999854443211111222222333333 44555666666666555


Q ss_pred             hhcCC----------------C-CCChh----hhhhHHHHHHHHhcc-------CChhHHHHHHHHHHHhccCCcHHHHH
Q 043116          183 FCRGK----------------P-QPPFN----QIRPALRVLAQLIRS-------NDEKVLTDACRALAYLADGTNDKIQA  234 (482)
Q Consensus       183 L~~~~----------------~-~~~~~----~~~~~~~~L~~ll~~-------~~~~~~~~~l~~L~~l~~~~~~~~~~  234 (482)
                      ++...                + .....    ....+++.+...+..       .+..++..+..++..++......   
T Consensus       286 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~---  362 (876)
T d1qgra_         286 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---
T ss_pred             HHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh---
Confidence            54310                1 11111    123445555555432       12346777777777766432211   


Q ss_pred             HHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCH
Q 043116          235 VIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNR  314 (482)
Q Consensus       235 ~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~  314 (482)
                      +. ..+++.+...+.++++..+..++..++.++.........-.-..+++.+...+.++ ++.+|..++|+++.++...+
T Consensus       363 ~~-~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~  440 (876)
T d1qgra_         363 IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLP  440 (876)
T ss_dssp             GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCG
T ss_pred             hh-hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcc
Confidence            11 12345666677888999999999999998875433222222335788899999988 99999999999999986322


Q ss_pred             HHHHHHHHcCCh----HHHHHHHhcCChhHHHHHHHHHHHhhc
Q 043116          315 EQIQAVIDAGLI----GPIVNLLQDAEFGTKKEAAWVISNATS  353 (482)
Q Consensus       315 ~~~~~l~~~~~i----~~L~~ll~~~~~~~~~~a~~aL~~l~~  353 (482)
                      ..   ......+    +.+...+ ..++.++..+++++.++..
T Consensus       441 ~~---~~~~~~~~~~~~~l~~~l-~~~~~v~~~~~~~l~~l~~  479 (876)
T d1qgra_         441 EA---AINDVYLAPLLQCLIEGL-SAEPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             GG---TSSTTTHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHH
T ss_pred             hh---hhhHHHhhhHHHHHHHHh-cCCHHHHHHHHHHHHHHHH
Confidence            21   1112233    3344333 3568889999999988864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.45  E-value=5.2e-08  Score=72.46  Aligned_cols=109  Identities=18%  Similarity=0.230  Sum_probs=88.6

Q ss_pred             hCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChH
Q 043116          248 LGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAVIDAGLIG  327 (482)
Q Consensus       248 l~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~  327 (482)
                      |+++++.+|..|+++|+.+..            ..++.|+..+.++ ++.+|..|+++|+++..  +.         .++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~--~~---------~~~   56 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNE-DWRIRGAAAWIIGNFQD--ER---------AVE   56 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS--HH---------HHH
T ss_pred             CCCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCC-CHHHHHHHHHHHHhcch--hh---------hHH
Confidence            467788899999888876531            2467788999988 99999999999987742  22         567


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHHH
Q 043116          328 PIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGLE  392 (482)
Q Consensus       328 ~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L~  392 (482)
                      .|..++.++++.++..|+++|+.+.   ++.         .++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l~d~~~~VR~~a~~aL~~i~---~~~---------~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLLEDDSGFVRSGAARSLEQIG---GER---------VRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHHCCTHHHHHHHHHHHHHC---SHH---------HHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhhccchhHHHHHHHHHHHHhC---ccc---------hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8889999999999999999999874   332         4777888999999999999998875

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.30  E-value=1.5e-07  Score=69.83  Aligned_cols=109  Identities=18%  Similarity=0.235  Sum_probs=88.7

Q ss_pred             hcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCChH
Q 043116           79 LMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGALI  158 (482)
Q Consensus        79 l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~  158 (482)
                      |++++ +.+|..|+++|+.+..            ..++.|++.+.++++.+|..|+++|+++..  +         +.++
T Consensus         1 L~D~~-~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~   56 (111)
T d1te4a_           1 MADEN-KWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVE   56 (111)
T ss_dssp             CCSSC-CCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHH
T ss_pred             CCCcC-HHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHH
Confidence            35566 7888888888876532            357889999999999999999999998842  2         1467


Q ss_pred             HHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHH
Q 043116          159 PLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALA  222 (482)
Q Consensus       159 ~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~  222 (482)
                      .+...+ .+.++.++..++++|..+..          ...++.|..+++++++.++..++.+|.
T Consensus        57 ~L~~~l-~d~~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          57 PLIKLL-EDDSGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHH-HHCCTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHHhhh-ccchhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            788888 68889999999999998742          567889999999999999999998874

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=0.0063  Score=51.63  Aligned_cols=200  Identities=13%  Similarity=0.109  Sum_probs=151.8

