Citrus Sinensis ID: 043144

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580
Protein Sequence
RARAIRKVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM
Secondary Structure (PSIPRED)
cHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHcHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
RARAIRKVHVGCKVsfsvqsadsvdfkkhkgfqkqRQNRVFAISKVETLSFNVKMKHGEAFvqghlnnghissgmensslnfedfesnnhLRRLVRNGELEEGFKFLESMvyhgdipdiipctsLIRGFCKVGKTRKATRVMEIVedsgavpdviTYNVLISGYCRLGEIDNALQVLERmsvapdvvTYNTILRTLCDSGKLNLAMEVLHKQLekecypdviTYTILIEATCKESGVGQAMKLLDEMrnkgcipdvvTYNVLVNGICKEGRLDEAIKFlndmpsygcqpnvithNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILekmpkhgctpnslsynpvlhgfckEKKMDRAIEYLEIMVsrgcypdiVTYNTLLTALCKDGKVDVAVEILNQLsnkhcspvlITYNTVIDGLSKVGKTEQAMKLLEEMRtkglkpdtitysslvgglsregKVDEAIKLFHDlerlgvrpnvitYNSIMLGLCKARQTYRAIDILADmvtrsckpteATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM
Flexible Loop (DISEMBL)
rarairkvhvgckvsfsvqsadsvdfkkhkgfqkqrqnrvFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMeivedsgavpdvitYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQlsnkhcspvLITYNTVIDGLSKVGKTEQAMKLLEemrtkglkpdtiTYSSLVGGLSREGKVDEAIKLfhdlerlgvrpnvITYNSIMLGLCKARQTYRAIDILAdmvtrsckpTEATYTILIEGIAYEGLAKEALDLLNQLCSrgvvkkssaeqvavkm
Low Complexity Region (SEG)
RARAIRKVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM
Disordered region (IsUnstruct)
******KVHVGCKVSFSVQS***VDF*********RQNRVFAISKVETLSFNVKMKHGEAFVQGHLNN*********************HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLE****KGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV************
Disordered Region (DISOPRED)
*A***********VSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM
Disordered Region (DISEMBL)
RARAIRKVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV*************
Disordered Region (DISPRO)
RARAIRKVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RARAIRKVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	580	2.2.26 [Sep-21-2011]
Q3EDF8	598	Pentatricopeptide repeat-	yes	no	0.977	0.948	0.753	0.0
Q9SR00	602	Pentatricopeptide repeat-	no	no	0.860	0.828	0.447	1e-129
A3KPF8	576	Pentatricopeptide repeat-	no	no	0.829	0.835	0.379	9e-92
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.829	0.637	0.322	1e-81
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.710	0.551	0.353	7e-80
Q9CAN0	630	Pentatricopeptide repeat-	no	no	0.829	0.763	0.296	1e-79
Q9SXD1	630	Pentatricopeptide repeat-	no	no	0.784	0.722	0.310	3e-79
Q9LQ14	629	Pentatricopeptide repeat-	no	no	0.796	0.734	0.311	4e-79
Q9FRS4	559	Pentatricopeptide repeat-	no	no	0.755	0.783	0.343	5e-78
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.824	0.750	0.320	9e-78

>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900 OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/577 (75%), Positives = 499/577 (86%), Gaps = 10/577 (1%)

Query: 7   KVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHL 66
           K+ V C+ S S+ S   +  +K     + R   V A SKVE+   N + +  E    G+ 
Sbjct: 29  KLDVSCRTSGSISSKIPLGSRK-----RNRLVLVSAASKVESSGLNGRAQKFETLSSGYS 83

Query: 67  N---NGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCT 123
           N   NGH SS   NSS   ED ESNNHLR++VR GELEEGFKFLE+MVYHG++PDIIPCT
Sbjct: 84  NSNGNGHYSS--VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCT 141

Query: 124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA 183
           +LIRGFC++GKTRKA +++EI+E SGAVPDVITYNV+ISGYC+ GEI+NAL VL+RMSV+
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS 201

Query: 184 PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL 243
           PDVVTYNTILR+LCDSGKL  AMEVL + L+++CYPDVITYTILIEATC++SGVG AMKL
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261

Query: 244 LDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS 303
           LDEMR++GC PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS GCQPNVITHNIILRSMCS
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 304 TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLS 363
           TGRWMDAE+LLA+M+ KG SPSVVTFNILINFLCRKGLLGRAIDILEKMP+HGC PNSLS
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381

Query: 364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 423
           YNP+LHGFCKEKKMDRAIEYLE MVSRGCYPDIVTYNT+LTALCKDGKV+ AVEILNQLS
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 424 NKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVD 483
           +K CSPVLITYNTVIDGL+K GKT +A+KLL+EMR K LKPDTITYSSLVGGLSREGKVD
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVD 501

Query: 484 EAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543
           EAIK FH+ ER+G+RPN +T+NSIMLGLCK+RQT RAID L  M+ R CKP E +YTILI
Sbjct: 502 EAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILI 561

Query: 544 EGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
           EG+AYEG+AKEAL+LLN+LC++G++KKSSAEQVA KM
Sbjct: 562 EGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1

 Score =  463 bits (1191), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 225/503 (44%), Positives = 330/503 (65%), Gaps = 4/503 (0%)

Query: 77  NSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTR 136
           + SL F D +      R  R+G   E    LE+MV  G  PD+I CT LI+GF  +    
Sbjct: 82  SQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIP 141

Query: 137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTIL 193
           KA RVMEI+E  G  PDV  YN LI+G+C++  ID+A +VL+RM     +PD VTYN ++
Sbjct: 142 KAVRVMEILEKFGQ-PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI 200

Query: 194 RTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI 253
            +LC  GKL+LA++VL++ L   C P VITYTILIEAT  E GV +A+KL+DEM ++G  
Sbjct: 201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260

Query: 254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERL 313
           PD+ TYN ++ G+CKEG +D A + + ++   GC+P+VI++NI+LR++ + G+W + E+L
Sbjct: 261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320

Query: 314 LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK 373
           + +M  + C P+VVT++ILI  LCR G +  A+++L+ M + G TP++ SY+P++  FC+
Sbjct: 321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query: 374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT 433
           E ++D AIE+LE M+S GC PDIV YNT+L  LCK+GK D A+EI  +L    CSP   +
Sbjct: 381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440

Query: 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493
           YNT+   L   G   +A+ ++ EM + G+ PD ITY+S++  L REG VDEA +L  D+ 
Sbjct: 441 YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMR 500

Query: 494 RLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAK 553
                P+V+TYN ++LG CKA +   AI++L  MV   C+P E TYT+LIEGI + G   
Sbjct: 501 SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRA 560

Query: 554 EALDLLNQLCSRGVVKKSSAEQV 576
           EA++L N L     + + S +++
Sbjct: 561 EAMELANDLVRIDAISEYSFKRL 583

Arabidopsis thaliana (taxid: 3702)

>sp|A3KPF8|PP131_ARATH Pentatricopeptide repeat-containing protein At1g79080, chloroplastic OS=Arabidopsis thaliana GN=At1g79080 PE=2 SV=1

 Score =  338 bits (866), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 185/487 (37%), Positives = 290/487 (59%), Gaps = 6/487 (1%)

Query: 100 LEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV 159
           L + F  LES+V  G  P++   T L+   CK  + +KA RV+E++  SG +PD   Y  
Sbjct: 87  LSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTY 146

Query: 160 LISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216
           L++  C+ G +  A+Q++E+M       + VTYN ++R LC  G LN +++ + + ++K 
Sbjct: 147 LVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKG 206

Query: 217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAI 276
             P+  TY+ L+EA  KE G  +A+KLLDE+  KG  P++V+YNVL+ G CKEGR D+A+
Sbjct: 207 LAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAM 266

Query: 277 KFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL 336
               ++P+ G + NV+++NI+LR +C  GRW +A  LLAEM     +PSVVT+NILIN L
Sbjct: 267 ALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDRAPSVVTYNILINSL 326

Query: 337 CRKGLLGRAIDILEKMPK--HGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP 394
              G   +A+ +L++M K  H     + SYNPV+   CKE K+D  ++ L+ M+ R C P
Sbjct: 327 AFHGRTEQALQVLKEMSKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKP 386

Query: 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLL 454
           +  TYN + +    + KV  A  I+  LSNK        Y +VI  L + G T  A +LL
Sbjct: 387 NEGTYNAIGSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQLL 446

Query: 455 EEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL-GVRPNVITYNSIMLGLCK 513
            EM   G  PD  TYS+L+ GL  EG    A+++   +E     +P V  +N+++LGLCK
Sbjct: 447 YEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLCK 506

Query: 514 ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSA 573
            R+T  A+++   MV +   P E TY IL+EGIA+E   + A ++L++L  R V+ +++ 
Sbjct: 507 IRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAKEVLDELRLRKVIGQNAV 566

Query: 574 EQVAVKM 580
           +++ ++ 
Sbjct: 567 DRIVMQF 573

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  304 bits (779), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 158/490 (32%), Positives = 279/490 (56%), Gaps = 9/490 (1%)

Query: 95  VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATR-VMEIVEDSGAVPD 153
           +  G+L+   +  E MV  G     +    ++ GFCK G+   A   + E+    G  PD
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query: 154 VITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLH 210
             T+N L++G C+ G + +A+++++ M      PDV TYN+++  LC  G++  A+EVL 
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354

Query: 211 KQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG 270
           + + ++C P+ +TY  LI   CKE+ V +A +L   + +KG +PDV T+N L+ G+C   
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query: 271 RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFN 330
               A++   +M S GC+P+  T+N+++ S+CS G+  +A  +L +M L GC+ SV+T+N
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474

Query: 331 ILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390
            LI+  C+      A +I ++M  HG + NS++YN ++ G CK ++++ A + ++ M+  
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534

Query: 391 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQA 450
           G  PD  TYN+LLT  C+ G +  A +I+  +++  C P ++TY T+I GL K G+ E A
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

Query: 451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHD-LERLGVRPNVITYNSIML 509
            KLL  ++ KG+      Y+ ++ GL R+ K  EAI LF + LE+    P+ ++Y  +  
Sbjct: 595 SKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFR 654

Query: 510 GLCKARQTYR-AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568
           GLC      R A+D L +++ +   P  ++  +L EG+    + +  + L+N +  +   
Sbjct: 655 GLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA-- 712

Query: 569 KKSSAEQVAV 578
            + S E+V++
Sbjct: 713 -RFSEEEVSM 721

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  298 bits (764), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 147/416 (35%), Positives = 247/416 (59%), Gaps = 4/416 (0%)

Query: 157 YNVLISGYCRLGEIDNALQVL---ERMSVAPDVVTYNTILRTLCDSGK-LNLAMEVLHKQ 212
           +++++  Y RL  ID AL ++   +     P V++YN +L     S + ++ A  V  + 
Sbjct: 137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query: 213 LEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRL 272
           LE +  P+V TY ILI   C    +  A+ L D+M  KGC+P+VVTYN L++G CK  ++
Sbjct: 197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query: 273 DEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNIL 332
           D+  K L  M   G +PN+I++N+++  +C  GR  +   +L EM  +G S   VT+N L
Sbjct: 257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316

Query: 333 INFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC 392
           I   C++G   +A+ +  +M +HG TP+ ++Y  ++H  CK   M+RA+E+L+ M  RG 
Sbjct: 317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376

Query: 393 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMK 452
            P+  TY TL+    + G ++ A  +L ++++   SP ++TYN +I+G    GK E A+ 
Sbjct: 377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436

Query: 453 LLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512
           +LE+M+ KGL PD ++YS+++ G  R   VDEA+++  ++   G++P+ ITY+S++ G C
Sbjct: 437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query: 513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568
           + R+T  A D+  +M+     P E TYT LI     EG  ++AL L N++  +GV+
Sbjct: 497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN0|PPR99_ARATH Pentatricopeptide repeat-containing protein At1g63130, mitochondrial OS=Arabidopsis thaliana GN=At1g63130 PE=2 SV=1

 Score =  297 bits (761), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 154/519 (29%), Positives = 276/519 (53%), Gaps = 38/519 (7%)

Query: 99  ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYN 158
           +L++       MV     P I+  + L+    K+ K      + E +++ G   ++ TY+
Sbjct: 61  KLDDAVNLFGDMVKSRPFPSIVEFSKLLSAIAKMNKFDLVISLGEQMQNLGISHNLYTYS 120

Query: 159 VLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK 215
           +LI+ +CR  ++  AL VL +M      PD+VT N++L   C   +++ A+ ++ + +E 
Sbjct: 121 ILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEM 180

Query: 216 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLD-- 273
              PD  T+  LI    + +   +A+ L+D M  KGC PD+VTY ++VNG+CK G +D  
Sbjct: 181 GYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLA 240

Query: 274 ---------------------------------EAIKFLNDMPSYGCQPNVITHNIILRS 300
                                            +A+    +M + G +PNV+T+N ++R 
Sbjct: 241 LSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRC 300

Query: 301 MCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPN 360
           +C+ GRW DA RLL++M+ +  +P+VVTF+ LI+   ++G L  A  + ++M K    P+
Sbjct: 301 LCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPD 360

Query: 361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 420
             +Y+ +++GFC   ++D A    E+M+S+ C+P++VTYNTL+   CK  +VD  +E+  
Sbjct: 361 IFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFR 420

Query: 421 QLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG 480
           ++S +      +TY T+I G  +  + + A  + ++M + G+ PD +TYS L+ GL   G
Sbjct: 421 EMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNG 480

Query: 481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYT 540
           KV+ A+ +F  L+R  + P++ TYN ++ G+CKA +     D+   +  +  KP   TYT
Sbjct: 481 KVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYT 540

Query: 541 ILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
            ++ G   +GL +EA  L  ++   G +  S      ++
Sbjct: 541 TMMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2

 Score =  296 bits (758), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 142/458 (31%), Positives = 263/458 (57%), Gaps = 3/458 (0%)

Query: 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA- 183
           LI  FC+  +   A  V+  +   G  P+++T + L++GYC    I  A+ ++++M V  
Sbjct: 122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query: 184 --PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241
             P+ VT+NT++  L    K + AM ++ + + K C PD++TY +++   CK      A 
Sbjct: 182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query: 242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSM 301
            LL++M      P V+ YN +++G+CK   +D+A+    +M + G +PNV+T++ ++  +
Sbjct: 242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301

Query: 302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS 361
           C+ GRW DA RLL++M+ +  +P V TF+ LI+   ++G L  A  + ++M K    P+ 
Sbjct: 302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query: 362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421
           ++Y+ +++GFC   ++D A +  E MVS+ C+PD+VTYNTL+   CK  +V+  +E+  +
Sbjct: 362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421

Query: 422 LSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481
           +S +      +TYN +I GL + G  + A ++ +EM + G+ P+ +TY++L+ GL + GK
Sbjct: 422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481

Query: 482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTI 541
           +++A+ +F  L+R  + P + TYN ++ G+CKA +     D+  ++  +  KP    Y  
Sbjct: 482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541

Query: 542 LIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
           +I G   +G  +EA  L  ++   G +  S      ++
Sbjct: 542 MISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ14|PPR96_ARATH Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana GN=At1g62930 PE=2 SV=2

 Score =  296 bits (757), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 145/465 (31%), Positives = 265/465 (56%), Gaps = 3/465 (0%)

Query: 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVL 177
           D+     LI  FC+  +   A  V+  +   G  PD++T + L++GYC    I  A+ ++
Sbjct: 114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173

Query: 178 ERMSV---APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKE 234
           ++M V    P+ VT+NT++  L    K + A+ ++ + + + C PD+ TY  ++   CK 
Sbjct: 174 DQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 233

Query: 235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITH 294
             +  A+ LL +M       DVV Y  +++ +C    +++A+    +M + G +PNV+T+
Sbjct: 234 GDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTY 293

Query: 295 NIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK 354
           N ++R +C+ GRW DA RLL++M+ +  +P+VVTF+ LI+   ++G L  A  + ++M K
Sbjct: 294 NSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIK 353

Query: 355 HGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDV 414
               P+  +Y+ +++GFC   ++D A    E+M+S+ C+P++VTYNTL+   CK  +V+ 
Sbjct: 354 RSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVEE 413

Query: 415 AVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG 474
            +E+  ++S +      +TYNT+I GL + G  + A K+ ++M + G+ PD ITYS L+ 
Sbjct: 414 GMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLD 473

Query: 475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP 534
           GL + GK+++A+ +F  L++  + P++ TYN ++ G+CKA +     D+   +  +  KP
Sbjct: 474 GLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKP 533

Query: 535 TEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
               YT +I G   +GL +EA  L  ++   G +  S      ++
Sbjct: 534 NVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610 OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1

 Score =  292 bits (748), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 164/477 (34%), Positives = 262/477 (54%), Gaps = 39/477 (8%)

Query: 84  DFESNNH-LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVM 142
           D E+NN  L  L  NG+L +  K +E M  H  +P    C++L+RG  ++ +  KA  ++
Sbjct: 103 DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCIL 162

Query: 143 EIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA---PDVVTYNTILRTLCDS 199
            ++  SG VPD ITYN++I   C+ G I  AL +LE MS++   PDV+TYNT++R + D 
Sbjct: 163 RVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDY 222

Query: 200 GKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY 259
           G    A+     QL+  C P +ITYT+L+E  C+  G  +A+++L++M  +GC PD+VTY
Sbjct: 223 GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTY 282

Query: 260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319
           N LVN  C+ G L+E    +  + S+G + N +T+N +L S+CS   W + E +L  M  
Sbjct: 283 NSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQ 342

Query: 320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDR 379
               P+V+T+NILIN LC+  LL RAID   +M +  C P+ ++YN VL    KE  +D 
Sbjct: 343 TSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDD 402

Query: 380 AIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439
           AIE L ++ +  C P ++TYN+++  L K G +  A+E+ +Q+ +    P  IT  ++I 
Sbjct: 403 AIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIY 462

Query: 440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP 499
           G  +    E+A ++L+E   +G      TY  ++ GL ++ +++ AI++           
Sbjct: 463 GFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVV---------- 512

Query: 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL 556
                  IML                   T  CKP E  YT +++G+   G+  EA+
Sbjct: 513 ------EIML-------------------TGGCKPDETIYTAIVKGVEEMGMGSEAV 544

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  291 bits (745), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 154/481 (32%), Positives = 264/481 (54%), Gaps = 3/481 (0%)

Query: 103 GFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS 162
            F  +  ++  G  P+ I  ++LI G C  G+  +A  +++ + + G  PD+IT N L++
Sbjct: 142 AFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVN 201

Query: 163 GYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP 219
           G C  G+   A+ ++++M      P+ VTY  +L  +C SG+  LAME+L K  E+    
Sbjct: 202 GLCLSGKEAEAMLLIDKMVEYGCQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKL 261

Query: 220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFL 279
           D + Y+I+I+  CK   +  A  L +EM  KG   +++TYN+L+ G C  GR D+  K L
Sbjct: 262 DAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLL 321

Query: 280 NDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRK 339
            DM      PNV+T ++++ S    G+  +AE L  EM+ +G +P  +T+  LI+  C++
Sbjct: 322 RDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKE 381

Query: 340 GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTY 399
             L +A  +++ M   GC PN  ++N +++G+CK  ++D  +E    M  RG   D VTY
Sbjct: 382 NHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTY 441

Query: 400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT 459
           NTL+   C+ GK++VA E+  ++ ++   P ++TY  ++DGL   G++E+A+++ E++  
Sbjct: 442 NTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEK 501

Query: 460 KGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR 519
             ++ D   Y+ ++ G+    KVD+A  LF  L   GV+P V TYN ++ GLCK      
Sbjct: 502 SKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSE 561

Query: 520 AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
           A  +   M      P   TY ILI     +G A +++ L+ +L   G    +S  ++ + 
Sbjct: 562 AELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGFSVDASTIKMVID 621

Query: 580 M 580
           M
Sbjct: 622 M 622

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
225459022	610	PREDICTED: pentatricopeptide repeat-cont	0.994	0.945	0.807	0.0
147833323	553	hypothetical protein VITISV_026694 [Viti	0.848	0.889	0.894	0.0
297843788	598	pentatricopeptide repeat-containing prot	0.984	0.954	0.752	0.0
15218325	598	pentatricopeptide repeat-containing prot	0.977	0.948	0.753	0.0
449527556	665	PREDICTED: pentatricopeptide repeat-cont	0.932	0.813	0.809	0.0
356510082	602	PREDICTED: pentatricopeptide repeat-cont	0.960	0.925	0.775	0.0
356518398	603	PREDICTED: pentatricopeptide repeat-cont	0.967	0.930	0.770	0.0
356551783	576	PREDICTED: pentatricopeptide repeat-cont	0.984	0.991	0.641	0.0
356498873	566	PREDICTED: pentatricopeptide repeat-cont	0.955	0.978	0.643	0.0
224067108	375	predicted protein [Populus trichocarpa]	0.641	0.992	0.856	0.0

>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like isoform 1 [Vitis vinifera]

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/581 (80%), Positives = 515/581 (88%), Gaps = 4/581 (0%)

Query: 1   RARAIRKVHVGCKVSF-SVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGE 59
           RAR    + +G K  F ++    S + KK  G + QR+N+VFA  + +T S N K+ + E
Sbjct: 33  RARFRSNLVLGYKARFLALSDGTSNECKKIGGSRNQRRNQVFAALRADTFSSNDKLPYAE 92

Query: 60  AFVQGHLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI 119
                HL+ G+ +S   +S    E   SNNHLRRLVRNGELE+GFKFLESMVY GDIPDI
Sbjct: 93  KNQHVHLSGGNYTSNSSSSIEEHE---SNNHLRRLVRNGELEDGFKFLESMVYRGDIPDI 149

Query: 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLER 179
           IPCTSLIRGFC++GKT+KAT VMEI+E SGAVPDVITYNVLISGYC+ GEIDNALQVL+R
Sbjct: 150 IPCTSLIRGFCRIGKTKKATWVMEILEQSGAVPDVITYNVLISGYCKSGEIDNALQVLDR 209

Query: 180 MSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ 239
           M+VAPDVVTYNTILRTLCDSGKL  AMEVL +QL+KECYPDVITYTILIEATCKESGVGQ
Sbjct: 210 MNVAPDVVTYNTILRTLCDSGKLKQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQ 269

Query: 240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR 299
           AMKLLDEMRNKG  PDVVTYNVL+NGICKEGRLDEAIKFLN+MPSYGCQPNVITHNIILR
Sbjct: 270 AMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILR 329

Query: 300 SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTP 359
           SMCSTGRWMDAE+LL++M+ KGCSPSVVTFNILINFLCR+GLLGRAIDILEKMP HGCTP
Sbjct: 330 SMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTP 389

Query: 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 419
           NSLSYNP+LHGFCKEKKMDRAIEYL+IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL
Sbjct: 390 NSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 449

Query: 420 NQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479
           NQLS+K CSPVLITYNTVIDGLSKVGKTE+A+KLL+EMR KGLKPD ITYSSLV GLSRE
Sbjct: 450 NQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITYSSLVSGLSRE 509

Query: 480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY 539
           GKVDEAIK FHDLE LG+RPN ITYNSIMLGLCK+RQT RAID LA M+++ CKPTEATY
Sbjct: 510 GKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAIDFLAYMISKRCKPTEATY 569

Query: 540 TILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
           TILIEGIAYEGLAKEALDLLN+LCSRG+VKKSSAEQVAVKM
Sbjct: 570 TILIEGIAYEGLAKEALDLLNELCSRGLVKKSSAEQVAVKM 610

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]

 Score =  915 bits (2365), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/492 (89%), Positives = 470/492 (95%)

Query: 89  NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDS 148
           NHLRRLVRNGELE+GFKFLESMVY GDIPDIIPCTSLIRGFC++GKT+KAT VMEI+E S
Sbjct: 62  NHLRRLVRNGELEDGFKFLESMVYRGDIPDIIPCTSLIRGFCRIGKTKKATWVMEILEQS 121

Query: 149 GAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEV 208
           GAVPDVITYNVLISGYC+ GEIDNALQVL+RM+VAPDVVTYNTILRTLCDSGKL  AMEV
Sbjct: 122 GAVPDVITYNVLISGYCKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKLKQAMEV 181

Query: 209 LHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK 268
           L +QL+KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG  PDVVTYNVL+NGICK
Sbjct: 182 LDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICK 241

Query: 269 EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVT 328
           EGRLDEAIKFLN+MPSYGCQPNVITHNIILRSMCSTGRWMDAE+LL++M+ KGCSPSVVT
Sbjct: 242 EGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVT 301

Query: 329 FNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMV 388
           FNILINFLCR+GLLGRAIDILEKMP HGCTPNSLSYNP+LHGFCKEKKMDRAIEYL+IMV
Sbjct: 302 FNILINFLCRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV 361

Query: 389 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE 448
           SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS+K CSPVLITYNTVIDGLSKVGKTE
Sbjct: 362 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTE 421

Query: 449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM 508
           +A+KLL+EMR KGLKPD ITYSSLV GLSREGKVDEAIK FHDLE LG+RPN ITYNSIM
Sbjct: 422 RAIKLLDEMRRKGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIM 481

Query: 509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568
           LGLCK+RQT RAID LA M+++ CKPTEATYTILIEGIAYEGLAKEALDLLN+LCSRG+V
Sbjct: 482 LGLCKSRQTDRAIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEALDLLNELCSRGLV 541

Query: 569 KKSSAEQVAVKM 580
           KKSSAEQVAVKM
Sbjct: 542 KKSSAEQVAVKM 553

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  904 bits (2337), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/581 (75%), Positives = 502/581 (86%), Gaps = 10/581 (1%)

Query: 6   RKVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNR---VFAISKVETLSFNVKMKHGEAFV 62
           R+   G K+  S ++  S+  K       +++NR   V A S+VE+   N + +  +   
Sbjct: 22  RECKRGNKLDVSGRTTRSISSKVP--LWSRKRNRLVLVSAASQVESSGLNGRAQKFDTLA 79

Query: 63  QGHLN---NGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI 119
            GH N   NGH SS   NSS   ED ESNNHLR+LVR GELEEGFKFLE+MVYHG++PDI
Sbjct: 80  SGHSNSNGNGHFSSA--NSSFVLEDVESNNHLRQLVRTGELEEGFKFLENMVYHGNVPDI 137

Query: 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLER 179
           IPCT+LIRGFC++GKTRKA +++E++E SGAVPDVITYNV+ISGYC+ GEI+NAL VL+R
Sbjct: 138 IPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDR 197

Query: 180 MSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ 239
           MSV+PDVVTYNTILR+LCDSGKL  AMEVL + L+++CYPDVITYTILIEATC++SGVGQ
Sbjct: 198 MSVSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQ 257

Query: 240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR 299
           AMKLLDEMR++GC PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS GCQPNVITHNIILR
Sbjct: 258 AMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILR 317

Query: 300 SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTP 359
           SMCSTGRWMDAE+LLA+M+ KG SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGC P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQP 377

Query: 360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL 419
           NSLSYNP+LHGFCKEKKMDRAIEYLE MVSRGCYPDIVTYNT+LTALCKDGKV+ AVEIL
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437

Query: 420 NQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE 479
           NQLS+K CSPVLITYNTVIDGL+K GKT +A+KLL+EMR K LKPDTITYSSLVGGLSRE
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSRE 497

Query: 480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY 539
           GKVDEAIK FH+ ER+GVRPN +T+NSIMLGLCK RQT RAID L  M+ R CKPTE +Y
Sbjct: 498 GKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCKPTETSY 557

Query: 540 TILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
           TILIEG+AYEG+AKEAL+LLN+LC++G++K+SSAEQVA KM
Sbjct: 558 TILIEGLAYEGMAKEALELLNELCNKGLMKRSSAEQVAGKM 598

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900 gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  902 bits (2331), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 435/577 (75%), Positives = 499/577 (86%), Gaps = 10/577 (1%)

Query: 7   KVHVGCKVSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHL 66
           K+ V C+ S S+ S   +  +K     + R   V A SKVE+   N + +  E    G+ 
Sbjct: 29  KLDVSCRTSGSISSKIPLGSRK-----RNRLVLVSAASKVESSGLNGRAQKFETLSSGYS 83

Query: 67  N---NGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCT 123
           N   NGH SS   NSS   ED ESNNHLR++VR GELEEGFKFLE+MVYHG++PDIIPCT
Sbjct: 84  NSNGNGHYSS--VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIPCT 141

Query: 124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA 183
           +LIRGFC++GKTRKA +++EI+E SGAVPDVITYNV+ISGYC+ GEI+NAL VL+RMSV+
Sbjct: 142 TLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS 201

Query: 184 PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL 243
           PDVVTYNTILR+LCDSGKL  AMEVL + L+++CYPDVITYTILIEATC++SGVG AMKL
Sbjct: 202 PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKL 261

Query: 244 LDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS 303
           LDEMR++GC PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS GCQPNVITHNIILRSMCS
Sbjct: 262 LDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCS 321

Query: 304 TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLS 363
           TGRWMDAE+LLA+M+ KG SPSVVTFNILINFLCRKGLLGRAIDILEKMP+HGC PNSLS
Sbjct: 322 TGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNSLS 381

Query: 364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS 423
           YNP+LHGFCKEKKMDRAIEYLE MVSRGCYPDIVTYNT+LTALCKDGKV+ AVEILNQLS
Sbjct: 382 YNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLS 441

Query: 424 NKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVD 483
           +K CSPVLITYNTVIDGL+K GKT +A+KLL+EMR K LKPDTITYSSLVGGLSREGKVD
Sbjct: 442 SKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGKVD 501

Query: 484 EAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI 543
           EAIK FH+ ER+G+RPN +T+NSIMLGLCK+RQT RAID L  M+ R CKP E +YTILI
Sbjct: 502 EAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTILI 561

Query: 544 EGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
           EG+AYEG+AKEAL+LLN+LC++G++KKSSAEQVA KM
Sbjct: 562 EGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Cucumis sativus]

 Score =  901 bits (2329), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/542 (80%), Positives = 484/542 (89%), Gaps = 1/542 (0%)

Query: 40  VFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNF-EDFESNNHLRRLVRNG 98
           V A+ +V+T S N ++ HGE  +  HLN    SS   ++     E+ E+NNHLRRLVRNG
Sbjct: 65  VRAVPRVDTFSSNGRLSHGEKNLHTHLNGSSSSSSSYSNHSQSSEEVENNNHLRRLVRNG 124

Query: 99  ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYN 158
           ELEEGFKFLE MV  GDIPDII CTSLIRG CK GKT KATRVMEI+EDSGAVPDVITYN
Sbjct: 125 ELEEGFKFLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYN 184

Query: 159 VLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY 218
           VLISGYC+ GEI +ALQ+L+RMSV+PDVVTYNTILRTLCDSGKL  AMEVL +Q+++ECY
Sbjct: 185 VLISGYCKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLKEAMEVLDRQMQRECY 244

Query: 219 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF 278
           PDVITYTILIEATCKESGVGQAMKLLDEMR+KGC PDVVTYNVL+NGICKEGRLDEAI+F
Sbjct: 245 PDVITYTILIEATCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRF 304

Query: 279 LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR 338
           LN MPSYGCQPNVITHNIILRSMCSTGRWMDAE+ LAEM+ KGCSPSVVTFNILINFLCR
Sbjct: 305 LNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCR 364

Query: 339 KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVT 398
           KGL+GRAID+LEKMP+HGCTPNSLSYNP+LH  CK+KKM+RAIEYL+IMVSRGCYPDIVT
Sbjct: 365 KGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVT 424

Query: 399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458
           YNTLLTALCKDGKVDVAVEILNQL +K CSPVLITYNTVIDGLSKVGKT+ A+KLL+EM+
Sbjct: 425 YNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMK 484

Query: 459 TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY 518
            KGLKPD ITYS+LVGGLSREGKVDEAI  FHDLE +GV+PN ITYNSIMLGLCKARQT 
Sbjct: 485 GKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQTV 544

Query: 519 RAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAV 578
           RAID LA MV R CKPTE +Y ILIEG+AYEGLAKEAL+LLN+LCSRGVVKKSSAEQV V
Sbjct: 545 RAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEALELLNELCSRGVVKKSSAEQVVV 604

Query: 579 KM 580
           K+
Sbjct: 605 KI 606

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max]

 Score =  871 bits (2251), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/569 (77%), Positives = 494/569 (86%), Gaps = 12/569 (2%)

Query: 20  SADSVDFKKHKGFQ--KQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGME- 76
           S+ S  F K K  +  K+ +NRV A+SK E    N +++   +   G LN      GME 
Sbjct: 38  SSVSHHFSKLKATRSRKRLENRVSAVSKSEASGLNGRLQQIVSTPNGDLN----VIGMES 93

Query: 77  -----NSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK 131
                N S +FE+F SN HLR+LVRNGELEEG KFLE M+Y GDIPD+I CTSLIRGFC+
Sbjct: 94  SPIGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTSLIRGFCR 153

Query: 132 VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNT 191
            GKT+KATR+MEI+E+SGAVPDVITYNVLI GYC+ GEID AL+VLERMSVAPDVVTYNT
Sbjct: 154 SGKTKKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALEVLERMSVAPDVVTYNT 213

Query: 192 ILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG 251
           ILR+LCDSGKL  AMEVL +QL++ECYPDVITYTILIEATC +SGVGQAMKLLDEMR KG
Sbjct: 214 ILRSLCDSGKLKEAMEVLDRQLQRECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKG 273

Query: 252 CIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAE 311
           C PDVVTYNVL+NGICKEGRLDEAIKFLN+MPSYGC+PNVITHNIILRSMCSTGRWMDAE
Sbjct: 274 CKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRWMDAE 333

Query: 312 RLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGF 371
           RLL++M+ KGCSPSVVTFNILINFLCRK LLGRAID+LEKMPKHGC PNSLSYNP+LHGF
Sbjct: 334 RLLSDMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGF 393

Query: 372 CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL 431
           C+EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD AVEILNQLS+K CSPVL
Sbjct: 394 CQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVL 453

Query: 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHD 491
           ITYNTVIDGL+KVGKTE A++LLEEMR KGLKPD ITYS+L+ GL REGKVDEAIK+FHD
Sbjct: 454 ITYNTVIDGLTKVGKTEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGKVDEAIKIFHD 513

Query: 492 LERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL 551
           +E L ++P+ +TYN+IMLGLCKA+QT RAID LA MV + CKPTEATYTILIEGIA EGL
Sbjct: 514 MEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTEATYTILIEGIADEGL 573

Query: 552 AKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
           A+EAL+LLN+LCSRG VKKSSAEQV VKM
Sbjct: 574 AEEALELLNELCSRGFVKKSSAEQVVVKM 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max]

 Score =  870 bits (2249), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 444/576 (77%), Positives = 494/576 (85%), Gaps = 15/576 (2%)

Query: 16  FSVQSADSVD--FKKHKGFQ--KQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHI 71
           F +  A SV   F K K  +  K+ +NRV A+SK E    N +++   +   G LN    
Sbjct: 32  FVLSPASSVSHHFTKLKATRSRKRLENRVSAVSKSEASGMNGRLQQIVSTPNGDLNG--- 88

Query: 72  SSGMENSSLN-------FEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTS 124
             GME+SS N       FE+F SN HLR+LVRNGELEEG KFLE M+Y GDIPD+I CTS
Sbjct: 89  -IGMESSSPNGVNGSRSFEEFASNIHLRKLVRNGELEEGLKFLERMIYQGDIPDVIACTS 147

Query: 125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAP 184
           LIRGFC+ GKTRKATR+MEI+E+SGAVPDVITYNVLI GYC+ GEID ALQVLERMSVAP
Sbjct: 148 LIRGFCRSGKTRKATRIMEILENSGAVPDVITYNVLIGGYCKSGEIDKALQVLERMSVAP 207

Query: 185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL 244
           DVVTYNTILR+LCDSGKL  AMEVL +Q+++ECYPDVITYTILIEATC +SGVGQAMKLL
Sbjct: 208 DVVTYNTILRSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLL 267

Query: 245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST 304
           DEMR KGC PDVVTYNVL+NGICKEGRLDEAIKFLN+MP YGCQPNVITHNIILRSMCST
Sbjct: 268 DEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPLYGCQPNVITHNIILRSMCST 327

Query: 305 GRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY 364
           GRWMDAERLLA+M+ KGCSPSVVTFNILINFLCRK LLGRAID+LEKMPKHGC PNSLSY
Sbjct: 328 GRWMDAERLLADMLRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSY 387

Query: 365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN 424
           NP+LHGFC+EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK D AVEILNQLS+
Sbjct: 388 NPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSS 447

Query: 425 KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE 484
           K CSPVLITYNTVIDGL+KVGKTE A +LLEEMR KGLKPD ITYS+L+ GL  EGKVDE
Sbjct: 448 KGCSPVLITYNTVIDGLTKVGKTEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGKVDE 507

Query: 485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544
           AIK+FHD+E L ++P+ +TYN+IMLGLCKA+QT RAID LA MV + CKPT+ATYTILIE
Sbjct: 508 AIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSRAIDFLAYMVEKGCKPTKATYTILIE 567

Query: 545 GIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
           GIA EGLA+EAL+LLN+LCSRG VKKSSAEQVAVKM
Sbjct: 568 GIADEGLAEEALELLNELCSRGFVKKSSAEQVAVKM 603

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max]

 Score =  752 bits (1941), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/574 (64%), Positives = 452/574 (78%), Gaps = 3/574 (0%)

Query: 9   HVGCKVSFSVQSADSVDFKKHKGFQKQRQ--NRVFAISKVETLSFNVKMKHGEAFVQGHL 66
           +V CK          +DF+K KG   ++   N VFA+SK E       ++H E F +G L
Sbjct: 3   NVACKFHVFGLYDGVIDFRKPKGTWSRKHLGNCVFAVSKYENSGLKGNLQHSERFSKGAL 62

Query: 67  NNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLI 126
           N    S    N+SLNFE+ E   HLRRL+RNGELEEG +FLE M   G  PD+I CT+LI
Sbjct: 63  NGVESSPDRVNTSLNFEESEIR-HLRRLIRNGELEEGSRFLEYMTNKGKSPDVIACTALI 121

Query: 127 RGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDV 186
           R FCK+G+T+ A+++M I+E+SGAV DV +YNVLISGYC+ GEI+ AL+VL+RM V+P+ 
Sbjct: 122 REFCKIGRTKNASQIMGILEESGAVIDVTSYNVLISGYCKSGEIEEALRVLDRMGVSPNA 181

Query: 187 VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDE 246
            TY+ +L +LCD GKL  AM+VL +QL+ +CYPDV+T T+LI+ATCKESGVGQAMKL +E
Sbjct: 182 ATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNE 241

Query: 247 MRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGR 306
           MRNKGC PDVVTYNVL+ G CK GRLDEAI+FL  +PSYGCQP+VI+HN+ILRS+CS GR
Sbjct: 242 MRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLCSGGR 301

Query: 307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNP 366
           WMDA +LLA M+ KGC PSVVTFNILINFLC+KGLLG+A+++LE MPKHG TPNS S+NP
Sbjct: 302 WMDAMKLLATMLRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNP 361

Query: 367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH 426
           ++ GFC  K +DRAIEYLEIMVSRGCYPDIVTYN LLTALCKDGKVD AV IL+QLS+K 
Sbjct: 362 LIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKG 421

Query: 427 CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI 486
           CSP LI+YNTVIDGL KVGK E A++LLEEM  KGLKPD IT +S+VGGLSREGKV EA+
Sbjct: 422 CSPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVREAM 481

Query: 487 KLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI 546
           K FH L+R  +RPN   YNSI+ GLCK++QT  AID LADMV + CKPTEATYT LI+GI
Sbjct: 482 KFFHYLKRFAIRPNAFIYNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGI 541

Query: 547 AYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
            YEGLA++A  L N+L SRG+VK+S  E+V++++
Sbjct: 542 TYEGLAEDASKLSNELYSRGLVKRSLVEKVSLEV 575

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Glycine max]

 Score =  733 bits (1893), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/564 (64%), Positives = 439/564 (77%), Gaps = 10/564 (1%)

Query: 10  VGCKVSFSVQSADSVDFKKHKGFQKQRQ--NRVFAISKVETLSFNVKMKHGEAFVQGHLN 67
           + CK      S   +DF+K KG   ++   N VFA+SK E       ++H E F +G LN
Sbjct: 1   MACKSHVFGLSGGVIDFRKPKGTWSRKHLGNCVFAVSKYENSGLKGNLQHSERFSKGALN 60

Query: 68  NGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIR 127
                    N+SLNFE+ E + HL RL+RNGELEEG +FLE M   G IPD++ CT+LIR
Sbjct: 61  G-------VNTSLNFEESEIH-HLCRLIRNGELEEGSRFLEYMTNKGKIPDVVACTALIR 112

Query: 128 GFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVV 187
            FCK+G+T+ ATR+M I+E+SGAV D  +YNVLI+ YC+ GEI+ AL+VL+  SVAP+  
Sbjct: 113 EFCKIGRTKNATRIMGILEESGAVIDANSYNVLINAYCKSGEIEEALRVLDHTSVAPNAA 172

Query: 188 TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM 247
           TY+ +L +LCD GKL  AM+VL +QL+ +CYPDV+T T+LI+ATCKESGVGQAMKL +EM
Sbjct: 173 TYDAVLCSLCDRGKLKQAMQVLDRQLQSKCYPDVVTCTVLIDATCKESGVGQAMKLFNEM 232

Query: 248 RNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW 307
           R KGC PDVVTYNVL+ G CKEGRLDEAI FL  +PSYGCQ +VI+HN+ILRS+CS GRW
Sbjct: 233 RGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLCSGGRW 292

Query: 308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPV 367
           MDA +LLA M+ KGC PSVVTFNILINFLC+KGLLG+A+++LE MPKHG TPNS S+NP+
Sbjct: 293 MDAMKLLATMLRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 352

Query: 368 LHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC 427
           + GFC  K +DRAIE+LEIMVSRGCYPDIVTYN LLTALCKDGKVD AV IL+QLS+K C
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGC 412

Query: 428 SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIK 487
           SP LI+YNTVIDGL KVGK E A++LLEEM  KGLKPD IT +S+VGGLSREGKV EAIK
Sbjct: 413 SPSLISYNTVIDGLLKVGKAELAVELLEEMCYKGLKPDLITCTSVVGGLSREGKVHEAIK 472

Query: 488 LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA 547
            FH L+  G++PN   YNSIM+GLCKA+QT  AID L DMV   CKPTEA+YT LI+GI 
Sbjct: 473 FFHYLKGFGIKPNAFIYNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGIT 532

Query: 548 YEGLAKEALDLLNQLCSRGVVKKS 571
           YEGLA+EA  L N+L SRG+VKKS
Sbjct: 533 YEGLAEEASKLSNELYSRGLVKKS 556

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa] gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]

 Score =  673 bits (1736), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/375 (85%), Positives = 347/375 (92%)

Query: 206 MEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNG 265
           MEVL +QLEKECYPDVITYTILIEATC ESGVGQAMKLLDEM ++GC PDVVTYNVLVNG
Sbjct: 1   MEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNG 60

Query: 266 ICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS 325
           +CKEGRLDEAIKFLN MPSYG QPNVITHNIILRSMCSTGRWMDAE+LL EMV KGCSPS
Sbjct: 61  MCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPS 120

Query: 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLE 385
           VVTFNILINFLCRKGLLGRAIDILEKMP HGCTPNSLSYNP+LHGFCKEKKMDRAI+YLE
Sbjct: 121 VVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLE 180

Query: 386 IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG 445
           IMVSRGCYPDIVTYNT+LTALCKDGKVD AVE+LNQLS+K CSPVLITYNTVIDGLSKVG
Sbjct: 181 IMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVG 240

Query: 446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYN 505
           KT+QA++LL EMR KGLKPD ITYSSL+ GLSREGKV+EAIK FHD+E  GV+PN  TYN
Sbjct: 241 KTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYN 300

Query: 506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR 565
           SIM GLCKA+QT RAID LA M+++ CKPTE +YTILIEGIA EGLAKEAL+LLN+LCSR
Sbjct: 301 SIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSR 360

Query: 566 GVVKKSSAEQVAVKM 580
           GVVKKSSAEQV V++
Sbjct: 361 GVVKKSSAEQVVVRL 375

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	580
TAIR|locus:2024296	598	AT1G09900 "AT1G09900" [Arabido	0.987	0.958	0.753	5.6e-235
TAIR|locus:2084978	602	AT3G04760 [Arabidopsis thalian	0.860	0.828	0.447	2.3e-119
TAIR|locus:2207415	576	AT1G79080 [Arabidopsis thalian	0.825	0.831	0.383	2.3e-87
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.829	0.637	0.322	3.7e-80
TAIR|locus:2015494	629	RPF3 "RNA processing factor 3"	0.794	0.732	0.317	6.3e-76
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.710	0.551	0.353	1.3e-75
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.784	0.722	0.310	1.7e-75
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.777	0.708	0.329	4.5e-75
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.784	0.722	0.312	5.7e-75
TAIR|locus:2025580	559	AT1G08610 [Arabidopsis thalian	0.737	0.765	0.358	5.7e-75

TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)]

 Score = 2266 (802.7 bits), Expect = 5.6e-235, P = 5.6e-235
 Identities = 436/579 (75%), Positives = 502/579 (86%)

Query:     6 RKVHVGCKVSFSVQSADSVDFKKHKGFQKQ-RQNRVFAISKVETLSFNVKMKHGEAFVQG 64
             R+   G K+  S +++ S+  K   G +K+ R   V A SKVE+   N + +  E    G
Sbjct:    22 REYKRGNKLDVSCRTSGSISSKIPLGSRKRNRLVLVSAASKVESSGLNGRAQKFETLSSG 81

Query:    65 HLN---NGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIP 121
             + N   NGH SS   NSS   ED ESNNHLR++VR GELEEGFKFLE+MVYHG++PDIIP
Sbjct:    82 YSNSNGNGHYSS--VNSSFALEDVESNNHLRQMVRTGELEEGFKFLENMVYHGNVPDIIP 139