Q ss_pred             HHHhCChHHHHHHHcchhhhhHHHHHHHHHHHhhcCCCCCChhhh------hhHHHHHHHHhccCChhHHHHHHHHHHHh
Q 043116          151 VLSQGALIPLLAELNEHAKLSMLRTATWTLSNFCRGKPQPPFNQI------RPALRVLAQLIRSNDEKVLTDACRALAYL  224 (482)
Q Consensus       151 ~~~~~~i~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~------~~~~~~L~~ll~~~~~~~~~~~l~~L~~l  224 (482)
                      +...+.+..++..| ..-+-+.+..++.++.++.+..........      ..++..|+....  ++++...+-..|+..
T Consensus        65 ~~~~d~l~~Li~~L-~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREc  141 (330)
T d1upka_          65 LYNSGLLSTLVADL-QLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLREC  141 (330)
T ss_dssp             HHHHSHHHHHHHTG-GGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhC-CCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHH
Confidence            44556777777777 667788899999999999998744333221      345555555443  566666676777776


Q ss_pred             ccCCcHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcC---chHHHHHHhcCCCchhHHHH
Q 043116          225 ADGTNDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCG---ALRYLLGLLIHNHNKSIKKE  301 (482)
Q Consensus       225 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~---~i~~L~~ll~~~~~~~v~~~  301 (482)
                      ..+ +.....+.....+..+...+..++-++...|..++..+...++......+..+   ++..+.++|.++ +.-+|..
T Consensus       142 ik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRq  219 (330)
T d1upka_         142 IRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQ  219 (330)
T ss_dssp             HTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHH
T ss_pred             Hhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHH
Confidence            654 44667788888889999999999999999999999999987777666666554   567778899888 9999999


Q ss_pred             HHHHHHHHhc--CCHHHHHHHH-HcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCC
Q 043116          302 VCWIISNITA--GNREQIQAVI-DAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGG  355 (482)
Q Consensus       302 a~~~L~nl~~--~~~~~~~~l~-~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~  355 (482)
                      +...|+.+..  .+...+...+ +..-+..++.+|++.+..++..|..++.-++.+.
T Consensus       220 SlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         220 SLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            9999999986  3344343344 4556889999999999999999999999888754

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0026  Score=54.01  Aligned_cols=208  Identities=11%  Similarity=0.055  Sum_probs=154.0

Q ss_pred             HHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCCh----hhHHHHHhc-CchHHHHHHhcCCCchhHHHHHHHHHHH
Q 043116          234 AVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGDD----FQTQCIINC-GALRYLLGLLIHNHNKSIKKEVCWIISN  308 (482)
Q Consensus       234 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~----~~~~~l~~~-~~i~~L~~ll~~~~~~~v~~~a~~~L~n  308 (482)
                      .++..+.+..++..|..-+-+.|..+..+.+++.+...    .....+... .++..|+....   ++++.-.+...|..
T Consensus        64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLRE  140 (330)
T d1upka_          64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRE  140 (330)
T ss_dssp             HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHH
T ss_pred             HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHHH
Confidence            46667888999999988889999999999999987532    334555533 34444444443   55666666677777


Q ss_pred             HhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHc---CChHHHHhcCCCCCHHHHH
Q 043116          309 ITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVRE---GCVKPLCDLLPCPDPQIVT  385 (482)
Q Consensus       309 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~---~~l~~L~~ll~~~~~~v~~  385 (482)
                      ++.+ ....+.++....+..+.++++.++.++...|..++..+... .+.....++..   .++..+..++.+++.-++.
T Consensus       141 cik~-e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~-hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrR  218 (330)
T d1upka_         141 CIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTR-HKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKR  218 (330)
T ss_dssp             HHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHS-SHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHH
T ss_pred             HHhh-HHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHh-CHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHH
Confidence            7654 56677888888899999999999999999999999999875 45544444444   3567778899999999999


Q ss_pred             HHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCC
Q 043116          386 VCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVG  455 (482)
Q Consensus       386 ~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~  455 (482)
                      .+++.|+.++-...+..         .....+.+..-+..+-.++.+++..++-.|-.+..-+......+
T Consensus       219 qSlKLLgelLldr~N~~---------vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp  279 (330)
T d1upka_         219 QSLKLLGELLLDRHNFT---------IMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKT  279 (330)
T ss_dssp             HHHHHHHHHHHSGGGHH---------HHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHhhhhHHH---------HHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCC
Confidence            99999999997655532         12334444456788888899999999999998888666555443

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=0.021  Score=58.10  Aligned_cols=419  Identities=10%  Similarity=0.078  Sum_probs=210.3

Q ss_pred             hhhhhcccchhchhhhhhhccHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCC---C------CCcHHHHHhcCCHHHHH
Q 043116            8 SQQFQISAPALSLNLQSKFEILPTMVAGVWSD--DNKVQLEATTLFRKMLSFD---R------NSPIEKVIQSGVVPRFV   76 (482)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~i~~l~~~l~s~--~~~~~~~a~~~L~~l~~~~---~------~~~~~~~~~~g~~~~L~   76 (482)
                      +...++.++.+.+ +....+-+..|++.+.+.  +..+|..|+-.|.|.....   .      ++..+..+..    .++
T Consensus        17 ~~~~k~Ae~~L~~-~~~~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~----~ll   91 (959)
T d1wa5c_          17 ASTAKTSERNLRQ-LETQDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKK----EIV   91 (959)
T ss_dssp             GGGHHHHHHHHHH-HHTSTTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHH----HHH
T ss_pred             hHHHHHHHHHHHH-HHcCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHH----HHH
Confidence            4444454555544 455677888888888644  4678889999998887641   0      1112333333    345


Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCC-ChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC------hhhHH
Q 043116           77 EFLMREDYPQLQFEAARALTNIASG-TSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS------SRCRD  149 (482)
Q Consensus        77 ~ll~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~------~~~~~  149 (482)
                      ..+.+++ ..++.+.+.+++.++.. .|+.     ..+.++.+...++++++..+..++.++..++...      .....
T Consensus        92 ~~l~~~~-~~ir~~l~~~i~~I~~~d~p~~-----Wp~ll~~l~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~  165 (959)
T d1wa5c_          92 PLMISLP-NNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFL  165 (959)
T ss_dssp             HHHHHSC-HHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHH
T ss_pred             HHHhCCc-HHHHHHHHHHHHHHHHHhCccc-----cHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHh
Confidence            5555566 78999999999999862 1211     2367899999999988888889999999988421      11111


Q ss_pred             HH--HHhCChHHHHHHHcc-------hhhh--------hHHHHHHHHHHHhhcCCCCC-ChhhhhhHHHHHHHHhccCC-
Q 043116          150 FV--LSQGALIPLLAELNE-------HAKL--------SMLRTATWTLSNFCRGKPQP-PFNQIRPALRVLAQLIRSND-  210 (482)
Q Consensus       150 ~~--~~~~~i~~l~~~l~~-------~~~~--------~~~~~a~~~L~~L~~~~~~~-~~~~~~~~~~~L~~ll~~~~-  210 (482)
                      .+  .-....+.+..++..       ....        .....+..++..+....... -........+.+..++.... 
T Consensus       166 ~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  245 (959)
T d1wa5c_         166 EIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNP  245 (959)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccc
Confidence            10  011123333333311       1100        11222333444444332110 01112333444444444221 


Q ss_pred             --------------hhHHHHHHHHHHHhccCCcHHHHHHHHhCcHHHHHHhh-----CCCChhhHHHHHHHHhHhhcCCh
Q 043116          211 --------------EKVLTDACRALAYLADGTNDKIQAVIEAGVCPRLVKLL-----GHRSRLVLTAALRTIGNIVTGDD  271 (482)
Q Consensus       211 --------------~~~~~~~l~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-----~~~~~~v~~~a~~~L~~l~~~~~  271 (482)
                                    ..++...+..+..+....++....... .++..+..++     ......+...++..+..++....
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~  324 (959)
T d1wa5c_         246 LLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMIN-EFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPK  324 (959)
T ss_dssp             CCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHH-HHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHH
T ss_pred             cccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHH
Confidence                          134455556666555444433322222 2333333333     12345567777777777765322


Q ss_pred             hhHH----HHHhcCchH-HHHHHhc----------------------CCCchhHHHHHHHHHHHHhcCCHHHHHHHHHcC
Q 043116          272 FQTQ----CIINCGALR-YLLGLLI----------------------HNHNKSIKKEVCWIISNITAGNREQIQAVIDAG  324 (482)
Q Consensus       272 ~~~~----~l~~~~~i~-~L~~ll~----------------------~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~  324 (482)
                      ....    ..+. .++. .+...+.                      .......|..+...+..++...++.....+..-
T Consensus       325 ~~~~~~~~~~l~-~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~~~~~~~  403 (959)
T d1wa5c_         325 YFEIFNNESAMN-NITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTNIFLAH  403 (959)
T ss_dssp             HHGGGCSHHHHH-HHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHhhhhHHH-HHHHHHHHHHhcCCHHHHHHHhcchHHHHHHHhhhcccccHHHHHHHHHHHHHHhccccchHHHHHH
Confidence            1100    0000 1111 1112221                      111223456666677777654444322221111


Q ss_pred             ChHHHHHHHh--cCChhHHHHHHHHHHHhhcCCCHH-----------HHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHH
Q 043116          325 LIGPIVNLLQ--DAEFGTKKEAAWVISNATSGGTHE-----------QIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL  391 (482)
Q Consensus       325 ~i~~L~~ll~--~~~~~~~~~a~~aL~~l~~~~~~~-----------~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L  391 (482)
                      +...+-....  +.+...+..++.+++.+...+...           ....+... .+...+.....+.+-++..+++.+
T Consensus       404 i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~-~v~~~l~~~~~~~~~lr~~~~~~i  482 (959)
T d1wa5c_         404 MKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTK-EIAPDLTSNNIPHIILRVDAIKYI  482 (959)
T ss_dssp             HHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHH-HTHHHHHCSSCSCHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHH-HHHHHHccCCCchHHHHHHHHHHH
Confidence            1111111111  345677788888888876432100           01111111 122222333445667888888888