Query:   122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMS 181
             CT+LIRGFC++GKTRKA +++EI+E SGAVPDVITYNV+ISGYC+ GEI+NAL VL+RMS
Sbjct:   140 CTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMS 199

Query:   182 VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241
             V+PDVVTYNTILR+LCDSGKL  AMEVL + L+++CYPDVITYTILIEATC++SGVG AM
Sbjct:   200 VSPDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAM 259

Query:   242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSM 301
             KLLDEMR++GC PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS GCQPNVITHNIILRSM
Sbjct:   260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319

Query:   302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS 361
             CSTGRWMDAE+LLA+M+ KG SPSVVTFNILINFLCRKGLLGRAIDILEKMP+HGC PNS
Sbjct:   320 CSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPNS 379

Query:   362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421
             LSYNP+LHGFCKEKKMDRAIEYLE MVSRGCYPDIVTYNT+LTALCKDGKV+ AVEILNQ
Sbjct:   380 LSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQ 439

Query:   422 LSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481
             LS+K CSPVLITYNTVIDGL+K GKT +A+KLL+EMR K LKPDTITYSSLVGGLSREGK
Sbjct:   440 LSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK 499

Query:   482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTI 541
             VDEAIK FH+ ER+G+RPN +T+NSIMLGLCK+RQT RAID L  M+ R CKP E +YTI
Sbjct:   500 VDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCKPNETSYTI 559

Query:   542 LIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVKM 580
             LIEG+AYEG+AKEAL+LLN+LC++G++KKSSAEQVA KM
Sbjct:   560 LIEGLAYEGMAKEALELLNELCNKGLMKKSSAEQVAGKM 598

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2084978 AT3G04760 [Arabidopsis thaliana (taxid:3702)]

 Score = 1175 (418.7 bits), Expect = 2.3e-119, P = 2.3e-119
 Identities = 225/503 (44%), Positives = 330/503 (65%)

Query:    77 NSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTR 136
             + SL F D +      R  R+G   E    LE+MV  G  PD+I CT LI+GF  +    
Sbjct:    82 SQSLGFRDTQMLKIFHRSCRSGNYIESLHLLETMVRKGYNPDVILCTKLIKGFFTLRNIP 141

Query:   137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTIL 193
             KA RVMEI+E  G  PDV  YN LI+G+C++  ID+A +VL+RM     +PD VTYN ++
Sbjct:   142 KAVRVMEILEKFGQ-PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYNIMI 200

Query:   194 RTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI 253
              +LC  GKL+LA++VL++ L   C P VITYTILIEAT  E GV +A+KL+DEM ++G  
Sbjct:   201 GSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKLMDEMLSRGLK 260

Query:   254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERL 313
             PD+ TYN ++ G+CKEG +D A + + ++   GC+P+VI++NI+LR++ + G+W + E+L
Sbjct:   261 PDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALLNQGKWEEGEKL 320

Query:   314 LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK 373
             + +M  + C P+VVT++ILI  LCR G +  A+++L+ M + G TP++ SY+P++  FC+
Sbjct:   321 MTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFCR 380

Query:   374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT 433
             E ++D AIE+LE M+S GC PDIV YNT+L  LCK+GK D A+EI  +L    CSP   +
Sbjct:   381 EGRLDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNSSS 440

Query:   434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493
             YNT+   L   G   +A+ ++ EM + G+ PD ITY+S++  L REG VDEA +L  D+ 
Sbjct:   441 YNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREGMVDEAFELLVDMR 500

Query:   494 RLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAK 553
                  P+V+TYN ++LG CKA +   AI++L  MV   C+P E TYT+LIEGI + G   
Sbjct:   501 SCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGIGFAGYRA 560

Query:   554 EALDLLNQLCSRGVVKKSSAEQV 576
             EA++L N L     + + S +++
Sbjct:   561 EAMELANDLVRIDAISEYSFKRL 583

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=IDA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

TAIR|locus:2207415 AT1G79080 [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 187/487 (38%), Positives = 293/487 (60%)

Query:   100 LEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV 159
             L + F  LES+V  G  P++   T L+   CK  + +KA RV+E++  SG +PD   Y  
Sbjct:    87 LSDSFSHLESLVTGGHKPNVAHSTQLLYDLCKANRLKKAIRVIELMVSSGIIPDASAYTY 146

Query:   160 LISGYCRLGEIDNALQVLERMS---VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216
             L++  C+ G +  A+Q++E+M       + VTYN ++R LC  G LN +++ + + ++K 
Sbjct:   147 LVNQLCKRGNVGYAMQLVEKMEDHGYPSNTVTYNALVRGLCMLGSLNQSLQFVERLMQKG 206

Query:   217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAI 276
               P+  TY+ L+EA  KE G  +A+KLLDE+  KG  P++V+YNVL+ G CKEGR D+A+
Sbjct:   207 LAPNAFTYSFLLEAAYKERGTDEAVKLLDEIIVKGGEPNLVSYNVLLTGFCKEGRTDDAM 266

Query:   277 KFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL 336
                 ++P+ G + NV+++NI+LR +C  GRW +A  LLAEM     +PSVVT+NILIN L
Sbjct:   267 ALFRELPAKGFKANVVSYNILLRCLCCDGRWEEANSLLAEMDGGDRAPSVVTYNILINSL 326

Query:   337 CRKGLLGRAIDILEKMPK--HGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP 394
                G   +A+ +L++M K  H     + SYNPV+   CKE K+D  ++ L+ M+ R C P
Sbjct:   327 AFHGRTEQALQVLKEMSKGNHQFRVTATSYNPVIARLCKEGKVDLVVKCLDEMIYRRCKP 386

Query:   395 DIVTYNTLLTALCK-DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKL 453
             +  TYN +  +LC+ + KV  A  I+  LSNK        Y +VI  L + G T  A +L
Sbjct:   387 NEGTYNAI-GSLCEHNSKVQEAFYIIQSLSNKQKCCTHDFYKSVITSLCRKGNTFAAFQL 445

Query:   454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL-GVRPNVITYNSIMLGLC 512
             L EM   G  PD  TYS+L+ GL  EG    A+++   +E     +P V  +N+++LGLC
Sbjct:   446 LYEMTRCGFDPDAHTYSALIRGLCLEGMFTGAMEVLSIMEESENCKPTVDNFNAMILGLC 505

Query:   513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS 572
             K R+T  A+++   MV +   P E TY IL+EGIA+E   + A ++L++L  R V+ +++
Sbjct:   506 KIRRTDLAMEVFEMMVEKKRMPNETTYAILVEGIAHEDELELAKEVLDELRLRKVIGQNA 565

Query:   573 AEQVAVK 579
              +++ ++
Sbjct:   566 VDRIVMQ 572

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 158/490 (32%), Positives = 279/490 (56%)

Query:    95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATR-VMEIVEDSGAVPD 153
             +  G+L+   +  E MV  G     +    ++ GFCK G+   A   + E+    G  PD
Sbjct:   235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294

Query:   154 VITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLH 210
               T+N L++G C+ G + +A+++++ M      PDV TYN+++  LC  G++  A+EVL 
Sbjct:   295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354

Query:   211 KQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG 270
             + + ++C P+ +TY  LI   CKE+ V +A +L   + +KG +PDV T+N L+ G+C   
Sbjct:   355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414

Query:   271 RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFN 330
                 A++   +M S GC+P+  T+N+++ S+CS G+  +A  +L +M L GC+ SV+T+N
Sbjct:   415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474

Query:   331 ILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR 390
              LI+  C+      A +I ++M  HG + NS++YN ++ G CK ++++ A + ++ M+  
Sbjct:   475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534

Query:   391 GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQA 450
             G  PD  TYN+LLT  C+ G +  A +I+  +++  C P ++TY T+I GL K G+ E A
Sbjct:   535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594

Query:   451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHD-LERLGVRPNVITYNSIML 509
              KLL  ++ KG+      Y+ ++ GL R+ K  EAI LF + LE+    P+ ++Y  +  
Sbjct:   595 SKLLRSIQMKGINLTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFR 654

Query:   510 GLCKARQTYR-AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568
             GLC      R A+D L +++ +   P  ++  +L EG+    + +  + L+N +  +   
Sbjct:   655 GLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLLTLSMEETLVKLVNMVMQKA-- 712

Query:   569 KKSSAEQVAV 578
              + S E+V++
Sbjct:   713 -RFSEEEVSM 721

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 765 (274.4 bits), Expect = 6.3e-76, P = 6.3e-76
 Identities = 148/466 (31%), Positives = 268/466 (57%)

Query:   118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVL 177
             D+     LI  FC+  +   A  V+  +   G  PD++T + L++GYC    I  A+ ++
Sbjct:   114 DLYSYNILINCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALV 173

Query:   178 ERMSVA---PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKE 234
             ++M V    P+ VT+NT++  L    K + A+ ++ + + + C PD+ TY  ++   CK 
Sbjct:   174 DQMFVMEYQPNTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKR 233

Query:   235 SGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVIT 293
               +  A+ LL +M  KG I  DVV Y  +++ +C    +++A+    +M + G +PNV+T
Sbjct:   234 GDIDLALSLLKKME-KGKIEADVVIYTTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVT 292

Query:   294 HNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP 353
             +N ++R +C+ GRW DA RLL++M+ +  +P+VVTF+ LI+   ++G L  A  + ++M 
Sbjct:   293 YNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMI 352

Query:   354 KHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD 413
             K    P+  +Y+ +++GFC   ++D A    E+M+S+ C+P++VTYNTL+   CK  +V+
Sbjct:   353 KRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVE 412

Query:   414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLV 473
               +E+  ++S +      +TYNT+I GL + G  + A K+ ++M + G+ PD ITYS L+
Sbjct:   413 EGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILL 472

Query:   474 GGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK 533
              GL + GK+++A+ +F  L++  + P++ TYN ++ G+CKA +     D+   +  +  K
Sbjct:   473 DGLCKYGKLEKALVVFEYLQKSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVK 532

Query:   534 PTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
             P    YT +I G   +GL +EA  L  ++   G +  S      ++
Sbjct:   533 PNVIIYTTMISGFCRKGLKEEADALFREMKEDGTLPNSGTYNTLIR 578

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006397 "mRNA processing" evidence=IMP

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 762 (273.3 bits), Expect = 1.3e-75, P = 1.3e-75
 Identities = 147/416 (35%), Positives = 247/416 (59%)

Query:   157 YNVLISGYCRLGEIDNALQVL---ERMSVAPDVVTYNTIL-RTLCDSGKLNLAMEVLHKQ 212
             +++++  Y RL  ID AL ++   +     P V++YN +L  T+     ++ A  V  + 
Sbjct:   137 FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEM 196

Query:   213 LEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRL 272
             LE +  P+V TY ILI   C    +  A+ L D+M  KGC+P+VVTYN L++G CK  ++
Sbjct:   197 LESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKI 256

Query:   273 DEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNIL 332
             D+  K L  M   G +PN+I++N+++  +C  GR  +   +L EM  +G S   VT+N L
Sbjct:   257 DDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTL 316

Query:   333 INFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC 392
             I   C++G   +A+ +  +M +HG TP+ ++Y  ++H  CK   M+RA+E+L+ M  RG 
Sbjct:   317 IKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGL 376

Query:   393 YPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMK 452
              P+  TY TL+    + G ++ A  +L ++++   SP ++TYN +I+G    GK E A+ 
Sbjct:   377 CPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIA 436

Query:   453 LLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC 512
             +LE+M+ KGL PD ++YS+++ G  R   VDEA+++  ++   G++P+ ITY+S++ G C
Sbjct:   437 VLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFC 496

Query:   513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568
             + R+T  A D+  +M+     P E TYT LI     EG  ++AL L N++  +GV+
Sbjct:   497 EQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVL 552

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
 Identities = 142/458 (31%), Positives = 263/458 (57%)

Query:   125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA- 183
             LI  FC+  +   A  V+  +   G  P+++T + L++GYC    I  A+ ++++M V  
Sbjct:   122 LINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTG 181

Query:   184 --PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241
               P+ VT+NT++  L    K + AM ++ + + K C PD++TY +++   CK      A 
Sbjct:   182 YQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAF 241

Query:   242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSM 301
              LL++M      P V+ YN +++G+CK   +D+A+    +M + G +PNV+T++ ++  +
Sbjct:   242 NLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCL 301

Query:   302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS 361
             C+ GRW DA RLL++M+ +  +P V TF+ LI+   ++G L  A  + ++M K    P+ 
Sbjct:   302 CNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSI 361

Query:   362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421
             ++Y+ +++GFC   ++D A +  E MVS+ C+PD+VTYNTL+   CK  +V+  +E+  +
Sbjct:   362 VTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFRE 421

Query:   422 LSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481
             +S +      +TYN +I GL + G  + A ++ +EM + G+ P+ +TY++L+ GL + GK
Sbjct:   422 MSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGK 481

Query:   482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTI 541
             +++A+ +F  L+R  + P + TYN ++ G+CKA +     D+  ++  +  KP    Y  
Sbjct:   482 LEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGVKPDVVAYNT 541

Query:   542 LIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
             +I G   +G  +EA  L  ++   G +  S      ++
Sbjct:   542 MISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIR 579

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 757 (271.5 bits), Expect = 4.5e-75, P = 4.5e-75
 Identities = 150/455 (32%), Positives = 263/455 (57%)

Query:   108 ESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL 167
             + M   G   ++   + +I  FC+  K   A   M  +   G  P+ IT++ LI+G C  
Sbjct:   112 KQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLE 171

Query:   168 GEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY 224
             G +  AL++++RM      PD++T NT++  LC SGK   AM ++ K +E  C P+ +TY
Sbjct:   172 GRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYGCQPNAVTY 231

Query:   225 TILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 284
               ++   CK      AM+LL +M  +    D V Y+++++G+CK G LD A    N+M  
Sbjct:   232 GPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEM 291

Query:   285 YGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGR 344
              G   N+IT+NI++   C+ GRW D  +LL +M+ +  +P+VVTF++LI+   ++G L  
Sbjct:   292 KGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLRE 351

Query:   345 AIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 404
             A ++ ++M   G  P++++Y  ++ GFCKE  +D+A + +++MVS+GC P+I T+N L+ 
Sbjct:   352 AEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILIN 411

Query:   405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP 464
               CK  ++D  +E+  ++S +      +TYNT+I G  ++GK   A +L +EM ++ + P
Sbjct:   412 GYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPP 471

Query:   465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDIL 524
             + +TY  L+ GL   G+ ++A+++F  +E+  +  ++  YN I+ G+C A +   A D+ 
Sbjct:   472 NIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLF 531

Query:   525 ADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLL 559
               +  +  KP   TY I+I G+  +G   EA +LL
Sbjct:   532 CSLPLKGVKPGVKTYNIMIGGLCKKGPLSEA-ELL 565

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 143/458 (31%), Positives = 260/458 (56%)

Query:   125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM---S 181
             LI  FC+  +   A  V+  +   G  PD++T N L++G+C    I +A+ ++ +M    
Sbjct:   122 LINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVSLVGQMVEMG 181

Query:   182 VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM 241
               PD  T+NT++  L    + + A+ ++ + + K C PD++TY I++   CK   +  A+
Sbjct:   182 YQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKGCQPDLVTYGIVVNGLCKRGDIDLAL 241

Query:   242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSM 301
              LL +M      P VV YN +++ +C    +++A+    +M + G +PNV+T+N ++R +
Sbjct:   242 SLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNVVTYNSLIRCL 301

Query:   302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS 361
             C+ GRW DA RLL++M+ +  +P+VVTF+ LI+   ++G L  A  + ++M K    P+ 
Sbjct:   302 CNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDI 361

Query:   362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421
              +Y+ +++GFC   ++D A    E+M+S+ C+P++VTYNTL+   CK  +VD  +E+  +
Sbjct:   362 FTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKRVDEGMELFRE 421

Query:   422 LSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK 481
             +S +      +TY T+I G  +  + + A  + ++M + G+ PD +TYS L+ GL   GK
Sbjct:   422 MSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSILLDGLCNNGK 481

Query:   482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTI 541
             V+ A+ +F  L+R  + P++ TYN ++ G+CKA +     D+   +  +  KP   TYT 
Sbjct:   482 VETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTT 541

Query:   542 LIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK 579
             ++ G   +GL +EA  L  ++   G +  S      ++
Sbjct:   542 MMSGFCRKGLKEEADALFREMKEEGPLPDSGTYNTLIR 579

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2025580 AT1G08610 [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 155/432 (35%), Positives = 253/432 (58%)

Query:    84 DFESNNH-LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVM 142
             D E+NN  L  L  NG+L +  K +E M  H  +P    C++L+RG  ++ +  KA  ++
Sbjct:   103 DEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMCIL 162

Query:   143 EIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA---PDVVTYNTILRTLCDS 199
              ++  SG VPD ITYN++I   C+ G I  AL +LE MS++   PDV+TYNT++R + D 
Sbjct:   163 RVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLSGSPPDVITYNTVIRCMFDY 222

Query:   200 GKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY 259
             G    A+     QL+  C P +ITYT+L+E  C+  G  +A+++L++M  +GC PD+VTY
Sbjct:   223 GNAEQAIRFWKDQLQNGCPPFMITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTY 282

Query:   260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL 319
             N LVN  C+ G L+E    +  + S+G + N +T+N +L S+CS   W + E +L  M  
Sbjct:   283 NSLVNYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQ 342

Query:   320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDR 379
                 P+V+T+NILIN LC+  LL RAID   +M +  C P+ ++YN VL    KE  +D 
Sbjct:   343 TSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAMSKEGMVDD 402

Query:   380 AIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID 439
             AIE L ++ +  C P ++TYN+++  L K G +  A+E+ +Q+ +    P  IT  ++I 
Sbjct:   403 AIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDDITRRSLIY 462

Query:   440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP 499
             G  +    E+A ++L+E   +G      TY  ++ GL ++ +++ AI++   +   G +P
Sbjct:   463 GFCRANLVEEAGQVLKETSNRGNGIRGSTYRLVIQGLCKKKEIEMAIEVVEIMLTGGCKP 522

Query:   500 NVITYNSIMLGL 511
             +   Y +I+ G+
Sbjct:   523 DETIYTAIVKGV 534

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3EDF8	PPR28_ARATH	No assigned EC number	0.7538	0.9775	0.9481	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	580
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-44
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-26
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-25
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	3e-23
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-21
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-18
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-15
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	5e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-13
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-12
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-12
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	2e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	3e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-07
pfam01535	31	pfam01535, PPR, PPR repeat	2e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-06
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	5e-06
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
pfam01535	31	pfam01535, PPR, PPR repeat	1e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-05
pfam01535	31	pfam01535, PPR, PPR repeat	6e-05
pfam01535	31	pfam01535, PPR, PPR repeat	7e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	7e-04
pfam01535	31	pfam01535, PPR, PPR repeat	9e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.002
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.003

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  168 bits (428), Expect = 3e-44
 Identities = 117/470 (24%), Positives = 213/470 (45%), Gaps = 47/470 (10%)

Query: 70  HISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESM----------VYHGDIPDI 119
            +++     S   +  E  +   RL+R+G +++    LE M          +YH      
Sbjct: 356 SLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAK---- 411

Query: 120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGA------VPDVITYNVLISGYCRLGEIDNA 173
                    F K  K ++A      V+++         P + T+N+L+S      +ID A
Sbjct: 412 ---------FFKACKKQRA------VKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGA 456

Query: 174 LQVL---ERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEA 230
           L+VL   +   +  D   Y T++ T   SGK++   EV H+ +      +V T+  LI+ 
Sbjct: 457 LRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDG 516

Query: 231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM--PSYGCQ 288
             +   V +A      MR+K   PD V +N L++   + G +D A   L +M   ++   
Sbjct: 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID 576

Query: 289 PNVITHNIILRSMCSTG---RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRA 345
           P+ IT   ++++  + G   R  +  +++ E  +KG +P V T  I +N   +KG    A
Sbjct: 577 PDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKG-TPEVYT--IAVNSCSQKGDWDFA 633

Query: 346 IDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA 405
           + I + M K G  P+ + ++ ++        +D+A E L+    +G     V+Y++L+ A
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

Query: 406 LCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD 465
                    A+E+   + +    P + T N +I  L +  +  +A+++L EM+  GL P+
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

Query: 466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR 515
           TITYS L+    R+   D  + L    +  G++PN++    I  GLC  R
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLRR 802

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  114 bits (287), Expect = 1e-26
 Identities = 136/560 (24%), Positives = 232/560 (41%), Gaps = 105/560 (18%)

Query: 86  ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKA-TRVMEI 144
           +SN+ LR L  +G+LE+  K LESM       D     +L R  C+  +  +  +RV   
Sbjct: 53  DSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSR 111

Query: 145 VEDS-----------------------------GAVP--DVITYNVLISGYCRLGEIDNA 173
              S                             G +P  D+ ++NVL+ GY + G  D A
Sbjct: 112 ALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA 171

Query: 174 LQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAM------EVLHKQLEKECYPDVITY 224
           L +  RM    V PDV T+  +LRT C  G  +LA        V+    E +   DV+  
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRT-C-GGIPDLARGREVHAHVVRFGFELDV--DVVNA 227

Query: 225 TILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS 284
            I +   C +  V  A  + D M  + CI    ++N +++G  + G   E ++    M  
Sbjct: 228 LITMYVKCGD--VVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTMRE 281

Query: 285 YGCQPNVITHNIILRSMCSTGRWMDAERLLAEM----VLKGCSPSVVTFNILINFLCRKG 340
               P+++T    + S+ S    +  ERL  EM    V  G +  V   N LI      G
Sbjct: 282 LSVDPDLMT----ITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLG 337

Query: 341 LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYN 400
             G A  +  +M     T +++S+  ++ G+ K    D+A+E   +M      PD +T  
Sbjct: 338 SWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIA 393

Query: 401 TLLTALCKDGKVDVAVEILNQLSNK--HCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458
           ++L+A    G +DV V+ L++L+ +    S V++  N +I+  SK    ++A+++   + 
Sbjct: 394 SVLSACACLGDLDVGVK-LHELAERKGLISYVVVA-NALIEMYSKCKCIDKALEVFHNIP 451

Query: 459 TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY 518
            K    D I+++S++ GL    +  EA+  F  +  L ++PN +T  +  L  C      
Sbjct: 452 EK----DVISWTSIIAGLRLNNRCFEALIFFRQM-LLTLKPNSVTLIAA-LSACARIGAL 505

Query: 519 RA-------------------IDILADMVTR------------SCKPTEATYTILIEGIA 547
                                 + L D+  R            S +    ++ IL+ G  
Sbjct: 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYV 565

Query: 548 YEGLAKEALDLLNQLCSRGV 567
             G    A++L N++   GV
Sbjct: 566 AHGKGSMAVELFNRMVESGV 585

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  111 bits (278), Expect = 2e-25
 Identities = 107/450 (23%), Positives = 192/450 (42%), Gaps = 21/450 (4%)

Query: 97  NGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT 156
           NGE  EG +   +M      PD++  TS+I     +G  R    +   V  +G   DV  
Sbjct: 266 NGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSV 325

Query: 157 YNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE 216
            N LI  Y  LG    A +V  RM    D V++  ++     +G  + A+E      +  
Sbjct: 326 CNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGYEKNGLPDKALETYALMEQDN 384

Query: 217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAI 276
             PD IT   ++ A      +   +KL +    KG I  VV  N L+    K   +D+A+
Sbjct: 385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444

Query: 277 KFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL 336
           +  +++P    + +VI+   I+  +    R  +A     +M+L    P+ VT    ++  
Sbjct: 445 EVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSAC 499

Query: 337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI 396
            R G L    +I   + + G   +    N +L  + +  +M+ A              D+
Sbjct: 500 ARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-----HEKDV 554

Query: 397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEE 456
           V++N LLT     GK  +AVE+ N++     +P  +T+ +++   S+ G   Q ++    
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614

Query: 457 MRTK-GLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR 515
           M  K  + P+   Y+ +V  L R GK+ EA      + ++ + P+   + + +L  C+  
Sbjct: 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNF---INKMPITPDPAVWGA-LLNACR-- 668

Query: 516 QTYRAIDI--LADMVTRSCKPTEATYTILI 543
             +R +++  LA        P    Y IL+
Sbjct: 669 -IHRHVELGELAAQHIFELDPNSVGYYILL 697

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  104 bits (260), Expect = 3e-23
 Identities = 108/466 (23%), Positives = 190/466 (40%), Gaps = 58/466 (12%)

Query: 118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVL 177
           D+    +LI  + K G    A  V     D     D I++N +ISGY   GE    L++ 
Sbjct: 221 DVDVVNALITMYVKCGDVVSARLVF----DRMPRRDCISWNAMISGYFENGECLEGLELF 276

Query: 178 ERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP-DVITYTILIEATCK 233
             M   SV PD++T  +++      G   L  E+ H  + K  +  DV     LI+    
Sbjct: 277 FTMRELSVDPDLMTITSVISACELLGDERLGREM-HGYVVKTGFAVDVSVCNSLIQMYLS 335

Query: 234 ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVIT 293
               G+A K+   M  K    D V++  +++G  K G  D+A++    M      P+ IT
Sbjct: 336 LGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

Query: 294 HNIILRSMCSTGRWMDAERLLAEMVL-KGCSPSVVTFNILINFLCRKGLLGRAIDILEKM 352
              +L S C+    +D    L E+   KG    VV  N LI    +   + +A+++   +
Sbjct: 392 IASVL-SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI 450

Query: 353 PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV 412
           P+     + +S+  ++ G     +   A+ +   M+     P+ VT    L+A  + G +
Sbjct: 451 PEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGAL 505

Query: 413 DVAVEI--------------------------------LNQLSNKHCSPVLITYNTVIDG 440
               EI                                 NQ ++      ++++N ++ G
Sbjct: 506 MCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS--HEKDVVSWNILLTG 563

Query: 441 LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-RLGVRP 499
               GK   A++L   M   G+ PD +T+ SL+   SR G V + ++ FH +E +  + P
Sbjct: 564 YVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP 623

Query: 500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545
           N+  Y  ++  L +A +   A + +  M      P  A +  L+  
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNA 666

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 96.9 bits (241), Expect = 8e-21
 Identities = 53/213 (24%), Positives = 101/213 (47%), Gaps = 2/213 (0%)

Query: 358 TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE 417
            P   ++N ++      + +D A+  L ++   G   D   Y TL++   K GKVD   E
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493

Query: 418 ILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS 477
           + +++ N      + T+  +IDG ++ G+  +A      MR+K +KPD + +++L+    
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG 553

Query: 478 REGKVDEAIKLFHDL--ERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT 535
           + G VD A  +  ++  E   + P+ IT  ++M     A Q  RA ++   +   + K T
Sbjct: 554 QSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGT 613

Query: 536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGVV 568
              YTI +   + +G    AL + + +  +GV 
Sbjct: 614 PEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVK 646

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 87.2 bits (216), Expect = 6e-18
 Identities = 87/426 (20%), Positives = 167/426 (39%), Gaps = 68/426 (15%)

Query: 136 RKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRT 195
           R    V   VE SG  PD    N ++  + + G + +A ++ + M    ++ ++ TI+  
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGG 198

Query: 196 LCDSGKLNLAMEVLHKQLEK--ECYPDVITYTILIEATCKESGVGQ-----AMKL----- 243
           L D+G    A  +  +  E   +  P      +   A    +  GQ      +K      
Sbjct: 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258

Query: 244 ------LDEMRNK-GCIPD------------VVTYNVLVNGICKEGRLDEAIKFLNDMPS 284
                 L +M +K G I D             V +N ++ G    G  +EA+    +M  
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318

Query: 285 YGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGR 344
            G   +  T +I++R          A++  A ++  G    +V    L++   + G +  
Sbjct: 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMED 378

Query: 345 AIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT 404
           A ++ ++MP+     N +S+N ++ G+    +  +A+E  E M++ G  P+ VT+  +L+
Sbjct: 379 ARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434

Query: 405 ALCKDGKVDVAVEILNQLSNKH-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK--- 460
           A    G  +   EI   +S  H   P  + Y  +I+ L + G  ++A  ++     K   
Sbjct: 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTV 494

Query: 461 ---------------------------GLKPDTI-TYSSLVGGLSREGKVDEAIKLFHDL 492
                                      G+ P+ +  Y  L+   +  G+  EA K+   L
Sbjct: 495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL 554

Query: 493 ERLGVR 498
           +R G+ 
Sbjct: 555 KRKGLS 560

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 86.8 bits (215), Expect = 7e-18
 Identities = 87/377 (23%), Positives = 159/377 (42%), Gaps = 24/377 (6%)

Query: 94  LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD 153
           LV  G   E F     M   G   +      ++R    +G  R   ++   V  +G V D
Sbjct: 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGD 258

Query: 154 VITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL 213
                 LI  Y + G+I++A  V + M      V +N++L      G    A+ + ++  
Sbjct: 259 TFVSCALIDMYSKCGDIEDARCVFDGMPEK-TTVAWNSMLAGYALHGYSEEALCLYYEMR 317

Query: 214 EKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLD 273
           +     D  T++I+I    + + +  A +    +   G   D+V    LV+   K GR++
Sbjct: 318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRME 377

Query: 274 EAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILI 333
           +A    + MP    + N+I+ N ++    + GR   A  +   M+ +G +P+ VTF  ++
Sbjct: 378 DARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433

Query: 334 NFLCRKGLLGRAIDILEKMPK-HGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC 392
           +     GL  +  +I + M + H   P ++ Y  ++    +E  +D A      M+ R  
Sbjct: 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA----MIRRA- 488

Query: 393 YPDIVTYN---TLLTALCKDGK----VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG 445
            P   T N    LLTA C+  K      +A E L  +  +  +  ++  N         G
Sbjct: 489 -PFKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYN----SSG 542

Query: 446 KTEQAMKLLEEMRTKGL 462
           +  +A K++E ++ KGL
Sbjct: 543 RQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 76.7 bits (190), Expect = 8e-18
 Identities = 24/49 (48%), Positives = 38/49 (77%)

Query: 254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC 302
           PDVVTYN L++G CK+G+++EA+K  N+M   G +PNV T++I++  +C
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 73.2 bits (181), Expect = 2e-16
 Identities = 24/50 (48%), Positives = 38/50 (76%)

Query: 219 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK 268
           PDV+TY  LI+  CK+  V +A+KL +EM+ +G  P+V TY++L++G+CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 71.7 bits (177), Expect = 6e-16
 Identities = 18/50 (36%), Positives = 33/50 (66%)

Query: 359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK 408
           P+ ++YN ++ G+CK+ K++ A++    M  RG  P++ TY+ L+  LCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.9 bits (175), Expect = 1e-15
 Identities = 24/50 (48%), Positives = 42/50 (84%)

Query: 464 PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK 513
           PD +TY++L+ G  ++GKV+EA+KLF+++++ G++PNV TY+ ++ GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 69.7 bits (172), Expect = 3e-15
 Identities = 26/50 (52%), Positives = 37/50 (74%)

Query: 429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR 478
           P ++TYNT+IDG  K GK E+A+KL  EM+ +G+KP+  TYS L+ GL +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 78.0 bits (192), Expect = 5e-15
 Identities = 96/436 (22%), Positives = 169/436 (38%), Gaps = 60/436 (13%)

Query: 133 GKTRKATRVMEIVEDSGAVP-DVITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVT 188
           G+ R+A  + EI+E          TY+ L+     L  I     V   +      PD   
Sbjct: 101 GRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYM 160

Query: 189 YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR 248
            N +L      G                         +LI+A           +L DEM 
Sbjct: 161 MNRVLLMHVKCG-------------------------MLIDAR----------RLFDEMP 185

Query: 249 NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW- 307
            +    ++ ++  ++ G+   G   EA     +M   G      T  ++LR+  S G   
Sbjct: 186 ER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA--SAGLGS 239

Query: 308 MDAERLLAEMVLK-GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTP-NSLSYN 365
             A + L   VLK G          LI+   + G +  A  + + MP+      NS+   
Sbjct: 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAG 299

Query: 366 PVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNK 425
             LHG+ +E     A+     M   G   D  T++ ++    +   ++ A +    L  +
Sbjct: 300 YALHGYSEE-----ALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-R 353

Query: 426 HCSPVLITYNT-VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE 484
              P+ I  NT ++D  SK G+ E A  + + M  K L    I++++L+ G    G+  +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTK 409

Query: 485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV-TRSCKPTEATYTILI 543
           A+++F  +   GV PN +T+ +++     +  + +  +I   M      KP    Y  +I
Sbjct: 410 AVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMI 469

Query: 544 EGIAYEGLAKEALDLL 559
           E +  EGL  EA  ++
Sbjct: 470 ELLGREGLLDEAYAMI 485

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 21/50 (42%), Positives = 33/50 (66%), Gaps = 3/50 (6%)

Query: 152 PDVITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCD 198
           PDV+TYN LI GYC+ G+++ AL++   M    + P+V TY+ ++  LC 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 21/50 (42%), Positives = 34/50 (68%)

Query: 184 PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK 233
           PDVVTYNT++   C  GK+  A+++ ++  ++   P+V TY+ILI+  CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 19/50 (38%), Positives = 33/50 (66%)

Query: 289 PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR 338
           P+V+T+N ++   C  G+  +A +L  EM  +G  P+V T++ILI+ LC+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 66.7 bits (164), Expect = 3e-14
 Identities = 20/50 (40%), Positives = 31/50 (62%)

Query: 324 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK 373
           P VVT+N LI+  C+KG +  A+ +  +M K G  PN  +Y+ ++ G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 65.5 bits (161), Expect = 8e-14
 Identities = 23/50 (46%), Positives = 35/50 (70%)

Query: 394 PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK 443
           PD+VTYNTL+   CK GKV+ A+++ N++  +   P + TY+ +IDGL K
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.0 bits (157), Expect = 3e-13
 Identities = 19/47 (40%), Positives = 30/47 (63%)

Query: 499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG 545
           P+V+TYN+++ G CK  +   A+ +  +M  R  KP   TY+ILI+G
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 63.1 bits (155), Expect = 4e-13
 Identities = 19/34 (55%), Positives = 28/34 (82%)

Query: 250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283
           KG  PDVVTYN L++G+C+ GR+DEA++ L++M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 69.9 bits (171), Expect = 2e-12
 Identities = 67/316 (21%), Positives = 127/316 (40%), Gaps = 16/316 (5%)

Query: 255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLL 314
              TY+ LV        +         + S G +P+    N +L      G  +DA RL 
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181

Query: 315 AEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE 374
            EM  +    ++ ++  +I  L   G    A  +  +M + G      ++  +L      
Sbjct: 182 DEMPER----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237

Query: 375 KKMDRAIEYLEIMVSR-GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT 433
               RA + L   V + G   D      L+    K G ++ A  + + +  K      + 
Sbjct: 238 GSA-RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVA 292

Query: 434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493
           +N+++ G +  G +E+A+ L  EMR  G+  D  T+S ++   SR   ++ A +    L 
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352

Query: 494 RLGVRPNVITYNSIMLGL-CKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLA 552
           R G  P  I  N+ ++ L  K  +   A ++   M  ++      ++  LI G    G  
Sbjct: 353 RTGF-PLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRG 407

Query: 553 KEALDLLNQLCSRGVV 568
            +A+++  ++ + GV 
Sbjct: 408 TKAVEMFERMIAEGVA 423

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 60.9 bits (149), Expect = 3e-12
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR 166
           PD++   +LI G+CK GK  +A ++   ++  G  P+V TY++LI G C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 68.0 bits (166), Expect = 7e-12
 Identities = 101/438 (23%), Positives = 177/438 (40%), Gaps = 44/438 (10%)

Query: 46  VETLSFNVKMKHGEAFVQGHLNNGHI-SSGMENSSLNFEDFES-NNHLRRLVRNGELEEG 103
           V    F V +    + +Q +L+ G    +    S +  +D  S    +    +NG  ++ 
Sbjct: 314 VVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKA 373

Query: 104 FKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG 163
            +    M      PD I   S++     +G      ++ E+ E  G +  V+  N LI  
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433

Query: 164 YCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLH--KQLEKECYPDV 221
           Y +   ID AL+V   +    DV+++ +I+  L  +   N   E L   +Q+     P+ 
Sbjct: 434 YSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLN---NRCFEALIFFRQMLLTLKPNS 489

Query: 222 ITYTILIEATCKESGVGQAMK------LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA 275
           +T    + A C   G     K      L   +   G +P     N L++   + GR++ A
Sbjct: 490 VTLIAALSA-CARIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYA 543

Query: 276 IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF 335
               N       + +V++ NI+L    + G+   A  L   MV  G +P  VTF   I+ 
Sbjct: 544 WNQFN-----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTF---ISL 595

Query: 336 LC---RKGLLGRAIDILEKM-PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG 391
           LC   R G++ + ++    M  K+  TPN   Y  V+    +  K+  A  ++  M    
Sbjct: 596 LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT- 654

Query: 392 CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC---SPVLITYNTVIDGL-SKVGKT 447
             PD   +  LL A      V+     L +L+ +H     P  + Y  ++  L +  GK 
Sbjct: 655 --PDPAVWGALLNACRIHRHVE-----LGELAAQHIFELDPNSVGYYILLCNLYADAGKW 707

Query: 448 EQAMKLLEEMRTKGLKPD 465
           ++  ++ + MR  GL  D
Sbjct: 708 DEVARVRKTMRENGLTVD 725

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 57.7 bits (141), Expect = 3e-11
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP 353
           KG  P VVT+N LI+ LCR G +  A+++L++M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 57/271 (21%), Positives = 117/271 (43%), Gaps = 8/271 (2%)

Query: 88  NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVED 147
           N+ L     +G  EE       M   G   D    + +IR F ++     A +    +  
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353

Query: 148 SGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAME 207
           +G   D++    L+  Y + G +++A  V +RM    +++++N ++    + G+   A+E
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVE 412

Query: 208 VLHKQLEKECYPDVITYTILIEATCKESG-VGQAMKLLDEM-RNKGCIPDVVTYNVLVNG 265
           +  + + +   P+ +T+  ++ A C+ SG   Q  ++   M  N    P  + Y  ++  
Sbjct: 413 MFERMIAEGVAPNHVTFLAVLSA-CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471

Query: 266 ICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS 325
           + +EG LDEA   +   P    +P V     +L + C   + ++  RL AE +       
Sbjct: 472 LGREGLLDEAYAMIRRAP---FKPTVNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEK 527

Query: 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHG 356
           +  + +L+N     G    A  ++E + + G
Sbjct: 528 LNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 55.4 bits (135), Expect = 2e-10
 Identities = 17/34 (50%), Positives = 23/34 (67%)

Query: 148 SGAVPDVITYNVLISGYCRLGEIDNALQVLERMS 181
            G  PDV+TYN LI G CR G +D A+++L+ M 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 53.9 bits (131), Expect = 7e-10
 Identities = 18/32 (56%), Positives = 26/32 (81%)

Query: 390 RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 421
           +G  PD+VTYNTL+  LC+ G+VD AVE+L++
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.9 bits (118), Expect = 5e-08
 Identities = 19/34 (55%), Positives = 28/34 (82%)

Query: 460 KGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE 493
           KGLKPD +TY++L+ GL R G+VDEA++L  ++E
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 16/34 (47%), Positives = 22/34 (64%)

Query: 215 KECYPDVITYTILIEATCKESGVGQAMKLLDEMR 248
           K   PDV+TY  LI+  C+   V +A++LLDEM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 46.6 bits (112), Expect = 2e-07
 Identities = 16/34 (47%), Positives = 26/34 (76%)

Query: 425 KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR 458
           K   P ++TYNT+IDGL + G+ ++A++LL+EM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 47.5 bits (114), Expect = 2e-07
 Identities = 16/35 (45%), Positives = 26/35 (74%)

Query: 257 VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV 291
           VTYN L++G+CK GR++EA++   +M   G +P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 46.6 bits (112), Expect = 3e-07
 Identities = 13/33 (39%), Positives = 21/33 (63%)

Query: 286 GCQPNVITHNIILRSMCSTGRWMDAERLLAEMV 318
           G +P+V+T+N ++  +C  GR  +A  LL EM 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 18/35 (51%), Positives = 29/35 (82%)

Query: 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT 466
           +TYNT+IDGL K G+ E+A++L +EM+ +G++PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 51.8 bits (122), Expect = 3e-07
 Identities = 52/237 (21%), Positives = 96/237 (40%), Gaps = 11/237 (4%)

Query: 328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS-LSYNPVLHGFCKEKKMDRAIEYLEI 386
              +L   L + G L  A+++LEK  +    PN   +   +        K + A+E LE 
Sbjct: 61  LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEK 120

Query: 387 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL--SNKHCSPVLITYNTVIDGLSKV 444
            ++    PD+      L AL + G  + A+E+  +    +   + +      +   L  +
Sbjct: 121 ALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180

Query: 445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITY 504
           G+ E+A++LLE+        D     +L     + GK +EA++ +     L    N    
Sbjct: 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL-DPDNAEAL 239

Query: 505 NSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQ 561
            ++ L L +  +   A++ L        K  E    +   G+A   L  EAL+LL +
Sbjct: 240 YNLALLLLELGRYEEALEALE-------KALELDPDLYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL 462
           +TYN++I G  K GK E+A++L +EM+ KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.8 bits (102), Expect = 5e-06
 Identities = 14/35 (40%), Positives = 28/35 (80%)

Query: 467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV 501
           +TY++L+ GL + G+V+EA++LF +++  G+ P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 42.9 bits (102), Expect = 5e-06
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP 464
           L TYN ++  L+K G  + A+ +LEEM+  GLKP
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS 361
           VT+N LI+ LC+ G +  A+++ ++M + G  P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.3 bits (101), Expect = 9e-06
 Identities = 14/30 (46%), Positives = 24/30 (80%)

Query: 182 VAPDVVTYNTILRTLCDSGKLNLAMEVLHK 211
           + PDVVTYNT++  LC +G+++ A+E+L +
Sbjct: 3   LKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 11/33 (33%), Positives = 21/33 (63%)

Query: 356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMV 388
           G  P+ ++YN ++ G C+  ++D A+E L+ M 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 21/34 (61%)

Query: 363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI 396
           +YN ++ G CK  +++ A+E  + M  RG  PD+
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 14/31 (45%), Positives = 21/31 (67%)

Query: 257 VTYNVLVNGICKEGRLDEAIKFLNDMPSYGC 287
           VTYN L++G CK G+L+EA++   +M   G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.8 bits (109), Expect = 2e-05
 Identities = 41/232 (17%), Positives = 78/232 (33%), Gaps = 5/232 (2%)

Query: 268 KEGRLDEAIKFLNDM-PSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP-S 325
             G L EA++ L +               ++  ++   GR  +A  LL + +     P  
Sbjct: 35  LLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNL 94

Query: 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLE 385
                 L   L   G    A+++LEK       P+       L    +    + A+E  E
Sbjct: 95  AEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYE 154

Query: 386 --IMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK 443
             + +             L   L   G+ + A+E+L +    +          +     K
Sbjct: 155 KALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK 214

Query: 444 VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL 495
           +GK E+A++  E+        +     +L   L   G+ +EA++       L
Sbjct: 215 LGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265

Length = 291

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 13/26 (50%), Positives = 21/26 (80%)

Query: 155 ITYNVLISGYCRLGEIDNALQVLERM 180
           +TYN LISGYC+ G+++ AL++ + M
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEM 26

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 5e-05
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV 326
           +T+N ++  +C  GR  +A  L  EM  +G  P V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.7 bits (94), Expect = 6e-05
 Identities = 13/31 (41%), Positives = 24/31 (77%)

Query: 467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGV 497
           +TY+SL+ G  + GK++EA++LF +++  GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 39.7 bits (94), Expect = 7e-05
 Identities = 11/31 (35%), Positives = 20/31 (64%)

Query: 327 VTFNILINFLCRKGLLGRAIDILEKMPKHGC 357
           VT+N LI+  C+ G L  A+++ ++M + G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 13/33 (39%), Positives = 26/33 (78%)

Query: 496 GVRPNVITYNSIMLGLCKARQTYRAIDILADMV 528
           G++P+V+TYN+++ GLC+A +   A+++L +M 
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 3/35 (8%)

Query: 155 ITYNVLISGYCRLGEIDNALQVLERM---SVAPDV 186
           +TYN LI G C+ G ++ AL++ + M    + PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.3 bits (93), Expect = 2e-04
 Identities = 12/41 (29%), Positives = 19/41 (46%)

Query: 91  LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK 131
           +    + G++EE  K    M   G  P++   + LI G CK
Sbjct: 10  IDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%)

Query: 397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP 429
           VTYNTL+  LCK G+V+ A+E+  ++  +   P
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 154 VITYNVLISGYCRLGEIDNALQVLERM 180
           + TYN L+    + G+ D AL VLE M
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEM 27

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 187 VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDV 221
           VTYNT++  LC +G++  A+E+  +  E+   PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTP 359
           + T+N L+  L + G    A+ +LE+M   G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 9e-04
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGC 392
           +YN ++ G+CK  K++ A+E  + M  +G 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 12/31 (38%), Positives = 21/31 (67%)

Query: 397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHC 427
           VTYN+L++  CK GK++ A+E+  ++  K  
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQP 289
           + TYN L+  + K G  D A+  L +M + G +P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTE 536
           +TYN+++ GLCKA +   A+++  +M  R  +P  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 10/34 (29%), Positives = 16/34 (47%)

Query: 291 VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP 324
           + T+N +L ++   G    A  +L EM   G  P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.003
 Identities = 15/35 (42%), Positives = 22/35 (62%)