Q ss_pred             HHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCCC
Q 043116          392 ENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHEMSVKILETYWCGRVVGP  456 (482)
Q Consensus       392 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~  456 (482)
                      ..+......           ...     ...+..+.+.+.+++..|+..|...+.++........
T Consensus       483 ~~~~~~~~~-----------~~~-----~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~  531 (959)
T d1wa5c_         483 YTFRNQLTK-----------AQL-----IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNT  531 (959)
T ss_dssp             HHTGGGSCH-----------HHH-----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSS
T ss_pred             HHHHhhccH-----------HHH-----HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccc
Confidence            777543111           111     2346777788888999999999999999987665543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.31  E-value=0.046  Score=47.80  Aligned_cols=174  Identities=15%  Similarity=0.153  Sum_probs=112.7

Q ss_pred             hHHHHHHHcch---hhhhHHHHHHHHHHHhhc----CCCCCChhhhhhHHHHHHHHhccCChhHHHHHHHHHHHhccCCc
Q 043116          157 LIPLLAELNEH---AKLSMLRTATWTLSNFCR----GKPQPPFNQIRPALRVLAQLIRSNDEKVLTDACRALAYLADGTN  229 (482)
Q Consensus       157 i~~l~~~l~~~---~~~~~~~~a~~~L~~L~~----~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~l~~L~~l~~~~~  229 (482)
                      +..+..++...   .++.+...+..+++++..    ..+.........+...+.+.....+.+-...++.+|+|+..  +
T Consensus       125 l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--p  202 (336)
T d1lsha1         125 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--P  202 (336)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--G
T ss_pred             HHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--H
Confidence            34455555322   345566666666665554    33444444556666667777777888888889999999873  2


Q ss_pred             HHHHHHHHhCcHHHHHHhhCC-------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhc-CCCchhHHHH
Q 043116          230 DKIQAVIEAGVCPRLVKLLGH-------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLI-HNHNKSIKKE  301 (482)
Q Consensus       230 ~~~~~~~~~~~l~~L~~ll~~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~v~~~  301 (482)
                               +.++.+.+++..       ....+|..|+++|.+++...+...+        +.+..++. ..+++++|..
T Consensus       203 ---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~EvRia  265 (336)
T d1lsha1         203 ---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSELRIR  265 (336)
T ss_dssp             ---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChHHHHH
Confidence                     235777777743       2457999999999999886665433        23444443 3447889988


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh-cCChhHHHHHHHHHHHhhcCCCHHH
Q 043116          302 VCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ-DAEFGTKKEAAWVISNATSGGTHEQ  359 (482)
Q Consensus       302 a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~-~~~~~~~~~a~~aL~~l~~~~~~~~  359 (482)
                      |...|... ..+..         .+..+...+. +++.+|...+...|.+++....|..
T Consensus       266 A~~~lm~t-~P~~~---------~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         266 SCIVFFES-KPSVA---------LVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             HHHHHHHT-CCCHH---------HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             HHHHHHhc-CCCHH---------HHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcch
Confidence            88887654 23333         3334444454 5788899999999999988666544

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.41  E-value=0.055  Score=54.84  Aligned_cols=178  Identities=10%  Similarity=0.113  Sum_probs=104.2

Q ss_pred             hHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChh------------hHHHHH
Q 043116           85 PQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSR------------CRDFVL  152 (482)
Q Consensus        85 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~------------~~~~~~  152 (482)
                      +.++..++++++..+.....  ..+  ..+++.++.++.+++..++..|++++..++.....            ....+.
T Consensus       472 ~~lr~~~~~~i~~~~~~~~~--~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p~l~  547 (959)
T d1wa5c_         472 IILRVDAIKYIYTFRNQLTK--AQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTE  547 (959)
T ss_dssp             HHHHHHHHHHHHHTGGGSCH--HHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHH
T ss_pred             HHHHHHHHHHHHHHHhhccH--HHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHhhHH
Confidence            67899999999998763221  222  24688999999999999999999999999843211            000010


Q ss_pred             HhCChHHHHHHHcchhh----hhHHHHHHHHHHHhhcCCCCCChhhhhhHHHHHHHHhc----c-CChhHHHHHHHHHHH
Q 043116          153 SQGALIPLLAELNEHAK----LSMLRTATWTLSNFCRGKPQPPFNQIRPALRVLAQLIR----S-NDEKVLTDACRALAY  223 (482)
Q Consensus       153 ~~~~i~~l~~~l~~~~~----~~~~~~a~~~L~~L~~~~~~~~~~~~~~~~~~L~~ll~----~-~~~~~~~~~l~~L~~  223 (482)
                        ..+..++..+.....    ......++.++..+..............+++.+...+.    + .++.....+..++..
T Consensus       548 --~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l~~  625 (959)
T d1wa5c_         548 --ILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGA  625 (959)
T ss_dssp             --HHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence              123344444422211    11123355566555544333333444556666665543    2 246677777777777


Q ss_pred             hccCC-cHHHHHHHHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcC
Q 043116          224 LADGT-NDKIQAVIEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTG  269 (482)
Q Consensus       224 l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~  269 (482)
                      +.... ++... .....+++.+...+..........++..+..+...
T Consensus       626 l~~~~~~~~~~-~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~  671 (959)
T d1wa5c_         626 ILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ  671 (959)
T ss_dssp             HHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred             HHHhcCchhHH-HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHh
Confidence            76432 22222 23345677777777776666777777777666543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.32  E-value=0.0035  Score=51.77  Aligned_cols=114  Identities=11%  Similarity=0.146  Sum_probs=60.9

Q ss_pred             HHHHHHhhCCCChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHHHHHhcCCHHHHHHH
Q 043116          241 CPRLVKLLGHRSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWIISNITAGNREQIQAV  320 (482)
Q Consensus       241 l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L~nl~~~~~~~~~~l  320 (482)
                      +..|..+++++++.||..++..|.                  .+.+..++.++ +..||..++..+.             
T Consensus        68 ~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l~-------------  115 (233)
T d1lrva_          68 VEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRLP-------------  115 (233)
T ss_dssp             GGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHSC-------------
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhccC-------------
Confidence            456777888888888888875432                  12344455555 6666665554321             


Q ss_pred             HHcCChHHHHHHHhcCChhHHHHHHHH-----HHHhhcCCCHHHHHHHHHcCChHHHHhcCCCCCHHHHHHHHHHH
Q 043116          321 IDAGLIGPIVNLLQDAEFGTKKEAAWV-----ISNATSGGTHEQIKHLVREGCVKPLCDLLPCPDPQIVTVCLIGL  391 (482)
Q Consensus       321 ~~~~~i~~L~~ll~~~~~~~~~~a~~a-----L~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~~l~~L  391 (482)
                           .+.|..++.++++.++..++..     |..++...++.....+...-..+.|..+++++++.|+..+...+
T Consensus       116 -----~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~L  186 (233)
T d1lrva_         116 -----LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRL  186 (233)
T ss_dssp             -----TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHC
T ss_pred             -----HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHhc
Confidence                 1122333344444444444332     22222222333333333333456777888888888887776543

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.20  E-value=0.0025  Score=52.76  Aligned_cols=42  Identities=19%  Similarity=0.227  Sum_probs=27.5

Q ss_pred             HhhcCCCChHHHHHHHHHHHHHhCCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHH
Q 043116           77 EFLMREDYPQLQFEAARALTNIASGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWAL  137 (482)
Q Consensus        77 ~ll~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L  137 (482)
                      .+|.++. .+++..|++                  .-.+..|..+++++++.+|..++..|
T Consensus        49 ~~l~~p~-~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~~L   90 (233)
T d1lrva_          49 QYLADPF-WERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAYRL   90 (233)
T ss_dssp             GGTTCSS-HHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHTTS
T ss_pred             HHhcCCc-HHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHHHc
Confidence            4566666 677765543                  12356677788888888888776543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.50  E-value=0.34  Score=41.96  Aligned_cols=165  Identities=13%  Similarity=0.136  Sum_probs=102.1

Q ss_pred             hHHHHHHHHhcc----CChhHHHHHHHHHHHhccC----CcHHHHHHHHhCcHHH----HHHhhCCCChhhHHHHHHHHh
Q 043116          197 PALRVLAQLIRS----NDEKVLTDACRALAYLADG----TNDKIQAVIEAGVCPR----LVKLLGHRSRLVLTAALRTIG  264 (482)
Q Consensus       197 ~~~~~L~~ll~~----~~~~~~~~~l~~L~~l~~~----~~~~~~~~~~~~~l~~----L~~ll~~~~~~v~~~a~~~L~  264 (482)
                      ..+..+..++.+    .++.++..+..+++++...    .+..     ...+++.    +.......+.+-+..++++||
T Consensus       123 ~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~-----~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLG  197 (336)
T d1lsha1         123 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSC-----PDELLQPLHDLLSQSSDRAKEEEIVLALKALG  197 (336)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSC-----CGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCC-----cHHHHHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence            345555566653    4678888888888877721    1111     0122333    333445566667777899999


Q ss_pred             HhhcCChhhHHHHHhcCchHHHHHHhcCC------CchhHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHh--cC
Q 043116          265 NIVTGDDFQTQCIINCGALRYLLGLLIHN------HNKSIKKEVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQ--DA  336 (482)
Q Consensus       265 ~l~~~~~~~~~~l~~~~~i~~L~~ll~~~------~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~--~~  336 (482)
                      |+..  +.         .++.+..++...      .+..+|..|.|++.++....+...+        +.++.++.  ..
T Consensus       198 N~g~--p~---------~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e  258 (336)
T d1lsha1         198 NAGQ--PN---------SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAI  258 (336)
T ss_dssp             HHTC--GG---------GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTS
T ss_pred             ccCC--Hh---------HHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCC
Confidence            9863  33         345566666432      2567999999999999876665433        33444554  46