Query: 222 ITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV 256
           +TY  LI+  CK   V +A++L  EM+ +G  PDV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	580
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.96
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.95
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.94
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.93
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.92
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.91
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
PRK14574	822	hmsH outer membrane protein; Provisional	99.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.84
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.84
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.83
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.83
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG2076	895	consensus RNA polymerase III transcription factor	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
KOG2076	895	consensus RNA polymerase III transcription factor	99.78
KOG2003	840	consensus TPR repeat-containing protein [General f	99.77
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.71
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.71
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.71
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.69
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.68
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.68
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.67
KOG1126	638	consensus DNA-binding cell division cycle control	99.67
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.67
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
KOG1126	638	consensus DNA-binding cell division cycle control	99.62
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.61
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.59
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.58
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.57
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.55
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.54
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.52
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.52
PRK12370	553	invasion protein regulator; Provisional	99.5
PRK12370	553	invasion protein regulator; Provisional	99.5
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.49
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.49
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.46
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.46
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.46
KOG1129	478	consensus TPR repeat-containing protein [General f	99.45
KOG1129	478	consensus TPR repeat-containing protein [General f	99.44
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.43
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.42
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.39
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.38
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.36
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.36
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.36
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.35
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.33
PRK11189	296	lipoprotein NlpI; Provisional	99.32
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.3
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.29
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.28
PRK11189	296	lipoprotein NlpI; Provisional	99.28
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.23
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.23
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.21
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.2
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.19
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.16
PF13041	50	PPR_2: PPR repeat family	99.16
PF13041	50	PPR_2: PPR repeat family	99.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.15
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.12
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.11
PRK04841	903	transcriptional regulator MalT; Provisional	99.08
PRK04841	903	transcriptional regulator MalT; Provisional	99.07
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.04
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.03
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.02
KOG1125	579	consensus TPR repeat-containing protein [General f	99.01
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	99.0
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.97
PLN02789	320	farnesyltranstransferase	98.96
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.93
KOG1125	579	consensus TPR repeat-containing protein [General f	98.93
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.91
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.91
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.85
PLN02789	320	farnesyltranstransferase	98.84
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.83
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.82
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.8
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.76
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.75
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.74
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.72
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.7
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.7
PRK15359	144	type III secretion system chaperone protein SscB;	98.7
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.69
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.66
PRK15359	144	type III secretion system chaperone protein SscB;	98.65
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.6
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.57
PF12854	34	PPR_1: PPR repeat	98.55
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.53
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.53
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.48
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.46
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.45
PF12854	34	PPR_1: PPR repeat	98.43
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.37
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.35
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.31
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.23
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.15
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.12
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.11
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.08
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.04
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.04
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.02
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.0
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.97
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.96
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.95
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.94
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.93
KOG0553	304	consensus TPR repeat-containing protein [General f	97.93
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.93
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.88
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.86
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.86
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.85
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.85
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.78
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.78
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.78
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.77
KOG0553	304	consensus TPR repeat-containing protein [General f	97.77
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.74
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.73
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.72
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.72
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.71
PF12688	120	TPR_5: Tetratrico peptide repeat	97.69
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.68
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.66
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.65
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.6
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.59
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.59
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.57
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.55
PRK10803	263	tol-pal system protein YbgF; Provisional	97.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.54
PF12688	120	TPR_5: Tetratrico peptide repeat	97.54
KOG1258	577	consensus mRNA processing protein [RNA processing	97.54
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.52
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.5
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.5
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.46
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.46
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.41
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.41
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.4
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.37
PRK15331	165	chaperone protein SicA; Provisional	97.35
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.34
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.34
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.33
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.33
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.33
PF13371	73	TPR_9: Tetratricopeptide repeat	97.29
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.23
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.2
PRK15331	165	chaperone protein SicA; Provisional	97.17
PRK10803	263	tol-pal system protein YbgF; Provisional	97.13
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.07
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.05
KOG1258	577	consensus mRNA processing protein [RNA processing	97.01
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.97
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.96
PF13371	73	TPR_9: Tetratricopeptide repeat	96.94
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.94
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.89
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.84
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.79
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.73
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.71
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.64
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.61
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.6
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.58
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.58
KOG4555	175	consensus TPR repeat-containing protein [Function	96.57
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.52
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.46
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.44
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.42
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.4
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.34
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.31
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.24
PRK11906	458	transcriptional regulator; Provisional	96.12
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.07
PRK11906	458	transcriptional regulator; Provisional	96.03
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.03
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.01
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.99
KOG1585	308	consensus Protein required for fusion of vesicles	95.99
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.98
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.98
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.91
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.82
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.81
PF13428	44	TPR_14: Tetratricopeptide repeat	95.81
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.8
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.76
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.69
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.65
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.6
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.56
PF13428	44	TPR_14: Tetratricopeptide repeat	95.55
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.52
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.51
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.51
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.48
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.33
PF13512	142	TPR_18: Tetratricopeptide repeat	95.23
KOG1585	308	consensus Protein required for fusion of vesicles	95.22
PF13512	142	TPR_18: Tetratricopeptide repeat	95.17
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.02
KOG4555	175	consensus TPR repeat-containing protein [Function	94.99
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	94.92
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.9
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.79
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.62
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.52
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.36
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.15
PF13431	34	TPR_17: Tetratricopeptide repeat	94.11
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.91
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.72
PF13431	34	TPR_17: Tetratricopeptide repeat	93.7
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.66
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.42
KOG3941	406	consensus Intermediate in Toll signal transduction	93.28
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.26
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.08
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.03
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	92.93
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	92.87
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	92.79
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.78
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	92.69
KOG3941	406	consensus Intermediate in Toll signal transduction	92.6
KOG4234	271	consensus TPR repeat-containing protein [General f	92.52
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.46
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.37
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.31
PRK09687	280	putative lyase; Provisional	92.26
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.18
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.11
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.97
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	91.92
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	91.74
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	91.69
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.5
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	91.49
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.36
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	91.25
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	90.35
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.13
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	89.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	89.04
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.99
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	88.84
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	88.68
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	88.55
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.4
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.34
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.32
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.97
KOG4234	271	consensus TPR repeat-containing protein [General f	87.86
KOG2471	696	consensus TPR repeat-containing protein [General f	87.81
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	87.75
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	87.57
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	87.56
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.34
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.29
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	87.15
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.87
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.86
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.71
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	86.49
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.42
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	86.22
COG4455	273	ImpE Protein of avirulence locus involved in tempe	86.15
KOG4648	536	consensus Uncharacterized conserved protein, conta	85.98
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	85.82
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	85.67
PRK09687	280	putative lyase; Provisional	85.64
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	85.59
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	85.53
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.29
COG3947	361	Response regulator containing CheY-like receiver a	85.19
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.82
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	84.66
KOG1586	288	consensus Protein required for fusion of vesicles	84.51
KOG4648	536	consensus Uncharacterized conserved protein, conta	84.09
COG1747	711	Uncharacterized N-terminal domain of the transcrip	83.81
COG3947	361	Response regulator containing CheY-like receiver a	83.75
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	83.41
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	83.41
KOG4570	418	consensus Uncharacterized conserved protein [Funct	83.29
KOG1586	288	consensus Protein required for fusion of vesicles	82.47
KOG4570	418	consensus Uncharacterized conserved protein [Funct	82.42
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	82.27
PF07575	566	Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0	82.06
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	81.77
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.58
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	81.3
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	81.14
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	80.54
KOG4507	886	consensus Uncharacterized conserved protein, conta	80.5
KOG2471	696	consensus TPR repeat-containing protein [General f	80.21

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-66  Score=547.14  Aligned_cols=483  Identities=24%  Similarity=0.357  Sum_probs=296.1

Q ss_pred             cccHHHHHHHHHHcCChHHHHHHHHHHHhCCC-CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           84 DFESNNHLRRLVRNGELEEGFKFLESMVYHGD-IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      ...+..++..+.+.|++++|+++|++|...|. +++..+++.++..|.+.|..++|..+|+.|..    ||..+|+.++.
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~  445 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS  445 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence            35677788888888888888888888887764 34445555555666666666666666655542    55666666666


Q ss_pred             HHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144          163 GYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ  239 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  239 (580)
                      +|++.|++++|.++|++|   +..||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus       446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            666666666666666655   45566666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144          240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS--YGCQPNVITHNIILRSMCSTGRWMDAERLLAEM  317 (580)
Q Consensus       240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  317 (580)
                      |.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|..  .++.||..+|+.++.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            666666666666666666666666666666666666666666644  345566666666666666666666666666666


Q ss_pred             HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043144          318 VLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV  397 (580)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  397 (580)
                      .+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~  685 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV  685 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS  477 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  477 (580)
                      +|+.+|.+|++.|++++|.++|++|.+.+..|+..+|+.++.+|++.|++++|.++|++|...|+.||..||+.++.+|+
T Consensus       686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~  765 (1060)
T PLN03218        686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE  765 (1060)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            66666666666666666666666666555556666666666666666666666666666666666666666666666666


Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHcCCCC
Q 043144          478 REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----A-------------------RQTYRAIDILADMVTRSCKP  534 (580)
Q Consensus       478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~~  534 (580)
                      +.|++++|.+++.+|.+.|+.||..+|+.++..|.+    .                   +..++|..+|++|.+.|+.|
T Consensus       766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P  845 (1060)
T PLN03218        766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP  845 (1060)
T ss_pred             HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence            666666666666666666666666666665543321    0                   11245556666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144          535 TEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK  570 (580)
Q Consensus       535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  570 (580)
                      |..||..++.+++..+..+.+..+++.|...+..++
T Consensus       846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~  881 (1060)
T PLN03218        846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQK  881 (1060)
T ss_pred             CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcc
Confidence            666666555554455555555555554444444333

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.8e-66  Score=545.35  Aligned_cols=486  Identities=22%  Similarity=0.364  Sum_probs=462.1

Q ss_pred             CCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144           81 NFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL  160 (580)
Q Consensus        81 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  160 (580)
                      .++...++.++..|.+.|..++|+.+|+.|..    |+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.|
T Consensus       403 ~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsL  478 (1060)
T PLN03218        403 DMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL  478 (1060)
T ss_pred             CchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            44556677888999999999999999999853    89999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043144          161 ISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGV  237 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  237 (580)
                      +.+|++.|++++|.++|++|   +..||..+|+.+|.+|++.|++++|.++|++|...|+.||..+|+.+|.+|++.|++
T Consensus       479 I~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~  558 (1060)
T PLN03218        479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV  558 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999999   778999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          238 GQAMKLLDEMRN--KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLA  315 (580)
Q Consensus       238 ~~A~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  315 (580)
                      ++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|+
T Consensus       559 deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~  638 (1060)
T PLN03218        559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD  638 (1060)
T ss_pred             HHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999986  578999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144          316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD  395 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  395 (580)
                      +|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus       639 eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd  718 (1060)
T PLN03218        639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPT  718 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG  475 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  475 (580)
                      ..+|+.+|.+|++.|++++|.++|++|...++.||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..
T Consensus       719 vvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIgl  798 (1060)
T PLN03218        719 VSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGL  798 (1060)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             HHh----C-------------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043144          476 LSR----E-------------------GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC  532 (580)
Q Consensus       476 ~~~----~-------------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  532 (580)
                      |.+    +                   +..++|..+|++|.+.|+.||..+|+.++.++++.+..+.+..+++.|...+.
T Consensus       799 c~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~  878 (1060)
T PLN03218        799 CLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISAD  878 (1060)
T ss_pred             HHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCC
Confidence            542    1                   23468999999999999999999999999888899999999999999988888


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 043144          533 KPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS  572 (580)
Q Consensus       533 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~  572 (580)
                      .|+..+|+.+++++.+.  .++|..++++|...|+.|+-.
T Consensus       879 ~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        879 SQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             CcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            99999999999998432  368999999999999998764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-65  Score=538.13  Aligned_cols=484  Identities=19%  Similarity=0.286  Sum_probs=463.1

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHG-DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLI  161 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  161 (580)
                      +..+|+.++..+.+.|++++|+++|+.|...+ ..||..+|+.++.+|.+.++++.|.+++..|.+.|+.||+.+|+.++
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            44689999999999999999999999998764 67999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 043144          162 SGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM  241 (580)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  241 (580)
                      .+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.++.+.|..+.+.
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999996 58999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144          242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG  321 (580)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  321 (580)
                      +++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .+|..+|+.++.+|++.|++++|.++|++|.+.|
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g  320 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSG  320 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999997    5699999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 043144          322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNT  401 (580)
Q Consensus       322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  401 (580)
                      +.||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.    .||..+|+.
T Consensus       321 ~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~  396 (697)
T PLN03081        321 VSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNA  396 (697)
T ss_pred             CCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999986    479999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhCC
Q 043144          402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT-KGLKPDTITYSSLVGGLSREG  480 (580)
Q Consensus       402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g  480 (580)
                      +|.+|++.|+.++|.++|++|.+.++.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|
T Consensus       397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G  476 (697)
T PLN03081        397 LIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREG  476 (697)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999986 599999999999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN  560 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  560 (580)
                      ++++|.++++++   +..|+..+|+.|+.+|...|+++.|..+++++.+.+ +.+..+|..|++.|.+.|++++|.++++
T Consensus       477 ~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        477 LLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             CHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence            999999998876   568999999999999999999999999999997542 4457899999999999999999999999


Q ss_pred             HHHhCCCCCchhHHHHHhh
Q 043144          561 QLCSRGVVKKSSAEQVAVK  579 (580)
Q Consensus       561 ~~~~~g~~~~~~~~~~~v~  579 (580)
                      .|.+.|+.++++++|+.++
T Consensus       553 ~m~~~g~~k~~g~s~i~~~  571 (697)
T PLN03081        553 TLKRKGLSMHPACTWIEVK  571 (697)
T ss_pred             HHHHcCCccCCCeeEEEEC
Confidence            9999999999999887553

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4.5e-65  Score=546.09  Aligned_cols=506  Identities=22%  Similarity=0.300  Sum_probs=475.2

Q ss_pred             hHHhhhcccCCCccccc--cccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChH
Q 043144           59 EAFVQGHLNNGHISSGM--ENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTR  136 (580)
Q Consensus        59 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  136 (580)
                      ..++.++...|.+..+.  ......++..+||.++.+|.+.|++++|+++|++|...|..||..+|+.++.+|++.|+.+
T Consensus       226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~  305 (857)
T PLN03077        226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER  305 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChH
Confidence            34455566666554331  1223345778999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      .|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+|+.++.+|++.|++++|+++|++|.+.|
T Consensus       306 ~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g  384 (857)
T PLN03077        306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDN  384 (857)
T ss_pred             HHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999999996 5899999999999999999999999999999999


Q ss_pred             CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 043144          217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNI  296 (580)
Q Consensus       217 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  296 (580)
                      +.||..+|+.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.    .+|..+|+.
T Consensus       385 ~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~vs~~~  460 (857)
T PLN03077        385 VSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTS  460 (857)
T ss_pred             CCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC----CCCeeeHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999998    468899999


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC
Q 043144          297 ILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK  376 (580)
Q Consensus       297 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  376 (580)
                      ++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|+++.+.+++..+.+.|+.++..+++.++.+|++.|+
T Consensus       461 mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~  539 (857)
T PLN03077        461 IIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR  539 (857)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC
Confidence            99999999999999999999986 58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144          377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEE  456 (580)
Q Consensus       377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  456 (580)
                      +++|.++|+.+     .||..+|+.+|.+|++.|+.++|.++|++|.+.++.||..||+.++.+|.+.|++++|.++|+.
T Consensus       540 ~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~  614 (857)
T PLN03077        540 MNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS  614 (857)
T ss_pred             HHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHH
Confidence            99999999987     5799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HH-HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043144          457 MR-TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT  535 (580)
Q Consensus       457 m~-~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  535 (580)
                      |. +.|+.|+..+|+.++++|++.|++++|.+++++|   .++||..+|++|+.+|...|+.+.+....+++.+.. +.+
T Consensus       615 M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~  690 (857)
T PLN03077        615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNS  690 (857)
T ss_pred             HHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCC
Confidence            99 6799999999999999999999999999999998   368999999999999999999999999998888753 556


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHHhh
Q 043144          536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVAVK  579 (580)
Q Consensus       536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~v~  579 (580)
                      ...|..|.+.|...|+|++|.++.+.|.+.|+.++++++|+.|+
T Consensus       691 ~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~  734 (857)
T PLN03077        691 VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVK  734 (857)
T ss_pred             cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEEC
Confidence            78888999999999999999999999999999999999998764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7e-65  Score=544.57  Aligned_cols=488  Identities=19%  Similarity=0.283  Sum_probs=382.6

Q ss_pred             HHhhhcccCCCccccc--cccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHH
Q 043144           60 AFVQGHLNNGHISSGM--ENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRK  137 (580)
Q Consensus        60 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  137 (580)
                      .++.++...|.+..+.  ......++.++||.++.+|.+.|++++|+++|++|...|..||..+|+.++.+|.+.+++..
T Consensus       126 ~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~  205 (857)
T PLN03077        126 AMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLAR  205 (857)
T ss_pred             HHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhh
Confidence            3344455555443331  12223457789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043144          138 ATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC  217 (580)
Q Consensus       138 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  217 (580)
                      +.+++..+.+.|+.||+.+++.|+.+|++.|++++|..+|++|. .||..+|+.++.+|++.|++++|+++|++|...|+
T Consensus       206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~  284 (857)
T PLN03077        206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-RRDCISWNAMISGYFENGECLEGLELFFTMRELSV  284 (857)
T ss_pred             HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999999999996 57899999999999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144          218 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII  297 (580)
Q Consensus       218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  297 (580)
                      .||..+|+.++.+|++.|+++.|.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.+
T Consensus       285 ~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~l  360 (857)
T PLN03077        285 DPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAM  360 (857)
T ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHH
Confidence            999999999999999999999999999999888888888888888888888888888888888886    4677788888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144          298 LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM  377 (580)
Q Consensus       298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  377 (580)
                      +.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.|+.+|++.|++
T Consensus       361 i~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~  440 (857)
T PLN03077        361 ISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCI  440 (857)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCH
Confidence            88888888888888888888888888888888777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH---------------------
Q 043144          378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNT---------------------  436 (580)
Q Consensus       378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~---------------------  436 (580)
                      ++|.++|++|.+    +|..+|+.++.+|++.|+.++|..+|++|.. +..||..+|+.                     
T Consensus       441 ~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~  515 (857)
T PLN03077        441 DKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV  515 (857)
T ss_pred             HHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence            777777766642    3555566666666666666666666655553 24555555554                     


Q ss_pred             --------------HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 043144          437 --------------VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVI  502 (580)
Q Consensus       437 --------------l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  502 (580)
                                    ++++|++.|++++|.++|+++     .||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..
T Consensus       516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~  590 (857)
T PLN03077        516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV  590 (857)
T ss_pred             HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence                          555555555555555555554     4567777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMV-TRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      ||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|..++++|.+.|++++|.+++++|
T Consensus       591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m  651 (857)
T PLN03077        591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM  651 (857)
T ss_pred             cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence            77777777777777777777777777 4567777777777777777777777777777776

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1.7e-60  Score=498.80  Aligned_cols=479  Identities=17%  Similarity=0.268  Sum_probs=441.3

Q ss_pred             CCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 043144           79 SLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYN  158 (580)
Q Consensus        79 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  158 (580)
                      .+.++..+|+.++.++.+.++++.|.+++..|...|..||..+++.++.+|++.|+++.|.++|++|.    .||..+|+
T Consensus       118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n  193 (697)
T PLN03081        118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP----ERNLASWG  193 (697)
T ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC----CCCeeeHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999986    47999999


Q ss_pred             HHHHHHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC
Q 043144          159 VLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES  235 (580)
Q Consensus       159 ~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  235 (580)
                      .++.+|++.|++++|+++|++|   +..||..+|+.++.++++.|..+.+.+++..+.+.|+.||..+++.++.+|++.|
T Consensus       194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g  273 (697)
T PLN03081        194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG  273 (697)
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence            9999999999999999999999   7889999999999999999999999999999999999999999999999999999


Q ss_pred             CHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          236 GVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLA  315 (580)
Q Consensus       236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  315 (580)
                      ++++|.++|++|..    +|..+||.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++.
T Consensus       274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~  349 (697)
T PLN03081        274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA  349 (697)
T ss_pred             CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence            99999999999964    58999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144          316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD  395 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  395 (580)
                      .|.+.|++||..+++.|+++|++.|++++|.++|++|.+    ||..+|+.||.+|++.|+.++|+++|++|.+.|+.||
T Consensus       350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd  425 (697)
T PLN03081        350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN  425 (697)
T ss_pred             HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence            999999999999999999999999999999999999975    5899999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSN-KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG  474 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  474 (580)
                      ..||+.++.+|++.|.+++|.++|+.|.+ .++.|+..+|+.++++|++.|++++|.+++++|   ++.|+..+|+.|+.
T Consensus       426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~  502 (697)
T PLN03081        426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT  502 (697)
T ss_pred             HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence            99999999999999999999999999986 588999999999999999999999999999876   57899999999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH---HH----
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEA-TYTILIE---GI----  546 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~---~~----  546 (580)
                      +|...|+++.|..+++++.+.++. +..+|..|++.|++.|++++|.+++++|.+.|+...+. +|..+..   .+    
T Consensus       503 a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d  581 (697)
T PLN03081        503 ACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGD  581 (697)
T ss_pred             HHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCC
Confidence            999999999999999999866543 57799999999999999999999999999998764432 3322110   00    


Q ss_pred             ----HhcCCHHHHHHHHHHHHhCCCCCchhH
Q 043144          547 ----AYEGLAKEALDLLNQLCSRGVVKKSSA  573 (580)
Q Consensus       547 ----~~~g~~~~A~~~~~~~~~~g~~~~~~~  573 (580)
                          ....-++...++..+|.+.|..|+...
T Consensus       582 ~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~  612 (697)
T PLN03081        582 RLHPQSREIYQKLDELMKEISEYGYVAEENE  612 (697)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHcCCCCCcch
Confidence                011224566788899999998887543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.5e-32  Score=302.06  Aligned_cols=470  Identities=14%  Similarity=0.105  Sum_probs=290.2

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+...|++++|++.|+.+.... +........++..+.+.|++++|..+++.+.... +.++.++..++..|
T Consensus       398 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  475 (899)
T TIGR02917       398 AARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIY  475 (899)
T ss_pred             HHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHH
Confidence            355666667777777777777777776652 2233445556666667777777777777666543 45566666677777


Q ss_pred             HhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144          165 CRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      ...|++++|.+.|+++  ..+.+...+..++..+...|++++|.+.|+++.... +.+..++..+...+.+.|++++|..
T Consensus       476 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  554 (899)
T TIGR02917       476 LGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVA  554 (899)
T ss_pred             HhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777665  223344556666666667777777777777666553 2345566666666666677777777


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      .++++.+.+ +.+...+..++..|...|++++|..+++++.+.. +.+...|..+..++...|++++|...|+.+.+.. 
T Consensus       555 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  631 (899)
T TIGR02917       555 WLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-  631 (899)
T ss_pred             HHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            766666553 2245556666666666666666666666665443 4455666666666666666666666666666543 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      +.+...+..+..++...|++++|...++++.+..+. +..++..++..+...|++++|..+++.+.+.++ ++...+..+
T Consensus       632 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~  709 (899)
T TIGR02917       632 PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELE  709 (899)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHH
Confidence            334455666666666666666666666666654322 455666666666666666666666666665532 244555566


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV  482 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  482 (580)
                      ...+...|++++|...|+.+....  |+..++..++.++.+.|++++|.+.++++.+.. +.+...+..+...|...|++
T Consensus       710 ~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~  786 (899)
T TIGR02917       710 GDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDY  786 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence            666666666666666666666554  333455556666666666666666666666543 33555666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      ++|...|+++.+..+. +..+++.++..+...|+ ++|+..++++.+.. +.++.++..++.++...|++++|.++++++
T Consensus       787 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  863 (899)
T TIGR02917       787 DKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKA  863 (899)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            6666666666655432 55566666666666666 55666666666542 444555556666666666666666666666


Q ss_pred             HhCCCC
Q 043144          563 CSRGVV  568 (580)
Q Consensus       563 ~~~g~~  568 (580)
                      ++.++.
T Consensus       864 ~~~~~~  869 (899)
T TIGR02917       864 VNIAPE  869 (899)
T ss_pred             HhhCCC
Confidence            665544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.1e-31  Score=295.23  Aligned_cols=469  Identities=15%  Similarity=0.105  Sum_probs=275.8

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+.+.|++++|.++|+++... .+.+...+..+...+...|++++|...|+.+.... +........++..+
T Consensus       364 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~  441 (899)
T TIGR02917       364 AALSLLGEAYLALGDFEKAAEYLAKATEL-DPENAAARTQLGISKLSQGDPSEAIADLETAAQLD-PELGRADLLLILSY  441 (899)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC-CcchhhHHHHHHHH
Confidence            34555566666666666666666666554 23344555566666666666666666666665544 23334444555666


Q ss_pred             HhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144          165 CRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      .+.|++++|+.+++++  ..+++..+|..++..+...|++++|.+.|+++.+.. +.+...+..++..+...|++++|.+
T Consensus       442 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~  520 (899)
T TIGR02917       442 LRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQ  520 (899)
T ss_pred             HhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHH
Confidence            6666666666666665  333445566666666666666666666666665543 2234455556666666666666666


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      .++.+.+.+ +.+..++..++..+...|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.+.. 
T Consensus       521 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  597 (899)
T TIGR02917       521 RFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-  597 (899)
T ss_pred             HHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-
Confidence            666665543 2245556666666666666666666666665443 3344555556666666666666666666665442 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      +.+...|..+..++...|++++|...|+++.+... .+...+..+...+.+.|++++|...|+++.+..+ .+..++..+
T Consensus       598 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l  675 (899)
T TIGR02917       598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKP-DNTEAQIGL  675 (899)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHH
Confidence            34455666666666666666666666666655432 2445555666666666666666666666655422 134456666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV  482 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  482 (580)
                      +..+...|++++|..+++.+.+.. +++...+..+...+...|++++|...|+.+...+  |+..++..++.++.+.|++
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~  752 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNT  752 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCH
Confidence            666666666666666666665544 3344555556666666666666666666666542  3335555566666666666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      ++|.+.++++.+..+. +...+..++..|...|++++|...|+++.+.. ++++.++..++..+...|+ ++|..+++++
T Consensus       753 ~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~  829 (899)
T TIGR02917       753 AEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKA  829 (899)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHH
Confidence            6666666666554332 55566666666666666666666666666553 4555666666666666666 5566666666


Q ss_pred             HhCCC
Q 043144          563 CSRGV  567 (580)
Q Consensus       563 ~~~g~  567 (580)
                      .+..+
T Consensus       830 ~~~~~  834 (899)
T TIGR02917       830 LKLAP  834 (899)
T ss_pred             HhhCC
Confidence            65543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=2.6e-25  Score=244.92  Aligned_cols=467  Identities=14%  Similarity=0.061  Sum_probs=266.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDII-PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      ..+.+.+.+.|++++|++.|+.++... +|+.. ............|+.++|++.++++.+.. |.+...+..+...+..
T Consensus       116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~  193 (1157)
T PRK11447        116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFS  193 (1157)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHc
Confidence            445566777777777777777776552 33321 11111122234577777777777777665 5566667777777777


Q ss_pred             cCChhHHHHHHHHc-CCCC----------------------------------Ccch---------------------HH
Q 043144          167 LGEIDNALQVLERM-SVAP----------------------------------DVVT---------------------YN  190 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~~~----------------------------------~~~~---------------------~~  190 (580)
                      .|++++|+..++++ ..++                                  +...                     ..
T Consensus       194 ~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~  273 (1157)
T PRK11447        194 SGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRAR  273 (1157)
T ss_pred             cCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHH
Confidence            77777777777665 1110                                  0000                     00


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHH---------
Q 043144          191 TILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYN---------  260 (580)
Q Consensus       191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~---------  260 (580)
                      ..+..+...|++++|+..|++.++.. +.+...+..+...+.+.|++++|+..|++..+..... ....|.         
T Consensus       274 ~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        274 AQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            12344556677777777777777654 2356667777777777777777777777777653221 111111         


Q ss_pred             ---HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH--
Q 043144          261 ---VLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF--  335 (580)
Q Consensus       261 ---~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--  335 (580)
                         .....+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+++++.. +.+...+..+...  
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~  430 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR  430 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence               12345566777777777777777653 3455566667777777777777777777777653 2233333333333  


Q ss_pred             ----------------------------------------HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043144          336 ----------------------------------------LCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK  375 (580)
Q Consensus       336 ----------------------------------------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  375 (580)
                                                              +...|++++|++.|++.++..+. +...+..+...|.+.|
T Consensus       431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G  509 (1157)
T PRK11447        431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAG  509 (1157)
T ss_pred             hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence                                                    33445555555555555544222 3344444555555555


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHhCCC
Q 043144          376 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI---------TYNTVIDGLSKVGK  446 (580)
Q Consensus       376 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~  446 (580)
                      ++++|...++++.+..+. +...+..+...+...++.++|...++.+......++..         .+......+...|+
T Consensus       510 ~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        510 QRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            555555555555443211 22222222223334444444444444332211111100         01122334445555


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILAD  526 (580)
Q Consensus       447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  526 (580)
                      .++|..+++.     .+.+...+..+...+.+.|++++|+..|+++.+..+. +...+..++.+|...|++++|++.++.
T Consensus       589 ~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        589 EAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5555555541     1334555666777777778888888888777766544 566777777777777888888877777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          527 MVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       527 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      +.+.. +.+...+..++.++...|++++|.++++++......
T Consensus       663 ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        663 LPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence            66542 345566667777777778888888888777765443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.96  E-value=2.4e-24  Score=237.36  Aligned_cols=467  Identities=14%  Similarity=0.091  Sum_probs=343.5

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC------------------CCh-hhHH----------------------
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDI------------------PDI-IPCT----------------------  123 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------------~~~-~~~~----------------------  123 (580)
                      ..+..+...+...|++++|+..++++......                  ++. ..+.                      
T Consensus       182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~  261 (1157)
T PRK11447        182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ  261 (1157)
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            35677888889999999999999998654210                  010 0010                      


Q ss_pred             ------------HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcc---
Q 043144          124 ------------SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVV---  187 (580)
Q Consensus       124 ------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~---  187 (580)
                                  .....+...|++++|...|++..+.. |.+...+..++.+|.+.|++++|+..|++. ...|+..   
T Consensus       262 ~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~  340 (1157)
T PRK11447        262 QKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD  340 (1157)
T ss_pred             HHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh
Confidence                        11334566788888888888887765 557777888888888888888888888876 3233321   


Q ss_pred             hH------------HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 043144          188 TY------------NTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD  255 (580)
Q Consensus       188 ~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  255 (580)
                      .|            ......+.+.|++++|+..|++++... +.+...+..+...+...|++++|++.|+++.+... .+
T Consensus       341 ~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~  418 (1157)
T PRK11447        341 KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GN  418 (1157)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CC
Confidence            12            122445667888888888888888764 23556667777888888888888888888877632 24


Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChh
Q 043144          256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ--------PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVV  327 (580)
Q Consensus       256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  327 (580)
                      ...+..+...|. .++.++|+.+++.+......        .....+..+...+...|++++|.+.|+++++.. +.+..
T Consensus       419 ~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~  496 (1157)
T PRK11447        419 TNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVW  496 (1157)
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence            556666666664 45678888777765432100        011234456667888999999999999999874 44567


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---------H
Q 043144          328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV---------T  398 (580)
Q Consensus       328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---------~  398 (580)
                      .+..+...|.+.|++++|...++++.+..+. ++..+..+...+...++.++|+..++.+......++..         .
T Consensus       497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~  575 (1157)
T PRK11447        497 LTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQ  575 (1157)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhH
Confidence            7888999999999999999999999876433 55556566666778899999999998865432222221         2


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144          399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR  478 (580)
Q Consensus       399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  478 (580)
                      +..+...+...|+.++|..+++.     .+.+...+..+...+.+.|++++|+..|++.++.. +.+...+..++..+..
T Consensus       576 ~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~  649 (1157)
T PRK11447        576 VLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIA  649 (1157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            23456778899999999999872     24556677889999999999999999999999874 4467889999999999


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CC---CHHHHHHHHHHHHhcCCHH
Q 043144          479 EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC--KP---TEATYTILIEGIAYEGLAK  553 (580)
Q Consensus       479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~---~~~~~~~l~~~~~~~g~~~  553 (580)
                      .|++++|+..++.+.+..+. +...+..+..++...|++++|.+++++++...-  +|   +...+..++..+...|+++
T Consensus       650 ~g~~~eA~~~l~~ll~~~p~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~  728 (1157)
T PRK11447        650 QGDLAAARAQLAKLPATAND-SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQ  728 (1157)
T ss_pred             CCCHHHHHHHHHHHhccCCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence            99999999999998875433 566777888999999999999999999986531  12   2246667788999999999


Q ss_pred             HHHHHHHHHHh
Q 043144          554 EALDLLNQLCS  564 (580)
Q Consensus       554 ~A~~~~~~~~~  564 (580)
                      +|.+.++++..
T Consensus       729 ~A~~~y~~Al~  739 (1157)
T PRK11447        729 QALETYKDAMV  739 (1157)
T ss_pred             HHHHHHHHHHh
Confidence            99999999974

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.95  E-value=5.3e-24  Score=199.06  Aligned_cols=445  Identities=15%  Similarity=0.126  Sum_probs=360.9

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      ...++.....+.|++.+|.+.....-+. .+.+....-.+-..+.+..+.+....--....+.. +.-..+|..+...+-
T Consensus        50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~-d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   50 DRLELAHRLYQGGDYKQAEKHCNMVGQE-DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILK  127 (966)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHhHhhcc-CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHH
Confidence            3577888899999999999988877655 23333333334445566666665544333333333 566789999999999


Q ss_pred             hcCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCCHhHHHH
Q 043144          166 RLGEIDNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY-TILIEATCKESGVGQAMK  242 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~  242 (580)
                      ..|++++|+.+++.+ ...| ....|..+..++...|+.+.|.+.|.+.++.+  |+.... +.+....-..|++++|..
T Consensus       128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence            999999999999998 4444 57789999999999999999999999999865  654433 334455566899999999


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      .|.+.++... -=.+.|..|...+..+|+.-.|+..|++..+.+ +.-...|..+...|...+.+++|...|..+.... 
T Consensus       206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-  282 (966)
T KOG4626|consen  206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-  282 (966)
T ss_pred             HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-
Confidence            9999887632 135679999999999999999999999998764 3335788899999999999999999999988763 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-IVTYNT  401 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~  401 (580)
                      +.....+..+...|...|.+|-|+..+++.++..+. -+..|+.|..++-..|++.+|.+.|.+.+..  .|+ ....+.
T Consensus       283 pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~N  359 (966)
T KOG4626|consen  283 PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNN  359 (966)
T ss_pred             CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHH
Confidence            445678888889999999999999999999987433 5678999999999999999999999999986  344 458899


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCC
Q 043144          402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREG  480 (580)
Q Consensus       402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g  480 (580)
                      |...|...|.+++|..+|....+.. +.-...++.+...|-+.|++++|+..+++.+..  .|+ ...|+.+...|...|
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence            9999999999999999999988765 223567899999999999999999999999864  565 568999999999999


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT-EATYTILIEGI  546 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  546 (580)
                      +++.|.+.+.+++..++. -....+.|...|-..|+..+|+.-+++.++.  +|| +..+-.++.+.
T Consensus       437 ~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLHCL  500 (966)
T ss_pred             hHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHHHH
Confidence            999999999999986533 3567889999999999999999999999975  555 55666666554

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=5.3e-23  Score=202.37  Aligned_cols=470  Identities=13%  Similarity=0.094  Sum_probs=367.3

Q ss_pred             ceeeeeccccccccCcchhhhhhcccccccccccccccchhhchhhHHhhhcccCCCccccccccCCCCCcccHHHHHHH
Q 043144           14 VSFSVQSADSVDFKKHKGFQKQRQNRVFAISKVETLSFNVKMKHGEAFVQGHLNNGHISSGMENSSLNFEDFESNNHLRR   93 (580)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   93 (580)
                      +..-++.++++.+.+|+.+++..++++|+.+.....++..++.|........+                  -.|..+.++
T Consensus       255 ~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~a------------------es~Y~~gRs  316 (1018)
T KOG2002|consen  255 GVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKA------------------ESFYQLGRS  316 (1018)
T ss_pred             HHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHH------------------HHHHHHHHH
Confidence            33446778888889999999999999998888877766666666553322211                  367889999


Q ss_pred             HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----C
Q 043144           94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG----E  169 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~  169 (580)
                      |+..|+++.|..+|.+............+..++..|.+.|+.+.+...|+.+.+.. |.+..+...|+..|...+    .
T Consensus       317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~  395 (1018)
T KOG2002|consen  317 YHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEK  395 (1018)
T ss_pred             HHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHH
Confidence            99999999999999999887433335667788999999999999999999999876 778889999999998875    5


Q ss_pred             hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144          170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL----EKECYPDVITYTILIEATCKESGVGQAMKL  243 (580)
Q Consensus       170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  243 (580)
                      .++|..++.+.  ..+.|...|-.+...+.+..-+.. +.+|..+.    ..+-++.....|.+...+...|+++.|...
T Consensus       396 ~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~  474 (1018)
T KOG2002|consen  396 RDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEH  474 (1018)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHH
Confidence            67788888877  456678899999888887665554 77766654    344457788899999999999999999999


Q ss_pred             HHHHHHc---CCCCCH------hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHH
Q 043144          244 LDEMRNK---GCIPDV------VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERL  313 (580)
Q Consensus       244 ~~~~~~~---~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~  313 (580)
                      |+.....   ...+|.      .+-..+...+-..++.+.|.+.|..+.+.  .|+-+ .|.-++......+...+|..+
T Consensus       475 f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~  552 (1018)
T KOG2002|consen  475 FKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLL  552 (1018)
T ss_pred             HHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHH
Confidence            9998765   122222      23334667777888999999999999886  45543 344444444456889999999


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHh------------cCCHHHH
Q 043144          314 LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG-CTPNSLSYNPVLHGFCK------------EKKMDRA  380 (580)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~A  380 (580)
                      +..+...+ ..++..+..+...+.+...+..|.+-|..+.+.- ..+|+.+.-.|.+.|.+            .+..++|
T Consensus       553 lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA  631 (1018)
T KOG2002|consen  553 LKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA  631 (1018)
T ss_pred             HHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence            99998764 4577788888889999999999999777766542 22577777777776653            3457889


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144          381 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK  460 (580)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  460 (580)
                      +++|.++++..+. +.+.-+.+.-.++..|++++|..+|.+..+... ....+|..+..+|...|++..|+++|+...+.
T Consensus       632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk  709 (1018)
T KOG2002|consen  632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKK  709 (1018)
T ss_pred             HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999987554 778889999999999999999999999998652 35678899999999999999999999997765


Q ss_pred             -CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          461 -GLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       461 -~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                       ...-+..+...|..++.+.|.+.+|.+.+..+....+......||..+
T Consensus       710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~  758 (1018)
T KOG2002|consen  710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLAL  758 (1018)
T ss_pred             hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHH
Confidence             444578899999999999999999999999998776664555555443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.94  E-value=2.5e-23  Score=194.64  Aligned_cols=441  Identities=16%  Similarity=0.118  Sum_probs=363.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 043144          122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDS  199 (580)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~  199 (580)
                      ...+..-..+.|++.+|.+.-..+-..+ +.+......+...+.+..+.+....--...  ..+.-..+|..+...+-..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            4566777889999999999877665554 444445555667777777777665443333  3344577899999999999


Q ss_pred             CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHhcCCHHHHHHH
Q 043144          200 GKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY-NVLVNGICKEGRLDEAIKF  278 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~  278 (580)
                      |++++|+.+|+.+++.. +..+..|..+..++...|+.+.|.+.|.+.++.  .|+.... ..+.......|++++|...
T Consensus       130 g~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             chHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            99999999999999875 336789999999999999999999999999886  4554443 3455556678999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144          279 LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT  358 (580)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  358 (580)
                      |.+..+.. +--...|..+...+-..|+...|++.|+++.+.+ +.-...|..|...|...+.++.|...+.+.....+.
T Consensus       207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn  284 (966)
T KOG4626|consen  207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN  284 (966)
T ss_pred             HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence            99987753 3345789999999999999999999999998864 223568889999999999999999999998876332


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144          359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTV  437 (580)
Q Consensus       359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  437 (580)
                       ....+..+...|...|+.|-|+..|++.++.  .|+ ...|+.|..++-..|++.+|.+.+....... +.-....+.+
T Consensus       285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL  360 (966)
T KOG4626|consen  285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL  360 (966)
T ss_pred             -chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence             5667888888899999999999999999986  444 4589999999999999999999999998876 3336778899


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 043144          438 IDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN-VITYNSIMLGLCKAR  515 (580)
Q Consensus       438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g  515 (580)
                      ..+|...|.+++|..+|....+-  .|. ....+.|...|.+.|++++|+..++++.+.  .|+ ...|+.+...|-..|
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhh
Confidence            99999999999999999998874  344 557899999999999999999999999874  565 568999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHHH
Q 043144          516 QTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQVA  577 (580)
Q Consensus       516 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~~  577 (580)
                      +.+.|+..+.+++.-+ |.-...+..|+.+|..+|+..+|+.-+++..+..++.++....++
T Consensus       437 ~v~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNll  497 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLL  497 (966)
T ss_pred             hHHHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHH
Confidence            9999999999998653 333678899999999999999999999999999988887776654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=2.2e-21  Score=204.23  Aligned_cols=462  Identities=11%  Similarity=0.004  Sum_probs=284.5

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG-  163 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-  163 (580)
                      ..+..+.+.|...|++++|+..+++++.. .|.|...+..+..    .+++++|..+++++.... |.+..++..+... 
T Consensus        79 ~~~~~LA~~yl~~g~~~~A~~~~~kAv~l-dP~n~~~~~~La~----i~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~  152 (987)
T PRK09782         79 PLTLYLAEAYRHFGHDDRARLLLEDQLKR-HPGDARLERSLAA----IPVEVKSVTTVEELLAQQ-KACDAVPTLRCRSE  152 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CcccHHHHHHHHH----hccChhHHHHHHHHHHhC-CCChhHHHHHHHHh
Confidence            35566777777777777777777777765 3344444443322    177777777777777765 4445555555554 


Q ss_pred             -------HHhcCChhHHHHHHHHcCCCCCcchHHH-HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-c
Q 043144          164 -------YCRLGEIDNALQVLERMSVAPDVVTYNT-ILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK-E  234 (580)
Q Consensus       164 -------~~~~g~~~~A~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~  234 (580)
                             |.+.++..++++ .+.....|+..+... +.+.|.+.|++++|++++.++.+.+. .+......+...|.. .
T Consensus       153 ~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l  230 (987)
T PRK09782        153 VGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQ  230 (987)
T ss_pred             hccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhh
Confidence                   666655555655 222232233433333 37777777777777777777777652 234445555556665 3


Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCHHHH-------------------
Q 043144          235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ-PNVITH-------------------  294 (580)
Q Consensus       235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-------------------  294 (580)
                      ++ +++..+++..    +..++..+..++..|.+.|+.++|..++.++...... |...+|                   
T Consensus       231 ~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~  305 (987)
T PRK09782        231 LD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYT  305 (987)
T ss_pred             CH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchh
Confidence            55 5565554431    2235666667777777777777777666664322100 111110                   


Q ss_pred             --------------------------------------------------------------------------HHHHHH
Q 043144          295 --------------------------------------------------------------------------NIILRS  300 (580)
Q Consensus       295 --------------------------------------------------------------------------~~ll~~  300 (580)
                                                                                                ..+...
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~  385 (987)
T PRK09782        306 VQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQ  385 (987)
T ss_pred             hhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence                                                                                      000111


Q ss_pred             HHhcCChHHHHHHHHHHHHc-C-CCC------------------------------------------------------
Q 043144          301 MCSTGRWMDAERLLAEMVLK-G-CSP------------------------------------------------------  324 (580)
Q Consensus       301 ~~~~~~~~~a~~~~~~~~~~-~-~~~------------------------------------------------------  324 (580)
                      ..+.|+.++|.++++..... + ...                                                      
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            22334455555555544331 0 001                                                      


Q ss_pred             ----------ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043144          325 ----------SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP  394 (580)
Q Consensus       325 ----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  394 (580)
                                +...+..+..++.. ++.++|...+.+....  .|+......+...+...|++++|...|+++...  .|
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence                      12222233333332 3444555555544443  233322222334445677788888887776544  33


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG  474 (580)
Q Consensus       395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  474 (580)
                      +...+..+..++.+.|++++|...+++..+.. ++....+..+.......|++++|...+++.++.  .|+...+..+..
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~  617 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT  617 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            44445566667777888888888888877655 222333333334444568889999998888865  467788888888


Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKE  554 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  554 (580)
                      ++.+.|++++|...++++....+. +...+..+..++...|++++|+..++++++.. |.+...+..++.++...|++++
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~e  695 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAA  695 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999887654 67788888888999999999999999988763 6678888999999999999999


Q ss_pred             HHHHHHHHHhCCCCC
Q 043144          555 ALDLLNQLCSRGVVK  569 (580)
Q Consensus       555 A~~~~~~~~~~g~~~  569 (580)
                      |...++++++..+..
T Consensus       696 A~~~l~~Al~l~P~~  710 (987)
T PRK09782        696 TQHYARLVIDDIDNQ  710 (987)
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999998876543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=4.2e-21  Score=198.92  Aligned_cols=428  Identities=12%  Similarity=0.046  Sum_probs=238.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      +......+.+.|++++|+..|++++..  .|+...|..+..+|.+.|++++|+..++..++.. |.+...|..++.+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            345566677777777777777777664  3455566667777777777777777777777665 4456667777777777


Q ss_pred             cCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          167 LGEIDNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      .|++++|+..|..+ ..++ +......++..+..    ..+.......++.. +++...+..+.. +...........-+
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  280 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL  280 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence            77777777666554 1111 11111111111111    12222222222221 122222222222 21111111111112