Q ss_pred             ChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Q 043116          337 EFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLL-PCPDPQIVTVCLIGLENILK  396 (482)
Q Consensus       337 ~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll-~~~~~~v~~~~l~~L~~l~~  396 (482)
                      ++++|..|..+|...-  -+...         +..+...+ .+++.+|...+...|.++.+
T Consensus       259 ~~EvRiaA~~~lm~t~--P~~~~---------l~~i~~~l~~E~~~QV~sfv~S~l~~la~  308 (336)
T d1lsha1         259 KSELRIRSCIVFFESK--PSVAL---------VSMVAVRLRREPNLQVASFVYSQMRSLSR  308 (336)
T ss_dssp             CHHHHHHHHHHHHHTC--CCHHH---------HHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHhcC--CCHHH---------HHHHHHHHHhCcHHHHHHHHHHHHHHHHh
Confidence            7899988888876531  13322         34444444 45777888888777777765

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.88  E-value=0.69  Score=40.09  Aligned_cols=157  Identities=12%  Similarity=0.091  Sum_probs=93.2

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhc----C-----C-CChHHHHHHHHHHHHHh
Q 043116           31 TMVAGVWSDD-NKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLM----R-----E-DYPQLQFEAARALTNIA   99 (482)
Q Consensus        31 ~l~~~l~s~~-~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~----~-----~-~~~~v~~~a~~~L~~l~   99 (482)
                      ..+..+++.- .......+..|.--+...+..-++.+ ..+++..|+.+|.    .     + .+...+..+++||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            3455555432 23333444444433444322224444 3445666666653    1     1 11457888999999998


Q ss_pred             CCChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCC--hhhHHHHH----------HhCChHHHHHHHcch
Q 043116          100 SGTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDS--SRCRDFVL----------SQGALIPLLAELNEH  167 (482)
Q Consensus       100 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~----------~~~~i~~l~~~l~~~  167 (482)
                      .........+-..+++..+...+.++++.++..|+..|..+|...  +.....+.          +.+-..+++..+...
T Consensus        85 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~  164 (343)
T d2bnxa1          85 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG  164 (343)
T ss_dssp             SSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT
T ss_pred             ccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc
Confidence            844334444556678899999999999999999999999998432  22222222          224456666666555


Q ss_pred             hhhhHHHHHHHHHHHhhcCCC
Q 043116          168 AKLSMLRTATWTLSNFCRGKP  188 (482)
Q Consensus       168 ~~~~~~~~a~~~L~~L~~~~~  188 (482)
                      .+.+....++..+..+....+
T Consensus       165 ~~~ey~~a~m~lIN~li~~~~  185 (343)
T d2bnxa1         165 TSIALKVGCLQLINALITPAE  185 (343)
T ss_dssp             SCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccHHHHHHHHHHHHHHHcCcc
Confidence            555666666666666665544

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.81  E-value=1.1  Score=38.75  Aligned_cols=174  Identities=10%  Similarity=0.070  Sum_probs=107.7

Q ss_pred             cCCcHHHHHHHHhCcHHHHHHhhC----C-------CChhhHHHHHHHHhHhhcCChhhHHHHHhcCchHHHHHHhcCCC
Q 043116          226 DGTNDKIQAVIEAGVCPRLVKLLG----H-------RSRLVLTAALRTIGNIVTGDDFQTQCIINCGALRYLLGLLIHNH  294 (482)
Q Consensus       226 ~~~~~~~~~~~~~~~l~~L~~ll~----~-------~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~  294 (482)
                      ..+....+.+ ..+++..|+.+|.    .       .+......++.||..+..........+-..+.+..+...+.++ 
T Consensus        33 t~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~-  110 (343)
T d2bnxa1          33 NNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPA-  110 (343)
T ss_dssp             HSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTT-
T ss_pred             cCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCC-
Confidence            3444555555 3344555555542    1       1245777899999999886555555556678999999999988 


Q ss_pred             chhHHHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHH
Q 043116          295 NKSIKKEVCWIISNITAGN-REQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLC  373 (482)
Q Consensus       295 ~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~  373 (482)
                      .+.++..|...|..+|... ++        ++.               ..++.|+.+...         .-+.+-+..++
T Consensus       111 ~~~tr~~a~elL~~lc~~~~~~--------~g~---------------~~vL~Al~~~~~---------~~e~~RF~~lv  158 (343)
T d2bnxa1         111 VPNMMIDAAKLLSALCILPQPE--------DMN---------------ERVLEAMTERAE---------MDEVERFQPLL  158 (343)
T ss_dssp             SHHHHHHHHHHHHHHHTCCSST--------THH---------------HHHHHHHHHHHH---------HHTSCTTHHHH
T ss_pred             chHHHHHHHHHHHHHHhccCCC--------chH---------------HHHHHHHHHHHH---------hcCCCcHHHHH
Confidence            9999999999999988521 11        011               111222221111         12233455565


Q ss_pred             hcCCC-CCHHHHHHHHHHHHHHHHhchhccccCCCCcccHHHHHHHHhchHHHHHHhhcCCCHHHHH
Q 043116          374 DLLPC-PDPQIVTVCLIGLENILKVGEAEKNTDNIGDVNQYAQLVEEAEGLEKIENLQSHDNNDIHE  439 (482)
Q Consensus       374 ~ll~~-~~~~v~~~~l~~L~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~v~~  439 (482)
                      +.++. .+.+.+..++..+..++...+...      ..-.++..|...|..+.+..+....++++..
T Consensus       159 ~~l~~~~~~ey~~a~m~lIN~li~~~~dl~------~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~  219 (343)
T d2bnxa1         159 DGLKSGTSIALKVGCLQLINALITPAEELD------FRVHIRSELMRLGLHQVLQELREIENEDMKV  219 (343)
T ss_dssp             HHTSTTSCHHHHHHHHHHHHHHHTTCSCHH------HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred             HHHhccccHHHHHHHHHHHHHHHcCcccHH------HHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence            55554 456777778877777776544422      1233566677888888888887777776643

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.14  E-value=0.29  Score=36.38  Aligned_cols=93  Identities=8%  Similarity=-0.107  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC--
Q 043116          301 EVCWIISNITAGNREQIQAVIDAGLIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC--  378 (482)
Q Consensus       301 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~--  378 (482)
                      .+.--++.+...++...+.     .+..+..-+.++++.++..|+..|-.++.++.+.+...+.+.++++.|..++..  
T Consensus        27 ~~ileicD~I~~~~~~~k~-----a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~  101 (145)
T d1ujka_          27 ASINGFCEQLNEDFEGPPL-----ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKY  101 (145)
T ss_dssp             HHHHHHHHHHTSSTTHHHH-----HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhcc
Confidence            4444555555433332222     344566667889999999999999999999888888888888899999888863  


Q ss_pred             ----CCHHHHHHHHHHHHHHHHhc
Q 043116          379 ----PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       379 ----~~~~v~~~~l~~L~~l~~~~  398 (482)
                          .+..|+.+++..+.......
T Consensus       102 ~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_         102 LGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             TGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHC
Confidence                45689999999988876543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.61  Score=34.48  Aligned_cols=74  Identities=8%  Similarity=-0.109  Sum_probs=60.7

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..+..-+.++++.++..|+..|-.++.++.+.+...+....+++.|..++..      .++.|+.+++..+.......
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            444566667889999999999999999999888888888888899999998863      46789999999888876543

>d2jaka1 a.118.1.20 (A:30-372) Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: B56-like
domain: Serine/threonine-protein phosphatase 2A regulatory subunit B56-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.41  E-value=5.6  Score=33.83  Aligned_cols=217  Identities=13%  Similarity=0.060  Sum_probs=113.5

Q ss_pred             CCCChHHHHHHHHHHHHHhC---CChHhHHHHHhCCChHHHHHhhCCCCHHHHHHHHHHHHHhhCCChhhHHHHHHhCCh
Q 043116           81 REDYPQLQFEAARALTNIAS---GTSENTKVAIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSSRCRDFVLSQGAL  157 (482)
Q Consensus        81 ~~~~~~v~~~a~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i  157 (482)
                      .+.||+++. +-..+..+..   -++...+..++...+..|+.++.++|++-|.....+|..+.+.-...|..+... +.
T Consensus        99 e~sWpHL~l-VY~ill~f~~s~~~~~~~~~~~id~~Fi~~Ll~lf~S~D~rER~~lk~~l~~iy~kf~~~R~~Ir~~-i~  176 (343)
T d2jaka1          99 EAAWPHLQL-VYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQ-IN  176 (343)
T ss_dssp             CTTHHHHHH-HHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HH
T ss_pred             CCCCchHHH-HHHHHHHHHhccccCchhHHhhCCHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhhhhHHHHHHHH-HH
Confidence            344565554 3334444433   123333344445567888999999999999999999999876666666655442 34


Q ss_pred             HHHHHHHcchhhhhHHHHHHHHHHHhhcCCCC-CChhhhhhHHHHHHHHhccCC-hhHHHHHHHHHHHhccCCcHHHHHH
Q 043116          158 IPLLAELNEHAKLSMLRTATWTLSNFCRGKPQ-PPFNQIRPALRVLAQLIRSND-EKVLTDACRALAYLADGTNDKIQAV  235 (482)
Q Consensus       158 ~~l~~~l~~~~~~~~~~~a~~~L~~L~~~~~~-~~~~~~~~~~~~L~~ll~~~~-~~~~~~~l~~L~~l~~~~~~~~~~~  235 (482)
                      ..+.+.+..+....-...++.++..+..+-.. .......-....++.+.+... ...-.....++......++.....+
T Consensus       177 ~if~~fi~e~~~~~gI~elLeil~sii~gf~~plkeeh~~f~~~vllPLhk~~~~~~y~~qL~~~v~~f~~kDp~l~~~~  256 (343)
T d2jaka1         177 NIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPV  256 (343)
T ss_dssp             HHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGGGTHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHHhhcCCCCccHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcCchhHHHH
Confidence            45555564444445566677777777776422 233333444555555555443 2334444455555554444333221