Q ss_pred             HHHHHcCCCCC-HhHHHHHHHHH---HhcCCHHHHHHHHHHhhhCC-C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144          245 DEMRNKGCIPD-VVTYNVLVNGI---CKEGRLDEAIKFLNDMPSYG-C-QPNVITHNIILRSMCSTGRWMDAERLLAEMV  318 (580)
Q Consensus       245 ~~~~~~~~~~~-~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~-~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  318 (580)
                      ....+.  .++ ...+..+...+   ...+++++|.+.|++..+.+ . +.....|..+...+...|++++|...++..+
T Consensus       281 ~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal  358 (615)
T TIGR00990       281 EDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSI  358 (615)
T ss_pred             hccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            111111  111 01111111111   12356777777777766543 1 2234456666666667777777777777776


Q ss_pred             HcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 043144          319 LKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVT  398 (580)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  398 (580)
                      +.. +.....|..+...+...|++++|...|+++++.... +...|..+...+...|++++|+..|++.++..+. +...
T Consensus       359 ~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~  435 (615)
T TIGR00990       359 ELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFS  435 (615)
T ss_pred             HcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHH
Confidence            653 223456666677777777777777777777665332 5566677777777777777777777777665322 3446


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH------HHHHH
Q 043144          399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI------TYSSL  472 (580)
Q Consensus       399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------~~~~l  472 (580)
                      +..+..++.+.|++++|...|++..+.. +.+...|+.+...+...|++++|.+.|++.+......+..      .++..
T Consensus       436 ~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a  514 (615)
T TIGR00990       436 HIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA  514 (615)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence            6666677777777777777777766543 3345666677777777777777777777766542111111      11111


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +..+...|++++|..+++++.+..+. +...+..++.++...|++++|++.|+++.+.
T Consensus       515 ~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       515 LALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            22233357777777777776665433 4455666777777777777777777776654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.93  E-value=6.6e-21  Score=197.49  Aligned_cols=431  Identities=14%  Similarity=0.058  Sum_probs=315.2

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHh
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAP-DVVTYNTILRTLCD  198 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~  198 (580)
                      .+...+..+.+.|++++|+..|++.+..  .|++..|..+..+|...|++++|++.++++ ...| +..+|..+..+|..
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4556778899999999999999999876  467888999999999999999999999998 4444 56789999999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144          199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF  278 (580)
Q Consensus       199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  278 (580)
                      .|++++|+..|..+...+...+. ....++..+..    ..+........+.. +++...+..+.. |...........-
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~  279 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG  279 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence            99999999988776654322222 12222222222    22333333333332 223333333333 2222222222222


Q ss_pred             HHHhhhCCCCCCH-HHHHHHHHH---HHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          279 LNDMPSYGCQPNV-ITHNIILRS---MCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       279 ~~~~~~~~~~~~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                      +....+.  .+.. ..+..+...   ....+++++|.+.|+.+++.+  .+.....+..+...+...|++++|+..+++.
T Consensus       280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka  357 (615)
T TIGR00990       280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS  357 (615)
T ss_pred             hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3222221  1111 111111111   134578999999999999864  2334567888889999999999999999999


Q ss_pred             hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144          353 PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI  432 (580)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  432 (580)
                      ++..+. +...|..+...+...|++++|+..|+++++..+. +..++..+...+...|++++|...|++..+.. +.+..
T Consensus       358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~  434 (615)
T TIGR00990       358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF  434 (615)
T ss_pred             HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence            887432 4667888899999999999999999999886433 56789999999999999999999999999876 34567


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH------HHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVI------TYNS  506 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~  506 (580)
                      .+..+..++.+.|++++|+..|++.+... +.+...++.+...+...|++++|...|+++.+..+..+..      .++.
T Consensus       435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~  513 (615)
T TIGR00990       435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK  513 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence            78888999999999999999999998753 4467889999999999999999999999998765432111      1222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          507 IMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       507 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ....+...|++++|.+++++++... +.+...+..++.++.+.|++++|.++++++.+...
T Consensus       514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~  573 (615)
T TIGR00990       514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR  573 (615)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence            2333445799999999999998764 55566889999999999999999999999987643

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.92  E-value=3.2e-19  Score=188.15  Aligned_cols=454  Identities=12%  Similarity=0.060  Sum_probs=313.1

Q ss_pred             HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043144           92 RRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEID  171 (580)
Q Consensus        92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  171 (580)
                      ..+...|++++|+..|+++++. .|.+..++..++..|.+.|++++|+..+++..+.. |.|...+..+..    .++++
T Consensus        52 ~~~~~~Gd~~~A~~~l~~Al~~-dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~La~----i~~~~  125 (987)
T PRK09782         52 LKAQKNNDEATAIREFEYIHQQ-VPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSLAA----IPVEV  125 (987)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHHHH----hccCh
Confidence            3444559999999999999987 45568889999999999999999999999999886 455555555422    28999


Q ss_pred             HHHHHHHHc--CCCCCcchHHHHHHH--------HHhcCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCCHhHH
Q 043144          172 NALQVLERM--SVAPDVVTYNTILRT--------LCDSGKLNLAMEVLHKQLEKECYPDVITYTIL-IEATCKESGVGQA  240 (580)
Q Consensus       172 ~A~~~~~~~--~~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A  240 (580)
                      +|..+++++  ..|.+..++..+...        |.+.++..+++   + .......|+..+.... ...|.+.|++++|
T Consensus       126 kA~~~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A  201 (987)
T PRK09782        126 KSVTTVEELLAQQKACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQA  201 (987)
T ss_pred             hHHHHHHHHHHhCCCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence            999999999  333445566666665        66665444444   4 2332333445544444 8999999999999


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144          241 MKLLDEMRNKGCIPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  319 (580)
                      +.++.++.+.+.. +......|..+|.. .++ +++..++..    .+..+...+..++..+.+.|+.++|.++++++..
T Consensus       202 i~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~  275 (987)
T PRK09782        202 DTLYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKP  275 (987)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence            9999999998643 56667778888888 477 888888654    2246888899999999999999999988887643


Q ss_pred             cCCC-CChhhH------------------------------HHHHHHH--------------------------------
Q 043144          320 KGCS-PSVVTF------------------------------NILINFL--------------------------------  336 (580)
Q Consensus       320 ~~~~-~~~~~~------------------------------~~l~~~~--------------------------------  336 (580)
                      .... |+..+|                              ..++..+                                
T Consensus       276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~  355 (987)
T PRK09782        276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVAT  355 (987)
T ss_pred             cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhcccc
Confidence            2110 111111                              0001111                                


Q ss_pred             -------------------------------HhcCCHHHHHHHHHHhhhC-C-C--------------------------
Q 043144          337 -------------------------------CRKGLLGRAIDILEKMPKH-G-C--------------------------  357 (580)
Q Consensus       337 -------------------------------~~~g~~~~a~~~~~~~~~~-~-~--------------------------  357 (580)
                                                     .+.|+.++|.++|+..... + .                          
T Consensus       356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  435 (987)
T PRK09782        356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV  435 (987)
T ss_pred             CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence                                           2234445555555444331 0 0                          


Q ss_pred             ------------------------------------CC--CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043144          358 ------------------------------------TP--NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTY  399 (580)
Q Consensus       358 ------------------------------------~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  399 (580)
                                                          ++  +...|..+..++.. ++.++|+..+.+....  .|+....
T Consensus       436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~  512 (987)
T PRK09782        436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH  512 (987)
T ss_pred             HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence                                                00  12223333333333 4555666666655554  3554444


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      ..+...+...|++++|...|+++...  +|+...+..+..++.+.|++++|...+++.++.. +++...+..+.......
T Consensus       513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~  589 (987)
T PRK09782        513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence            44455556788888888888887554  2444455666777788888888888888887764 22333444444455567


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144          480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLL  559 (580)
Q Consensus       480 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  559 (580)
                      |++++|...++++.+..  |+...|..+..++.+.|++++|+..+++.+... |.+...+..++.++...|++++|++.+
T Consensus       590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999988764  467788888899999999999999999998774 666778888888999999999999999


Q ss_pred             HHHHhCCCCCc
Q 043144          560 NQLCSRGVVKK  570 (580)
Q Consensus       560 ~~~~~~g~~~~  570 (580)
                      +++.+..+...
T Consensus       667 ~~AL~l~P~~~  677 (987)
T PRK09782        667 ERAHKGLPDDP  677 (987)
T ss_pred             HHHHHhCCCCH
Confidence            99988765444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=3.5e-20  Score=191.25  Aligned_cols=331  Identities=13%  Similarity=0.042  Sum_probs=275.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      ....+..+.+.|++++|+.+++..+.. .+.+...+..++.++...|++++|...|+++.... |.+...+..++..+..
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~-~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~  122 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLT-AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLK  122 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHh-CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence            445678899999999999999999887 45556677777888889999999999999999887 6778889999999999


Q ss_pred             cCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          167 LGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      .|++++|+..++++ .. +.+...+..++..+...|++++|...++.+...... +...+..+ ..+...|++++|...+
T Consensus       123 ~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~  200 (656)
T PRK15174        123 SKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLA  200 (656)
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHH
Confidence            99999999999998 43 445778899999999999999999999988776533 23333333 3478899999999999


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHHc
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMD----AERLLAEMVLK  320 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~  320 (580)
                      +.+.+....++...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++    |...|+.+.+.
T Consensus       201 ~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l  279 (656)
T PRK15174        201 RALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF  279 (656)
T ss_pred             HHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh
Confidence            998876433444555666778899999999999999998765 5567788889999999999986    89999999887


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH
Q 043144          321 GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-VTY  399 (580)
Q Consensus       321 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~  399 (580)
                      . +.+...+..+...+...|++++|...+++..+..+. +...+..+...+.+.|++++|+..|+++...+  |+. ..+
T Consensus       280 ~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~  355 (656)
T PRK15174        280 N-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWN  355 (656)
T ss_pred             C-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHH
Confidence            4 456778999999999999999999999999987544 56678888899999999999999999998763  443 344


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144          400 NTLLTALCKDGKVDVAVEILNQLSNKH  426 (580)
Q Consensus       400 ~~li~~~~~~g~~~~A~~~~~~~~~~~  426 (580)
                      ..+..++...|+.++|...|++..+..
T Consensus       356 ~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        356 RYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            456778899999999999999988765

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=1.9e-19  Score=189.91  Aligned_cols=412  Identities=12%  Similarity=0.054  Sum_probs=236.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHh
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCD  198 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~  198 (580)
                      ...-.+......|+.++|++++....... +.+...+..+..++...|++++|.++|++. .. |.+...+..++.++..
T Consensus        17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~   95 (765)
T PRK10049         17 QIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD   95 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            33344445566666666666666665532 444445666666666666666666666665 22 3344555666666666


Q ss_pred             cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144          199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF  278 (580)
Q Consensus       199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  278 (580)
                      .|++++|+..++++++.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..++..+...|..++|+..
T Consensus        96 ~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~  172 (765)
T PRK10049         96 AGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGA  172 (765)
T ss_pred             CCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHH
Confidence            666666666666666653 22334 666666666667777777777766665322 444555566666666666667766


Q ss_pred             HHHhhhCCCCCCH------HHHHHHHHHHH-----hcCCh---HHHHHHHHHHHHc-CCCCChh-hHH----HHHHHHHh
Q 043144          279 LNDMPSYGCQPNV------ITHNIILRSMC-----STGRW---MDAERLLAEMVLK-GCSPSVV-TFN----ILINFLCR  338 (580)
Q Consensus       279 ~~~~~~~~~~~~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l~~~~~~  338 (580)
                      ++....   .|+.      ......+....     ..+++   ++|+..++.+.+. ...|+.. .+.    ..+..+..
T Consensus       173 l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~  249 (765)
T PRK10049        173 IDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLA  249 (765)
T ss_pred             HHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHH
Confidence            665543   1221      01111122111     11223   5566666666643 1122211 110    11223345


Q ss_pred             cCCHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChHH
Q 043144          339 KGLLGRAIDILEKMPKHGCT-PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP---DIVTYNTLLTALCKDGKVDV  414 (580)
Q Consensus       339 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~  414 (580)
                      .|++++|+..|+++.+.+.+ |+. ....+...|...|++++|+..|+++.+.....   .......+..++...|++++
T Consensus       250 ~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e  328 (765)
T PRK10049        250 RDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG  328 (765)
T ss_pred             hhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence            57777777777777765422 221 12224566777777777777777766543211   12344555556677777777


Q ss_pred             HHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043144          415 AVEILNQLSNKHC-----------SPV---LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG  480 (580)
Q Consensus       415 A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  480 (580)
                      |...++.+.....           .|+   ...+..+...+...|++++|+++++++.... +.+...+..++..+...|
T Consensus       329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g  407 (765)
T PRK10049        329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARG  407 (765)
T ss_pred             HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence            7777777765431           122   1234455666777777777777777776653 445666777777777777


Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      ++++|++.++++....+. +...+..++..+...|++++|..+++++++.  .|+......+-+
T Consensus       408 ~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~  468 (765)
T PRK10049        408 WPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLAR  468 (765)
T ss_pred             CHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            777777777777765433 4556666666777777777777777777765  444443333333

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=3.6e-21  Score=189.62  Aligned_cols=299  Identities=18%  Similarity=0.161  Sum_probs=161.7

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC---hhhHHHHHHHHHhcCCHH
Q 043144          267 CKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS---VVTFNILINFLCRKGLLG  343 (580)
Q Consensus       267 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~  343 (580)
                      ...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+...+..++   ...+..++..|...|+++
T Consensus        46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34445555555555554432 22333444444445555555555555554444321111   123444555555555555


Q ss_pred             HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHH
Q 043144          344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI----VTYNTLLTALCKDGKVDVAVEIL  419 (580)
Q Consensus       344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~  419 (580)
                      +|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+..    ..+..+...+.+.|++++|...|
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            5555555555432 224445555555555566666666666555544322211    12344555556666666666666


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144          420 NQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP  499 (580)
Q Consensus       420 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  499 (580)
                      +++.+.. +.+...+..+...+.+.|++++|.++|+++...+......++..++.+|...|++++|...++++.+..  |
T Consensus       204 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p  280 (389)
T PRK11788        204 KKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--P  280 (389)
T ss_pred             HHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C
Confidence            6665543 223445555666666666666666666666654322223455666666666677777777766666543  3


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCchh
Q 043144          500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY---EGLAKEALDLLNQLCSRGVVKKSS  572 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~g~~~~~~  572 (580)
                      +...+..++..+.+.|++++|..+++++++.  .|+...+..++..+..   .|+.+++..+++++.++++.++|.
T Consensus       281 ~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        281 GADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            3344466666666677777777777666654  4555566655555443   446666777777666666655543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.91  E-value=4e-20  Score=182.34  Aligned_cols=479  Identities=13%  Similarity=0.089  Sum_probs=365.7

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDI--PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL  160 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  160 (580)
                      ++...+.|.+.|.-.|++..+..+...++.....  .-...|..++++|-.+|++++|..+|-...+.....-+..+..|
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl  348 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL  348 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence            4567888889999999999999999999876321  22346889999999999999999999998877522224556678


Q ss_pred             HHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcC----ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043144          161 ISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSG----KLNLAMEVLHKQLEKECYPDVITYTILIEATCKE  234 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  234 (580)
                      ++.|...|+++.+...|+++  ..|.+..+...|+..|...+    ..+.|..++.+..+.. +.|...|..+...+...
T Consensus       349 gQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~  427 (1018)
T KOG2002|consen  349 GQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT  427 (1018)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc
Confidence            99999999999999999998  55556778888888888775    5677888888777754 44777888887777655


Q ss_pred             CCHhHHHHHHHHHH----HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCC------CHHHHHHHHHHH
Q 043144          235 SGVGQAMKLLDEMR----NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY---GCQP------NVITHNIILRSM  301 (580)
Q Consensus       235 g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~------~~~~~~~ll~~~  301 (580)
                      ..+.. +..|..+.    ..+-.+.+...|.+...+...|.+++|...|......   ...+      +..+-..+...+
T Consensus       428 d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~  506 (1018)
T KOG2002|consen  428 DPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL  506 (1018)
T ss_pred             ChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH
Confidence            44433 66666544    3444567889999999999999999999999987653   1122      222344566677


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144          302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI  381 (580)
Q Consensus       302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  381 (580)
                      -..++++.|.+.|..+++.. +.-+..|.-++.+....++..+|...+..+...+- .++..++.+...+.....+..|.
T Consensus       507 E~l~~~~~A~e~Yk~Ilkeh-p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~  584 (1018)
T KOG2002|consen  507 EELHDTEVAEEMYKSILKEH-PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAK  584 (1018)
T ss_pred             HhhhhhhHHHHHHHHHHHHC-chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccc
Confidence            77889999999999999873 33334555555455556888999999999887643 37788888888999999999999


Q ss_pred             HHHHHHHHCC-CCCCHHHHHHHHHHHHh------------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 043144          382 EYLEIMVSRG-CYPDIVTYNTLLTALCK------------DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE  448 (580)
Q Consensus       382 ~~~~~~~~~~-~~~~~~~~~~li~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  448 (580)
                      .-|+...+.- ..+|.++..+|...|.+            .+..++|+++|.++...+ +.|...-|.+.-.++..|++.
T Consensus       585 k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~  663 (1018)
T KOG2002|consen  585 KKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFS  663 (1018)
T ss_pred             cHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCch
Confidence            8777776542 23678888777776543            345788999999988876 556777788888999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-RLGVRPNVITYNSIMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      +|..+|.+..+.. ..+..+|..+.++|...|++..|+++|+... +.....++.+.+.|..++...|++.+|.+.+..+
T Consensus       664 ~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a  742 (1018)
T KOG2002|consen  664 EARDIFSQVREAT-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKA  742 (1018)
T ss_pred             HHHHHHHHHHHHH-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999998874 3356778899999999999999999999975 4455667889999999999999999999999888


Q ss_pred             HHcCCCCCHH-HHHHHHH------------------HHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          528 VTRSCKPTEA-TYTILIE------------------GIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       528 ~~~~~~~~~~-~~~~l~~------------------~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      .... +.+.. .|+..+.                  .....+..+.|.++|..+...+-.
T Consensus       743 ~~~~-p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  743 RHLA-PSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHhC-CccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            7653 33322 2222211                  123446788899999999887765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=4.9e-21  Score=188.68  Aligned_cols=59  Identities=17%  Similarity=0.145  Sum_probs=24.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144          260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  319 (580)
                      ..++..|.+.|++++|..+|+++.+.. +.+..++..++..+...|++++|.+.++.+.+
T Consensus       111 ~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  169 (389)
T PRK11788        111 QELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEK  169 (389)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Confidence            333444444444444444444443321 22333344444444444444444444444433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.91  E-value=1.2e-19  Score=187.22  Aligned_cols=358  Identities=11%  Similarity=0.038  Sum_probs=284.4

Q ss_pred             HHHcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043144           94 LVRNGELEEGFKFLESMVYH--GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEID  171 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  171 (580)
                      +.++.+++.---+|.+..+.  ....+..-...++..+.+.|++++|..+++.+.... +.+...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHH
Confidence            44555665544455444322  011223344556777899999999999999999876 556667777788888899999


Q ss_pred             HHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144          172 NALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN  249 (580)
Q Consensus       172 ~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  249 (580)
                      +|++.|+++ . .|.+...+..++..+.+.|++++|+..+++++... +.+...+..++..+...|++++|...++.+..
T Consensus        94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            999999998 3 34557789999999999999999999999999864 34577888899999999999999999998877


Q ss_pred             cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144          250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF  329 (580)
Q Consensus       250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  329 (580)
                      .... +...+..+ ..+...|++++|...++.+.+....++...+..+...+...|++++|...++.+.+.. +.+...+
T Consensus       173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~  249 (656)
T PRK15174        173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR  249 (656)
T ss_pred             hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence            6433 33344333 3478899999999999998776433444555566778899999999999999999875 4567788


Q ss_pred             HHHHHHHHhcCCHHH----HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          330 NILINFLCRKGLLGR----AIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA  405 (580)
Q Consensus       330 ~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  405 (580)
                      ..+...+...|++++    |...|+++.+..+. +...+..+...+...|++++|+..+++..+..+. +...+..+..+
T Consensus       250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~  327 (656)
T PRK15174        250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            889999999999986    89999999987543 6778999999999999999999999999987433 45577888999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144          406 LCKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMKLLEEMRTK  460 (580)
Q Consensus       406 ~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  460 (580)
                      +.+.|++++|...++.+...+  |+. ..+..+..++...|++++|...|++..+.
T Consensus       328 l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999998865  443 33444577889999999999999999876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.91  E-value=2.8e-19  Score=188.68  Aligned_cols=419  Identities=11%  Similarity=-0.011  Sum_probs=317.9

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC
Q 043144          140 RVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC  217 (580)
Q Consensus       140 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  217 (580)
                      ..++. ...+ +.++....-.+......|+.++|++++.+. . .+.+...+..+...+...|++++|.++|++.+... 
T Consensus         3 ~~~~~-~~~~-~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-   79 (765)
T PRK10049          3 SWLRQ-ALKS-ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-   79 (765)
T ss_pred             hhhhh-hhcc-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            44555 3233 555666666777888899999999999998 3 33445569999999999999999999999998874 


Q ss_pred             CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144          218 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII  297 (580)
Q Consensus       218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  297 (580)
                      +.+...+..++..+...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+
T Consensus        80 P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~l  156 (765)
T PRK10049         80 PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEY  156 (765)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            3456677888899999999999999999998874 33566 8889999999999999999999998874 4466667778


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHh-----cCCH---HHHHHHHHHhhhC-CCCCCHh
Q 043144          298 LRSMCSTGRWMDAERLLAEMVLKGCSPSV------VTFNILINFLCR-----KGLL---GRAIDILEKMPKH-GCTPNSL  362 (580)
Q Consensus       298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~-----~g~~---~~a~~~~~~~~~~-~~~~~~~  362 (580)
                      ..++...+..++|++.++.+..   .|+.      .....++.....     .+++   ++|+..++.+.+. ...|+..
T Consensus       157 a~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~  233 (765)
T PRK10049        157 VQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDAT  233 (765)
T ss_pred             HHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence            8888889999999998886654   1221      112222333221     2234   7788888888754 1222221


Q ss_pred             -hHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHH
Q 043144          363 -SYN----PVLHGFCKEKKMDRAIEYLEIMVSRGCY-PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP---VLIT  433 (580)
Q Consensus       363 -~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~  433 (580)
                       .+.    ..+..+...|++++|+..|+++.+.+.. |+. ....+..+|...|++++|...|+++.......   ....
T Consensus       234 ~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~  312 (765)
T PRK10049        234 ADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEE  312 (765)
T ss_pred             hHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHH
Confidence             111    1134456779999999999999887532 333 22335778999999999999999987654211   1345


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGL-----------KPD---TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP  499 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-----------~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  499 (580)
                      ...+..++...|++++|..+++.+.....           .|+   ...+..+...+...|++++|+.+++++....+. 
T Consensus       313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~-  391 (765)
T PRK10049        313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPG-  391 (765)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence            66677788999999999999999987521           123   234566778899999999999999999887654 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144          500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK  570 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  570 (580)
                      +...+..++..+...|++++|++.+++++... |.+...+..++..+...|++++|..+++++++..+..+
T Consensus       392 n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~  461 (765)
T PRK10049        392 NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDP  461 (765)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCH
Confidence            68889999999999999999999999999863 56678888888999999999999999999999765443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=6.2e-18  Score=174.80  Aligned_cols=431  Identities=13%  Similarity=0.096  Sum_probs=225.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDI-IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      +-...+.|+++.|+..|+++++.. |.+. .++ .++..+...|+.++|+..+++..... +........++..|...|+
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence            345567788888888888887652 2221 233 66777777788888888888777322 2233333444567777788


Q ss_pred             hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 043144          170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM  247 (580)
Q Consensus       170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  247 (580)
                      +++|+++|+++  ..|.+...+..++..+...++.++|++.++++....  |+...+..++..+...++..+|++.++++
T Consensus       118 yd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        118 WDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             HHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            88888888887  333445566677777788888888888888777654  45445544444444456665688888888


Q ss_pred             HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH--HHHHHHHhc---------CC---hHHHHHH
Q 043144          248 RNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHN--IILRSMCST---------GR---WMDAERL  313 (580)
Q Consensus       248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~---------~~---~~~a~~~  313 (580)
                      .+.. +.+...+..+..++.+.|-...|+++..+-+..- .+....+.  ..+.-..+.         .+   .+.|+.-
T Consensus       196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f-~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~  273 (822)
T PRK14574        196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV-SAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALAD  273 (822)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-CHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHH
Confidence            7764 2256666777777777887777777766543211 11111110  000001111         11   1223333


Q ss_pred             HHHHHHc-CCCCCh-hhH----HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          314 LAEMVLK-GCSPSV-VTF----NILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIM  387 (580)
Q Consensus       314 ~~~~~~~-~~~~~~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  387 (580)
                      ++.+... +..|.. ..|    .-.+-++...|+..++++.|+.+...+.+....+-..+..+|...+++++|..+|+.+
T Consensus       274 ~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~  353 (822)
T PRK14574        274 YQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSL  353 (822)
T ss_pred             HHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence            3333321 111111 111    1122334445555555555555555544333444555555555555555555555555


Q ss_pred             HHCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----------CCC---HHHHHHHHHHHHhCCCHH
Q 043144          388 VSRGC-----YPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC-----------SPV---LITYNTVIDGLSKVGKTE  448 (580)
Q Consensus       388 ~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~g~~~  448 (580)
                      .....     .++......|.-++...+++++|..+++.+.+...           .|+   ...+..++..+...|+..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~  433 (822)
T PRK14574        354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP  433 (822)
T ss_pred             hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence            43211     11222234455555555555555555555554211           011   112233344445555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      +|.+.++++.... +-|......+...+...|.+.+|++.++.+....+. +..+....+.++...+++++|..+.+.+.
T Consensus       434 ~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        434 TAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5555555554432 334455555555555555555555555444433222 34444445555555555555555555554


Q ss_pred             Hc
Q 043144          529 TR  530 (580)
Q Consensus       529 ~~  530 (580)
                      ..
T Consensus       512 ~~  513 (822)
T PRK14574        512 SR  513 (822)
T ss_pred             hh
Confidence            43

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.89  E-value=1.3e-17  Score=172.55  Aligned_cols=436  Identities=14%  Similarity=0.055  Sum_probs=329.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHcCCCC-CcchHHHH--HHHHHhcCC
Q 043144          126 IRGFCKVGKTRKATRVMEIVEDSGAVPD-VITYNVLISGYCRLGEIDNALQVLERMSVAP-DVVTYNTI--LRTLCDSGK  201 (580)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l--~~~~~~~g~  201 (580)
                      +....+.|+++.|+..|+++.+.. |.+ +..+ .++..+...|+.++|+..+++.- .| +...+..+  +..+...|+
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gd  117 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAG-PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKR  117 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCC
Confidence            334689999999999999999876 333 2344 88888889999999999999985 33 33334444  568888999


Q ss_pred             hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          202 LNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLND  281 (580)
Q Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  281 (580)
                      +++|+++|+++++..+. +...+..++..+...++.++|++.++.+...  .|+...+..++..+...++..+|++.+++
T Consensus       118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ek  194 (822)
T PRK14574        118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSE  194 (822)
T ss_pred             HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            99999999999998633 4667778888999999999999999999877  45555565555555556777679999999


Q ss_pred             hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH------HHHHHHH---H--hcC---CHHHHHH
Q 043144          282 MPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF------NILINFL---C--RKG---LLGRAID  347 (580)
Q Consensus       282 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~g---~~~~a~~  347 (580)
                      +.+.. +.+...+..+..++.+.|-...|.++..+-... +.+....+      ..+++.-   .  ...   -.+.|+.
T Consensus       195 ll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala  272 (822)
T PRK14574        195 AVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA  272 (822)
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence            99875 556778888899999999998888877654322 11111111      1111110   0  112   2455666


Q ss_pred             HHHHhhhC-CCCCCH-hhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043144          348 ILEKMPKH-GCTPNS-LSY----NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ  421 (580)
Q Consensus       348 ~~~~~~~~-~~~~~~-~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  421 (580)
                      -++.+... +..|.. ..|    .-.+-++...+++.++++.|+.+...+......+...+.++|...+..++|..+++.
T Consensus       273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~  352 (822)
T PRK14574        273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS  352 (822)
T ss_pred             HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            66666552 122322 222    234567888999999999999999887665566889999999999999999999999


Q ss_pred             HHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHhCCCH
Q 043144          422 LSNKH-----CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL-------------KPDTI-TYSSLVGGLSREGKV  482 (580)
Q Consensus       422 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-------------~p~~~-~~~~l~~~~~~~g~~  482 (580)
                      +....     .+++......|.-+|...+++++|..+++++.+...             .||-. .+..++..+...|++
T Consensus       353 ~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl  432 (822)
T PRK14574        353 LYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDL  432 (822)
T ss_pred             HhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCH
Confidence            86643     123444467889999999999999999999987321             22322 344567778999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      .+|++.++++....|. |......+...+...|.+.+|...++.+... -|.+..+....+.++...|++++|..+.+.+
T Consensus       433 ~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l  510 (822)
T PRK14574        433 PTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDV  510 (822)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999887665 8999999999999999999999999777655 3556778888999999999999999999999


Q ss_pred             HhCCCCCch
Q 043144          563 CSRGVVKKS  571 (580)
Q Consensus       563 ~~~g~~~~~  571 (580)
                      .+..++..+
T Consensus       511 ~~~~Pe~~~  519 (822)
T PRK14574        511 ISRSPEDIP  519 (822)
T ss_pred             HhhCCCchh
Confidence            888765543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.84  E-value=4.2e-15  Score=140.99  Aligned_cols=457  Identities=12%  Similarity=0.063  Sum_probs=227.4

Q ss_pred             HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043144           95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNAL  174 (580)
Q Consensus        95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  174 (580)
                      +...+.++|+.++.++++. .|.+...|.+    |.+..-++.|..+++...+. +|.+..+|..-...--.+|+.+...
T Consensus       387 VelE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~  460 (913)
T KOG0495|consen  387 VELEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVE  460 (913)
T ss_pred             HhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHH
Confidence            3344455566666665554 3333333332    34444555666666655543 2555555555555545555555555


Q ss_pred             HHHHHc-------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144          175 QVLERM-------SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD--VITYTILIEATCKESGVGQAMKLLD  245 (580)
Q Consensus       175 ~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~  245 (580)
                      .++.+.       |+.-+...|..=...|-..|..-.+..+....+..|+...  ..+|..-...|.+.+.++-|+.+|.
T Consensus       461 kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya  540 (913)
T KOG0495|consen  461 KIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYA  540 (913)
T ss_pred             HHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHH
Confidence            554443       3334444455555555555555555555555554443321  2345555555555555555555555


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144          246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS  325 (580)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  325 (580)
                      ..++. ++.+...|...+..--..|..++-..+|++....- +.....|......+-..|+...|..++..+.+.. +.+
T Consensus       541 ~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pns  617 (913)
T KOG0495|consen  541 HALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNS  617 (913)
T ss_pred             HHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCc
Confidence            55443 12234444444444444455555555555544331 2233334444444444455555555555554442 223


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHH
Q 043144          326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLT  404 (580)
Q Consensus       326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~  404 (580)
                      ...|..-+..-.....++.|..+|.+....  .|+...|.--+...--.++.++|++++++.++.  .|+-. .|..+.+
T Consensus       618 eeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQ  693 (913)
T KOG0495|consen  618 EEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQ  693 (913)
T ss_pred             HHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhH
Confidence            444545555555555555555555544433  233344443333333444555555555554443  23332 4455555


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043144          405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE  484 (580)
Q Consensus       405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  484 (580)
                      .+-+.++++.|.+.|..-.+. ++..+..|..+...-.+.|++-.|..+|++..-++ +-+...|...+..-.+.|+.++
T Consensus       694 i~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~  771 (913)
T KOG0495|consen  694 IEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQ  771 (913)
T ss_pred             HHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHH
Confidence            555555555555554443332 12334444444444445555555555555554443 2244445555555555555555


Q ss_pred             HHHHHHHHHhCCC-----------------------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043144          485 AIKLFHDLERLGV-----------------------------RPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT  535 (580)
Q Consensus       485 A~~~~~~~~~~~~-----------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  535 (580)
                      |..+..++.+.-+                             ..|+.....+...+....+++.|++.|.+.++.+ +..
T Consensus       772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~  850 (913)
T KOG0495|consen  772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDN  850 (913)
T ss_pred             HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-Ccc
Confidence            5544444432211                             1244445556666666667777777777777653 445


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ..+|.-+...+.++|.-++-.+++.+.....+
T Consensus       851 GD~wa~fykfel~hG~eed~kev~~~c~~~EP  882 (913)
T KOG0495|consen  851 GDAWAWFYKFELRHGTEEDQKEVLKKCETAEP  882 (913)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHhccCC
Confidence            56677777777777776666777766665543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.84  E-value=4.4e-15  Score=140.81  Aligned_cols=468  Identities=11%  Similarity=0.042  Sum_probs=383.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      +.+---..+...=.++++.++++ .|.++..|...    ....+.+.|+.++.+..+.= +.+...|    .+|++..-+
T Consensus       353 ~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvecc-p~s~dLw----lAlarLetY  422 (913)
T KOG0495|consen  353 LKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVECC-PQSMDLW----LALARLETY  422 (913)
T ss_pred             hhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHhc-cchHHHH----HHHHHHHHH
Confidence            34444445556667888998887 67777777765    45567777999999988753 4445444    456677788


Q ss_pred             hHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----hCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          171 DNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL----EKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       171 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      +.|..++.+.  .++.+...|.+-...--.+|+.+...+++.+.+    ..|+..+...|..=...|-+.|..-.+..+.
T Consensus       423 enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi  502 (913)
T KOG0495|consen  423 ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII  502 (913)
T ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence            9999999998  667788899988888889999999988887654    4678888999999999999999999999999


Q ss_pred             HHHHHcCCCC--CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          245 DEMRNKGCIP--DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       245 ~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      ...+..|+.-  -..+|+.-.+.|.+.+.++-|..+|....+.- +.+...|......--..|..++-..+++++... +
T Consensus       503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~  580 (913)
T KOG0495|consen  503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-C  580 (913)
T ss_pred             HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-C
Confidence            9998877653  24689999999999999999999999988753 556778888777777889999999999999987 3


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      +-....|...+..+-..|++..|..++..+.+.... +...|-..+.....+.++++|..+|.+....  .|+..+|..-
T Consensus       581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs  657 (913)
T KOG0495|consen  581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS  657 (913)
T ss_pred             CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence            556677877788888899999999999999887554 7788999999999999999999999998764  5777788777


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV  482 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  482 (580)
                      +....-.++.++|++++++..+.. +.-...|..+.+.+-+.++.+.|.+.|..=.+.. +-....|..|...--+.|.+
T Consensus       658 ~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~  735 (913)
T KOG0495|consen  658 ANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQL  735 (913)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcch
Confidence            777788899999999999988865 3335678888999999999999999998766653 33556787888888889999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----------------------------CCC
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR-----------------------------SCK  533 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------------------------~~~  533 (580)
                      -.|..++++..-.++. +...|...+.+-.+.|..+.|..++.+++..                             .+.
T Consensus       736 ~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce  814 (913)
T KOG0495|consen  736 VRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE  814 (913)
T ss_pred             hhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhcc
Confidence            9999999999877766 8889999999999999999998887666543                             123


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHH
Q 043144          534 PTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQV  576 (580)
Q Consensus       534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  576 (580)
                      .|+.....++..+....+++.|++.|++..+.+.+..+.+.|.
T Consensus       815 ~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~f  857 (913)
T KOG0495|consen  815 HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWF  857 (913)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHH
Confidence            4567777888889999999999999999999998888887765

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=7.8e-15  Score=134.06  Aligned_cols=473  Identities=12%  Similarity=0.018  Sum_probs=353.5

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .|.....-=..++++..|..+|++++.- ...+...|...+.+-.+......|..++++.+..- |.-...|.-.+.+--
T Consensus        75 ~WikYaqwEesq~e~~RARSv~ERALdv-d~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE  152 (677)
T KOG1915|consen   75 VWIKYAQWEESQKEIQRARSVFERALDV-DYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEE  152 (677)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHhc-ccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            4455555555678888999999999876 46677889999999999999999999999988764 333446666777767


Q ss_pred             hcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          166 RLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      ..|++..|.++|++. ...|+..+|.+.|..-.+.+.++.|..+|++.+-.  .|++.+|.-.+..-.+.|++..|..+|
T Consensus       153 ~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  153 MLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             HhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            799999999999986 88999999999999999999999999999998864  499999999999999999999999999


Q ss_pred             HHHHHc-CC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HHHHHHHHHHHHhcCCh---HHHHH-----
Q 043144          245 DEMRNK-GC-IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN--VITHNIILRSMCSTGRW---MDAER-----  312 (580)
Q Consensus       245 ~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~---~~a~~-----  312 (580)
                      +.+.+. |- .-+...+.+.+..-..+..++.|.-+|.-..+.= +.+  ...|..+...--+-|+.   ++++-     
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~  309 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKF  309 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhh
Confidence            988764 10 1123345555555556778899999888776541 222  33444444333344543   33332     


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH--hhHHHHHHH--------HHhcCCHHHHHH
Q 043144          313 LLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS--LSYNPVLHG--------FCKEKKMDRAIE  382 (580)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~--------~~~~~~~~~A~~  382 (580)
                      -|+.+++.+ +.|-.+|-..++.-...|+.+...++|++.+.. ++|-.  ..|...|-.        -....+.+.+.+
T Consensus       310 qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~  387 (677)
T KOG1915|consen  310 QYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQ  387 (677)
T ss_pred             HHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            234444443 567788888899888999999999999999886 33321  122222211        124688999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          383 YLEIMVSRGCYPDIVTYNTLLTAL----CKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR  458 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  458 (580)
                      +|+..++. ++....|+..+--+|    .++.++..|.+++..+....  |...+|...|..-.+.++++.+..++++.+
T Consensus       388 vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~c--PK~KlFk~YIelElqL~efDRcRkLYEkfl  464 (677)
T KOG1915|consen  388 VYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKC--PKDKLFKGYIELELQLREFDRCRKLYEKFL  464 (677)
T ss_pred             HHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccC--CchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            99999874 333455665555444    46789999999998887654  888899999999999999999999999999


Q ss_pred             HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 043144          459 TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV-RPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEA  537 (580)
Q Consensus       459 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  537 (580)
                      +-+ +-+-.+|......-...|+.+.|..+|+-+++... ......|.+.|..-...|.+++|..+++++++.  .+...
T Consensus       465 e~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~k  541 (677)
T KOG1915|consen  465 EFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVK  541 (677)
T ss_pred             hcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccch
Confidence            875 44778888888888899999999999999886432 223456777777778899999999999999976  45556


Q ss_pred             HHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHhCCCCCch
Q 043144          538 TYTILIEGIA-----YEG-----------LAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       538 ~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      +|...+..-.     +.|           ....|+.+|+++...--..++
T Consensus       542 vWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~  591 (677)
T KOG1915|consen  542 VWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTP  591 (677)
T ss_pred             HHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCc
Confidence            7777765433     334           566888888887654433333

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=3.8e-15  Score=136.06  Aligned_cols=440  Identities=13%  Similarity=0.052  Sum_probs=345.6

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHH
Q 043144          117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILR  194 (580)
Q Consensus       117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~  194 (580)
                      -+...|...+.--..++++..|.++|++.+..+ ..+...|...+.+-+++.++..|..+++++  ..|.-...|...+.
T Consensus        71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y  149 (677)
T KOG1915|consen   71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY  149 (677)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence            355677777777788999999999999999877 778889999999999999999999999998  34444557888888


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144          195 TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE  274 (580)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  274 (580)
                      .--..|++..|.++|++-.+.  .|+...|.+.|..-.+.+.++.|..+++...-.  .|++..|--.+..-.++|.+..
T Consensus       150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence            888899999999999999885  599999999999999999999999999998764  5899999999998899999999


Q ss_pred             HHHHHHHhhhC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC--hhhHHHHHHHHHhcCCHHHHHHH--
Q 043144          275 AIKFLNDMPSY-G-CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS--VVTFNILINFLCRKGLLGRAIDI--  348 (580)
Q Consensus       275 A~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~--  348 (580)
                      |..+|....+. | -.-+...+.+...--..++.++.|.-+|+-.+.. ++.+  ...|..+...--+.|+.......  
T Consensus       226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv  304 (677)
T KOG1915|consen  226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV  304 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence            99999987653 1 0112334444444445678899999999998876 2333  34555555555566765544432  


Q ss_pred             ------HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH--------HHHhcCCh
Q 043144          349 ------LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV--TYNTLLT--------ALCKDGKV  412 (580)
Q Consensus       349 ------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~--------~~~~~g~~  412 (580)
                            ++.+++.+ +.|-.+|--.+..-...|+.+...++|++.+.. +.|-..  .|...|-        .-....+.
T Consensus       305 ~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~  382 (677)
T KOG1915|consen  305 GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDV  382 (677)
T ss_pred             hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence                  34455543 337788888888888899999999999999875 344221  2322221        12356789


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHH----HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144          413 DVAVEILNQLSNKHCSPVLITYNT----VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKL  488 (580)
Q Consensus       413 ~~A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  488 (580)
                      +.+.++++...+. +|....||.-    ......++.+...|.+++...+  |.-|...++...|..-.+.++++.+..+
T Consensus       383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL  459 (677)
T KOG1915|consen  383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL  459 (677)
T ss_pred             HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence            9999999988873 3444445444    4444457899999999999887  6678889999999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      +++.++.++. |..+|...+..-...|++++|..+|.-++.... ......|...++.-...|.++.|+.+++++++...
T Consensus       460 YEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~  538 (677)
T KOG1915|consen  460 YEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ  538 (677)
T ss_pred             HHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence            9999998866 888999998888899999999999999986532 22355788888888999999999999999998764


Q ss_pred             C
Q 043144          568 V  568 (580)
Q Consensus       568 ~  568 (580)
                      -
T Consensus       539 h  539 (677)
T KOG1915|consen  539 H  539 (677)
T ss_pred             c
Confidence            3

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=6.1e-17  Score=146.76  Aligned_cols=456  Identities=14%  Similarity=0.111  Sum_probs=322.6

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPC-TSLIRGFCKVGKTRKATRVMEIVEDSGAVPD----VITYNV  159 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~  159 (580)
                      +...+|.+.|..+.-+.+|+..|+-.++....|+.... ..+.+.+.+...+.+|++.|+..++.-+..+    ....+.
T Consensus       202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n  281 (840)
T KOG2003|consen  202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN  281 (840)
T ss_pred             HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence            34567788888899999999999999888777776543 3566778999999999999988877532222    334556


Q ss_pred             HHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC------------ChhhHHH
Q 043144          160 LISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP------------DVITYTI  226 (580)
Q Consensus       160 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~  226 (580)
                      ++-.+.+.|+++.|+.-|+.. ...|+..+-..|+-++...|+.++..+.|.+++.....|            +....+.
T Consensus       282 igvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~e  361 (840)
T KOG2003|consen  282 IGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNE  361 (840)
T ss_pred             cCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHH
Confidence            666778899999999999986 667888887777778888999999999999998753333            2222322


Q ss_pred             HHH-----HHHhcC--CHhHHHHHHHHHHHcCCCCCHhH---H----------H--------HHHHHHHhcCCHHHHHHH
Q 043144          227 LIE-----ATCKES--GVGQAMKLLDEMRNKGCIPDVVT---Y----------N--------VLVNGICKEGRLDEAIKF  278 (580)
Q Consensus       227 li~-----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~----------~--------~l~~~~~~~g~~~~A~~~  278 (580)
                      .|.     -.-+.+  +.++++-.-..+..--+.|+-..   |          .        .-..-+.++|+++.|+++
T Consensus       362 ai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aiei  441 (840)
T KOG2003|consen  362 AIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEI  441 (840)
T ss_pred             HHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHH
Confidence            221     111111  11222222222221112222110   1          0        112357789999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHH--HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          279 LNDMPSYGCQPNVITHNII--LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG  356 (580)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  356 (580)
                      +.-..+.+-......-+.+  +..+....++..|.++-+..+..+ .-+......-.+.....|++++|.+.+++.+.. 
T Consensus       442 lkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-  519 (840)
T KOG2003|consen  442 LKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-  519 (840)
T ss_pred             HHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC-
Confidence            9888764322222222222  222233456888888877776542 223333333333445679999999999999886 


Q ss_pred             CCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144          357 CTPNSLSYNP---VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT  433 (580)
Q Consensus       357 ~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  433 (580)
                         |...-.+   +.-.+-..|+.++|++.|-++..- ...+..++..+...|-...+...|++++.+.... ++.|+..
T Consensus       520 ---dasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~i  594 (840)
T KOG2003|consen  520 ---DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAI  594 (840)
T ss_pred             ---chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHH
Confidence               4333333   334567789999999999877542 2346678888889999999999999999776653 4667888


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG-LC  512 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~  512 (580)
                      ..-+.+.|-+.|+-..|++++-+--.. ++.+.++...|...|....-+++++.+|+++.-  +.|+..-|..++-. +.
T Consensus       595 lskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  595 LSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFR  671 (840)
T ss_pred             HHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHH
Confidence            999999999999999999987654443 567888999999999999999999999999865  57899999877655 55


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144          513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL  551 (580)
Q Consensus       513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  551 (580)
                      +.|++++|.++++...++ +|.|..++..|++.+...|-
T Consensus       672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            789999999999998876 78999999999999877774

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.82  E-value=1.3e-14  Score=143.03  Aligned_cols=471  Identities=17%  Similarity=0.155  Sum_probs=337.6

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      .++.+...|++++|.+++.++++. .|.+...|..|...|-.+|+.+++...+-.+.... |.|...|..+.....+.|.
T Consensus       145 eAN~lfarg~~eeA~~i~~EvIkq-dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~  222 (895)
T KOG2076|consen  145 EANNLFARGDLEEAEEILMEVIKQ-DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGN  222 (895)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh-CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhccc
Confidence            344555569999999999999998 67778899999999999999999998887776665 7788999999999999999


Q ss_pred             hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH----HHHHHHhcCCHhHHHHH
Q 043144          170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTI----LIEATCKESGVGQAMKL  243 (580)
Q Consensus       170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~~A~~~  243 (580)
                      ++.|.-.|.++  -.|++......-...|-+.|+...|..-|.++.....+.|..-+..    ++..+...++-+.|.+.
T Consensus       223 i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~  302 (895)
T KOG2076|consen  223 INQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA  302 (895)
T ss_pred             HHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            99999999998  4456666677778899999999999999999999864333333333    34556677777999999


Q ss_pred             HHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---------------------------CCHHHHH
Q 043144          244 LDEMRNKG-CIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ---------------------------PNVITHN  295 (580)
Q Consensus       244 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---------------------------~~~~~~~  295 (580)
                      ++.....+ -..+...++.++..+.+...++.+......+......                           ++...+.
T Consensus       303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~r  382 (895)
T KOG2076|consen  303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIR  382 (895)
T ss_pred             HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHh
Confidence            99887632 2335667889999999999999999888877652112                           2222211


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043144          296 IILRSMCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK  373 (580)
Q Consensus       296 ~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  373 (580)
                       +.-++...+..+....+.....+..  ...+...+.-+..+|...|++.+|+.+|..+.......+...|..+..+|..
T Consensus       383 -l~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~  461 (895)
T KOG2076|consen  383 -LMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYME  461 (895)
T ss_pred             -HhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHH
Confidence             2223444455555555555555555  3335568889999999999999999999999988666678899999999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhC
Q 043144          374 EKKMDRAIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILNQLSNK--------HCSPVLITYNTVIDGLSKV  444 (580)
Q Consensus       374 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~  444 (580)
                      .|.+++|.+.|+.++..  .|+. .....|...+.+.|+.++|.+.++.+...        ...|.....-...+.+...
T Consensus       462 l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~  539 (895)
T KOG2076|consen  462 LGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV  539 (895)
T ss_pred             HhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence            99999999999999986  4444 47778888899999999999999996532        2334444445566777888


Q ss_pred             CCHHHHHHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH------HhCC
Q 043144          445 GKTEQAMKLLEEMRTKG----------------------LKPDTITYSSLVGGLSREGKVDEAIKLFHDL------ERLG  496 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~~----------------------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~  496 (580)
                      |+.++-......|+...                      ..-...+...++.+-.+.++.....+....-      ...+
T Consensus       540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~  619 (895)
T KOG2076|consen  540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG  619 (895)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence            98887666555554321                      1112222333444444444422222211111      1112


Q ss_pred             CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          497 VRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSC--KPTE---ATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       497 ~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      ..-+  ...+..++.++.+.+++++|..+...+.....  .++.   ..-...+.+.+..+++..|..+++.|+..
T Consensus       620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~  695 (895)
T KOG2076|consen  620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQ  695 (895)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            2111  13456677888999999999999998876522  1222   22344556778899999999999999876

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=8.4e-15  Score=132.19  Aligned_cols=334  Identities=16%  Similarity=0.229  Sum_probs=238.4

Q ss_pred             HHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHH--HHHhcCChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144           92 RRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIR--GFCKVGKTRKA-TRVMEIVEDSGAVPDVITYNVLISGYCRLG  168 (580)
Q Consensus        92 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  168 (580)
                      -....+|+..++--+|+.|...|.+.+...-..++.  +|....++--| .+.|-.|.+.| ..+..+|        +.|
T Consensus       123 ~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW--------K~G  193 (625)
T KOG4422|consen  123 LKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW--------KSG  193 (625)
T ss_pred             HHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc--------ccc
Confidence            345667888888888888888877666655544443  33444444322 24454555444 3333333        234


Q ss_pred             ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144          169 EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR  248 (580)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  248 (580)
                      +..+  -+|+..  |....++..+|.++|+-.+.+.|.+++.+......+.+..+||.+|.+-.    +....++..+|.
T Consensus       194 ~vAd--L~~E~~--PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S----~~~~K~Lv~EMi  265 (625)
T KOG4422|consen  194 AVAD--LLFETL--PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS----YSVGKKLVAEMI  265 (625)
T ss_pred             cHHH--HHHhhc--CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH----hhccHHHHHHHH
Confidence            4333  344443  56778899999999999999999999999888777888899999987743    233378899999


Q ss_pred             HcCCCCCHhHHHHHHHHHHhcCCHHHH----HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHHHHHc--C
Q 043144          249 NKGCIPDVVTYNVLVNGICKEGRLDEA----IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMD-AERLLAEMVLK--G  321 (580)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A----~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--~  321 (580)
                      .....||..|+|+++++..+.|+++.|    ++++.+|.+.|+.|...+|..+|..+++.++..+ +..++.++...  |
T Consensus       266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG  345 (625)
T KOG4422|consen  266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG  345 (625)
T ss_pred             HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence            988999999999999999999987754    5677888999999999999999998888877644 55555555532  2


Q ss_pred             ------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----CCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          322 ------CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHG----CTPN---SLSYNPVLHGFCKEKKMDRAIEYLEIMV  388 (580)
Q Consensus       322 ------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~  388 (580)
                            .+.|...|...+..|.+..+.+-|.++..-+....    +.|+   ..-|..+....++....+.-...|+.|.
T Consensus       346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV  425 (625)
T KOG4422|consen  346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV  425 (625)
T ss_pred             CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  12345567788888888899998888876554321    1222   2335667777888888999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          389 SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS  442 (580)
Q Consensus       389 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  442 (580)
                      -.-.-|...+...++.+..-.|.++-..+++..+...|..........++..++
T Consensus       426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~  479 (625)
T KOG4422|consen  426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLA  479 (625)
T ss_pred             cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHh
Confidence            777778888888889998889999999999988887664443333333444444

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.1e-13  Score=125.00  Aligned_cols=431  Identities=15%  Similarity=0.181  Sum_probs=310.5

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCChhH-HHHHHHHc-CC-CCCcchHHHHHH
Q 043144          120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC--RLGEIDN-ALQVLERM-SV-APDVVTYNTILR  194 (580)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~-A~~~~~~~-~~-~~~~~~~~~l~~  194 (580)
                      .+-+.++. ...+|....+.-+|+.|...|++.+...-..|...-+  ...++-- -.+.|-.| .. .....+|     
T Consensus       117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sW-----  190 (625)
T KOG4422|consen  117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSW-----  190 (625)
T ss_pred             cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccc-----
Confidence            44556665 4778999999999999999998888877666654433  3333322 23445455 22 2334455     


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144          195 TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE  274 (580)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  274 (580)
                         +.|...+  -+|+.     .+.+..++..+|.+.++-...+.|.+++++..+...+.+..+||.+|.+-.-..    
T Consensus       191 ---K~G~vAd--L~~E~-----~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----  256 (625)
T KOG4422|consen  191 ---KSGAVAD--LLFET-----LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----  256 (625)
T ss_pred             ---ccccHHH--HHHhh-----cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----
Confidence               3444433  22332     234678999999999999999999999999998877889999999987644322    


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH-HHHHH
Q 043144          275 AIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDA----ERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGR-AIDIL  349 (580)
Q Consensus       275 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~  349 (580)
                      ..++..+|....+.||..|+|+++.+..+.|+++.|    .+++.+|.+.|+.|...+|..++..+.+.++..+ +..++
T Consensus       257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i  336 (625)
T KOG4422|consen  257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI  336 (625)
T ss_pred             cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence            267899999999999999999999999999988765    5677888999999999999999999998877644 44444


Q ss_pred             HHhhh----CCC----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCH---HHHHHHHHHHHhcCChHH
Q 043144          350 EKMPK----HGC----TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG----CYPDI---VTYNTLLTALCKDGKVDV  414 (580)
Q Consensus       350 ~~~~~----~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~---~~~~~li~~~~~~g~~~~  414 (580)
                      .++..    ..+    +.|..-|...|..|.+..+.+-|.++..-+....    +.|+.   .-|..+..+.++....+.
T Consensus       337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~  416 (625)
T KOG4422|consen  337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV  416 (625)
T ss_pred             HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44433    112    2245567778888889999998988877655321    12232   345667788888899999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CH--------H--
Q 043144          415 AVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG-KV--------D--  483 (580)
Q Consensus       415 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~--------~--  483 (580)
                      -...|+.+.-.-..|+..+...++.+..-.|+++-.-+++.+++..|..-+......++..+++.. +.        .  
T Consensus       417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~  496 (625)
T KOG4422|consen  417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVA  496 (625)
T ss_pred             HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence            999999998877778888888999999999999999999999888775545555555555555443 11        0  


Q ss_pred             ---HHHHHH-------HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc
Q 043144          484 ---EAIKLF-------HDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC----KPTEATYTILIEGIAYE  549 (580)
Q Consensus       484 ---~A~~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~  549 (580)
                         -|..++       .++...  .......+..+..+.+.|++++|.+++.-..+.+-    .|.......+.+.-.+.
T Consensus       497 ~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~  574 (625)
T KOG4422|consen  497 FAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS  574 (625)
T ss_pred             HHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence               011111       122222  33455677777788999999999999999876532    34444555677777889


Q ss_pred             CCHHHHHHHHHHHHhCCCCCchh
Q 043144          550 GLAKEALDLLNQLCSRGVVKKSS  572 (580)
Q Consensus       550 g~~~~A~~~~~~~~~~g~~~~~~  572 (580)
                      .+...|..+++-|...+++.-.+
T Consensus       575 ~spsqA~~~lQ~a~~~n~~~~E~  597 (625)
T KOG4422|consen  575 NSPSQAIEVLQLASAFNLPICEG  597 (625)
T ss_pred             CCHHHHHHHHHHHHHcCchhhhH
Confidence            99999999999998888766543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.78  E-value=5.7e-14  Score=138.61  Aligned_cols=446  Identities=15%  Similarity=0.090  Sum_probs=312.6

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144          119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTL  196 (580)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~  196 (580)
                      .......++.+...|++++|.+++.++++.. |.....|..|+..|-+.|+.+++...+-.+  -.|.|...|..+....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3334444555566699999999999999987 788899999999999999999999987766  4466788999999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHhcCCH
Q 043144          197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYN----VLVNGICKEGRL  272 (580)
Q Consensus       197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~  272 (580)
                      .+.|.++.|.-.|.++++.+ +++....---+..|-+.|+...|...|.++.....+.|..-..    ..+..+...++.
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999999986 3455555556778899999999999999999874322322222    345567778888


Q ss_pred             HHHHHHHHHhhhC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---------------------------CCC
Q 043144          273 DEAIKFLNDMPSY-GCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG---------------------------CSP  324 (580)
Q Consensus       273 ~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~  324 (580)
                      +.|.+.++..... +-..+...++.++..+.....++.+...........                           ..+
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~  376 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY  376 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence            9999998887652 224455678888888999999999998887776521                           112


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHG--CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      +..++ .++-++......+....+........  +.-+...|.-+..+|...|++.+|+.+|..+......-+...|..+
T Consensus       377 ~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~  455 (895)
T KOG2076|consen  377 DLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKL  455 (895)
T ss_pred             cchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHH
Confidence            22221 12222333333333444444444444  3445667888899999999999999999999987666677799999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT--------KGLKPDTITYSSLVG  474 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--------~~~~p~~~~~~~l~~  474 (580)
                      ..+|...|.++.|.+.|+...... +.+...--.|...+.+.|++++|.+.+..+..        ....|+.........
T Consensus       456 a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d  534 (895)
T KOG2076|consen  456 ARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCD  534 (895)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHH
Confidence            999999999999999999999876 34466667788889999999999999998642        123344555555667


Q ss_pred             HHHhCCCHHHHHHHHHHHHhCC-----CCC-----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHH-----
Q 043144          475 GLSREGKVDEAIKLFHDLERLG-----VRP-----------------NVITYNSIMLGLCKARQTYRAIDILADM-----  527 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----  527 (580)
                      .+...|+.++=..+...|....     +-|                 ........+.+-.+.++.....+-+..-     
T Consensus       535 ~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~  614 (895)
T KOG2076|consen  535 ILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRA  614 (895)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhh
Confidence            7788888877555544443211     001                 1112222333333333322222221111     


Q ss_pred             -HHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          528 -VTRSCKPTE--ATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       528 -~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                       ...++..+.  ..+..++.++.+.|++.+|..+...+.+....
T Consensus       615 ~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f  658 (895)
T KOG2076|consen  615 VELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIF  658 (895)
T ss_pred             hhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhh
Confidence             011222221  34566778889999999999999998876543

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.77  E-value=1.5e-15  Score=137.82  Aligned_cols=445  Identities=15%  Similarity=0.125  Sum_probs=308.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCChhHHHHHHHHc-CCCCC------cchHHHHHHHH
Q 043144          125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITY-NVLISGYCRLGEIDNALQVLERM-SVAPD------VVTYNTILRTL  196 (580)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~-~~~~~------~~~~~~l~~~~  196 (580)
                      +..-|.....+.+|+..|+-+++....|+.-.. ..++..+.+..++.+|+.+|+.. ...|.      ....+.++..+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            444556666788999999999887766665433 34678888899999999999876 22232      23466777788


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC------------CCHhHHHHHHH
Q 043144          197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI------------PDVVTYNVLVN  264 (580)
Q Consensus       197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~l~~  264 (580)
                      .+.|+++.|+..|+..++..  |+..+-..|+-++..-|+-++..+.|..+......            |+....+.-+.
T Consensus       287 iq~gqy~dainsfdh~m~~~--pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~  364 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEEA--PNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIK  364 (840)
T ss_pred             EecccchhhHhhHHHHHHhC--ccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHh
Confidence            99999999999999998865  88877777888888889999999999998764222            23333332221


Q ss_pred             -----HHHhcC--CHHHHHHHHHHhhhCCCCCCHHH---H----------H--------HHHHHHHhcCChHHHHHHHHH
Q 043144          265 -----GICKEG--RLDEAIKFLNDMPSYGCQPNVIT---H----------N--------IILRSMCSTGRWMDAERLLAE  316 (580)
Q Consensus       265 -----~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~---~----------~--------~ll~~~~~~~~~~~a~~~~~~  316 (580)
                           -..+.+  +.++++-.--++...-+.|+...   |          .        .-...+.+.|+++.|.++++.
T Consensus       365 nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv  444 (840)
T KOG2003|consen  365 NDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV  444 (840)
T ss_pred             hHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH
Confidence                 111111  22233332233332222333210   0          0        112236788999999999988


Q ss_pred             HHHcCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 043144          317 MVLKGCSPSVVTFNILINFLCR--KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP  394 (580)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~  394 (580)
                      +.+.+-......-+.|...+.-  ..++..|.+.-+..+.... -++.....-...-..+|++++|.+.|++.+..+.. 
T Consensus       445 ~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas-  522 (840)
T KOG2003|consen  445 FEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDAS-  522 (840)
T ss_pred             HHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchH-
Confidence            8776433333333333333332  3467777777776665421 13333333334455689999999999999875322 


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG  474 (580)
Q Consensus       395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  474 (580)
                      -...+-.+.-.+-..|++++|++.|-.+...- ..+..+...+...|.-..++..|++++.+.... ++.|+.++.-|..
T Consensus       523 c~ealfniglt~e~~~~ldeald~f~klh~il-~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~d  600 (840)
T KOG2003|consen  523 CTEALFNIGLTAEALGNLDEALDCFLKLHAIL-LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLAD  600 (840)
T ss_pred             HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHH
Confidence            22233444556788999999999997765422 245667777888999999999999999887654 5668889999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI-AYEGLAK  553 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  553 (580)
                      .|-+.|+-.+|.+.+-.--+. ++-+..+..+|..-|....-+++|+.+|+++.-  +.|+..-|..++..| .++|++.
T Consensus       601 lydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyq  677 (840)
T KOG2003|consen  601 LYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQ  677 (840)
T ss_pred             Hhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHH
Confidence            999999999999987665554 344888999999888888899999999999863  689999999887666 7899999


Q ss_pred             HHHHHHHHHHhCCCCCchhHHHHHhh
Q 043144          554 EALDLLNQLCSRGVVKKSSAEQVAVK  579 (580)
Q Consensus       554 ~A~~~~~~~~~~g~~~~~~~~~~~v~  579 (580)
                      .|.++++...++ ++.+-.+...+|+
T Consensus       678 ka~d~yk~~hrk-fpedldclkflvr  702 (840)
T KOG2003|consen  678 KAFDLYKDIHRK-FPEDLDCLKFLVR  702 (840)
T ss_pred             HHHHHHHHHHHh-CccchHHHHHHHH
Confidence            999999998665 5667777777765

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.77  E-value=1e-14  Score=128.39  Aligned_cols=452  Identities=12%  Similarity=0.085  Sum_probs=295.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      ++-+..+.++..|+.+++.....+...+..+-..+..++...|++++|...+..+.... .++...+..|..++.-.|.+
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y  107 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY  107 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence            66778889999999999988766555454555667788999999999999999998866 66677777788888889999


Q ss_pred             hHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144          171 DNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK  250 (580)
Q Consensus       171 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  250 (580)
                      .+|..+..+.  +.++..-..|...-.+.++-++-....+.+.+.     ..--.+|.......-.+.+|++++..++..
T Consensus       108 ~eA~~~~~ka--~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d  180 (557)
T KOG3785|consen  108 IEAKSIAEKA--PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD  180 (557)
T ss_pred             HHHHHHHhhC--CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998876  233344445556666778877777766555442     233455667767777899999999999876


Q ss_pred             CCCCCHhHHHHHH-HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144          251 GCIPDVVTYNVLV-NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF  329 (580)
Q Consensus       251 ~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  329 (580)
                        .|+-...|..+ -+|.+..-++-+.+++.--.+. ++.++...+..+....+.-+-..|..-.+.+...+..    .|
T Consensus       181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~  253 (557)
T KOG3785|consen  181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EY  253 (557)
T ss_pred             --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cc
Confidence              35566666544 4667788888888888776554 2334455555554444433333344444444443211    11


Q ss_pred             HHHHHHHHh-----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          330 NILINFLCR-----KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT  404 (580)
Q Consensus       330 ~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~  404 (580)
                      - .+.-.++     ..+-+.|++++-.+.+.    -+..-..++-.|.+.+++.+|..+.+.+.-  ..|-......+..
T Consensus       254 ~-f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~  326 (557)
T KOG3785|consen  254 P-FIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF  326 (557)
T ss_pred             h-hHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH
Confidence            1 1222222     23456777777666554    233445566678888999999888776532  1233333333332


Q ss_pred             H-----HHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144          405 A-----LCKDGKVDVAVEILNQLSNKHCS-PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR  478 (580)
Q Consensus       405 ~-----~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  478 (580)
                      +     ......+.-|...|+..-+.+.. .+...-.++...+.-..++++.+..++.....-...|...+ .+..+++.
T Consensus       327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~a  405 (557)
T KOG3785|consen  327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLA  405 (557)
T ss_pred             HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHH
Confidence            2     22223455666777665544422 22334556666666777888888888887765434344444 47788889


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH
Q 043144          479 EGKVDEAIKLFHDLERLGVRPNVITY-NSIMLGLCKARQTYRAIDILADMVTRSCKPTE-ATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       479 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~  556 (580)
                      .|++.+|+++|-.+....++ |..+| ..|+.+|.+.|.++.|++++-++   +-+.+. .....++..|.+.|.+=-|.
T Consensus       406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaa  481 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAA  481 (557)
T ss_pred             hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888765556 44444 56778888999998888776444   222222 23455667788888888888


Q ss_pred             HHHHHHHhCCCCC
Q 043144          557 DLLNQLCSRGVVK  569 (580)
Q Consensus       557 ~~~~~~~~~g~~~  569 (580)
                      +.|+.+...++.|
T Consensus       482 KAFd~lE~lDP~p  494 (557)
T KOG3785|consen  482 KAFDELEILDPTP  494 (557)
T ss_pred             HhhhHHHccCCCc
Confidence            8888887766544

>TIGR00540 hemY_coli hemY protein

Probab=99.71  E-value=9e-14  Score=136.38  Aligned_cols=290  Identities=11%  Similarity=0.020  Sum_probs=204.9

Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh--hhHHHHHHHHHhcCCHH
Q 043144          267 CKEGRLDEAIKFLNDMPSYGCQPN-VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV--VTFNILINFLCRKGLLG  343 (580)
Q Consensus       267 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~  343 (580)
                      ...|+++.|.+.+.+..+.  .|+ ...+.....+....|+++.|.+++.++.+..  |+.  .........+...|+++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHH
Confidence            4578888888888877665  343 3344455666778889999999888887653  333  23344577788889999


Q ss_pred             HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHH
Q 043144          344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL---CKDGKVDVAVEILN  420 (580)
Q Consensus       344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~  420 (580)
                      .|...++.+.+..+. ++..+..+...+.+.|++++|.+.+..+.+.+..+.......-..++   ...+..+.+.+.+.
T Consensus       171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~  249 (409)
T TIGR00540       171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLL  249 (409)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999988887544 66778888888999999999999999888876542222211111111   22223333334444


Q ss_pred             HHHhCCC---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144          421 QLSNKHC---SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT---YSSLVGGLSREGKVDEAIKLFHDLER  494 (580)
Q Consensus       421 ~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~  494 (580)
                      .+.+...   +.+...+..++..+...|++++|.+.+++..+..  ||...   ...........++.+.+.+.+++..+
T Consensus       250 ~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       250 NWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             HHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            4444331   2367888888999999999999999999998863  44332   11222223445788889999988887


Q ss_pred             CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          495 LGVRPNV--ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       495 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..+. |+  ....++.+.|.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++...
T Consensus       328 ~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       328 NVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             hCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6443 45  667789999999999999999999533333478888888999999999999999999998754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=7.9e-13  Score=120.94  Aligned_cols=161  Identities=14%  Similarity=0.085  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC  407 (580)
Q Consensus       328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  407 (580)
                      |...+.+-|+-.++.++|...|++.++.++. ....|+.|..-|...++...|++.|+..++-.+. |...|-.|.++|.
T Consensus       332 TCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~-DyRAWYGLGQaYe  409 (559)
T KOG1155|consen  332 TCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPR-DYRAWYGLGQAYE  409 (559)
T ss_pred             ceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCch-hHHHHhhhhHHHH
Confidence            4444444444455555555555555544322 3334444445555555555555555555443222 4445555555555


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 043144          408 KDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIK  487 (580)
Q Consensus       408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  487 (580)
                      -.+-..-|+-.|+++.... |.|...|.+|..+|.+.++.++|++.|......| ..+...+..|...|-+.++.++|..
T Consensus       410 im~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~  487 (559)
T KOG1155|consen  410 IMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQ  487 (559)
T ss_pred             HhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHH
Confidence            5555555555555544433 3344445555555555555555555555544433 2233444455555555555555555


Q ss_pred             HHHHH
Q 043144          488 LFHDL  492 (580)
Q Consensus       488 ~~~~~  492 (580)
                      .|++.
T Consensus       488 ~yek~  492 (559)
T KOG1155|consen  488 YYEKY  492 (559)
T ss_pred             HHHHH
Confidence            54443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=1.3e-13  Score=126.87  Aligned_cols=424  Identities=13%  Similarity=0.058  Sum_probs=269.7

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD-IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      .+.+..+.+.++|.+++|+++|.+++..  .|+ +.-|.....+|...|++++..+--...++.. |.-+..+..-..++
T Consensus       117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~  193 (606)
T KOG0547|consen  117 ALKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH  193 (606)
T ss_pred             HHHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence            4455677889999999999999999986  345 5667777788899999999999888888775 44455777778888


Q ss_pred             HhcCChhHHHHHHHHc----CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 043144          165 CRLGEIDNALQVLERM----SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQA  240 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  240 (580)
                      -..|++++|+.=..-.    ++ .|..+--.+=+.+-+     .|.....+-.+.+-+|...+-+ .|..|...=..+- 
T Consensus       194 E~lg~~~eal~D~tv~ci~~~F-~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~-fi~syf~sF~~~~-  265 (606)
T KOG0547|consen  194 EQLGKFDEALFDVTVLCILEGF-QNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSAT-FIASYFGSFHADP-  265 (606)
T ss_pred             HhhccHHHHHHhhhHHHHhhhc-ccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHH-HHHHHHhhccccc-
Confidence            8899998886533222    11 111111111111111     1222222222222222222211 2222211000000 


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHHh-cCCHHHHHHHHHHhhhC---CCC---CC------HHHHHHHHHHHHhcCCh
Q 043144          241 MKLLDEMRNKGCIPDVVTYNVLVNGICK-EGRLDEAIKFLNDMPSY---GCQ---PN------VITHNIILRSMCSTGRW  307 (580)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~---~~~---~~------~~~~~~ll~~~~~~~~~  307 (580)
                         ...+...+...|...-..+-..+.. ...+.+|.+.+.+-...   ...   .|      ..+......-+.-.|+.
T Consensus       266 ---~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~  342 (606)
T KOG0547|consen  266 ---KPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS  342 (606)
T ss_pred             ---cccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence               0000000000011111111111111 11233333333321110   000   11      11122222224456888


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIM  387 (580)
Q Consensus       308 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  387 (580)
                      ..|..-|+..++.... +...|-.+..+|...++.++..+.|.+..+.++. ++.+|..-...+.-.+++++|..-|++.
T Consensus       343 ~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Ka  420 (606)
T KOG0547|consen  343 LGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKA  420 (606)
T ss_pred             hhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999887532 3334778888899999999999999999888655 7788888888888899999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC----
Q 043144          388 VSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK----  463 (580)
Q Consensus       388 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~----  463 (580)
                      ++..+. +...|..+..+..+.+.++++...|++..+.. |..+.+|+....++...++++.|.+.|+..++....    
T Consensus       421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            876433 45578888888889999999999999998865 556889999999999999999999999998864211    


Q ss_pred             -CCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          464 -PDTITY--SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       464 -p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                       .+..++  -.++. +.-.+++..|..+++++.+.+++ ....|..|...-.+.|+.++|+++|++...
T Consensus       499 ~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  499 IVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence             112111  12221 22348999999999999987766 567899999999999999999999998764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=1.3e-13  Score=134.38  Aligned_cols=284  Identities=10%  Similarity=0.029  Sum_probs=205.6

Q ss_pred             cCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHH
Q 043144          269 EGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFN--ILINFLCRKGLLGRA  345 (580)
Q Consensus       269 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a  345 (580)
                      .|++++|.+.+....+..  +++. .+.....+....|+++.|.+.+.++.+.  .|+.....  .....+...|+++.|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            688888887777655432  1222 2333344457788888888888888765  34433222  336677888888888


Q ss_pred             HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCChHHHHHH
Q 043144          346 IDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-------TYNTLLTALCKDGKVDVAVEI  418 (580)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~~~~A~~~  418 (580)
                      ...++++.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++..       ++..++.......+.+...++
T Consensus       173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            8888888877544 67777888888888888888888888888765542221       223334334444555666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      ++.+.+.. +.++.....+...+...|+.++|.+.+++..+.  .||....  ++.+....++.+++.+..+...+..+.
T Consensus       252 w~~lp~~~-~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        252 WKNQSRKT-RHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HHhCCHHH-hCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC
Confidence            66664432 456778888889999999999999999988874  4555332  233444568999999999998876554


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                       |...+..+...|.+.|++++|.+.|+.+.+.  .|+...+..+..++.+.|+.++|.+++++....
T Consensus       327 -~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        327 -TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             6777888999999999999999999999865  788888889999999999999999999987653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=3.2e-12  Score=117.02  Aligned_cols=368  Identities=11%  Similarity=0.050  Sum_probs=272.6

Q ss_pred             CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HhH
Q 043144          181 SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD--VVT  258 (580)
Q Consensus       181 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~  258 (580)
                      +...|...+...+..+.+.|....|+..|...+..-    +..|.+.+....-.-+.+.+..+...+     +.|  ...
T Consensus       159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~----P~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~  229 (559)
T KOG1155|consen  159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY----PWFWSAWLELSELITDIEILSILVVGL-----PSDMHWMK  229 (559)
T ss_pred             cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC----CcchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHH
Confidence            345677777777888888999999999998887642    334554444433333333333222111     212  112


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHH
Q 043144          259 YNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC--SPSVVTFNILINFL  336 (580)
Q Consensus       259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~  336 (580)
                      --.+..++-.....++++.-.......|++.+...-+....+.....++++|+.+|+++.+.+.  -.|..+|+.++-.-
T Consensus       230 ~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~  309 (559)
T KOG1155|consen  230 KFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK  309 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH
Confidence            2234556667778899999999988888777776666666677889999999999999998731  12556777665433


Q ss_pred             HhcCCHH-HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043144          337 CRKGLLG-RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVA  415 (580)
Q Consensus       337 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  415 (580)
                      .....+. -|..++ .+-+    --+.|...+.+-|.-.++.++|...|++.++.++. ....|+.+.+-|....+...|
T Consensus       310 ~~~skLs~LA~~v~-~idK----yR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AA  383 (559)
T KOG1155|consen  310 NDKSKLSYLAQNVS-NIDK----YRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAA  383 (559)
T ss_pred             hhhHHHHHHHHHHH-Hhcc----CCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHH
Confidence            2222221 122222 2222    24567888889999999999999999999987443 456899999999999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144          416 VEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL  495 (580)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  495 (580)
                      .+-++.+.+.+ +.|-..|-.+.++|.-.+.+.-|+-.|++..... +-|...|.+|..+|.+.++.++|++.|..+...
T Consensus       384 i~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~  461 (559)
T KOG1155|consen  384 IESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL  461 (559)
T ss_pred             HHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence            99999999876 5678899999999999999999999999998763 557889999999999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          496 GVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR----SC-KP-TEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       496 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +-. +...+..|+..|-+.++.++|...+++.++.    |. .| ......-|..-+.+.+++++|..+......-+
T Consensus       462 ~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~  537 (559)
T KOG1155|consen  462 GDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGE  537 (559)
T ss_pred             ccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCC
Confidence            633 6788999999999999999999999887753    22 22 23334447777889999999988877776554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.71  E-value=9.4e-17  Score=149.66  Aligned_cols=262  Identities=16%  Similarity=0.155  Sum_probs=109.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043144          296 IILRSMCSTGRWMDAERLLAEMVLKG-CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE  374 (580)
Q Consensus       296 ~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  374 (580)
                      .+...+...|++++|.++++...... .+.+...|..+.......++.+.|...++++...+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            44666778888888888886554433 2345566666777777788888999988888876544 55566667766 688


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144          375 KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH-CSPVLITYNTVIDGLSKVGKTEQAMKL  453 (580)
Q Consensus       375 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~  453 (580)
                      +++++|.++++...+.  .+++..+..++..+...++++++..+++.+.... .+++...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8889998888776654  3456667778888889999999999998877543 346677888888889999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 043144          454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK  533 (580)
Q Consensus       454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  533 (580)
                      +++.++.. +.|......++..+...|+.+++..++....+.. +.|+..+..++.+|...|++++|+..+++..+.. +
T Consensus       169 ~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  169 YRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            99998763 3357778888999999999999888888877543 2355677888999999999999999999988763 6


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          534 PTEATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      .|+.....++.++...|+.++|.++.+++.+
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            7888889999999999999999999888764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=1.9e-13  Score=125.66  Aligned_cols=411  Identities=14%  Similarity=0.103  Sum_probs=263.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCC
Q 043144          125 LIRGFCKVGKTRKATRVMEIVEDSGAVPD-VITYNVLISGYCRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGK  201 (580)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~  201 (580)
                      ..+-|.+.|.+++|++.|...+..  .|+ +.-|.....+|...|++++..+.-.+. .+.|+ +.++..-..++-+.|+
T Consensus       121 ~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~  198 (606)
T KOG0547|consen  121 KGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGK  198 (606)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhcc
Confidence            345578899999999999998876  455 777888889999999999988877666 55666 4467777788888888


Q ss_pred             hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH--------HHHHH-cC--CCCCHhHHHHHHHHHHhcC
Q 043144          202 LNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL--------DEMRN-KG--CIPDVVTYNVLVNGICKEG  270 (580)
Q Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~-~~--~~~~~~~~~~l~~~~~~~g  270 (580)
                      +++|+.-..-             .++...+....-.--+.+++        .+-.+ .+  .-|+.....+....+... 
T Consensus       199 ~~eal~D~tv-------------~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~-  264 (606)
T KOG0547|consen  199 FDEALFDVTV-------------LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD-  264 (606)
T ss_pred             HHHHHHhhhH-------------HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc-
Confidence            8887643222             12222221111111122222        22222 11  123333333333222110 


Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHHHHHcC---C---CCC------hhhHHHHHHHHH
Q 043144          271 RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS-TGRWMDAERLLAEMVLKG---C---SPS------VVTFNILINFLC  337 (580)
Q Consensus       271 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~---~---~~~------~~~~~~l~~~~~  337 (580)
                       +.      ..+...+-..|...-..+=..+.. ...+..|...+.+-....   .   ..|      ..+.......+.
T Consensus       265 -~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~f  337 (606)
T KOG0547|consen  265 -PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHF  337 (606)
T ss_pred             -cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhh
Confidence             00      000000000011000000000100 012333333332221110   0   011      112222223345


Q ss_pred             hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144          338 RKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVE  417 (580)
Q Consensus       338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  417 (580)
                      -.|+.-.|..-|+..+..... +...|--+...|....+.++-...|....+.++. ++.+|..-.+.+.-.+++++|..
T Consensus       338 L~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~a  415 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIA  415 (606)
T ss_pred             hcCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHH
Confidence            578999999999999987544 3333778888999999999999999999887554 55677777888888899999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144          418 ILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV  497 (580)
Q Consensus       418 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  497 (580)
                      -|+.....+ +.+...|--+.-+..+.++++++...|++.+++ ++--++.|+.....+...++++.|.+.|+..++..+
T Consensus       416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            999999876 334556666666667899999999999999886 566788999999999999999999999999987654


Q ss_pred             CC-----CHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          498 RP-----NVI--TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       498 ~~-----~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..     +..  +-.+++.. .-.+++.+|.+++.++.+.. +.....+..|+..-.+.|+.++|+++|++...
T Consensus       494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            31     121  12223322 23489999999999999763 55577899999999999999999999998754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.68  E-value=1.8e-16  Score=147.81  Aligned_cols=258  Identities=17%  Similarity=0.107  Sum_probs=63.0

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144           89 NHLRRLVRNGELEEGFKFLESMVYHG-DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL  167 (580)
Q Consensus        89 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (580)
                      .+...+.+.|++++|++++....... .+.+...|..+...+...++++.|...++++...+ +.++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence            33555566666666666665444332 23344445555555556666666666666665544 2244445555554 455


Q ss_pred             CChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144          168 GEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE-CYPDVITYTILIEATCKESGVGQAMKLLD  245 (580)
Q Consensus       168 g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~  245 (580)
                      +++++|.+++++. ...++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|++.++
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6666666655544 223444445555555555555555555555544321 12334444445555555555555555555


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144          246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS  325 (580)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  325 (580)
                      +.++..+. |....+.++..+...|+.+++.+++....+.. +.|...+..+..++...|+.++|..+|+...+.. +.|
T Consensus       171 ~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d  247 (280)
T PF13429_consen  171 KALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD  247 (280)
T ss_dssp             HHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred             HHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence            55544211 34444455555555555555444444443322 2233334444445555555555555555544432 234


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          326 VVTFNILINFLCRKGLLGRAIDILEK  351 (580)
Q Consensus       326 ~~~~~~l~~~~~~~g~~~~a~~~~~~  351 (580)
                      +.....+++++...|+.++|.++..+
T Consensus       248 ~~~~~~~a~~l~~~g~~~~A~~~~~~  273 (280)
T PF13429_consen  248 PLWLLAYADALEQAGRKDEALRLRRQ  273 (280)
T ss_dssp             HHHHHHHHHHHT--------------
T ss_pred             cccccccccccccccccccccccccc
Confidence            44444445555555555555544443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=3.4e-12  Score=119.90  Aligned_cols=448  Identities=13%  Similarity=0.056  Sum_probs=310.7

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      -+..+.+-+..+.++.-|+-+.+++...+  .|+.....++.++.-.|++..|..+...-.-.  ..|..+......++.
T Consensus        18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~   93 (611)
T KOG1173|consen   18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV   93 (611)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence            45566777778888989988888887654  45555566788888889998888877654322  467788888888899


Q ss_pred             hcCChhHHHHHHHH----c-CC---CCC--------cch-----------HHHHHHHHHhcCChhHHHHHHHHHHhCCCC
Q 043144          166 RLGEIDNALQVLER----M-SV---APD--------VVT-----------YNTILRTLCDSGKLNLAMEVLHKQLEKECY  218 (580)
Q Consensus       166 ~~g~~~~A~~~~~~----~-~~---~~~--------~~~-----------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  218 (580)
                      +..++++|..++..    . ++   +.|        ..-           +..-...|....+.++|...|.+++...+.
T Consensus        94 ~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~  173 (611)
T KOG1173|consen   94 KLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLADAK  173 (611)
T ss_pred             HHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhcchh
Confidence            99999999999882    2 11   111        100           111123455566778888888877765322


Q ss_pred             CChhhHHHHHHHHHh-----------------c-CCHhHHHHHHHHHHHc----------------CCCCCHhHHHHHHH
Q 043144          219 PDVITYTILIEATCK-----------------E-SGVGQAMKLLDEMRNK----------------GCIPDVVTYNVLVN  264 (580)
Q Consensus       219 ~~~~~~~~li~~~~~-----------------~-g~~~~A~~~~~~~~~~----------------~~~~~~~~~~~l~~  264 (580)
                       ....+-.++....-                 . .+.+.-+.+|+.....                +...++.......+
T Consensus       174 -c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad  252 (611)
T KOG1173|consen  174 -CFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD  252 (611)
T ss_pred             -hHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence             11122222221110                 0 1111122222211000                12224445555667


Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHH
Q 043144          265 GICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGR  344 (580)
Q Consensus       265 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  344 (580)
                      .+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+-.++.+. .|..+.+|-++.-.|...|..++
T Consensus       253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~se  330 (611)
T KOG1173|consen  253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSE  330 (611)
T ss_pred             HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHH
Confidence            7778899999999999987765 666667777777888888888777777777765 46677889999999988999999


Q ss_pred             HHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144          345 AIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN  424 (580)
Q Consensus       345 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  424 (580)
                      |++.|.+....+.. -...|-.+...|.-.|..|+|+..|...-+.- .-...-+.-+.--|.+.++++.|..+|.++..
T Consensus       331 ARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a  408 (611)
T KOG1173|consen  331 ARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA  408 (611)
T ss_pred             HHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence            99999987765332 34568888899999999999999988876631 11122233344467888999999999988887


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          425 KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK--GL---KP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       425 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~---~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      .. |.|+...+.+.-.....+.+.+|..+|+..+..  .+   .+ -..+++.|.++|.+.+.+++|+..+++.....++
T Consensus       409 i~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k  487 (611)
T KOG1173|consen  409 IA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK  487 (611)
T ss_pred             cC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence            65 556777888877777888999999999887621  01   11 2346888999999999999999999999887665


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144          499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI  546 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  546 (580)
                       +..++.+++..|...|+++.|++.|.+.+.  +.|+..+-..++..+
T Consensus       488 -~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  488 -DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA  532 (611)
T ss_pred             -chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence             888999999999999999999999999884  477776655555544

>TIGR00540 hemY_coli hemY protein

Probab=99.67  E-value=2.4e-13  Score=133.45  Aligned_cols=290  Identities=15%  Similarity=0.045  Sum_probs=197.1

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcc--hHHHHHHHHHhcCChhHH
Q 043144          129 FCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVV--TYNTILRTLCDSGKLNLA  205 (580)
Q Consensus       129 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~~~l~~~~~~~g~~~~A  205 (580)
                      ....|+++.|.+.+.+..+.. +.....+.....++.+.|+++.|.+.+.+. ...|+..  ........+...|+++.|
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A  172 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA  172 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence            357888888988888877654 222334445567777888888988888886 3335543  333457788888899999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 043144          206 MEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYN-VLVN---GICKEGRLDEAIKFLND  281 (580)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~~~  281 (580)
                      .+.++.+.+.. |-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-..   .....+..+++.+.+..
T Consensus       173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            88888888875 335667778888888899999999988888887643 333221 1111   11222333333334433


Q ss_pred             hhhCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          282 MPSYG---CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVT---FNILINFLCRKGLLGRAIDILEKMPKH  355 (580)
Q Consensus       282 ~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~  355 (580)
                      +.+..   .+.+...+..+...+...|+.++|.+.+++..+..  ||...   ...........++.+.+.+.+++..+.
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            33321   12377788888888899999999999999888863  33321   111222223457788888888887776


Q ss_pred             CCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144          356 GCTPNS--LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN  424 (580)
Q Consensus       356 ~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  424 (580)
                      .+. |+  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       329 ~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       329 VDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            332 45  566788888899999999999999533333467888888899999999999999999988643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=4.1e-14  Score=135.34  Aligned_cols=291  Identities=12%  Similarity=0.042  Sum_probs=212.3

Q ss_pred             CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043144          271 RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDI  348 (580)
Q Consensus       271 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~  348 (580)
                      +..+|+..|.++... +.-.......+..+|...+++++|.++|+.+.+..  ...+...|.+.+--+-+   .-+---+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~---~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD---EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh---hHHHHHH
Confidence            457788888885543 22333556677788888888888888888887652  11244566655543321   1111112


Q ss_pred             HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144          349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS  428 (580)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  428 (580)
                      -+.+.... +..+.+|.++.++|.-+++.+.|++.|++.++.++. ..++|+.+..-+.....+|.|...|+.....+ +
T Consensus       410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~  486 (638)
T KOG1126|consen  410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-P  486 (638)
T ss_pred             HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-c
Confidence            22333332 237788999999999999999999999998875322 56788888888888899999999998888644 2


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      .+...|..+...|.+.++++.|.-.|+++.+.+ +-+.+....+...+-+.|+.++|+++++++...++. |+..-...+
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~  564 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRA  564 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHH
Confidence            223445556777889999999999999998765 335667777888888999999999999999887766 544444556


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144          509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      ..+...+++++|+..++++.+. ++.+...+..++..|.+.|+.+.|..-|.-+.+..++...
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            6777889999999999998875 4555677888899999999999999999888887766654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.67  E-value=3.9e-13  Score=131.14  Aligned_cols=280  Identities=13%  Similarity=0.050  Sum_probs=131.7

Q ss_pred             cCChhHHHHHHHHcCC-CCCcchHHHH-HHHHHhcCChhHHHHHHHHHHhCCCCCChhhH--HHHHHHHHhcCCHhHHHH
Q 043144          167 LGEIDNALQVLERMSV-APDVVTYNTI-LRTLCDSGKLNLAMEVLHKQLEKECYPDVITY--TILIEATCKESGVGQAMK  242 (580)
Q Consensus       167 ~g~~~~A~~~~~~~~~-~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~  242 (580)
                      .|++++|.+.+.+... .+++..+..+ ..+..+.|+++.|...+.++.+..  |+....  ......+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~--~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA--DNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            5666666666665521 1122222222 333356666666666666665543  332211  123455666666666666


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH-------HHHHHHHHHHhcCChHHHHHHHH
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVI-------THNIILRSMCSTGRWMDAERLLA  315 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~~~~~~~a~~~~~  315 (580)
                      .++.+.+..+. ++.....+...|.+.|++++|.+++..+.+.+..++..       +|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            66666665422 45566666666666777777776666666554322111       11111222222222233333333


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144          316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD  395 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  395 (580)
                      .+.+. .+.++.....+...+...|+.++|.+++++..+.  ++++..  .++.+....++.++++...+...+..+. |
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-~  327 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-T  327 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-C
Confidence            33221 1224444444555555555555555555554442  222211  1122222334555555555554444221 3


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEM  457 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  457 (580)
                      ...+..+...+.+.+++++|.+.|+.+.+..  |+...+..+...+.+.|+.++|.+++++-
T Consensus       328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~--P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQR--PDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3344445555555555555555555554433  44444445555555555555555555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=1.1e-12  Score=114.51  Aligned_cols=293  Identities=19%  Similarity=0.187  Sum_probs=196.8

Q ss_pred             cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh------hhHHHHHHHHHhcCCH
Q 043144          269 EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV------VTFNILINFLCRKGLL  342 (580)
Q Consensus       269 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~  342 (580)
                      .++.++|.++|-+|.+.+ +.+..+..++.+.|.+.|..+.|+++...+.+.   ||.      .....|.+-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            456678888888777643 334455566777777888888888888777764   232      2344566677788888


Q ss_pred             HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHH
Q 043144          343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV----TYNTLLTALCKDGKVDVAVEI  418 (580)
Q Consensus       343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~li~~~~~~g~~~~A~~~  418 (580)
                      |.|+.+|..+.+.+.. -......|+..|-..++|++|+++-+++.+.+..+...    .|.-+...+....+.+.|...
T Consensus       124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            8888888877764322 44566777888888888888888888877765544332    455566666667788888888


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      +.+..+.+ +..+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+.++.+....
T Consensus       203 l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         203 LKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            88887765 22233334556677788888888888888887754444567777888888888888888888888765433


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHhCCCCCch
Q 043144          499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA---YEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      ++  .-..+...-....-.+.|...+.+-+.+  .|+...+..++..-.   ..|...+-...++.|....+...+
T Consensus       282 ~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~  353 (389)
T COG2956         282 AD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP  353 (389)
T ss_pred             cc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence            33  3334444334444556666666666654  678887877777653   345566777777777665544433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=3e-12  Score=111.95  Aligned_cols=285  Identities=16%  Similarity=0.143  Sum_probs=181.7

Q ss_pred             cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhcCCH
Q 043144          199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD------VVTYNVLVNGICKEGRL  272 (580)
Q Consensus       199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~  272 (580)
                      ..+.++|.+.|-+|.+.. +.+..+-.+|.+.|.+.|..|.|+++.+.+.+.   ||      ......|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            456667777777766643 224445556677777777777777777777654   33      22344566777778888