Q ss_pred             HHhCcHHHHHHhhCCCChhhHHHHHHHHhHhhcCC-hhhHHHHHhcCchHHHHHHhcCCCchhHHHHHHHHH
Q 043116          236 IEAGVCPRLVKLLGHRSRLVLTAALRTIGNIVTGD-DFQTQCIINCGALRYLLGLLIHNHNKSIKKEVCWII  306 (482)
Q Consensus       236 ~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~~v~~~a~~~L  306 (482)
                           +..+++.==..++.-...-+.-|..+.... +.....+. .-+...+.+.+.++ +..|.+.|....
T Consensus       257 -----i~~llk~WP~t~~~Kev~FL~el~~il~~~~~~~f~~~~-~~lf~~la~ci~S~-h~qVAErAl~~w  321 (343)
T d2jaka1         257 -----VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIM-EPLFRQLAKCVSSP-HFQVAERALYYW  321 (343)
T ss_dssp             -----HHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHHHGGG
T ss_pred             -----HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHH-HHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence                 122222211122222222333444444322 22222221 23556666777777 777777665443

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.76  E-value=0.42  Score=35.48  Aligned_cols=74  Identities=8%  Similarity=0.044  Sum_probs=59.7

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC------CCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR------EDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~------~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..+.+.+++.++..+..|+..|-.+....+.....++.+.+++..|+++++.      .+ ..++..++..+...+.
T Consensus        45 ~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~-~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          45 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTS-EKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCc-HHHHHHHHHHHHHHHH
Confidence            4677888888999999999999999988887655556777788899999999863      34 6899988888877665


Q ss_pred             C
Q 043116          101 G  101 (482)
Q Consensus       101 ~  101 (482)
                      .
T Consensus       124 ~  124 (145)
T d1ujka_         124 G  124 (145)
T ss_dssp             H
T ss_pred             H
Confidence            3

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.99  E-value=0.7  Score=34.24  Aligned_cols=74  Identities=7%  Similarity=0.012  Sum_probs=58.1

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC-CCHHHHHHHHHHHHHHHHhc
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC-PDPQIVTVCLIGLENILKVG  398 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~~l~~L~~l~~~~  398 (482)
                      .+..|..-+.++++.++..|+..|-.++.++.+.....+.+.+.++.|..+++. .+..|+.+++..+.......
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            455566667889999999999999999998777777776677778888777754 45678999998888877643

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.28  E-value=1.4  Score=32.71  Aligned_cols=73  Identities=8%  Similarity=-0.017  Sum_probs=58.0

Q ss_pred             ChHHHHHHHhcCChhHHHHHHHHHHHhhcCCCHHHHHHHHHcCChHHHHhcCCC------CCHHHHHHHHHHHHHHHHh
Q 043116          325 LIGPIVNLLQDAEFGTKKEAAWVISNATSGGTHEQIKHLVREGCVKPLCDLLPC------PDPQIVTVCLIGLENILKV  397 (482)
Q Consensus       325 ~i~~L~~ll~~~~~~~~~~a~~aL~~l~~~~~~~~~~~l~~~~~l~~L~~ll~~------~~~~v~~~~l~~L~~l~~~  397 (482)
                      ++..+..-+.++++.++..|+..|-.++.++.+.+...+....+++.|..++..      .+..|+.+++..+......
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~  118 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  118 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHH
Confidence            445566667789999999999999999999888887887777888888888753      3567999888888877653

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.65  E-value=0.53  Score=34.96  Aligned_cols=73  Identities=10%  Similarity=0.049  Sum_probs=57.0

Q ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcCCCChHHHHHHHHHHHHHhC
Q 043116           28 ILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMREDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        28 ~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~v~~~a~~~L~~l~~  100 (482)
                      ++..|.+.+++.++.++..|+..|-.+....+......+.+.+++..+..++++.....++..++..+...+.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            6778888889999999999999999888875444455555777888888888665437899988888877654

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.44  E-value=1.1  Score=32.90  Aligned_cols=74  Identities=11%  Similarity=0.005  Sum_probs=58.5

Q ss_pred             ccHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHhcCCHHHHHHhhcC-----CCChHHHHHHHHHHHHHhC
Q 043116           27 EILPTMVAGVWSDDNKVQLEATTLFRKMLSFDRNSPIEKVIQSGVVPRFVEFLMR-----EDYPQLQFEAARALTNIAS  100 (482)
Q Consensus        27 ~~i~~l~~~l~s~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~g~~~~L~~ll~~-----~~~~~v~~~a~~~L~~l~~  100 (482)
                      .++..|.+.+++.++..+..|+..|-.+....+.....++.+..++..|++++..     ...+.++..++..+...+.
T Consensus        38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3677888888999999999999999988887645555666677889999999863     1227899998888877765