Q ss_pred             HHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHH
Q 043144          273 DEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV----VTFNILINFLCRKGLLGRAIDI  348 (580)
Q Consensus       273 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~  348 (580)
                      |.|..+|..+.+.+ ..-......++..|-...+|++|+..-+++.+.+-.+..    ..|..|...+....+++.|..+
T Consensus       124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            88888888877644 334455667777788888888888887777766433221    2445556666667778888888


Q ss_pred             HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144          349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS  428 (580)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  428 (580)
                      +.+..+.+.. .+..--.+.......|+++.|.+.++.+.+.++.--..+...|..+|.+.|+.++...++..+.+....
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g  281 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG  281 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence            8887776333 334444556777788888888888888877644333446777778888888888888888777766533


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---hCCCHHHHHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS---REGKVDEAIKLFHDLE  493 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~  493 (580)
                      +  ..-..+.+.-....-.+.|...+.+-+..  +|+...+..++..-.   ..|...+.+..++.|.
T Consensus       282 ~--~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv  345 (389)
T COG2956         282 A--DAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV  345 (389)
T ss_pred             c--cHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence            3  33333333333344445555555554443  577777777776553   3344556666666664

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=2.1e-13  Score=130.52  Aligned_cols=284  Identities=12%  Similarity=0.045  Sum_probs=223.5

Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144          235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG--CQPNVITHNIILRSMCSTGRWMDAER  312 (580)
Q Consensus       235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~  312 (580)
                      -+..+|...|..+..+- .-...+...+..+|...+++++|..+|+.+.+..  ...+...|.+.+..+-   +. -++.
T Consensus       333 y~~~~A~~~~~klp~h~-~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq---~~-v~Ls  407 (638)
T KOG1126|consen  333 YNCREALNLFEKLPSHH-YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQ---DE-VALS  407 (638)
T ss_pred             HHHHHHHHHHHhhHHhc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHH---hh-HHHH
Confidence            45678999999866552 2234566778899999999999999999988642  1235566777665442   11 2222


Q ss_pred             H-HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 043144          313 L-LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG  391 (580)
Q Consensus       313 ~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  391 (580)
                      . -+.+... -+..+.+|.++.++|.-+++.+.|++.|++..+.+.. ...+|+.+..-+.....+|.|...|+..+.. 
T Consensus       408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-  484 (638)
T KOG1126|consen  408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV-  484 (638)
T ss_pred             HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC-
Confidence            2 2333333 2557789999999999999999999999999987433 6788998988899999999999999998764 


Q ss_pred             CCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144          392 CYPDIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYS  470 (580)
Q Consensus       392 ~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~  470 (580)
                       .|..+ .|..+...|.+.++++.|.-.|+.+.+.+ +.+.+....+...+.+.|+.++|+++++++...+. -|+..--
T Consensus       485 -~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~-kn~l~~~  561 (638)
T KOG1126|consen  485 -DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDP-KNPLCKY  561 (638)
T ss_pred             -CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCC-CCchhHH
Confidence             44444 88889999999999999999999999877 44566667778888899999999999999987653 3555555


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ..+..+...+++++|+..++++.+.-++ +...+..++..|.+.|+.+.|+.-|--+.+.
T Consensus       562 ~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            5677888899999999999999986544 6778889999999999999999999888765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.61  E-value=3.5e-10  Score=107.98  Aligned_cols=469  Identities=11%  Similarity=0.040  Sum_probs=272.5

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYH-GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      ..|...+..+..+|+...-...|+.++.. .+.-...+|...+......|-++-+..++++.++..    +..-+-.+..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence            57888999999999999999999999876 333456789999998899999999999999988753    4446677888


Q ss_pred             HHhcCChhHHHHHHHHc---------CCCCCcchHHHHHHHHHhcCChhH---HHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043144          164 YCRLGEIDNALQVLERM---------SVAPDVVTYNTILRTLCDSGKLNL---AMEVLHKQLEKECYPDVITYTILIEAT  231 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~~~~~~~~li~~~  231 (580)
                      ++..++.++|-+.+...         ..+.+...|..+-...++.-+.-.   ...+++.+...-...-...|++|++.|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            89999999999998887         123344567776666666543332   333444444332111245789999999


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC----------------------CHHHHHHHHHHhhhCC---
Q 043144          232 CKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG----------------------RLDEAIKFLNDMPSYG---  286 (580)
Q Consensus       232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------------------~~~~A~~~~~~~~~~~---  286 (580)
                      .+.|.+++|.++|++....  ...+.-|..+.+.|..-.                      +++-.+..|+.+....   
T Consensus       259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~  336 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLL  336 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchH
Confidence            9999999999999998765  223444444444444211                      1122222333322110   


Q ss_pred             --------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          287 --------CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP------SVVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       287 --------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                              -+.++..|..-+..  ..|+..+-...|.++... +.|      -...|..+.+.|-..|+++.|..+|++.
T Consensus       337 lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka  413 (835)
T KOG2047|consen  337 LNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA  413 (835)
T ss_pred             HHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence                    02233344333322  245555666666666653 122      1235777777888888888888888877


Q ss_pred             hhCCCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CHHHHHHHHHHHHhcCCh
Q 043144          353 PKHGCTPN---SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP-----------------DIVTYNTLLTALCKDGKV  412 (580)
Q Consensus       353 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-----------------~~~~~~~li~~~~~~g~~  412 (580)
                      .+-..+--   ..+|......=.++.+++.|+.+.+......-.|                 +...|...++..-..|-+
T Consensus       414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            76533311   2345555555566777777877777665431111                 112344444445555666


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHh---CCCHHHHHHH
Q 043144          413 DVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSR---EGKVDEAIKL  488 (580)
Q Consensus       413 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~A~~~  488 (580)
                      +....+++.+....+.. +..--.....+..+.-++++.+++++-+..-..|+. ..|+..+.-+.+   ...++.|..+
T Consensus       494 estk~vYdriidLriaT-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL  572 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIAT-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL  572 (835)
T ss_pred             HHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            66666666666654321 111111222233455566676666665444223443 345555544432   2246677777


Q ss_pred             HHHHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          489 FHDLERLGVRPNVI--TYNSIMLGLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       489 ~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      |+++.+.- +|...  .|......--..|-...|+.+++++... +++.  ...|+..+.-....=-...-+.+++++++
T Consensus       573 FEqaL~~C-pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe  650 (835)
T KOG2047|consen  573 FEQALDGC-PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIE  650 (835)
T ss_pred             HHHHHhcC-CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHH
Confidence            77776632 23322  1222222223456666677777765543 2332  22444444433333334455666666666


Q ss_pred             C
Q 043144          565 R  565 (580)
Q Consensus       565 ~  565 (580)
                      .
T Consensus       651 ~  651 (835)
T KOG2047|consen  651 S  651 (835)
T ss_pred             h
Confidence            5

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.61  E-value=1.1e-11  Score=111.83  Aligned_cols=287  Identities=14%  Similarity=0.118  Sum_probs=183.2

Q ss_pred             cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043144          269 EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDI  348 (580)
Q Consensus       269 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  348 (580)
                      .|++.+|.....+-.+.+ ......|..-..+.-..|+.+.+-.++.++.+..-.++........+.....|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            566777776666655544 2233344444555566677777777776666552234444555556666667777777766


Q ss_pred             HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 043144          349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-------VTYNTLLTALCKDGKVDVAVEILNQ  421 (580)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~  421 (580)
                      +.++.+.++. ++........+|.+.|++.....+...+.+.+.-.|.       .+|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            6666665443 5566666667777777777777777777666654333       2455566555555555555555655


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 043144          422 LSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV  501 (580)
Q Consensus       422 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  501 (580)
                      ....- ..++..-.+++.-+.+.|+.++|.++..+..+++..|.    -...-.+.+-++.+.-++..++..+..+. ++
T Consensus       255 ~pr~l-r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p  328 (400)
T COG3071         255 QPRKL-RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP  328 (400)
T ss_pred             ccHHh-hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence            54322 23344555667777778888888888877777655444    12223455667777666666666544332 45


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      ..+.+|...|.+.+.|.+|.+.|+..++.  .|+..+|..+++++.+.|+..+|.+..++....
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            67777888888888888888888877754  678888888888888888888888887776633

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.59  E-value=1.6e-09  Score=103.59  Aligned_cols=319  Identities=14%  Similarity=0.100  Sum_probs=193.7

Q ss_pred             cCCHhHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC---HHHHHHHHHHHHhc
Q 043144          234 ESGVGQAMKLLDEMRNKGCIPD------VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN---VITHNIILRSMCST  304 (580)
Q Consensus       234 ~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~  304 (580)
                      .|+..+-...|.++... +.|.      -..|..+...|-..|+++.|..+|++..+-..+.-   ..+|......-.+.
T Consensus       360 e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh  438 (835)
T KOG2047|consen  360 EGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRH  438 (835)
T ss_pred             cCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhh
Confidence            35566666666666543 1221      23577788888888888888888888776432221   23455555555567


Q ss_pred             CChHHHHHHHHHHHHcC-----------CCC------ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043144          305 GRWMDAERLLAEMVLKG-----------CSP------SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPV  367 (580)
Q Consensus       305 ~~~~~a~~~~~~~~~~~-----------~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  367 (580)
                      .+++.|+++.+.+....           .++      +...|...++.--..|-++....+++++++..+. ++...-..
T Consensus       439 ~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~Ny  517 (835)
T KOG2047|consen  439 ENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINY  517 (835)
T ss_pred             hhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            77888888777765321           111      2334555666666678888888888888877554 33322222


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHH--HHHHHHHH
Q 043144          368 LHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTALCK---DGKVDVAVEILNQLSNKHCSPVLIT--YNTVIDGL  441 (580)
Q Consensus       368 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~--~~~l~~~~  441 (580)
                      .-.+-.+.-++++.++|++-+..-..|... .|+..+.-+.+   ...++.|..+|++..+ +++|...-  |......-
T Consensus       518 AmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE  596 (835)
T KOG2047|consen  518 AMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE  596 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence            233344555788888888766554445554 66666555443   2367889999998888 54544322  22222333


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHHHHHhcCC
Q 043144          442 SKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVI---TYNSIMLGLCKARQ  516 (580)
Q Consensus       442 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~  516 (580)
                      .+.|....|+.++++.... +++.  ...|+.+|.--...=-+.....+|+++++.-  |+..   ........-++.|.
T Consensus       597 Ee~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L--p~~~~r~mclrFAdlEtklGE  673 (835)
T KOG2047|consen  597 EEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL--PDSKAREMCLRFADLETKLGE  673 (835)
T ss_pred             HHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC--ChHHHHHHHHHHHHHhhhhhh
Confidence            3568888888888886653 3333  2457766654444434555677777777642  3332   22334455667899


Q ss_pred             HHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144          517 TYRAIDILADMVTRSCKP--TEATYTILIEGIAYEGLAKEALDLL  559 (580)
Q Consensus       517 ~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~  559 (580)
                      .++|+.++.-..+-. +|  +...|...=..=.++|+-+...+.+
T Consensus       674 idRARaIya~~sq~~-dPr~~~~fW~twk~FEvrHGnedT~keML  717 (835)
T KOG2047|consen  674 IDRARAIYAHGSQIC-DPRVTTEFWDTWKEFEVRHGNEDTYKEML  717 (835)
T ss_pred             HHHHHHHHHhhhhcC-CCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999887766542 33  4567777777678888855444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=1.3e-10  Score=109.56  Aligned_cols=433  Identities=13%  Similarity=0.019  Sum_probs=304.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhc
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDS  199 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~  199 (580)
                      -+..+++-+..+.++..|.-+-+++...+  .|+...--+++++.-.|+++.|..+...- -...|..+.......+.+.
T Consensus        18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~~l   95 (611)
T KOG1173|consen   18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLVKL   95 (611)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHH
Confidence            34455555667777888888888887765  44444455788888899999999888765 2346778888889999999


Q ss_pred             CChhHHHHHHHHHHhC-------------CCCCChhh-----------HHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 043144          200 GKLNLAMEVLHKQLEK-------------ECYPDVIT-----------YTILIEATCKESGVGQAMKLLDEMRNKGCIPD  255 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~-------------~~~~~~~~-----------~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  255 (580)
                      .+++.|..++......             -+.+|..-           +..-...|....+.++|...|.+....    |
T Consensus        96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~----D  171 (611)
T KOG1173|consen   96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA----D  171 (611)
T ss_pred             HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc----c
Confidence            9999999988722100             01111111           011112244556778888888877654    3


Q ss_pred             HhHHHH---HHHHHHh-----------------cCCHHHH-HHHHHH----hhh------------CCCCCCHHHHHHHH
Q 043144          256 VVTYNV---LVNGICK-----------------EGRLDEA-IKFLND----MPS------------YGCQPNVITHNIIL  298 (580)
Q Consensus       256 ~~~~~~---l~~~~~~-----------------~g~~~~A-~~~~~~----~~~------------~~~~~~~~~~~~ll  298 (580)
                      +..+..   ++....-                 .+...+- ..+|+-    +..            .+...+........
T Consensus       172 ~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~a  251 (611)
T KOG1173|consen  172 AKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKA  251 (611)
T ss_pred             hhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHH
Confidence            333332   2221110                 1111111 112221    000            11233444455556


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043144          299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMD  378 (580)
Q Consensus       299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  378 (580)
                      .-+...+++.+..++.+.+.+.. ++....+..-|.++...|+..+-..+=.++.+.- +..+.+|-++.--|...|..+
T Consensus       252 d~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~s  329 (611)
T KOG1173|consen  252 DRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYS  329 (611)
T ss_pred             HHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcH
Confidence            66778899999999999999874 5566666666778888888877777766777653 337789999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144          379 RAIEYLEIMVSRGCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEM  457 (580)
Q Consensus       379 ~A~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  457 (580)
                      +|.+.|.+....  .|. ...|..+...|+-.|..++|...+..+.+.-..- ..-+..+.--|.+.++.+.|.++|.+.
T Consensus       330 eARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~-hlP~LYlgmey~~t~n~kLAe~Ff~~A  406 (611)
T KOG1173|consen  330 EARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGC-HLPSLYLGMEYMRTNNLKLAEKFFKQA  406 (611)
T ss_pred             HHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCC-cchHHHHHHHHHHhccHHHHHHHHHHH
Confidence            999999988754  333 3489999999999999999999988876543111 111333555678899999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144          458 RTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL----GVR-P-NVITYNSIMLGLCKARQTYRAIDILADMVTRS  531 (580)
Q Consensus       458 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  531 (580)
                      .... +-|+..++-+.-.....+.+.+|..+|+.....    +.+ + -..+++.|+.+|.+.+.+++|+..+++.+...
T Consensus       407 ~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~  485 (611)
T KOG1173|consen  407 LAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS  485 (611)
T ss_pred             HhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence            8764 457778888887778889999999999988621    111 1 24568899999999999999999999999874


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          532 CKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       532 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                       +.+..++..++-+|...|+++.|.+.|.+.....
T Consensus       486 -~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~  519 (611)
T KOG1173|consen  486 -PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK  519 (611)
T ss_pred             -CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence             8889999999999999999999999999988754

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.57  E-value=4.6e-11  Score=107.99  Aligned_cols=287  Identities=16%  Similarity=0.163  Sum_probs=203.2

Q ss_pred             cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144          234 ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERL  313 (580)
Q Consensus       234 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  313 (580)
                      .|++.+|+++..+..+.+.. ....|..-+.+.-+.|+.+.+-.++.+..+..-.++.....+..+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            57888888888777666533 24445555566667788888888888777653245555666666777778888888887


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH-------hhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          314 LAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS-------LSYNPVLHGFCKEKKMDRAIEYLEI  386 (580)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~  386 (580)
                      ..++.+.+ +.++.......++|.+.|++.....++..+.+.+.-.+.       .+|..++.-....+..+.-...|+.
T Consensus       176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            77777765 446667777788888888888888888888777655443       2455556555555556665666666


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 043144          387 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT  466 (580)
Q Consensus       387 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~  466 (580)
                      .... .+.++..-..++.-+.++|+.++|.++..+..+....|..    ...-.+.+-++.+.-.+..++-.+.. +.++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQH-PEDP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhC-CCCh
Confidence            5443 3446667777788888888888888888888877755541    12223456677777777777666542 3455


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ..+.+|...|.+.+.+.+|...|+...+.  .|+..+|+.+..++.+.|+..+|.++.++.+..
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            77888888888888888888888877664  578888888888888888888888888887643

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.55  E-value=1.8e-10  Score=112.50  Aligned_cols=430  Identities=13%  Similarity=0.050  Sum_probs=237.0

Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCC--C-CcchHHH
Q 043144          116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVA--P-DVVTYNT  191 (580)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~--~-~~~~~~~  191 (580)
                      ..|..+|..+.-++...|++..+.+.|++....- .-....|..+...|...|.-..|..+.+.. +..  | |...+-.
T Consensus       320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm  398 (799)
T KOG4162|consen  320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM  398 (799)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence            3455666666666666666666666666665432 334455666666666666666666666654 222  2 2333333


Q ss_pred             HHHHHH-hcCChhHHHHHHHHHHhC--CCC--CChhhHHHHHHHHHh-----------cCCHhHHHHHHHHHHHcCCCCC
Q 043144          192 ILRTLC-DSGKLNLAMEVLHKQLEK--ECY--PDVITYTILIEATCK-----------ESGVGQAMKLLDEMRNKGCIPD  255 (580)
Q Consensus       192 l~~~~~-~~g~~~~A~~~~~~~~~~--~~~--~~~~~~~~li~~~~~-----------~g~~~~A~~~~~~~~~~~~~~~  255 (580)
                      ....|. +.+.+++++.+-.+++..  +..  .....+..+.-+|..           .....++.+.+++..+.+.. |
T Consensus       399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-d  477 (799)
T KOG4162|consen  399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-D  477 (799)
T ss_pred             HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-C
Confidence            333333 345556666655555541  100  112223333322221           11223455555555554322 2


Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043144          256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF  335 (580)
Q Consensus       256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  335 (580)
                      +.+..-+.--|+..++++.|.+...+..+.+-..+...|..+.-.+...+++.+|+.+.+...+.- +.|......-+..
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i  556 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHI  556 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhh
Confidence            222222333445566666666666666655434556666666666666666666666666555431 1111111112222


Q ss_pred             HHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcC---
Q 043144          336 LCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR--GCYPDIVTYNTLLTALCKDG---  410 (580)
Q Consensus       336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g---  410 (580)
                      -...++.+++...+..++..        |... ....+.++-....+....+.-.  ...-...++..+.......+   
T Consensus       557 ~~~~~~~e~~l~t~~~~L~~--------we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~  627 (799)
T KOG4162|consen  557 ELTFNDREEALDTCIHKLAL--------WEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA  627 (799)
T ss_pred             hhhcccHHHHHHHHHHHHHH--------HHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence            22345555555555444331        0000 0000111111112221111100  01111122222222221111   


Q ss_pred             ChHHHHHHHHHHHhCCCC--CC------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144          411 KVDVAVEILNQLSNKHCS--PV------LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV  482 (580)
Q Consensus       411 ~~~~A~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  482 (580)
                      ..+..      +......  |+      ...|......+.+.++.++|..++.+..... +-....|......+...|..
T Consensus       628 ~se~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~  700 (799)
T KOG4162|consen  628 GSELK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQL  700 (799)
T ss_pred             ccccc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhh
Confidence            11111      1111111  22      2346667778889999999999999887653 44566677777788899999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAID--ILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN  560 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  560 (580)
                      ++|.+.|..+...++. ++....+++.++...|+..-|..  ++.++++.+ +.+...|..++..+.+.|+.++|.+.|.
T Consensus       701 ~EA~~af~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  701 EEAKEAFLVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             HHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            9999999999887655 67788999999999998877777  999999875 7789999999999999999999999999


Q ss_pred             HHHhCC
Q 043144          561 QLCSRG  566 (580)
Q Consensus       561 ~~~~~g  566 (580)
                      ...+.-
T Consensus       779 aa~qLe  784 (799)
T KOG4162|consen  779 AALQLE  784 (799)
T ss_pred             HHHhhc
Confidence            987653

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.54  E-value=1.1e-09  Score=105.04  Aligned_cols=460  Identities=13%  Similarity=0.138  Sum_probs=301.5

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      |..++. +...+++...++..+.++.. .+....+.....-.+...|+.++|....+.....+ ..+.++|..++-.+..
T Consensus        11 F~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~   87 (700)
T KOG1156|consen   11 FRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS   87 (700)
T ss_pred             HHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence            333343 34567999999999999884 56666666666666788999999999998888766 6678899999999988


Q ss_pred             cCChhHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          167 LGEIDNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      ..++++|+..|..+ .+.| |...|.-+.-.-++.++++.....-...++.. +.....|..++.++.-.|++..|..++
T Consensus        88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il  166 (700)
T KOG1156|consen   88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL  166 (700)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999988 4444 56678888777888899998888887777754 335667888888888999999999999


Q ss_pred             HHHHHcC-CCCCHhHHHHHH------HHHHhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 043144          245 DEMRNKG-CIPDVVTYNVLV------NGICKEGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAE  316 (580)
Q Consensus       245 ~~~~~~~-~~~~~~~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~  316 (580)
                      ++..+.. ..|+...+....      ....+.|..++|++.+..-...  ..|-. .-..-...+.+.+++++|..++..
T Consensus       167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~  244 (700)
T KOG1156|consen  167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRR  244 (700)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence            9987653 245555554322      3456788888888887765432  12222 223445567889999999999999


Q ss_pred             HHHcCCCCChhhHHHHHH-HHHh-cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCC
Q 043144          317 MVLKGCSPSVVTFNILIN-FLCR-KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK-MDRAIEYLEIMVSRGCY  393 (580)
Q Consensus       317 ~~~~~~~~~~~~~~~l~~-~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~  393 (580)
                      ++..  .||...|...+. ++.+ .+..+....+|....+.  .|-...-..+--....... .+..-.++....+.|+.
T Consensus       245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p  320 (700)
T KOG1156|consen  245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP  320 (700)
T ss_pred             HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence            9987  466666555444 4433 33333333666655443  1111111111111111122 33344555666666654


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHH----HHHHHHhCC----------CCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHH
Q 043144          394 PDIVTYNTLLTALCKDGKVDVAVE----ILNQLSNKH----------CSPVLITY--NTVIDGLSKVGKTEQAMKLLEEM  457 (580)
Q Consensus       394 ~~~~~~~~li~~~~~~g~~~~A~~----~~~~~~~~~----------~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m  457 (580)
                      +   ++..+...|-.....+-..+    +...+...+          -+|....|  ..++..+-+.|+++.|...++..
T Consensus       321 ~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A  397 (700)
T KOG1156|consen  321 S---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA  397 (700)
T ss_pred             c---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3   23333333332221111111    111111111          14555444  44677788999999999999998


Q ss_pred             HHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---
Q 043144          458 RTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK---  533 (580)
Q Consensus       458 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---  533 (580)
                      +.+  .|+ .+.|..=.+.+...|++++|...+++..+.+. +|...-.--+.-..++.+.++|.++.....+.|..   
T Consensus       398 IdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~  474 (700)
T KOG1156|consen  398 IDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVN  474 (700)
T ss_pred             hcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhh
Confidence            875  444 34565666788999999999999999987753 35544435556667889999999998888776531   


Q ss_pred             ---CCHHHHHHH--HHHHHhcCCHHHHHHHHHHH
Q 043144          534 ---PTEATYTIL--IEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       534 ---~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~  562 (580)
                         .-.-.|..+  +.+|.+.|++..|.+=+..+
T Consensus       475 ~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  475 NLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             hHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence               012234443  56788888888887655544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.52  E-value=2.1e-09  Score=103.16  Aligned_cols=429  Identities=13%  Similarity=0.117  Sum_probs=292.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144          120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC  197 (580)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~  197 (580)
                      ..|...+. +...+++...+...+.+.+. .+....+....+-.+...|+-++|.......  +...+.+.|..++-.+-
T Consensus         9 ~lF~~~lk-~yE~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen    9 ALFRRALK-CYETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHH-HHHHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHh
Confidence            34444454 45667888999999988884 3666677776777777899999999988776  44566789999999999


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144          198 DSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK  277 (580)
Q Consensus       198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  277 (580)
                      ...++++|++.|+.++..+ +.|...|..+.-.-.+.|+++.....-....+.. +.....|..++.++.-.|+...|..
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999876 3467788888888888899998888888777653 2256678888888899999999999


Q ss_pred             HHHHhhhCC-CCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043144          278 FLNDMPSYG-CQPNVITHNIIL------RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILE  350 (580)
Q Consensus       278 ~~~~~~~~~-~~~~~~~~~~ll------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  350 (580)
                      ++++..+.. -.|+...+....      ......|..++|.+.+...... +......-..-...+.+.+++++|..++.
T Consensus       165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~  243 (700)
T KOG1156|consen  165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYR  243 (700)
T ss_pred             HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHH
Confidence            999987654 245655554332      2345678888888776655432 11122233445677889999999999999


Q ss_pred             HhhhCCCCCCHhhHHHHH-HHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHHHHHHHHHHhCCC
Q 043144          351 KMPKHGCTPNSLSYNPVL-HGFCKEKKMDRAI-EYLEIMVSRGCYPDIVTYNTLLTALCKDGK-VDVAVEILNQLSNKHC  427 (580)
Q Consensus       351 ~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~  427 (580)
                      .++..  .||...|.... .++.+-.+.-++. .+|....+.  .|.......+--......+ .+..-.++....+.|+
T Consensus       244 ~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~  319 (700)
T KOG1156|consen  244 RLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGV  319 (700)
T ss_pred             HHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCC
Confidence            99987  45666665555 4443344444444 677766553  2222211111111112222 2334455566666665


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----H----CC----------CCCCHHHH--HHHHHHHHhCCCHHHHHH
Q 043144          428 SPVLITYNTVIDGLSKVGKTEQAMKLLEEMR----T----KG----------LKPDTITY--SSLVGGLSREGKVDEAIK  487 (580)
Q Consensus       428 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~----~----~~----------~~p~~~~~--~~l~~~~~~~g~~~~A~~  487 (580)
                      ++   ++..+...|-.-...+    ++++..    .    .|          -+|....|  -.++..+-..|+++.|..
T Consensus       320 p~---vf~dl~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~  392 (700)
T KOG1156|consen  320 PS---VFKDLRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALE  392 (700)
T ss_pred             Cc---hhhhhHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHH
Confidence            44   2333444333222111    222221    1    11          14555444  467788899999999999


Q ss_pred             HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          488 LFHDLERLGVRPN-VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       488 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +++.+++.-  |+ +..|..-++.+...|++++|..++++..+.. .+|...-..-+.-..+.++.++|.++.....+.|
T Consensus       393 yId~AIdHT--PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~  469 (700)
T KOG1156|consen  393 YIDLAIDHT--PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREG  469 (700)
T ss_pred             HHHHHhccC--chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence            999998753  44 4566666788999999999999999998764 5555544466666789999999999999999988


Q ss_pred             C
Q 043144          567 V  567 (580)
Q Consensus       567 ~  567 (580)
                      .
T Consensus       470 ~  470 (700)
T KOG1156|consen  470 F  470 (700)
T ss_pred             c
Confidence            6

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.52  E-value=5.4e-10  Score=99.15  Aligned_cols=418  Identities=14%  Similarity=0.125  Sum_probs=249.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      +...+.+.|++++|+..+..+.+. ..++...+..++-++.-.|.+.+|..+-...     +.++.....|....-+.++
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka-----~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQYIEAKSIAEKA-----PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHHHHHHHHHhhC-----CCChHHHHHHHHHHHHhCc
Confidence            345677899999999999998875 5567778888888889999999999887654     3344445556677777888


Q ss_pred             hhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHH-HHHHHHhcCCHhHHHHHHHHHH
Q 043144          170 IDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTI-LIEATCKESGVGQAMKLLDEMR  248 (580)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~~  248 (580)
                      -++-..+-+.++  ....---+|.......-.+.+|+++|.+.+..+  |+-...+. +.-+|.+..-++-+.++++-.+
T Consensus       137 Ek~~~~fh~~Lq--D~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL  212 (557)
T KOG3785|consen  137 EKRILTFHSSLQ--DTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYL  212 (557)
T ss_pred             HHHHHHHHHHHh--hhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            777777777663  222344556666666677999999999998865  55555554 3445778888888999988877


Q ss_pred             HcCCCCCHhHHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHHcC
Q 043144          249 NKGCIPDVVTYNVLVNGICK--EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST-----GRWMDAERLLAEMVLKG  321 (580)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~  321 (580)
                      +. ++.+....|..+....+  .|+.  |.+-..++.+.+-..    | ..+.-.++.     .+-+.|++++-.+.+. 
T Consensus       213 ~q-~pdStiA~NLkacn~fRl~ngr~--ae~E~k~ladN~~~~----~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~-  283 (557)
T KOG3785|consen  213 RQ-FPDSTIAKNLKACNLFRLINGRT--AEDEKKELADNIDQE----Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH-  283 (557)
T ss_pred             Hh-CCCcHHHHHHHHHHHhhhhccch--hHHHHHHHHhccccc----c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh-
Confidence            66 23345566655544443  3433  222233333221111    0 111122222     3345566666555443 


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-------CHHHHHHHHHHHHHCCCCC
Q 043144          322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-------KMDRAIEYLEIMVSRGCYP  394 (580)
Q Consensus       322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~~~~  394 (580)
                       -|  ..-..|+-.|.+.+++.+|..+.+++...    ++.-|-.-.-.++..|       ...-|.+.|+.+-+.+..-
T Consensus       284 -IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec  356 (557)
T KOG3785|consen  284 -IP--EARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC  356 (557)
T ss_pred             -Ch--HhhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc
Confidence             12  23334555677788888888777665432    2222222222223332       2344555555544444333


Q ss_pred             CHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 043144          395 DIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITY-SSL  472 (580)
Q Consensus       395 ~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~l  472 (580)
                      |.. .-.++...+.-..++++.+..+..+.......|...+| +.++++..|++.+|.++|-......++ |..+| ..|
T Consensus       357 DTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~L  434 (557)
T KOG3785|consen  357 DTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSML  434 (557)
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHH
Confidence            322 34445555555667777777777777655444444443 567777788888888887665533333 34444 445


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043144          473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY  539 (580)
Q Consensus       473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  539 (580)
                      ..+|.+++..+.|+.++-++...  .........++.-|.+.+++--|.+.|+.+...  .|++.-|
T Consensus       435 ArCyi~nkkP~lAW~~~lk~~t~--~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  435 ARCYIRNKKPQLAWDMMLKTNTP--SERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             HHHHHhcCCchHHHHHHHhcCCc--hhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            56777888888777776554321  112223344456677777777777777666543  4555444

>PRK12370 invasion protein regulator; Provisional

Probab=99.50  E-value=1.4e-11  Score=125.78  Aligned_cols=266  Identities=10%  Similarity=0.044  Sum_probs=186.3

Q ss_pred             CCChhhHHHHHHHH--H---hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHc-
Q 043144          116 IPDIIPCTSLIRGF--C---KVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR---------LGEIDNALQVLERM-  180 (580)
Q Consensus       116 ~~~~~~~~~l~~~~--~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~-  180 (580)
                      +.+...|...+.+-  .   ..+++++|..+|++..+.. |.+...|..+..+|..         .+++++|...++++ 
T Consensus       253 ~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        253 LNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            34444444444442  1   2356889999999999876 5566677777766542         24478999999988 


Q ss_pred             CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHH
Q 043144          181 SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY  259 (580)
Q Consensus       181 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  259 (580)
                      .. |.+..++..++..+...|++++|...|+++++.+ +.+...+..+...+...|++++|...++.+.+..+. +...+
T Consensus       332 ~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        332 ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            33 4467788888899999999999999999999876 335667888888999999999999999999887533 23333


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc
Q 043144          260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRK  339 (580)
Q Consensus       260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  339 (580)
                      ..++..+...|++++|+..++++.....+.+...+..+..++...|++++|...+.++.... +.+....+.+...|...
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  488 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhcc
Confidence            44455566789999999999998765322245557777888889999999999998876552 23344556666677777


Q ss_pred             CCHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144          340 GLLGRAIDILEKMPKHG-CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR  390 (580)
Q Consensus       340 g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  390 (580)
                      |  +.+...++.+.+.. ..+....+  +-..+.-.|+.+.+..+ +++.+.
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence            7  47777777766531 11122222  44455566777777766 777665

>PRK12370 invasion protein regulator; Provisional

Probab=99.50  E-value=5.4e-11  Score=121.42  Aligned_cols=268  Identities=15%  Similarity=0.068  Sum_probs=189.8

Q ss_pred             CCHHHHHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHhhh
Q 043144          289 PNVITHNIILRSMCS-----TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR---------KGLLGRAIDILEKMPK  354 (580)
Q Consensus       289 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~  354 (580)
                      .+...|...+.+...     .+.+++|..+|++.++.. +.+...+..+..++..         .+++++|...++++.+
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            344555555554321     234678999999998774 3345566666655542         2457899999999998


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 043144          355 HGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITY  434 (580)
Q Consensus       355 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  434 (580)
                      .++. +...+..+...+...|++++|...|++.++.++. +...+..+..++...|++++|...++++.+.+.. +...+
T Consensus       333 ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~  409 (553)
T PRK12370        333 LDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAG  409 (553)
T ss_pred             cCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhH
Confidence            7554 7778888888899999999999999999987433 4557888889999999999999999999987732 22333


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144          435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA  514 (580)
Q Consensus       435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  514 (580)
                      ..++..+...|++++|...++++.....+-+...+..+..++...|++++|...+.++....+. +....+.+...|...
T Consensus       410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  488 (553)
T PRK12370        410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQN  488 (553)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhcc
Confidence            3445556678999999999999876532224556777888889999999999999987654322 444556666677776


Q ss_pred             CCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          515 RQTYRAIDILADMVTRS-CKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       515 g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      |  ++|...++.+.+.. -.+....+  +...+.-.|+.+.+..+ +++.+.|
T Consensus       489 g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        489 S--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             H--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            6  58888888876541 11222222  45566777888887777 8887765

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.49  E-value=1.6e-09  Score=106.68  Aligned_cols=292  Identities=14%  Similarity=0.143  Sum_probs=199.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL---  167 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---  167 (580)
                      ...+...|++++|++.++.-... +..........+..+.+.|+.++|..+|..+++.+ |.+..-|..+..+..-.   
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence            45678889999999999886554 33344566788899999999999999999999987 55565666666665322   


Q ss_pred             --CChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCCh-hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144          168 --GEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKL-NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL  243 (580)
Q Consensus       168 --g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  243 (580)
                        .+.+...++|+++ ..-|...+...+.-.+..-..+ ..+..++..++..|+|+   +|..+-..|......+-..++
T Consensus        89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l  165 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL  165 (517)
T ss_pred             ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence              2467778888887 2224333333333222222223 23555666777777653   456666666655555555566


Q ss_pred             HHHHHHc----C----------CCCCHh--HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144          244 LDEMRNK----G----------CIPDVV--TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW  307 (580)
Q Consensus       244 ~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  307 (580)
                      +......    +          -+|+..  ++..+...|-..|++++|++++++..+.. +..+..|..-.+.+-..|++
T Consensus       166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCH
Confidence            6555432    1          123332  44566788888999999999999888773 33367777888888999999


Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhh------H--HHHHHHHHhcCCHHH
Q 043144          308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLS------Y--NPVLHGFCKEKKMDR  379 (580)
Q Consensus       308 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~~~~~~  379 (580)
                      .+|.+.++.+...+ ..|...-+..+..+.+.|++++|.+++....+.+..|....      |  .....+|.+.|++..
T Consensus       245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999988775 34666667777888899999999999888877654332211      1  334577888888888


Q ss_pred             HHHHHHHHHH
Q 043144          380 AIEYLEIMVS  389 (580)
Q Consensus       380 A~~~~~~~~~  389 (580)
                      |+..|..+.+
T Consensus       324 ALk~~~~v~k  333 (517)
T PF12569_consen  324 ALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHH
Confidence            8887777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.49  E-value=5.4e-11  Score=108.23  Aligned_cols=201  Identities=16%  Similarity=0.049  Sum_probs=144.3

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDG  440 (580)
Q Consensus       361 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  440 (580)
                      ...+..+...+...|++++|...+++..+..+ .+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            44556666677777777777777777665432 234566667777777777777777777776654 2345566667777


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          441 LSKVGKTEQAMKLLEEMRTKGL-KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       441 ~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  519 (580)
                      +...|++++|...+++...... ......+..+...+...|++++|...+.+..+..+. +...+..++..+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            7778888888888887775421 123445666777888888888888888888775433 56677788888888889999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          520 AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       520 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      |...+++..+. .+.+...+..++..+...|+.++|..+.+.+...
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            98888888776 3556777777888888888888888888877654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=2e-09  Score=102.12  Aligned_cols=123  Identities=19%  Similarity=0.230  Sum_probs=91.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC--  165 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--  165 (580)
                      .+=++.+..+|++++|.+...+++.-+ |.+...+..-+.++.+.+.|++|+.+.+.-.... ..+...   +=.+||  
T Consensus        16 ~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Y   90 (652)
T KOG2376|consen   16 LTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEY   90 (652)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHH
Confidence            344677888999999999999998874 6677888888889999999999996654322110 111111   234444  


Q ss_pred             hcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          166 RLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      +.+..++|+..++... +.|..+...-.+.+.+.|++++|+.+|+.+.+.+
T Consensus        91 rlnk~Dealk~~~~~~-~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLD-RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HcccHHHHHHHHhccc-ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            6899999999999542 2344477777889999999999999999997765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.46  E-value=3.1e-11  Score=109.83  Aligned_cols=195  Identities=14%  Similarity=0.096  Sum_probs=123.9

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+...|++++|...+++++.. .+.+...+..+...+...|++++|.+.+++..+.. +.+...+..++..+
T Consensus        32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~  109 (234)
T TIGR02521        32 KIRVQLALGYLEQGDLEVAKENLDKALEH-DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence            35566777777888888888888887765 34456677777777788888888888887777665 44556667777777


Q ss_pred             HhcCChhHHHHHHHHc-CC---CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHH
Q 043144          165 CRLGEIDNALQVLERM-SV---APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQA  240 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~-~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  240 (580)
                      ...|++++|.+.++++ ..   +.....+..++..+...|++++|...+++..... +.+...+..+...+...|++++|
T Consensus       110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence            7777777777777776 11   1223345556666666666666666666666543 22344555556666666666666


Q ss_pred             HHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          241 MKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      ...+++..+. .+.+...+..++..+...|+.++|..+.+.+.
T Consensus       189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            6666665554 12244444455555555666666665555443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=1.9e-08  Score=91.43  Aligned_cols=294  Identities=12%  Similarity=0.031  Sum_probs=202.2

Q ss_pred             hcCCHHHHHHHHHHhhh-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC-hhhHHHHHHHHHhcCCHHHH
Q 043144          268 KEGRLDEAIKFLNDMPS-YGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS-VVTFNILINFLCRKGLLGRA  345 (580)
Q Consensus       268 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a  345 (580)
                      -.++...|...+--+.. .-++.|+.....+...+...|+.++|...|++....+  |+ ........-.+.+.|+.+..
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hhhhhhHHHHHHHHHhccCHhhH
Confidence            34555555554444333 2245677778888888888888888888888877653  32 22333334445667888877


Q ss_pred             HHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144          346 IDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNK  425 (580)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  425 (580)
                      ..+...+.... +.....|..-+......++++.|+.+-++.++.... ++..+..-..++...|+.++|.-.|+..+..
T Consensus       286 ~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L  363 (564)
T KOG1174|consen  286 SALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML  363 (564)
T ss_pred             HHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc
Confidence            77777665541 113334444455556678888888888888775332 4446666667788888888888888888765


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHHHhCCCCCCHHH
Q 043144          426 HCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLV-GGLS-REGKVDEAIKLFHDLERLGVRPNVIT  503 (580)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~  503 (580)
                      . +-+...|..++..|...|++.+|.-+-+..... +..+..++..+. ..|. .-.--++|.+++++..+..+. -...
T Consensus       364 a-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~A  440 (564)
T KOG1174|consen  364 A-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPA  440 (564)
T ss_pred             c-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHH
Confidence            4 345778888999999999988888877766553 334555555442 2232 223357788888887765432 2456


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144          504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK  570 (580)
Q Consensus       504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  570 (580)
                      .+.+...|...|.++.++.++++.+..  .||......|++.+...+.+.+|.+.|..+.+.++...
T Consensus       441 V~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~  505 (564)
T KOG1174|consen  441 VNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK  505 (564)
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence            677888888889999999999888864  78888888899999888999999998888888775543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=8.7e-09  Score=97.93  Aligned_cols=420  Identities=14%  Similarity=0.077  Sum_probs=249.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCC-CCCcchHHHHHHHHHhcCCh
Q 043144          124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSV-APDVVTYNTILRTLCDSGKL  202 (580)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  202 (580)
                      +=++.+.+.|++++|.....++...+ |.+...+..-+-+..+.+.+++|+.+.+.-+. ..+...+..-+.+..+.+..
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~   95 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKL   95 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccH
Confidence            33566789999999999999999876 66777777777888999999999988776521 22222222334455689999


Q ss_pred             hHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043144          203 NLAMEVLHKQLEKECYP-DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRLDEAIKFLN  280 (580)
Q Consensus       203 ~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  280 (580)
                      ++|+..+.     +..+ +..+...-...+.+.|++++|.++|+.+.+.+.+. +...-..++.+    +..-.+. +.+
T Consensus        96 Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~----~a~l~~~-~~q  165 (652)
T KOG2376|consen   96 DEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV----AAALQVQ-LLQ  165 (652)
T ss_pred             HHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH----HHhhhHH-HHH
Confidence            99999887     2233 33466666778999999999999999998764321 11111112211    1111111 222


Q ss_pred             HhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCC--Chh-----hHHHHHHHHHhcCCHHHHH
Q 043144          281 DMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG-------CSP--SVV-----TFNILINFLCRKGLLGRAI  346 (580)
Q Consensus       281 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~--~~~-----~~~~l~~~~~~~g~~~~a~  346 (580)
                      ...... ..+...+....+.+...|+|.+|+++++...+.+       -..  +..     .-..|...+-..|+.++|.
T Consensus       166 ~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~  244 (652)
T KOG2376|consen  166 SVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS  244 (652)
T ss_pred             hccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence            222210 1122333444556778899999999998883221       000  110     1223445566789999999


Q ss_pred             HHHHHhhhCCCCCCHhh----HHHHHHHHHh---------------------------------------------cCCH
Q 043144          347 DILEKMPKHGCTPNSLS----YNPVLHGFCK---------------------------------------------EKKM  377 (580)
Q Consensus       347 ~~~~~~~~~~~~~~~~~----~~~l~~~~~~---------------------------------------------~~~~  377 (580)
                      .++...++.... |...    -|.++..-..                                             .+..
T Consensus       245 ~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~  323 (652)
T KOG2376|consen  245 SIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM  323 (652)
T ss_pred             HHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            999888876543 3211    1111111000                                             0001


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH-
Q 043144          378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALC-KDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLE-  455 (580)
Q Consensus       378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-  455 (580)
                      +.+.++-...  -+..|....-+.+..+.. +.....++.+++....+........+...++......|+++.|++++. 
T Consensus       324 ~q~r~~~a~l--p~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~  401 (652)
T KOG2376|consen  324 DQVRELSASL--PGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL  401 (652)
T ss_pred             HHHHHHHHhC--CccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            1111111000  011222222222222222 222466777777777665533335566677788889999999999998 


Q ss_pred             -------HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC------CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144          456 -------EMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL------GVRPNVITYNSIMLGLCKARQTYRAID  522 (580)
Q Consensus       456 -------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~  522 (580)
                             ...+.+..  +.+...+...+.+.++.+.|..++.++...      +-..-..++..++..-.+.|+-++|..
T Consensus       402 ~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s  479 (652)
T KOG2376|consen  402 FLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS  479 (652)
T ss_pred             HhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence                   45544433  445566677777777766677777766421      101112334445555567799999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          523 ILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      +++++.+.+ ++|..+...++.+|++. +.+.|..+-+.+
T Consensus       480 ~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L  517 (652)
T KOG2376|consen  480 LLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKL  517 (652)
T ss_pred             HHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence            999999864 78888888898888764 566776665544

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.45  E-value=1.8e-11  Score=107.09  Aligned_cols=234  Identities=12%  Similarity=0.027  Sum_probs=186.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHH
Q 043144          328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTAL  406 (580)
Q Consensus       328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~  406 (580)
                      .-+.+.++|.+.|.+.+|.+.++..++.  .|-+.+|..|-..|.+..+++.|+.++.+.++.  .|-.+ ....+...+
T Consensus       225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHH
Confidence            3366788889999999999988887776  456778888888999999999999999888775  34444 455667778


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144          407 CKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI  486 (580)
Q Consensus       407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  486 (580)
                      -..++.++|.++++...+.+ +.++....++...|...++++-|+++++++...|+. ++..|+.+.-+|...+.++-++
T Consensus       301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence            88888999999999888766 455666667777888889999999999999988854 7888888888888999999999


Q ss_pred             HHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          487 KLFHDLERLGVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       487 ~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..|+++...--.|+  ..+|..+.......|++..|...|+-.+..+ +.+...++.|+-.-.+.|+.++|+.+++.+..
T Consensus       379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            99988875433343  4578788878888899999999998888653 55677888888778889999999999988877


Q ss_pred             CCCC
Q 043144          565 RGVV  568 (580)
Q Consensus       565 ~g~~  568 (580)
                      ..+.
T Consensus       458 ~~P~  461 (478)
T KOG1129|consen  458 VMPD  461 (478)
T ss_pred             hCcc
Confidence            6543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.44  E-value=8.8e-12  Score=109.06  Aligned_cols=227  Identities=15%  Similarity=0.102  Sum_probs=120.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcC
Q 043144          123 TSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSG  200 (580)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g  200 (580)
                      +.+..+|.+.|-+.+|.+-|+...+.  .|-+.||..|-..|.+..+++.|+.+|.+.  ..|-|+.....+.+.+-..+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence            34555666666666666666555554  344555555566666666666666666554  22333333444555555556


Q ss_pred             ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043144          201 KLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLN  280 (580)
Q Consensus       201 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  280 (580)
                      +.++|.++|+..++.. +.++.....+...|.-.++.+-|+..|+.++..|+. ++..|+.+.-+|.-.++++-++..|.
T Consensus       305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~  382 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ  382 (478)
T ss_pred             hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence            6666666666555543 224444444555555555566666666666555544 55555555555555555555555555


Q ss_pred             HhhhCCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          281 DMPSYGCQPN--VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK  354 (580)
Q Consensus       281 ~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  354 (580)
                      +....--.|+  ...|..+.......|++..|.+.|+-.+..+ +.+...++.|.-.-.+.|+++.|..++.....
T Consensus       383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            5443221222  2345555555555555555555555555442 22334555555555555555555555554443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.43  E-value=8.3e-10  Score=109.32  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHHHHH
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERL--GVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPT-EATYTIL  542 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l  542 (580)
                      ..|..|+.-+......+.|..+.++....  .+..+..-+..+.+.+.+.+....+.++++++.+.-. .|. ..++..+
T Consensus       492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~  571 (1088)
T KOG4318|consen  492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL  571 (1088)
T ss_pred             hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence            45778888888888899999888887532  2334556678888888999999999999998876411 222 4566777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144          543 IEGIAYEGLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       543 ~~~~~~~g~~~~A~~~~~~~~~~g~~~  569 (580)
                      .......|+.+.-.++.+-+...|+..
T Consensus       572 lns~a~agqqe~Lkkl~d~lvslgl~e  598 (1088)
T KOG4318|consen  572 LNSGAPAGQQEKLKKLADILVSLGLSE  598 (1088)
T ss_pred             HhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence            788888999999999999888888765

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.42  E-value=2.7e-09  Score=104.44  Aligned_cols=432  Identities=13%  Similarity=0.017  Sum_probs=279.5

Q ss_pred             CCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHH
Q 043144           80 LNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVP-DVITYN  158 (580)
Q Consensus        80 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~  158 (580)
                      +.++...|-.+.-++.+.|+++.+.+.|++.... .......|..+...|...|.-..|..+++........| |+..+.
T Consensus       319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            3445567777888889999999999999999776 34456789999999999999999999999877654333 444444


Q ss_pred             HHHHHHH-hcCChhHHHHHHHHc-C------CCCCcchHHHHHHHHHhc-----------CChhHHHHHHHHHHhCCCCC
Q 043144          159 VLISGYC-RLGEIDNALQVLERM-S------VAPDVVTYNTILRTLCDS-----------GKLNLAMEVLHKQLEKECYP  219 (580)
Q Consensus       159 ~l~~~~~-~~g~~~~A~~~~~~~-~------~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~  219 (580)
                      ..-..|. +.+..++++.+..++ +      -.-....|..++-+|...           ....++++.+++.++.+.. 
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-  476 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-  476 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-
Confidence            3334443 367778887777665 1      112344566666555432           1345778888888876532 


Q ss_pred             ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 043144          220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR  299 (580)
Q Consensus       220 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  299 (580)
                      |......+.--|+..++++.|.+...+..+.+...+...|..|+-.+...+++.+|+.+.+.....- ..|......-+.
T Consensus       477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~  555 (799)
T KOG4162|consen  477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH  555 (799)
T ss_pred             CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence            3344444556688899999999999999998667789999999999999999999999998876531 112222222222


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh--CCCCCCHhhHHHHHHHHHhcC--
Q 043144          300 SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK--HGCTPNSLSYNPVLHGFCKEK--  375 (580)
Q Consensus       300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~--  375 (580)
                      .-...++.+++......++.-- . +.....       ..++-....+....+.-  ....-...++..+.......+  
T Consensus       556 i~~~~~~~e~~l~t~~~~L~~w-e-~~~~~q-------~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~  626 (799)
T KOG4162|consen  556 IELTFNDREEALDTCIHKLALW-E-AEYGVQ-------QTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS  626 (799)
T ss_pred             hhhhcccHHHHHHHHHHHHHHH-H-hhhhHh-------hhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh
Confidence            3334566777766655554320 0 000000       11111122222222111  011111222222222111111  


Q ss_pred             -CHHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 043144          376 -KMDRAIEYLEIMVSRGCYPD------IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE  448 (580)
Q Consensus       376 -~~~~A~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  448 (580)
                       ..+..+..+..  .  ..|+      ...|......+.+.+..++|...+.+..... +-....|......+...|+.+
T Consensus       627 ~~se~~Lp~s~~--~--~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~  701 (799)
T KOG4162|consen  627 AGSELKLPSSTV--L--PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLE  701 (799)
T ss_pred             cccccccCcccc--c--CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhH
Confidence             11111110000  0  1122      1245566677888888899988888877654 344566777777788899999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHH--HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIK--LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILAD  526 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  526 (580)
                      +|.+.|......+ +-++.....+...+.+.|+..-|..  ++..+.+.++. +...|..+...+.+.|+.++|.+.|..
T Consensus       702 EA~~af~~Al~ld-P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~a  779 (799)
T KOG4162|consen  702 EAKEAFLVALALD-PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQA  779 (799)
T ss_pred             HHHHHHHHHHhcC-CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHH
Confidence            9999999888653 2346678889999999998777777  99999988765 889999999999999999999999998


Q ss_pred             HHHc
Q 043144          527 MVTR  530 (580)
Q Consensus       527 ~~~~  530 (580)
                      ....
T Consensus       780 a~qL  783 (799)
T KOG4162|consen  780 ALQL  783 (799)
T ss_pred             HHhh
Confidence            8754

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=4.1e-09  Score=99.17  Aligned_cols=425  Identities=13%  Similarity=0.102  Sum_probs=253.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      -++.+..|+++.|+..|-+++.. .|++...|+.-..+|++.|++++|++=-.+.++.. |.=+..|+..+.++.-.|++
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l-~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~-p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIML-SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN-PDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHcc-CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC-CchhhHHHHhHHHHHhcccH
Confidence            45677889999999999999988 45688899989999999999999998877777765 33456889999999999999


Q ss_pred             hHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-CHhHHHHHHHHH
Q 043144          171 DNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES-GVGQAMKLLDEM  247 (580)
Q Consensus       171 ~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~  247 (580)
                      ++|+.-|.+- .. +.|...++.+..++.-  +.. +.+.|         .+...|..+...-.... ..+.+.....+.
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~~-~~~~~---------~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~  154 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYLE--DYA-ADQLF---------TKPYFHEKLANLPLTNYSLSDPAYVKILEI  154 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhhH--HHH-hhhhc---------cCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence            9999999886 33 3445667777776611  111 01111         11112221111100000 001111111111


Q ss_pred             HHcCCCCCHhHH---HHHHHHHHhcCCHHH-HHHHHHHhh-hCCCCC----------------------CHHHHHHHHHH
Q 043144          248 RNKGCIPDVVTY---NVLVNGICKEGRLDE-AIKFLNDMP-SYGCQP----------------------NVITHNIILRS  300 (580)
Q Consensus       248 ~~~~~~~~~~~~---~~l~~~~~~~g~~~~-A~~~~~~~~-~~~~~~----------------------~~~~~~~ll~~  300 (580)
                      ...+ +.++..|   ..++.+.......+. ....-..+. ..+..|                      -..-...+.++
T Consensus       155 ~~~~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna  233 (539)
T KOG0548|consen  155 IQKN-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA  233 (539)
T ss_pred             hhcC-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence            1111 0000000   001111110000000 000000000 000000                      11224456777


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHH-------HHHHHHh
Q 043144          301 MCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNP-------VLHGFCK  373 (580)
Q Consensus       301 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~  373 (580)
                      ..+..++..|.+.+...++..  .+..-++....+|...|.+..+....+...+.|.. ...-++.       +..+|.+
T Consensus       234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k  310 (539)
T KOG0548|consen  234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK  310 (539)
T ss_pred             HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence            778888889999888888764  46666777788888889888888888777766543 2222322       3346666


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHH
Q 043144          374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMK  452 (580)
Q Consensus       374 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~  452 (580)
                      .++++.++..|.+.+.....|+.         ..+....+++....+...-.+  |.. .-...-...+.+.|++..|.+
T Consensus       311 ~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~  379 (539)
T KOG0548|consen  311 REDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVK  379 (539)
T ss_pred             HHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHH
Confidence            77888888888887765434332         222333445544444433322  221 112222555678899999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 043144          453 LLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC  532 (580)
Q Consensus       453 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  532 (580)
                      .|.+++... +-|...|..-.-+|.+.|.+..|+.-.+..++.++. ....|..=+.++....+|+.|.+.|++.++.. 
T Consensus       380 ~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~d-  456 (539)
T KOG0548|consen  380 HYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELD-  456 (539)
T ss_pred             HHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            999998875 557788888888999999999999988888876533 45566666667777788999999999888763 


Q ss_pred             CCCHHHHHHHHHHHH
Q 043144          533 KPTEATYTILIEGIA  547 (580)
Q Consensus       533 ~~~~~~~~~l~~~~~  547 (580)
                      +.+......+.++..
T Consensus       457 p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  457 PSNAEAIDGYRRCVE  471 (539)
T ss_pred             chhHHHHHHHHHHHH
Confidence            333344444444443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.38  E-value=5.4e-10  Score=108.64  Aligned_cols=238  Identities=19%  Similarity=0.152  Sum_probs=172.5

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-----CC-CCCHhh-HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC
Q 043144          326 VVTFNILINFLCRKGLLGRAIDILEKMPKH-----GC-TPNSLS-YNPVLHGFCKEKKMDRAIEYLEIMVSR-----GCY  393 (580)
Q Consensus       326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~  393 (580)
                      ..+...+..+|...|+++.|..+++..++.     |. .|...+ .+.+...|...+++++|..+|++++.-     |..
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            356666888888888888888888776653     21 122222 233567788899999999999988642     222


Q ss_pred             -CCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---C
Q 043144          394 -PDI-VTYNTLLTALCKDGKVDVAVEILNQLSNK-----H-CSPV-LITYNTVIDGLSKVGKTEQAMKLLEEMRTK---G  461 (580)
Q Consensus       394 -~~~-~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~  461 (580)
                       |.+ .+++.|..+|.+.|++++|...++++.+.     + ..|. ...++.++..+...+++++|..+++...+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence             222 37888888999999999998888776431     1 1122 234677788888999999999999876543   1


Q ss_pred             CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          462 LKPD----TITYSSLVGGLSREGKVDEAIKLFHDLERL----GV--RPN-VITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       462 ~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +.++    ..+++.|...|...|++++|.+++++++..    +-  .+. ...++.|...|.+.+++++|.++|.+...-
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            2222    357899999999999999999999998632    11  122 446788999999999999999988876531


Q ss_pred             ----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          531 ----S--CKPTEATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       531 ----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                          |  .+....+|..|+..|.+.|+++.|.++.+.+.
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence                2  12235688999999999999999999998886

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.36  E-value=1.7e-09  Score=107.23  Aligned_cols=459  Identities=15%  Similarity=0.103  Sum_probs=255.0

Q ss_pred             ccccccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043144           73 SGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVP  152 (580)
Q Consensus        73 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  152 (580)
                      ..+...++.|+.++|..+|..|+..|+.+.|- +|..|.-...+.....++.++.+....++.+.+.           .|
T Consensus        14 a~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep   81 (1088)
T KOG4318|consen   14 ALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EP   81 (1088)
T ss_pred             HHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CC
Confidence            34556677777888888888888888887777 8887776666667777888887777777776655           56


Q ss_pred             CHHHHHHHHHHHHhcCChhH---HHHHHHHc-------CCC-CC-------------cchHHHHHHHHHhcCChhHHHHH
Q 043144          153 DVITYNVLISGYCRLGEIDN---ALQVLERM-------SVA-PD-------------VVTYNTILRTLCDSGKLNLAMEV  208 (580)
Q Consensus       153 ~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-------~~~-~~-------------~~~~~~l~~~~~~~g~~~~A~~~  208 (580)
                      .+.+|..|..+|...||...   ..+.++.+       ++. |.             ...-...+....-.|-++.++++
T Consensus        82 ~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   82 LADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             chhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            77788888888888887543   22212221       110 00             00112223333333444444444


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHh-cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 043144          209 LHKQLEKECYPDVITYTILIEATCK-ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGC  287 (580)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  287 (580)
                      +..+.....   ......+++-+.. ...+++-........+   .|+..++...+.+...+|+.+.|..++.+|.+.|+
T Consensus       162 l~~~Pvsa~---~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  162 LAKVPVSAW---NAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HhhCCcccc---cchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            433322110   0011111222222 1222333332222222   46777888888877778888888888888888887


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 043144          288 QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPV  367 (580)
Q Consensus       288 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  367 (580)
                      +.+.+-+-.++.+   .++..-+..+++.|.+.|+.|+..|+......+..+|....+...    .+.........+..+
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----sq~~hg~tAavrsaa  308 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----SQLAHGFTAAVRSAA  308 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----cchhhhhhHHHHHHH
Confidence            7777666666554   667777777777777788888887777666666654442221111    110000012222333


Q ss_pred             HHHHHhcCCHHH-----HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHH
Q 043144          368 LHGFCKEKKMDR-----AIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH---CSPVLITYNTVID  439 (580)
Q Consensus       368 ~~~~~~~~~~~~-----A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~  439 (580)
                      ..+.....+.+.     ....+.+..-.|......+|...+. ....|.-++...+-..+....   ...++..|..++.
T Consensus       309 ~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lr  387 (1088)
T KOG4318|consen  309 CRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLR  387 (1088)
T ss_pred             hcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHH
Confidence            322111112111     1222222222344433344443333 334677788888877775432   1233445555444


Q ss_pred             HHHhCCC----------------------HHHHHHHHHHHHHCCCCCCH----------------------------HHH
Q 043144          440 GLSKVGK----------------------TEQAMKLLEEMRTKGLKPDT----------------------------ITY  469 (580)
Q Consensus       440 ~~~~~g~----------------------~~~A~~~~~~m~~~~~~p~~----------------------------~~~  469 (580)
                      -|.+.-+                      ..+..+++...     .||.                            ..-
T Consensus       388 qyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~  462 (1088)
T KOG4318|consen  388 QYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIA  462 (1088)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHH
Confidence            4432111                      11111111111     1111                            122


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHH
Q 043144          470 SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR--SCKPTEATYTILIEGIA  547 (580)
Q Consensus       470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~  547 (580)
                      +.++..|++.-+..+++..-+.....-+   ...|..|+.-+......+.|..+..+....  ....+..-+..+.+.+.
T Consensus       463 ~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~  539 (1088)
T KOG4318|consen  463 NQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQ  539 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHH
Confidence            4455566666666666655554443211   256888999999999999999998887632  23445566788889999


Q ss_pred             hcCCHHHHHHHHHHHHhC
Q 043144          548 YEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       548 ~~g~~~~A~~~~~~~~~~  565 (580)
                      +.+....+..+++++.+.
T Consensus       540 r~~~l~dl~tiL~e~ks~  557 (1088)
T KOG4318|consen  540 RLAILYDLSTILYEDKSS  557 (1088)
T ss_pred             HhHHHHHHHHHHhhhhHH
Confidence            999999999999998873

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=6.5e-09  Score=90.28  Aligned_cols=358  Identities=14%  Similarity=0.123  Sum_probs=224.3

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH-HHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV-LISG  163 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~  163 (580)
                      -.+...+..+++..++.+|++++..-.++ .+.+....+.+..+|....++..|...++++-...  |...-|.. -...
T Consensus        11 Geftaviy~lI~d~ry~DaI~~l~s~~Er-~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   11 GEFTAVVYRLIRDARYADAIQLLGSELER-SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS   87 (459)
T ss_pred             CchHHHHHHHHHHhhHHHHHHHHHHHHhc-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence            35667778888899999999999887666 34466778888899999999999999999987653  44433332 3455


Q ss_pred             HHhcCChhHHHHHHHHcCCCCCcchHHHHHH--HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 043144          164 YCRLGEIDNALQVLERMSVAPDVVTYNTILR--TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM  241 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  241 (580)
                      +.+.+.+..|+.+...++..++...-..-++  .....+++..+..+.++....|   +..+.+.......+.|+++.|.
T Consensus        88 LY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAv  164 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAV  164 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHH
Confidence            6678889999999998854444332222222  2345778888888877765433   5556666666677889999999


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144          242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG  321 (580)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  321 (580)
                      +-|+...+.+--.....||.-+ +..+.|+++.|++...++.++|++..+..-.-+..--...+....-..+....    
T Consensus       165 qkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sa----  239 (459)
T KOG4340|consen  165 QKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSA----  239 (459)
T ss_pred             HHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHH----
Confidence            9999888754222466676444 44567888999999888888775432211000000000000000011111111    


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144          322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH-GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYN  400 (580)
Q Consensus       322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  400 (580)
                         -+..+|.-...+.+.++++.|.+.+-.|+-+ ....|+++...+.-. -..+++....+-+.-++...+- ...||.
T Consensus       240 ---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nPf-P~ETFA  314 (459)
T KOG4340|consen  240 ---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNPF-PPETFA  314 (459)
T ss_pred             ---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCCC-ChHHHH
Confidence               1234555556677899999999999888754 234567776655422 2245566666666666665443 456888


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          401 TLLTALCKDGKVDVAVEILNQLSNKHC-SPVLITYNTVIDGLSKVGKTEQAMKLLEEMR  458 (580)
Q Consensus       401 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  458 (580)
                      .++-.||+..-++.|-+++.+-..... -.+...|+.+=..-...-.+++|++-++.+.
T Consensus       315 NlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La  373 (459)
T KOG4340|consen  315 NLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLA  373 (459)
T ss_pred             HHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            899999999999999888865332221 1233444433222234456677776665543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.36  E-value=9.6e-09  Score=101.33  Aligned_cols=289  Identities=17%  Similarity=0.171  Sum_probs=157.6

Q ss_pred             HHHHHhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-h----
Q 043144          161 ISGYCRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC-K----  233 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~----  233 (580)
                      ...+...|++++|++.+++- ..-.| .......+..+.+.|+.++|..+|+.+++.+  |+...|...+..+. -    
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccc
Confidence            34455667777777776665 22233 3344555666667777777777777777665  44444433333322 1    


Q ss_pred             -cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144          234 -ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLD-EAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAE  311 (580)
Q Consensus       234 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  311 (580)
                       ..+.+....+|+++...-  |.......+.-.+.....+. .+..++..+...|+++   ++..+-..|.......-..
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~  163 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIE  163 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHH
Confidence             124555566666665542  22222211211111111222 3334444455555432   2333333343333333333


Q ss_pred             HHHHHHHHc----C----------CCCChh--hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC
Q 043144          312 RLLAEMVLK----G----------CSPSVV--TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK  375 (580)
Q Consensus       312 ~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  375 (580)
                      .++......    +          -+|...  ++..+.+.|...|++++|++.+++.+++.+. .+..|..-...+-..|
T Consensus       164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G  242 (517)
T PF12569_consen  164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCC
Confidence            344333221    0          123332  3355567777788888888888877776332 3566677777777788


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH------H--HHHHHHHHhCCCH
Q 043144          376 KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT------Y--NTVIDGLSKVGKT  447 (580)
Q Consensus       376 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~--~~l~~~~~~~g~~  447 (580)
                      ++.+|.+.++.....+.. |-..-+..+..+.+.|++++|..++..+...+..|....      |  .....+|.+.|++
T Consensus       243 ~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~  321 (517)
T PF12569_consen  243 DLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY  321 (517)
T ss_pred             CHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence            888888888877766443 555666667777778888888888777766553222211      1  3345667777777


Q ss_pred             HHHHHHHHHHH
Q 043144          448 EQAMKLLEEMR  458 (580)
Q Consensus       448 ~~A~~~~~~m~  458 (580)
                      ..|++.|..+.
T Consensus       322 ~~ALk~~~~v~  332 (517)
T PF12569_consen  322 GLALKRFHAVL  332 (517)
T ss_pred             HHHHHHHHHHH
Confidence            77777666544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.35  E-value=9.7e-10  Score=92.11  Aligned_cols=195  Identities=16%  Similarity=0.126  Sum_probs=136.3

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      ....+.-.|...|++..|.+-++.+++. .|.+..+|..+...|-+.|..+.|.+.|++..... |.+..+.|..+..+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~-DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH-DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            4456666777888888888888888776 45566777777778888888888888888877766 556677777888888


Q ss_pred             hcCChhHHHHHHHHcCCCCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH
Q 043144          166 RLGEIDNALQVLERMSVAPD----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM  241 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  241 (580)
                      ..|++++|...|++.-..|+    ..+|..++-+..+.|+.+.|...|++.++... ....+...+.....+.|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence            88888888888887722232    45677777777777777777777777777642 23445556667777777777777


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS  284 (580)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  284 (580)
                      ..++.....+. ++..+.-..|..-...|+.+.+.++=..+.+
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            77777766553 5666666666666667776666655444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=7.9e-09  Score=97.31  Aligned_cols=413  Identities=16%  Similarity=0.095  Sum_probs=256.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChh
Q 043144          126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLN  203 (580)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~  203 (580)
                      .++.+..|+++.|..+|...+... |++...|..-..+|++.|++++|++=-.+. ...|+ ...|+..+.++.-.|+++
T Consensus         9 gnaa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~   87 (539)
T KOG0548|consen    9 GNAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE   87 (539)
T ss_pred             HHhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence            456788999999999999999888 568889999999999999999999876665 55666 567999999999999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH-----HHHhcCCHHHHHHH
Q 043144          204 LAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN-----GICKEGRLDEAIKF  278 (580)
Q Consensus       204 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~g~~~~A~~~  278 (580)
                      +|+..|.+-++.. +.+...+..+..++.    .+.+.   .+.     -.++..|..+..     .+...-.+..-++.
T Consensus        88 eA~~ay~~GL~~d-~~n~~L~~gl~~a~~----~~~~~---~~~-----~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~  154 (539)
T KOG0548|consen   88 EAILAYSEGLEKD-PSNKQLKTGLAQAYL----EDYAA---DQL-----FTKPYFHEKLANLPLTNYSLSDPAYVKILEI  154 (539)
T ss_pred             HHHHHHHHHhhcC-CchHHHHHhHHHhhh----HHHHh---hhh-----ccCcHHHHHhhcChhhhhhhccHHHHHHHHH
Confidence            9999999998875 335556666666651    11111   110     012223322221     11111111111111


Q ss_pred             HHHhhh-CCCCC-CHHHHHHHHHH-------HHhcCC--------hH----HHHHHHHHHHHc-CCCCChhhHHHHHHHH
Q 043144          279 LNDMPS-YGCQP-NVITHNIILRS-------MCSTGR--------WM----DAERLLAEMVLK-GCSPSVVTFNILINFL  336 (580)
Q Consensus       279 ~~~~~~-~~~~~-~~~~~~~ll~~-------~~~~~~--------~~----~a~~~~~~~~~~-~~~~~~~~~~~l~~~~  336 (580)
                      +..-.. .+... +.....++...       ....+.        ..    .......+..+. ....-..-...+.++.
T Consensus       155 ~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaa  234 (539)
T KOG0548|consen  155 IQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAA  234 (539)
T ss_pred             hhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHH
Confidence            111100 00000 11000000000       000000        00    000000000000 0000111234566777


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhc
Q 043144          337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-------TYNTLLTALCKD  409 (580)
Q Consensus       337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~li~~~~~~  409 (580)
                      .+..+++.+.+.+....+..  -+..-++....+|...|.+.++...-....+.|.. ...       .+..+..+|.+.
T Consensus       235 ykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~  311 (539)
T KOG0548|consen  235 YKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKR  311 (539)
T ss_pred             HHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhH
Confidence            77788888888888887764  35555666677888888888777776666655432 111       222344466677


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHH
Q 043144          410 GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSREGKVDEAIKL  488 (580)
Q Consensus       410 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~  488 (580)
                      ++++.|+..|.+.......|+.         ..+....+++....+...-.  .|.. .-...-...+.+.|++..|...
T Consensus       312 ~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~~  380 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVKH  380 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHHH
Confidence            7888888888887765544332         22233445555555554432  2332 1222336678899999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      |.+++...+. |...|....-+|.+.|.+..|++-.+..++.. ++....|..=+.++....+|+.|.+.|++..+.++.
T Consensus       381 YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~  458 (539)
T KOG0548|consen  381 YTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPS  458 (539)
T ss_pred             HHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            9999988755 88999999999999999999999988888763 556777887788888999999999999999887743

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=7e-08  Score=87.83  Aligned_cols=395  Identities=10%  Similarity=0.034  Sum_probs=234.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVG-KTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      .-.+..|...++-+.|+....+.....-.   .-.+.++..+.+.| +-.++.--+...+..- +........++..-  
T Consensus       101 r~~aecy~~~~n~~~Ai~~l~~~p~t~r~---p~inlMla~l~~~g~r~~~~vl~ykevvrec-p~aL~~i~~ll~l~--  174 (564)
T KOG1174|consen  101 RRAAECYRQIGNTDMAIETLLQVPPTLRS---PRINLMLARLQHHGSRHKEAVLAYKEVIREC-PMALQVIEALLELG--  174 (564)
T ss_pred             HHHHHHHHHHccchHHHHHHhcCCccccc---hhHHHHHHHHHhccccccHHHHhhhHHHHhc-chHHHHHHHHHHHh--
Confidence            45678888889999998887765433111   12333443333333 2223332233332211 21111111111111  


Q ss_pred             cCChhHHHHHHHHcCCCCCcchHHHHHHHHH--hcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144          167 LGEIDNALQVLERMSVAPDVVTYNTILRTLC--DSGKLNLAMEVLHKQLEK-ECYPDVITYTILIEATCKESGVGQAMKL  243 (580)
Q Consensus       167 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~  243 (580)
                      ..-.+.+--....+..+|+......-+.+++  -.++-..|...+-.+... -++-++.....+...+...|+.++|...
T Consensus       175 v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~  254 (564)
T KOG1174|consen  175 VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDI  254 (564)
T ss_pred             hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHH
Confidence            1122333333333344555444444444443  344444444444333322 3455777888888899999999999999


Q ss_pred             HHHHHHcCCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          244 LDEMRNKGCIPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       244 ~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      |+.....+  |+ +.........+...|+++....+...+.... ......|..-+......+++..|+.+-++.++.. 
T Consensus       255 Fe~~~~~d--py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-  330 (564)
T KOG1174|consen  255 FSSTLCAN--PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-  330 (564)
T ss_pred             HHHHhhCC--hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-
Confidence            98887653  32 2233333444556778777777766665432 1233344444555566778888888887777653 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      +.+...+-.-...+...++.++|.-.|+......+ .+..+|..++.+|...|.+.+|.-.-+...+. ...+..++..+
T Consensus       331 ~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~  408 (564)
T KOG1174|consen  331 PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF  408 (564)
T ss_pred             cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh
Confidence            23344444445667778888888888887766532 36778888888888888888887766655443 22244444444


Q ss_pred             H-HHHH-hcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          403 L-TALC-KDGKVDVAVEILNQLSNKHCSPV-LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       403 i-~~~~-~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      . ..+. ...--++|..+++......  |+ ...-+.+...+...|..++++.++++....  .||....+.|.+.+...
T Consensus       409 g~~V~~~dp~~rEKAKkf~ek~L~~~--P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~  484 (564)
T KOG1174|consen  409 GTLVLFPDPRMREKAKKFAEKSLKIN--PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQ  484 (564)
T ss_pred             cceeeccCchhHHHHHHHHHhhhccC--CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHh
Confidence            2 2222 1122377888887776654  43 344566677777888888888888887753  67888888888888888


Q ss_pred             CCHHHHHHHHHHHHhCCCC
Q 043144          480 GKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       480 g~~~~A~~~~~~~~~~~~~  498 (580)
                      +.+++|.+.|..+.+.+++
T Consensus       485 Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  485 NEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             hhHHHHHHHHHHHHhcCcc
Confidence            8888888888888776544

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.32  E-value=1.7e-09  Score=101.04  Aligned_cols=220  Identities=14%  Similarity=0.052  Sum_probs=147.9

Q ss_pred             HHHcCChHHHHHHHHHHHhCCC-CC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           94 LVRNGELEEGFKFLESMVYHGD-IP--DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      ....++.+.++.-+.+++.... .|  ....|..+...|...|++++|...|++..+.. |.++..|+.++..+...|++
T Consensus        36 ~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~  114 (296)
T PRK11189         36 LQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNF  114 (296)
T ss_pred             cCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCH
Confidence            3344567888888888886422 12  24567788888899999999999999998876 66788999999999999999


Q ss_pred             hHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144          171 DNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR  248 (580)
Q Consensus       171 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  248 (580)
                      ++|.+.|++. ...| +..+|..++.++...|++++|.+.|++..+..  |+..........+...+++++|...|....
T Consensus       115 ~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~  192 (296)
T PRK11189        115 DAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRY  192 (296)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence            9999999988 4444 46678888888999999999999999988865  433222222223445678888988887655


Q ss_pred             HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144          249 NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS---YGC---QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG  321 (580)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  321 (580)
                      ... .++...+ .+  .....|+..++ +.+..+.+   ...   +.....|..+...+...|++++|...|+.+.+.+
T Consensus       193 ~~~-~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        193 EKL-DKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hhC-CccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            432 2222222 22  22334554433 23333321   110   1123467777777777788888888887777664

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.30  E-value=5.2e-10  Score=108.75  Aligned_cols=235  Identities=16%  Similarity=0.126  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHc--------C-CCCCcch-HHHHHHHHHhcCChhHHHHHHHHHHhC-----CC-
Q 043144          154 VITYNVLISGYCRLGEIDNALQVLERM--------S-VAPDVVT-YNTILRTLCDSGKLNLAMEVLHKQLEK-----EC-  217 (580)
Q Consensus       154 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~-  217 (580)
                      ..+...+...|...|++++|..+++..        + ..|.+.+ .+.+...|...+++.+|..+|++++..     |. 
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            334555667777777777777776665        1 1222222 334666677777777777777776642     10 


Q ss_pred             CC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-----CC-CCCHh-HHHHHHHHHHhcCCHHHHHHHHHHhhhC---C
Q 043144          218 YP-DVITYTILIEATCKESGVGQAMKLLDEMRNK-----GC-IPDVV-TYNVLVNGICKEGRLDEAIKFLNDMPSY---G  286 (580)
Q Consensus       218 ~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~  286 (580)
                      .| -..+++.|..+|.+.|++++|...++.+.+.     +. .|.+. .++.++..+...+++++|..++....+.   -
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~  358 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA  358 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence            11 1335566666777777777777666665431     11 12222 3455666777777777777777664321   0


Q ss_pred             CCC----CHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----C--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 043144          287 CQP----NVITHNIILRSMCSTGRWMDAERLLAEMVLK-----G--CSPSVVTFNILINFLCRKGLLGRAIDILEKMPK-  354 (580)
Q Consensus       287 ~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-  354 (580)
                      ..+    -..+++.+...|...|++++|.++|+.++..     |  ..-....++.+...|.+.+...+|.++|.+... 
T Consensus       359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i  438 (508)
T KOG1840|consen  359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI  438 (508)
T ss_pred             ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence            111    2356777777788888888888888777653     1  111133566677777777777777777765432 


Q ss_pred             ---CCCC--CCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          355 ---HGCT--PNSLSYNPVLHGFCKEKKMDRAIEYLEIMV  388 (580)
Q Consensus       355 ---~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  388 (580)
                         .|+.  -...+|..|...|...|+++.|.++.+.+.
T Consensus       439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               2221  123567778888888888888888777765

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.29  E-value=5.3e-09  Score=87.80  Aligned_cols=199  Identities=16%  Similarity=0.007  Sum_probs=150.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS  442 (580)
Q Consensus       363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  442 (580)
                      +...+.-.|.+.|+...|..-+++.++.++. +..++..+...|.+.|+.+.|.+.|+...+.. +.+..+.|.....+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            3445666788888888888888888876322 34477788888888888888888888887766 345667777778888


Q ss_pred             hCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          443 KVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      ..|++++|...|++......- --..+|..+..+..+.|+.+.|...|++..+..+. ...+...+.......|++-.|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            888888888888888765211 12457777777778888888888888888876654 4556777888888888888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      .+++.....+ .++..++...++.-...|+.+.|.++=..+.+.
T Consensus       194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8888887765 488888888888888888888877766666554

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=2.5e-07  Score=91.43  Aligned_cols=210  Identities=15%  Similarity=0.106  Sum_probs=123.4

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVY--------HGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDV  154 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  154 (580)
                      +...|.++.+.+.+..+++-|.--+-.|..        +....+...-..++......|..++|..+|++....+     
T Consensus       756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~D-----  830 (1416)
T KOG3617|consen  756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRYD-----  830 (1416)
T ss_pred             hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHHH-----
Confidence            456888899988888887777655544421        1111111222334444678888899999988876532     


Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH----------hCCC-------
Q 043144          155 ITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL----------EKEC-------  217 (580)
Q Consensus       155 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~-------  217 (580)
                          .|=..|...|.+++|+++-+.-..-.-..+|......+-..++.+.|++.|++.-          ...+       
T Consensus       831 ----LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv  906 (1416)
T KOG3617|consen  831 ----LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYV  906 (1416)
T ss_pred             ----HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHH
Confidence                3446667788888888887654211223467777777777888888888877532          2111       


Q ss_pred             --CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHH
Q 043144          218 --YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHN  295 (580)
Q Consensus       218 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  295 (580)
                        ..|...|.......-..|+++.|+.+|....+         |-++++..|-+|+.++|-.+-++-      -|.....
T Consensus       907 ~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcY  971 (1416)
T KOG3617|consen  907 RRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACY  971 (1416)
T ss_pred             HhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHH
Confidence              12344555555555667777777777766543         333444444455555555444332      1344444


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 043144          296 IILRSMCSTGRWMDAERLLAE  316 (580)
Q Consensus       296 ~ll~~~~~~~~~~~a~~~~~~  316 (580)
                      .+.+.|-..|++.+|..+|-+
T Consensus       972 hlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHhhhhHHHHHHHHHHHH
Confidence            555555555555555555443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.28  E-value=5.5e-09  Score=97.61  Aligned_cols=217  Identities=13%  Similarity=-0.028  Sum_probs=121.4

Q ss_pred             ChHHHHHHHHHHHHcC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043144          306 RWMDAERLLAEMVLKG-CSP--SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIE  382 (580)
Q Consensus       306 ~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  382 (580)
                      ..+.++.-+.+++... ..|  ....|..+...|...|+.++|...|++..+..+. +...|+.+...+...|++++|..
T Consensus        41 ~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         41 QQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             HHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHH
Confidence            4455555555555421 111  1234556666677777777777777777665433 56667777777777777777777


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 043144          383 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL  462 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  462 (580)
                      .|++.++..+. +..++..+..++...|++++|.+.|+...+..  |+..........+...+++++|...|++..... 
T Consensus       120 ~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-  195 (296)
T PRK11189        120 AFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-  195 (296)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-
Confidence            77777665322 34466666667777777777777777776654  322211111222334566777777776554321 


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC---CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144          463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERL---GV--RP-NVITYNSIMLGLCKARQTYRAIDILADMVTRS  531 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  531 (580)
                      .|+...+ .  ......|+..++ ..+..+.+.   .+  .| ....|..++..+...|++++|+..|++.++.+
T Consensus       196 ~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        196 DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            2222211 1  222234444333 233333311   11  01 23467777777888888888888888877664

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.23  E-value=9.9e-08  Score=96.20  Aligned_cols=456  Identities=12%  Similarity=0.030  Sum_probs=283.0

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 043144           99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLE  178 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  178 (580)
                      +...|+..|-+.++. .+.-...|..|...|...-+...|.+.|+...+.+ +.+...+....+.|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrl-d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRL-DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            367778888777765 23334678899999988889999999999998887 6788889999999999999999999855


Q ss_pred             HcC-CCC---CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 043144          179 RMS-VAP---DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP  254 (580)
Q Consensus       179 ~~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  254 (580)
                      ..+ ..|   -...|...+-.|...++...|+.-|+..++.. +.|...|..+..+|...|++..|.++|.++....  |
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P  627 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--P  627 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--c
Confidence            442 111   12345556677888999999999999998875 3478899999999999999999999999887653  3


Q ss_pred             CH-hHHHHHHHHHHhcCCHHHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHhcCChHH-------HHHHHHHHHHc
Q 043144          255 DV-VTYNVLVNGICKEGRLDEAIKFLNDMPSY------GCQPNVITHNIILRSMCSTGRWMD-------AERLLAEMVLK  320 (580)
Q Consensus       255 ~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~~~-------a~~~~~~~~~~  320 (580)
                      +. ..---....-+..|.+.+|+..+......      +...-..++..+...+...|-..+       +++.|.-.+..
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            22 12122233446789999999988876532      111112223222222333333333       33333332222


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHH------HHHHHHHH-hhhCC--------------------CCCCHhhHHHHHHHHHh
Q 043144          321 GCSPSVVTFNILINFLCRKGLLG------RAIDILEK-MPKHG--------------------CTPNSLSYNPVLHGFCK  373 (580)
Q Consensus       321 ~~~~~~~~~~~l~~~~~~~g~~~------~a~~~~~~-~~~~~--------------------~~~~~~~~~~l~~~~~~  373 (580)
                      ....+...|-.+.++|.-.-..+      ....++.. ....+                    ...+..+|..++..|.+
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr  787 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR  787 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence            21223333333322221100000      00001100 11111                    11234455555554443


Q ss_pred             ----c----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 043144          374 ----E----KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG  445 (580)
Q Consensus       374 ----~----~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  445 (580)
                          .    .+...|+..+.+.++.. ..+..+|+.|.-+ ...|++.-|...|-...... +....+|..+...+.+..
T Consensus       788 ~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~  864 (1238)
T KOG1127|consen  788 YFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQ  864 (1238)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEecc
Confidence                1    22346778888777653 2366677777655 55577777777665554433 344667877888888899


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE----RLGVRPNVITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      +++-|...|...+... +.|...|..........|+.-++..+|..--    ..|--++...|.+........|++++-+
T Consensus       865 d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I  943 (1238)
T KOG1127|consen  865 DFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESI  943 (1238)
T ss_pred             cHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHH
Confidence            9999999999887653 3345566555555567788778888887632    2233455555655555566777777766


Q ss_pred             HHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          522 DILADMVTR---------SCKPTEATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       522 ~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      ...+.+...         +.+.+...|...+....+.+.++.|.++..+++
T Consensus       944 ~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  944 NTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            655544321         335556677777777778888888877777654

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.23  E-value=1.6e-08  Score=87.98  Aligned_cols=416  Identities=14%  Similarity=0.104  Sum_probs=248.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHH-HHHHHHHhc
Q 043144          122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYN-TILRTLCDS  199 (580)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~  199 (580)
                      +.+++..+.+..+++.|++++..-.++. +.+......|+.+|....++..|-..++++ ...|...-|. .-.+.+.+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A   91 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA   91 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence            5667777788999999999998887775 557778888999999999999999999998 4445544443 335677788


Q ss_pred             CChhHHHHHHHHHHhCCCCCChhhHHHHH--HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144          200 GKLNLAMEVLHKQLEKECYPDVITYTILI--EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK  277 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  277 (580)
                      +.+..|+.+...|.+.   |+...-..-+  ......+++..+..+.++....|   +..+.+...-...+.|++++|.+
T Consensus        92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq  165 (459)
T KOG4340|consen   92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ  165 (459)
T ss_pred             cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence            9999999998877653   2222111112  22345788888888888776432   45555555556678899999999


Q ss_pred             HHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH----HHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          278 FLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF----NILINFLCRKGLLGRAIDILEKMP  353 (580)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~  353 (580)
                      -|+...+-+--.....|+..+ +..+.+++..|+++..++++.|+...+..-    ...++.- ..|+.   ..+.... 
T Consensus       166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~Sa-  239 (459)
T KOG4340|consen  166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQSA-  239 (459)
T ss_pred             HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHHHH-
Confidence            998887643222334555444 556788899999999999888765433211    0001100 00110   0010000 


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144          354 KHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR-GCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI  432 (580)
Q Consensus       354 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  432 (580)
                            -...++.-...+.+.|+++.|.+.+..|.-+ ....|++|...+.-.- -.+++.+..+-+.-+.+.++ -...
T Consensus       240 ------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~E  311 (459)
T KOG4340|consen  240 ------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPE  311 (459)
T ss_pred             ------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChH
Confidence                  1223455556677899999999988887532 2245777766654322 23455556666666666654 3478


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGLSR-EGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      ||..++-.|++..-++-|-.++.+-.....+ .+...|+ |++++.. .-..++|.+-++.+...-.. .......-+.-
T Consensus       312 TFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~-kLRklAi~vQe  389 (459)
T KOG4340|consen  312 TFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTE-KLRKLAIQVQE  389 (459)
T ss_pred             HHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            8999999999999999998888653222111 1223333 4445443 34567776666555321000 00001111111


Q ss_pred             HHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          511 LCKARQT---YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       511 ~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      -...++-   ..|++-+++.++.    -......-++.|+...++..+.++|+.-.+
T Consensus       390 ~r~~~dd~a~R~ai~~Yd~~LE~----YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  390 ARHNRDDEAIRKAVNEYDETLEK----YLPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHhcccHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            1111111   1122222222222    112334445677888899999999887654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.21  E-value=6e-07  Score=79.95  Aligned_cols=317  Identities=14%  Similarity=0.096  Sum_probs=180.1

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcch-HHHHHH
Q 043144          117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVT-YNTILR  194 (580)
Q Consensus       117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~  194 (580)
                      .++.-..-+...+...|++..|+.-|...++.+ |.+-.++-.-...|...|.-..|+.-+.++ ...||-.. ...-+.
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~  114 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhch
Confidence            344444556666777788888888877777654 334444555566677777777777777766 55666432 334455


Q ss_pred             HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144          195 TLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE  274 (580)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  274 (580)
                      .+.+.|.++.|..-|+..++.+  |+..+             ..++..-+..+.+      -......+..+...|+...
T Consensus       115 vllK~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~  173 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQE------HWVLVQQLKSASGSGDCQN  173 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhh
Confidence            6777788888877777777764  22111             1111111111110      0111122333455677777


Q ss_pred             HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          275 AIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK  354 (580)
Q Consensus       275 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  354 (580)
                      |++....+.+.. +-|...+..-..+|...|++..|+.-++..-+.. ..+...+..+...+...|+.+.++...++.++
T Consensus       174 ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK  251 (504)
T KOG0624|consen  174 AIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK  251 (504)
T ss_pred             HHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc
Confidence            777777766543 4456666666677777777777776666655543 22444555566666677777777777766666


Q ss_pred             CCCCCCHhhHHHH-------------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCChHHHHHH
Q 043144          355 HGCTPNSLSYNPV-------------LHGFCKEKKMDRAIEYLEIMVSRGCYPDIV---TYNTLLTALCKDGKVDVAVEI  418 (580)
Q Consensus       355 ~~~~~~~~~~~~l-------------~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~  418 (580)
                      .  .||.......             +......++|.++++..+.+.+..+.....   .+..+..++...|++.+|+..
T Consensus       252 l--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqq  329 (504)
T KOG0624|consen  252 L--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQ  329 (504)
T ss_pred             c--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHH
Confidence            5  3333211111             112234456666666666666553331111   334445556666677777777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144          419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK  460 (580)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  460 (580)
                      ..++.+.. +.|..++.--..+|.-...++.|+.-|+...+.
T Consensus       330 C~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  330 CKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            66666544 233566666666666666677777777666654

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.20  E-value=1.8e-07  Score=90.96  Aligned_cols=305  Identities=13%  Similarity=0.023  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGC-QPNV-ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF  335 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  335 (580)
                      .|..+...+...|+.+++...+.+..+... .++. .........+...|++++|...+++..+.. |.+...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHH
Confidence            344444444455555554444444332210 1111 111112223445566666666666665542 223323221 111


Q ss_pred             HH----hcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043144          336 LC----RKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK  411 (580)
Q Consensus       336 ~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  411 (580)
                      +.    ..+..+.+.+.++..... .+........+...+...|++++|...+++..+..+. +...+..+..++...|+
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~  163 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGR  163 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCC
Confidence            11    233344444444331111 1112233344455666777777777777777765322 34566666777777777


Q ss_pred             hHHHHHHHHHHHhCCCC-CCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHhCCCHHH
Q 043144          412 VDVAVEILNQLSNKHCS-PVL--ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL-KPDTITY-S--SLVGGLSREGKVDE  484 (580)
Q Consensus       412 ~~~A~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~  484 (580)
                      +++|...+++....... ++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+...|....
T Consensus       164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~  243 (355)
T cd05804         164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV  243 (355)
T ss_pred             HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence            77777777776654321 221  2344566677777777777777777653321 1111111 1  22333334443332


Q ss_pred             HHHH--H-HHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCCH
Q 043144          485 AIKL--F-HDLERLGV-RPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCK--------PTEATYTILIEGIAYEGLA  552 (580)
Q Consensus       485 A~~~--~-~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~  552 (580)
                      +.+.  + ........ ..........+.++...|+.++|...++.+......        ...........++...|++
T Consensus       244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~  323 (355)
T cd05804         244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNY  323 (355)
T ss_pred             HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCH
Confidence            2222  1 11111100 111122234666777888999999988887653211        0122334444566789999


Q ss_pred             HHHHHHHHHHHhCC
Q 043144          553 KEALDLLNQLCSRG  566 (580)
Q Consensus       553 ~~A~~~~~~~~~~g  566 (580)
                      ++|.+.+......+
T Consensus       324 ~~A~~~L~~al~~a  337 (355)
T cd05804         324 ATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998887665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.19  E-value=2.1e-07  Score=90.53  Aligned_cols=154  Identities=10%  Similarity=0.087  Sum_probs=75.8

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHH----hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 043144          231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGIC----KEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGR  306 (580)
Q Consensus       231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  306 (580)
                      +...|++++|.+.+++..+.. +.+...+.. ...+.    ..+..+.+.+.+.... ...+........+...+...|+
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~a~~~~~~G~  129 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDY-PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWA-PENPDYWYLLGMLAFGLEEAGQ  129 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-hHHHHHhcccccCchhHHHHHhccC-cCCCCcHHHHHHHHHHHHHcCC
Confidence            444566666666666655542 112333331 11111    1233334444433311 1111222333344455566666


Q ss_pred             hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CCH--hhHHHHHHHHHhcCCHHHHHHH
Q 043144          307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT-PNS--LSYNPVLHGFCKEKKMDRAIEY  383 (580)
Q Consensus       307 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~A~~~  383 (580)
                      +++|...+++..+.. +.+...+..+...+...|++++|...+++....... ++.  ..|..+...+...|++++|..+
T Consensus       130 ~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~  208 (355)
T cd05804         130 YDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAI  208 (355)
T ss_pred             HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            666666666666653 333445555666666666666666666665554221 111  2234455666666666666666


Q ss_pred             HHHHH
Q 043144          384 LEIMV  388 (580)
Q Consensus       384 ~~~~~  388 (580)
                      +++..
T Consensus       209 ~~~~~  213 (355)
T cd05804         209 YDTHI  213 (355)
T ss_pred             HHHHh
Confidence            66654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.16  E-value=2.5e-07  Score=90.26  Aligned_cols=367  Identities=16%  Similarity=0.140  Sum_probs=201.6

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHH
Q 043144          132 VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHK  211 (580)
Q Consensus       132 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  211 (580)
                      ..++.+|..+|-+   .   .++   ...+.+|.....+++|+.+-+-.+.|.-...-.+.++++...|+-++|-++-  
T Consensus       544 ~kkfk~ae~ifle---q---n~t---e~aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk--  612 (1636)
T KOG3616|consen  544 EKKFKEAEMIFLE---Q---NAT---EEAIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK--  612 (1636)
T ss_pred             HhhhhHHHHHHHh---c---ccH---HHHHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc--
Confidence            3456777777632   1   111   2356778888889999988877765444555667788888899988887642  


Q ss_pred             HHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC------
Q 043144          212 QLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY------  285 (580)
Q Consensus       212 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------  285 (580)
                        .    .+..+ .+.|..|.+.|....|.+....-..  +..|......+..++.+..-+++|-++|+++...      
T Consensus       613 --~----sdgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~  683 (1636)
T KOG3616|consen  613 --E----SDGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALEC  683 (1636)
T ss_pred             --c----ccCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHH
Confidence              1    12222 3567889999998887765422111  1224555555555555555555555555554421      


Q ss_pred             ----------------CCCCCHHHHH-HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 043144          286 ----------------GCQPNVITHN-IILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDI  348 (580)
Q Consensus       286 ----------------~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  348 (580)
                                      .++..+++.. .....+...|+++.|...|-+..         ..-..+.+......|.+|+.+
T Consensus       684 fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~i  754 (1636)
T KOG3616|consen  684 FKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISI  754 (1636)
T ss_pred             HHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhH
Confidence                            0000000000 01111222233333332222110         111223334445566666666


Q ss_pred             HHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144          349 LEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS  428 (580)
Q Consensus       349 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  428 (580)
                      ++.+.....  -..-|..+..-|...|+++.|.++|.+.-         .++..|.+|.+.|+++.|.++-.+...  ..
T Consensus       755 ldniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e  821 (1636)
T KOG3616|consen  755 LDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PE  821 (1636)
T ss_pred             HHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--ch
Confidence            666655422  22234555566666777777776665421         234456667777777777666544432  12


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      .....|.+-..-+-..|++.+|.+++-..   | .|+.     .+..|-+.|..+..+++.++-..   ..-..|-..+.
T Consensus       822 ~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h~---d~l~dt~~~f~  889 (1636)
T KOG3616|consen  822 ATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHHG---DHLHDTHKHFA  889 (1636)
T ss_pred             hHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhCh---hhhhHHHHHHH
Confidence            33444544455555667777776666433   2 3442     35567777777776666555421   11123445566


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQ  561 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  561 (580)
                      .-|-..|+...|.+.|-++-         -|..-++.|..++-|++|.++.+.
T Consensus       890 ~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt  933 (1636)
T KOG3616|consen  890 KELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT  933 (1636)
T ss_pred             HHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence            66777888888877765543         256667778888888888777654

>PF13041 PPR_2: PPR repeat family

Probab=99.16  E-value=1.3e-10  Score=75.61  Aligned_cols=49  Identities=51%  Similarity=0.936  Sum_probs=29.0

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS  477 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  477 (580)
                      ||..+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555566666666666666666666666665555666666666555554

>PF13041 PPR_2: PPR repeat family

Probab=99.16  E-value=1e-10  Score=76.05  Aligned_cols=49  Identities=45%  Similarity=0.959  Sum_probs=28.5

Q ss_pred             CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144          254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC  302 (580)
Q Consensus       254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  302 (580)
                      ||+.+||.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.15  E-value=2.6e-07  Score=93.35  Aligned_cols=435  Identities=10%  Similarity=-0.013  Sum_probs=253.3

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA-VPDVITYNVLISG  163 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~  163 (580)
                      ..|..|...|+...+...|.+-|+.+... .+.+...+....+.|+...+++.|..+.-...+... ..-...|...+-.
T Consensus       493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeL-Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  493 PAFAFLGQIYRDSDDMKRAKKCFDKAFEL-DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            46778888888888999999999999887 566788899999999999999999988443333221 1122334456677


Q ss_pred             HHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-hhHHHHHHHHHhcCCHhHH
Q 043144          164 YCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDV-ITYTILIEATCKESGVGQA  240 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A  240 (580)
                      |...++...|...|+..  -.|.|...|..++.+|...|++..|+++|.++...+  |+. ..-.-.....+..|.+.+|
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr--P~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR--PLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC--cHhHHHHHHHHHHHHHhhhHHHH
Confidence            78888999999999987  335678899999999999999999999999887754  332 2222233445678999999


Q ss_pred             HHHHHHHHHcC------CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH-------hhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144          241 MKLLDEMRNKG------CIPDVVTYNVLVNGICKEGRLDEAIKFLND-------MPSYGCQPNVITHNIILRSMCSTGRW  307 (580)
Q Consensus       241 ~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~~~~~~~~~~~ll~~~~~~~~~  307 (580)
                      ...+..+....      ...-..++-.+...+.-.|-..+|.+.+++       ........+...|..+..+|.-.-..
T Consensus       650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~  729 (1238)
T KOG1127|consen  650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE  729 (1238)
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence            99888876431      011122232233333333333334333333       22222223333333333322111100


Q ss_pred             H--H-HH----HHHHHHHHcCC--------------------CCChhhHHHHHHHHHh----c----CCHHHHHHHHHHh
Q 043144          308 M--D-AE----RLLAEMVLKGC--------------------SPSVVTFNILINFLCR----K----GLLGRAIDILEKM  352 (580)
Q Consensus       308 ~--~-a~----~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~----~----g~~~~a~~~~~~~  352 (580)
                      +  . ..    -++.+....+.                    ..+..+|..++..|.+    .    .+...|+..+.+.
T Consensus       730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka  809 (1238)
T KOG1127|consen  730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA  809 (1238)
T ss_pred             cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence            0  0 00    01111111111                    1233455555554443    1    2234677777776


Q ss_pred             hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144          353 PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI  432 (580)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  432 (580)
                      ++..- .+...|+.|.-. ...|++.-|...|-+-....+ ....+|..+.-.+.+..+++.|...|...+... +.+..
T Consensus       810 V~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~sep-~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl~  885 (1238)
T KOG1127|consen  810 VSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEP-TCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNLV  885 (1238)
T ss_pred             HHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhccc-cchhheeccceeEEecccHHHhhHHHHhhhhcC-chhhH
Confidence            66422 256667766554 556777777777766554422 245578888888888888888888888887765 34455


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH----------HhCCCC
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMR----TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDL----------ERLGVR  498 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~----~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~~  498 (580)
                      .|..........|+.-++..+|..--    ..|-.|+..-|-+........|+.++-+...+.+          .. +.+
T Consensus       886 ~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p  964 (1238)
T KOG1127|consen  886 QWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHP  964 (1238)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCc
Confidence            56555555556777777777766521    1122334333333333444555544433332222          22 122


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          499 PNVITYNSIMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      .+...|...+...-+.+.+..|.+...++
T Consensus       965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  965 QLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            24455655555555666666666655554

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.12  E-value=1.3e-06  Score=77.81  Aligned_cols=318  Identities=14%  Similarity=0.082  Sum_probs=205.1

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH-HHHH
Q 043144          152 PDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY-TILI  228 (580)
Q Consensus       152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~li  228 (580)
                      .++.-..-++..+...|++..|+..|..+  +.+.+..++..-...|...|+...|+.-+.+.++.  +||...- ..-.
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg  113 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence            34444555677777777888888777766  33333445555566777777777777777777664  3553221 1223


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChH
Q 043144          229 EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWM  308 (580)
Q Consensus       229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  308 (580)
                      ..+.+.|.+++|..-|+.++...  |+..+-   ..++.+.-..++-+                .....+..+...|+..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~---~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~  172 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHE--PSNGLV---LEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ  172 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcC--CCcchh---HHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence            44667777777777777777663  221111   11111111111111                1223444567789999


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          309 DAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMV  388 (580)
Q Consensus       309 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  388 (580)
                      .|+.....+++.. +-|...+..-..+|...|++..|+.=++...+...+ +...+.-+-..+...|+.+.++...++.+
T Consensus       173 ~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL  250 (504)
T KOG0624|consen  173 NAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL  250 (504)
T ss_pred             hHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999999999874 568888888899999999999999888777665444 66667777788889999999999999888


Q ss_pred             HCCCCCCHHHH----HHH---------HHHHHhcCChHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHHhCCCHHHHHH
Q 043144          389 SRGCYPDIVTY----NTL---------LTALCKDGKVDVAVEILNQLSNKHCSPVLIT---YNTVIDGLSKVGKTEQAMK  452 (580)
Q Consensus       389 ~~~~~~~~~~~----~~l---------i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~  452 (580)
                      +.  .||...+    ..|         +......+++.++.+-.+...+.........   +..+-.++...|++.+|++
T Consensus       251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq  328 (504)
T KOG0624|consen  251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ  328 (504)
T ss_pred             cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence            75  5665422    111         1123455667777777776666552212222   3344455667788888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144          453 LLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV  497 (580)
Q Consensus       453 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  497 (580)
                      ...+.++.. +.|..++.--..+|.-...++.|+.-|+.+.+.+.
T Consensus       329 qC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~  372 (504)
T KOG0624|consen  329 QCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE  372 (504)
T ss_pred             HHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence            888877642 33467777777788888888888888888877653

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.11  E-value=2.4e-07  Score=90.42  Aligned_cols=109  Identities=16%  Similarity=0.201  Sum_probs=58.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144          298 LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM  377 (580)
Q Consensus       298 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  377 (580)
                      +.+....+.|.+|+.+++.+....  .-..-|..+.+.|+..|+++.|.++|-+.         ..++-.|..|.+.|+|
T Consensus       739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            344455566666666666665442  22234555566666666666666666532         1234455666666666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144          378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL  419 (580)
Q Consensus       378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  419 (580)
                      +.|.++-++..  |+......|..-..-+-+.|++.+|.+++
T Consensus       808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            66666655442  22333334444444455555555555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.08  E-value=1.4e-06  Score=96.03  Aligned_cols=371  Identities=12%  Similarity=0.027  Sum_probs=225.5

Q ss_pred             HHHHHhcCChhHHHHHHHHcCCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144          161 ISGYCRLGEIDNALQVLERMSVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ  239 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  239 (580)
                      ...+...|++.+|.......+..+. ..............|+++.+..+++.+.......+..........+...|++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~  427 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE  427 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence            3344455666666655555432111 011122233455567777777776654221111223333444555667899999


Q ss_pred             HHHHHHHHHHcCC------CCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCCh
Q 043144          240 AMKLLDEMRNKGC------IPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTGRW  307 (580)
Q Consensus       240 A~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~  307 (580)
                      +...+....+.-.      .+.  ......+...+...|++++|...+++........+.    ...+.+...+...|++
T Consensus       428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~  507 (903)
T PRK04841        428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL  507 (903)
T ss_pred             HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence            9999987754310      111  112223345567899999999999887653111121    2345556667789999


Q ss_pred             HHHHHHHHHHHHcCC---CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcC
Q 043144          308 MDAERLLAEMVLKGC---SP--SVVTFNILINFLCRKGLLGRAIDILEKMPKH----GCT--P-NSLSYNPVLHGFCKEK  375 (580)
Q Consensus       308 ~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~  375 (580)
                      ++|...+.+......   .+  .......+...+...|+++.|...+++....    +..  + ....+..+...+...|
T Consensus       508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G  587 (903)
T PRK04841        508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA  587 (903)
T ss_pred             HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence            999999988875311   11  1234455677788899999999988876552    211  1 1233445556677789


Q ss_pred             CHHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHH-----HHHHHHHHhCC
Q 043144          376 KMDRAIEYLEIMVSRG--CYPD--IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCS-PVLITY-----NTVIDGLSKVG  445 (580)
Q Consensus       376 ~~~~A~~~~~~~~~~~--~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~~g  445 (580)
                      ++++|...+.+.....  ..+.  ...+..+...+...|+.+.|...++........ .....+     ...+..+...|
T Consensus       588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  667 (903)
T PRK04841        588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG  667 (903)
T ss_pred             CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence            9999999988875421  1122  234555667788999999999998887542100 111111     11223445688


Q ss_pred             CHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCH
Q 043144          446 KTEQAMKLLEEMRTKGLKPD---TITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRP-NVITYNSIMLGLCKARQT  517 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~  517 (580)
                      +.+.|...+...........   ...+..+..++...|++++|...++++...    +..+ ...+...+..++...|+.
T Consensus       668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~  747 (903)
T PRK04841        668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRK  747 (903)
T ss_pred             CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCH
Confidence            99999999877543211111   112345677888999999999999987542    2222 234566778889999999


Q ss_pred             HHHHHHHHHHHHcC
Q 043144          518 YRAIDILADMVTRS  531 (580)
Q Consensus       518 ~~A~~~~~~~~~~~  531 (580)
                      ++|...+.++++..
T Consensus       748 ~~A~~~L~~Al~la  761 (903)
T PRK04841        748 SEAQRVLLEALKLA  761 (903)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999998753

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.07  E-value=1.3e-06  Score=96.44  Aligned_cols=336  Identities=13%  Similarity=-0.005  Sum_probs=214.1

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--C----CCCH--HHHHHHHHHHH
Q 043144          231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG--C----QPNV--ITHNIILRSMC  302 (580)
Q Consensus       231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~----~~~~--~~~~~ll~~~~  302 (580)
                      ....|+++.+...++.+.......+..........+...|+++++..++......-  .    .+..  .....+...+.
T Consensus       384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~  463 (903)
T PRK04841        384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI  463 (903)
T ss_pred             HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence            44567777777776655321111122333444555677899999999988765421  0    1111  12222334466


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC---CC--CHhhHHHHHHHHHh
Q 043144          303 STGRWMDAERLLAEMVLKGCSPSV----VTFNILINFLCRKGLLGRAIDILEKMPKHGC---TP--NSLSYNPVLHGFCK  373 (580)
Q Consensus       303 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~  373 (580)
                      ..|++++|...++.....-...+.    ...+.+...+...|++++|...+++......   .+  ....+..+...+..
T Consensus       464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~  543 (903)
T PRK04841        464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA  543 (903)
T ss_pred             hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence            799999999999998763111121    2345566677889999999999988765311   11  12344556677888


Q ss_pred             cCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--CHHHHHHHHHHHH
Q 043144          374 EKKMDRAIEYLEIMVSR----GCY--P-DIVTYNTLLTALCKDGKVDVAVEILNQLSNKH--CSP--VLITYNTVIDGLS  442 (580)
Q Consensus       374 ~~~~~~A~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~~  442 (580)
                      .|++++|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+.
T Consensus       544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~  623 (903)
T PRK04841        544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL  623 (903)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence            99999999998876542    211  1 12344556667778899999999998875431  112  2334455666778


Q ss_pred             hCCCHHHHHHHHHHHHHCC--CCCCHHH--H--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 043144          443 KVGKTEQAMKLLEEMRTKG--LKPDTIT--Y--SSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIMLGLCK  513 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~--~~p~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~  513 (580)
                      ..|++++|.+.++......  .......  .  ...+..+...|+.+.|...+...........   ...+..+..++..
T Consensus       624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~  703 (903)
T PRK04841        624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL  703 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence            8999999999998875421  1111111  0  1122444568999999999877654221111   1124567778889


Q ss_pred             cCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          514 ARQTYRAIDILADMVTR----SCKPT-EATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       514 ~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      .|++++|...++++...    +...+ ..+...+..++...|+.++|.+.+.++.+..
T Consensus       704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999988753    22222 3467778888999999999999999998765

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.05  E-value=1.1e-05  Score=81.96  Aligned_cols=383  Identities=14%  Similarity=0.122  Sum_probs=232.6

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHH
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSG--AVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRT  195 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~  195 (580)
                      |+...+..+.++...+-+.+-+++++++.-..  +..+....|.|+-... ..+..+..+..+++.. -|.   -.+...
T Consensus       983 dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdn-yDa---~~ia~i 1057 (1666)
T KOG0985|consen  983 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDN-YDA---PDIAEI 1057 (1666)
T ss_pred             ChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhcc-CCc---hhHHHH
Confidence            33444555566666666666666666655321  1122223333333322 3344555566665521 011   123444


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144          196 LCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA  275 (580)
Q Consensus       196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  275 (580)
                      ....+-+++|..+|++.-     .+......||.   .-+.+++|.+.-+..-      .+.+|..+..+-.+.|.+.+|
T Consensus      1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred             HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence            555566677777765531     23344444443   2355566655544432      467788888888888888888


Q ss_pred             HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          276 IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH  355 (580)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  355 (580)
                      ++-|-+..      |+..|..++....+.|.|++-.+++..+.+....|..  =+.|+-+|++.+++.+.++.+.     
T Consensus      1124 ieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~AyAkt~rl~elE~fi~----- 1190 (1666)
T KOG0985|consen 1124 IESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAYAKTNRLTELEEFIA----- 1190 (1666)
T ss_pred             HHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHHHHhchHHHHHHHhc-----
Confidence            88776543      5667888888888888888888888777766544443  3567788888888777665542     


Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHH
Q 043144          356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYN  435 (580)
Q Consensus       356 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  435 (580)
                        -|+.........-|...|.++.|.-+|..+         .-|..|...+...|++..|.+.-+++      .+..+|-
T Consensus      1191 --gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK 1253 (1666)
T KOG0985|consen 1191 --GPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWK 1253 (1666)
T ss_pred             --CCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHH
Confidence              356667777777788888888887776543         34666777777777777776655544      2356777


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR  515 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  515 (580)
                      .+-.+|...+.+.-|     +|--.++-....-+.-++..|-..|-+++-+.+++...... +.....|+.|+-.|++- 
T Consensus      1254 ~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLE-RAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLE-RAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred             HHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-
Confidence            777777666655443     22222333455567778888888888888888888776433 23566777777777664 


Q ss_pred             CHHHHHHHHHHHHHc-CCC------CCHHHHHHHHHHHHhcCCHHHHH
Q 043144          516 QTYRAIDILADMVTR-SCK------PTEATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       516 ~~~~A~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~A~  556 (580)
                      ++++..+.++-.-.+ +++      .....|..+.-.|.+-..+|.|.
T Consensus      1327 kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred             CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence            356655555443322 111      12456777776676666666553

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.05  E-value=8.1e-09  Score=94.91  Aligned_cols=251  Identities=14%  Similarity=0.135  Sum_probs=127.9

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 043144          264 NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLG  343 (580)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  343 (580)
                      +-+.-.|.+..++.-.+ .....-..+......+.+++...|+++.++.   ++.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            33455677777775554 2222112233344456666777776654432   222222 445555544444443334445


Q ss_pred             HHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144          344 RAIDILEKMPKHGCTP-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQL  422 (580)
Q Consensus       344 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  422 (580)
                      .+..-++........+ +..........+...|++++|++++...      .+.......+..|.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555554443332221 2222222224455567777777666432      24555556666777777777777777777


Q ss_pred             HhCCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          423 SNKHCSPVLITYNTVIDGLS----KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       423 ~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      .+.+  .|... ..+..++.    -.+.+.+|..+|+++.+. ..+++.+++.++.++...|++++|.+++.+..+.++.
T Consensus       158 ~~~~--eD~~l-~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQID--EDSIL-TQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HCCS--CCHHH-HHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             HhcC--CcHHH-HHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            6543  33222 22222222    233567777777776554 3456666677777777777777777777776654433


Q ss_pred             CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHc
Q 043144          499 PNVITYNSIMLGLCKARQT-YRAIDILADMVTR  530 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~  530 (580)
                       +..++..++.+....|+. +.+.+++.++...
T Consensus       234 -~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  234 -DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             -HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             -CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence             455555566555666655 4455566665543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=1.4e-06  Score=86.37  Aligned_cols=256  Identities=13%  Similarity=0.129  Sum_probs=142.6

Q ss_pred             ChhhHHHHHH--HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcC------------CC
Q 043144          118 DIIPCTSLIR--GFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMS------------VA  183 (580)
Q Consensus       118 ~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------~~  183 (580)
                      |..+-..+++  .|...|+.+.|.+-.+.+.      +..+|..+..+|.+..+.+-|.-.+-.|+            ..
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~  798 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN  798 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            3444444443  3566777777776665554      34567777777777776666665555441            11


Q ss_pred             CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHH
Q 043144          184 PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLV  263 (580)
Q Consensus       184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  263 (580)
                      ++ ..-....-.....|.+++|..+|++..+.         ..|=..|-..|.+++|.++-+.--+..   =..+|....
T Consensus       799 ~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA  865 (1416)
T KOG3617|consen  799 GE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYA  865 (1416)
T ss_pred             Cc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHH
Confidence            21 22222333345677788888888776553         234455666788888877765433221   134566666


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 043144          264 NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLG  343 (580)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  343 (580)
                      .-+...++.+.|++.|++...    +-......|.      .++.....+.+.+      .|...|.-..+..-..|+.+
T Consensus       866 ~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~------~d~~L~~WWgqYlES~Gemd  929 (1416)
T KOG3617|consen  866 KYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK------RDESLYSWWGQYLESVGEMD  929 (1416)
T ss_pred             HHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc------cchHHHHHHHHHHhcccchH
Confidence            666677788888888876431    1111111111      1111111122211      23344555555555667777


Q ss_pred             HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144          344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLS  423 (580)
Q Consensus       344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  423 (580)
                      .|+.+|.....         |..++...+-.|+.++|-++-++-      -|......|...|-..|++.+|..+|.+++
T Consensus       930 aAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  930 AALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            77777665432         455666666667777766655432      245555566667777777777777766553

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.9e-05  Score=79.09  Aligned_cols=400  Identities=11%  Similarity=0.131  Sum_probs=199.8

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh-HHHHH---HHH------HHHhCCCC---
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKT-RKATR---VME------IVEDSGAV---  151 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~---~~~------~~~~~~~~---  151 (580)
                      ++...|..-.-+.++..--+.+++..+..|. .|..++|++...|....+- +.-++   .|+      -..++++.   
T Consensus       839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG~-~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~  917 (1666)
T KOG0985|consen  839 FPVDELVEEVEKRNRLKLLLPWLESLIQEGS-QDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLAC  917 (1666)
T ss_pred             CChHHHHHHHHhhhhHHHHHHHHHHHHhccC-cchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEE
Confidence            4556667777777888888888888888864 5777888888887765432 22111   111      11122111   


Q ss_pred             ----------------CCHHHHHHHHHHHHhcCChhHHH-----------HHHHHc-----CCCCCcchHHHHHHHHHhc
Q 043144          152 ----------------PDVITYNVLISGYCRLGEIDNAL-----------QVLERM-----SVAPDVVTYNTILRTLCDS  199 (580)
Q Consensus       152 ----------------~~~~~~~~l~~~~~~~g~~~~A~-----------~~~~~~-----~~~~~~~~~~~l~~~~~~~  199 (580)
                                      .....|....+.+....+.+-=.           ++.++.     +...|+...+..+.++...
T Consensus       918 vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMta  997 (1666)
T KOG0985|consen  918 VAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTA  997 (1666)
T ss_pred             EeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhc
Confidence                            11122333444444444433222           222222     3334566677788888889


Q ss_pred             CChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144          200 GKLNLAMEVLHKQLEKECY--PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK  277 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  277 (580)
                      +-..+-++++++++-.+..  .+...-+.|+-... .-+..+..+..+++-.-+    .   -.+...+..++-+++|..
T Consensus       998 dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAi-kad~trVm~YI~rLdnyD----a---~~ia~iai~~~LyEEAF~ 1069 (1666)
T KOG0985|consen  998 DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAI-KADRTRVMEYINRLDNYD----A---PDIAEIAIENQLYEEAFA 1069 (1666)
T ss_pred             CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHh-hcChHHHHHHHHHhccCC----c---hhHHHHHhhhhHHHHHHH
Confidence            9999999999887754211  12222233332222 233344444444443221    1   112334445555566666


Q ss_pred             HHHHhhhCCC---------------------CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043144          278 FLNDMPSYGC---------------------QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL  336 (580)
Q Consensus       278 ~~~~~~~~~~---------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (580)
                      +|++....+-                     -..+..|..+..+-.+.|...+|++-|-+.      .|+..|..+++..
T Consensus      1070 ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a 1143 (1666)
T KOG0985|consen 1070 IFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVA 1143 (1666)
T ss_pred             HHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHH
Confidence            6655321000                     012223444444444444444444433221      1334444444444


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144          337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV  416 (580)
Q Consensus       337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  416 (580)
                      .+.|.+++-.+.+....+....|  ..=+.++-+|++.++..+..++.       ..|+......+.+-|...|.++.|.
T Consensus      1144 ~~~~~~edLv~yL~MaRkk~~E~--~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAk 1214 (1666)
T KOG0985|consen 1144 SRTGKYEDLVKYLLMARKKVREP--YIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAK 1214 (1666)
T ss_pred             HhcCcHHHHHHHHHHHHHhhcCc--cchHHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHH
Confidence            45555554444444333332222  22233444444444443332221       1234444444444455555555554


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144          417 EILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  496 (580)
                      -+|...         .-|..+...+.+.|+++.|...-++.      .+..||-.+-.+|...+.+.-|.     |-..+
T Consensus      1215 l~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EFrlAQ-----iCGL~ 1274 (1666)
T KOG0985|consen 1215 LLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEFRLAQ-----ICGLN 1274 (1666)
T ss_pred             HHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhhhHHH-----hcCce
Confidence            444332         23555666666666666666554433      25567777777777666554332     22223


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          497 VRPNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      +-....-...++.-|...|-+++-+.+++..+
T Consensus      1275 iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1275 IIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             EEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            33345556778888888888888888777665

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.02  E-value=2.2e-08  Score=92.06  Aligned_cols=46  Identities=22%  Similarity=0.171  Sum_probs=17.4

Q ss_pred             hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP  353 (580)
Q Consensus       307 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  353 (580)
                      +.+|..+|+++.+. .++++.+.+.++.++...|++++|.+++.+..
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al  228 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL  228 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44444444443322 22333334444444444444444444444433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.01  E-value=4.9e-08  Score=92.90  Aligned_cols=221  Identities=18%  Similarity=0.140  Sum_probs=118.2

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      .-.+.++|+..+|.-.|+.++.. .|.+...|-.|.......++-..|+..+.++.+.+ |.+....-.|.-.|...|.-
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkq-dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQ-DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhh-ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence            34566777788888888877776 45667778777777777777777888887777776 55667777777777777777


Q ss_pred             hHHHHHHHHc-CCCCCcchHHHHH---------HHHHhcCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCCHhH
Q 043144          171 DNALQVLERM-SVAPDVVTYNTIL---------RTLCDSGKLNLAMEVLHKQLEK-ECYPDVITYTILIEATCKESGVGQ  239 (580)
Q Consensus       171 ~~A~~~~~~~-~~~~~~~~~~~l~---------~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~  239 (580)
                      .+|+..++.. ...|.. .|....         ..+.....+....++|-++... +..+|......|.-.|.-.|++++
T Consensus       370 ~~Al~~L~~Wi~~~p~y-~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKPKY-VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHhCccc-hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            7777777765 111100 000000         0001111122222333333222 222344444455555555555555


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144          240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN-VITHNIILRSMCSTGRWMDAERLLAEM  317 (580)
Q Consensus       240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~  317 (580)
                      |.+.|+.++...+ -|...||.|...++...+.++|+..|++..+.  +|+ +.+...|.-+|...|.+++|.+.|-.+
T Consensus       449 aiDcf~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  449 AVDCFEAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            5555555554421 14445555555555555555555555555443  222 233344444455555555555544443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=99.00  E-value=5.1e-05  Score=76.62  Aligned_cols=451  Identities=14%  Similarity=0.152  Sum_probs=249.1

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRG--FCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      .....+++..|++...++++..  |+. .+..++.+  +.+.|+.++|..+++.....+ +.|..|...+-.+|...++.
T Consensus        18 d~ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~   93 (932)
T KOG2053|consen   18 DLLDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKL   93 (932)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhh
Confidence            4456778999999999988762  333 23333333  579999999999998877665 44888999999999999999


Q ss_pred             hHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC----------CHhH
Q 043144          171 DNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKES----------GVGQ  239 (580)
Q Consensus       171 ~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----------~~~~  239 (580)
                      ++|..+|++. +..|+......+-.+|++.+.+.+-.++--++-+ ..+.+...+=+++..+...-          -..-
T Consensus        94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            9999999998 5567777777777788888777665444333333 23334555555555544321          1234


Q ss_pred             HHHHHHHHHHcC-CCCCHhHHHHHHHHHHhcCCHHHHHHHHHH-hhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144          240 AMKLLDEMRNKG-CIPDVVTYNVLVNGICKEGRLDEAIKFLND-MPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEM  317 (580)
Q Consensus       240 A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~  317 (580)
                      |.+.++.+.+.+ .--+..-.......+...|++++|++++.. ..+.-...+...-+.-+..+...++|.+..++-.++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            666777776653 221222233334455678999999999943 333322334444456667788889999999999999


Q ss_pred             HHcCCCCChhhHHHHHHHH----------------HhcCCHHHHHHHHHHhhhCCCCCCHhhHH-HHHHHHHhcCCHHHH
Q 043144          318 VLKGCSPSVVTFNILINFL----------------CRKGLLGRAIDILEKMPKHGCTPNSLSYN-PVLHGFCKEKKMDRA  380 (580)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A  380 (580)
                      ...|  +|.  |....+.+                ...+..+...+..++....... ++.... -+..-+..-|+.+++
T Consensus       253 l~k~--~Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~R-gp~LA~lel~kr~~~~gd~ee~  327 (932)
T KOG2053|consen  253 LEKG--NDD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSR-GPYLARLELDKRYKLIGDSEEM  327 (932)
T ss_pred             HHhC--Ccc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccccc-CcHHHHHHHHHHhcccCChHHH
Confidence            9886  232  33222211                1223344444444443332111 222211 122222345777776


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhCCC-----HH
Q 043144          381 IEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI-------TYNTVIDGLSKVGK-----TE  448 (580)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~-----~~  448 (580)
                      ...|-+-.  |-.|-   +..=+..|...=..+.-..++.......  ++..       .+.+.+..-...|.     .+
T Consensus       328 ~~~y~~kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad  400 (932)
T KOG2053|consen  328 LSYYFKKF--GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPAD  400 (932)
T ss_pred             HHHHHHHh--CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChH
Confidence            65553322  11221   1111112222222233333333333221  1110       01111221122221     12


Q ss_pred             HHHHHHHHHH---HCC------CCCCHH---------HHHHHHHHHHhCCCHH---HHHHHHHHHHhCCCCCCHHHHHHH
Q 043144          449 QAMKLLEEMR---TKG------LKPDTI---------TYSSLVGGLSREGKVD---EAIKLFHDLERLGVRPNVITYNSI  507 (580)
Q Consensus       449 ~A~~~~~~m~---~~~------~~p~~~---------~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l  507 (580)
                      .-..++.+..   ++|      .-|+..         +.+.|++.+.+.++..   +|+-+++.-....+. |..+-..+
T Consensus       401 ~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~h-nf~~KLlL  479 (932)
T KOG2053|consen  401 SILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPH-NFQTKLLL  479 (932)
T ss_pred             HHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCc-cHHHHHHH
Confidence            2223332221   112      222222         2356777888877754   455555555544333 56666778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          508 MLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       508 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      +..|+..|-+..|.++|+.+--+++..|.-.+. +...+...|++..+...++..
T Consensus       480 iriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~  533 (932)
T KOG2053|consen  480 IRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH  533 (932)
T ss_pred             HHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence            888888899999999888876555544433322 223445556666665555543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.97  E-value=4e-05  Score=72.97  Aligned_cols=404  Identities=11%  Similarity=0.072  Sum_probs=229.4

Q ss_pred             cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           84 DFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      ..+|+.|++-+... ..+++...++++... .|.....|..-+..-.+..+++....+|.+++..  ..+...|...+..
T Consensus        20 i~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lYl~Y   95 (656)
T KOG1914|consen   20 IDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLYLSY   95 (656)
T ss_pred             HHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHHHHH
Confidence            35899999988777 999999999999876 5666789999999999999999999999999876  3456677776665


Q ss_pred             HHh-cCChhHHHHHHH--------HcCCCC-CcchHHHHHHHHH---------hcCChhHHHHHHHHHHhCCCCCChhhH
Q 043144          164 YCR-LGEIDNALQVLE--------RMSVAP-DVVTYNTILRTLC---------DSGKLNLAMEVLHKQLEKECYPDVITY  224 (580)
Q Consensus       164 ~~~-~g~~~~A~~~~~--------~~~~~~-~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~~~~~~~~~~  224 (580)
                      -.+ .|+...+.+..-        +.+..+ ....|+..+..+-         .+.+++....+|.+++..-+..=...|
T Consensus        96 VR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEkLW  175 (656)
T KOG1914|consen   96 VRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEKLW  175 (656)
T ss_pred             HHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHHHH
Confidence            443 444444333222        224333 2334666554433         333566677778887764221111122


Q ss_pred             HHH------HHHH-------HhcCCHhHHHHHHHHHHH--cCCCCCHh---------------HHHHHHHHHHhcCC---
Q 043144          225 TIL------IEAT-------CKESGVGQAMKLLDEMRN--KGCIPDVV---------------TYNVLVNGICKEGR---  271 (580)
Q Consensus       225 ~~l------i~~~-------~~~g~~~~A~~~~~~~~~--~~~~~~~~---------------~~~~l~~~~~~~g~---  271 (580)
                      +..      |+..       -+...+..|+++++++..  .|......               .|..+|.-=..++-   
T Consensus       176 ~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~t~  255 (656)
T KOG1914|consen  176 KDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLRTL  255 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcccc
Confidence            211      1111       123456677777777653  23221111               14334332111110   


Q ss_pred             ---H--HHHHHHHHHhh-hCCCCCCHHHHHH-----HHHHHHhcCC-------hHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043144          272 ---L--DEAIKFLNDMP-SYGCQPNVITHNI-----ILRSMCSTGR-------WMDAERLLAEMVLKGCSPSVVTFNILI  333 (580)
Q Consensus       272 ---~--~~A~~~~~~~~-~~~~~~~~~~~~~-----ll~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~  333 (580)
                         .  ....-++++.. -.+..|+.....+     .-+.+...|+       -+++..+++.....-...+..+|..+.
T Consensus       256 ~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a  335 (656)
T KOG1914|consen  256 DGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALA  335 (656)
T ss_pred             cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0  00111112211 1122232211110     0111222333       334444555444321122223333332


Q ss_pred             HHHHhc---CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 043144          334 NFLCRK---GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKD  409 (580)
Q Consensus       334 ~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~  409 (580)
                      +.--..   +..+....++++++..-...-..+|..+|+...+..-...|..+|.++.+.+..+ ++.+.++++.-||. 
T Consensus       336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-  414 (656)
T KOG1914|consen  336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-  414 (656)
T ss_pred             hhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence            221111   1244555566655543222233467777777777777888888888888776665 55677777776664 


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHH
Q 043144          410 GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIK  487 (580)
Q Consensus       410 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~  487 (580)
                      ++..-|.++|+.-.+.. ..++.--...++-+.+.++-..|..+|++.+..++.||  ..+|..++.--+.-|++..+.+
T Consensus       415 kD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~  493 (656)
T KOG1914|consen  415 KDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILK  493 (656)
T ss_pred             CChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHH
Confidence            66788888888766544 23334445567777788888888888888887755544  4578888888888888888888


Q ss_pred             HHHHHH
Q 043144          488 LFHDLE  493 (580)
Q Consensus       488 ~~~~~~  493 (580)
                      +-++..
T Consensus       494 lekR~~  499 (656)
T KOG1914|consen  494 LEKRRF  499 (656)
T ss_pred             HHHHHH
Confidence            777764

>PLN02789 farnesyltranstransferase

Probab=98.96  E-value=1.3e-06  Score=81.51  Aligned_cols=218  Identities=10%  Similarity=0.039  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh--HHHH
Q 043144          340 GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKV--DVAV  416 (580)
Q Consensus       340 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--~~A~  416 (580)
                      +..++|+.+..++++..+. +..+|+.-...+...| ++++++..++++.+..++ +..+|+....++.+.|..  +++.
T Consensus        51 e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el  128 (320)
T PLN02789         51 ERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKEL  128 (320)
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHH
Confidence            4444555555555544222 3333443334444444 345555555555544322 223444333333334431  4445


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CC----HHHHHHHH
Q 043144          417 EILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE---GK----VDEAIKLF  489 (580)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A~~~~  489 (580)
                      .+++.+.+.+ +-+..+|+....++...|+++++++.++++++.+. -|...|+.....+.+.   |.    .++...+.
T Consensus       129 ~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~  206 (320)
T PLN02789        129 EFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYT  206 (320)
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHH
Confidence            5555555444 23455555555555555556666666666655442 2444444444333332   11    23445555


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---------------
Q 043144          490 HDLERLGVRPNVITYNSIMLGLCKA----RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG---------------  550 (580)
Q Consensus       490 ~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------  550 (580)
                      .+++...+. |...|+.+...+...    ++..+|.+++.+....+ +.+......|++.|+...               
T Consensus       207 ~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~  284 (320)
T PLN02789        207 IDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAE  284 (320)
T ss_pred             HHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhcccc
Confidence            555554433 455555555555442    23345555555554432 334455555566555421               


Q ss_pred             ---CHHHHHHHHHHHH
Q 043144          551 ---LAKEALDLLNQLC  563 (580)
Q Consensus       551 ---~~~~A~~~~~~~~  563 (580)
                         ..++|.++++.+.
T Consensus       285 ~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        285 ELSDSTLAQAVCSELE  300 (320)
T ss_pred             ccccHHHHHHHHHHHH
Confidence               2356777777774

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.93  E-value=2.9e-07  Score=96.07  Aligned_cols=237  Identities=15%  Similarity=0.025  Sum_probs=151.2

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-H
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKH-GCTP---NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-V  397 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~  397 (580)
                      |.+...|-..|......++.++|+++.++++.. ++.-   -...|.++++.-...|.-+...++|+++.+.   -|+ .
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy---cd~~~ 1531 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY---CDAYT 1531 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh---cchHH
Confidence            344556777777777777777777777776653 1111   1235666666666667777777777777653   233 3


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGL  476 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~  476 (580)
                      .|..|...|.+.+.+++|.++++.|.+..- .....|...++.+.+..+-+.|..++.+.++.-.+ -......-.+..-
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            667777777777777777777777776542 45667777777777777777777777777654111 1233344455555


Q ss_pred             HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHH
Q 043144          477 SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTE--ATYTILIEGIAYEGLAKE  554 (580)
Q Consensus       477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~  554 (580)
                      .+.|+.+.+..+|+......++ ....|+.+++.-.++|+.+.++.+|++.+..++.|-.  ..|...+..=...|+-+.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            6777777777777777655444 4566777777777777777777777777777666653  244455554455666666


Q ss_pred             HHHHHHHHHh
Q 043144          555 ALDLLNQLCS  564 (580)
Q Consensus       555 A~~~~~~~~~  564 (580)
                      +..+-.++.+
T Consensus      1690 vE~VKarA~E 1699 (1710)
T KOG1070|consen 1690 VEYVKARAKE 1699 (1710)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=2.9e-07  Score=87.82  Aligned_cols=254  Identities=11%  Similarity=0.062  Sum_probs=184.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043144          299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMD  378 (580)
Q Consensus       299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  378 (580)
                      .-+.+.|++.+|.-.|+..+..+ |-+...|..|.......++-..|+..+++.++..+. +....-.|...|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHH
Confidence            34667888999999999888875 557788999999999888888999999998887544 6677777888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHH----H-H--HHHHhcCChHHHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          379 RAIEYLEIMVSRGCYPDIVTYNT----L-L--TALCKDGKVDVAVEILNQL-SNKHCSPVLITYNTVIDGLSKVGKTEQA  450 (580)
Q Consensus       379 ~A~~~~~~~~~~~~~~~~~~~~~----l-i--~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~A  450 (580)
                      .|+..++.-+...++ -......    . .  ..+.....+....++|-++ ...+..+|+.+...|.-.|--.|++++|
T Consensus       371 ~Al~~L~~Wi~~~p~-y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPK-YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHHHHHhCcc-chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            899998887664321 0000000    0 0  0011111223333444443 4444457888888999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN-VITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      ..+|+.++... +-|..+||.|...++...+.++|+..|.++.+..  |+ +.+...|.-+|+..|.+++|.+.|-+++.
T Consensus       450 iDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--PGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99999998753 3366789999999999999999999999999864  44 44555677789999999999999887764


Q ss_pred             c---------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144          530 R---------SCKPTEATYTILIEGIAYEGLAKEALDL  558 (580)
Q Consensus       530 ~---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~  558 (580)
                      .         ...++...|..|=.++...++.|-+.+.
T Consensus       527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            2         1122456888888888888887755444

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.91  E-value=1.1e-07  Score=93.04  Aligned_cols=225  Identities=18%  Similarity=0.134  Sum_probs=182.5

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      +|-...-..+...+...|-...|..+|+++         ..|...+.+|...|+..+|..+..+..++  +||+..|..+
T Consensus       395 pp~Wq~q~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~L  463 (777)
T KOG1128|consen  395 PPIWQLQRLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLL  463 (777)
T ss_pred             CCcchHHHHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHh
Confidence            333344456778889999999999999865         35777889999999999999999888874  6899999999


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV  482 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  482 (580)
                      ++......-+++|.++++......       -..+.......++++++.+.|+.-.+.+ +.-..+|-.+..+..+.+++
T Consensus       464 GDv~~d~s~yEkawElsn~~sarA-------~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~  535 (777)
T KOG1128|consen  464 GDVLHDPSLYEKAWELSNYISARA-------QRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKE  535 (777)
T ss_pred             hhhccChHHHHHHHHHhhhhhHHH-------HHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhh
Confidence            998888888899999988765431       1112222234789999999999887764 44567888888888999999


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      +.|.+.|.......+. +...|+.+..+|.+.|+-.+|...++++.+.+ ..+...|...+......|.+++|.+.+.++
T Consensus       536 q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl  613 (777)
T KOG1128|consen  536 QAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL  613 (777)
T ss_pred             HHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence            9999999999886544 78899999999999999999999999999887 666777888888889999999999999999


Q ss_pred             HhCCCC
Q 043144          563 CSRGVV  568 (580)
Q Consensus       563 ~~~g~~  568 (580)
                      ......
T Consensus       614 l~~~~~  619 (777)
T KOG1128|consen  614 LDLRKK  619 (777)
T ss_pred             HHhhhh
Confidence            765433

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.91  E-value=6.6e-05  Score=71.51  Aligned_cols=153  Identities=12%  Similarity=0.061  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144          412 VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP-DTITYSSLVGGLSREGKVDEAIKLFH  490 (580)
Q Consensus       412 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~  490 (580)
                      .+....+++++.......-..+|...+..-.+..-+..|..+|.++.+.+..+ +..+.++++..++ .++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHH
Confidence            55566666666554322224557777777777888899999999998876666 5666777776655 457788999998


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          491 DLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       491 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      .-.+.- ..++..-...+.-+...++-..|+.+|++.+..+++++  ...|..+++-=..-|+...+.++-+++...-
T Consensus       426 LGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af  502 (656)
T KOG1914|consen  426 LGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF  502 (656)
T ss_pred             HHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence            765432 22444446777778888999999999999998866665  4689999988888999999999888876653

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.85  E-value=1.1e-06  Score=76.24  Aligned_cols=119  Identities=8%  Similarity=0.062  Sum_probs=67.0

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhCCC--HHHH
Q 043144          409 DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGL-SREGK--VDEA  485 (580)
Q Consensus       409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A  485 (580)
                      .++.+++...++...+.+ +.+...|..+...|...|++++|...|++..... +.+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            444555555555555444 3445556666666666666666666666665543 22455555555542 44444  3666


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .++++++.+.++. +...+..++..+...|++++|+..|+++++.
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666666655443 4555556666666666666666666666554

>PLN02789 farnesyltranstransferase

Probab=98.84  E-value=9e-06  Score=75.98  Aligned_cols=140  Identities=7%  Similarity=0.044  Sum_probs=65.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 043144          262 LVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG-RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKG  340 (580)
Q Consensus       262 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  340 (580)
                      +-..+...+..++|+.++.++.+.+ +-+..+|+....++...| .+++++..++.+.+.. +.+..+|+.....+.+.|
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence            3334444555566666666555442 223334444444444444 3455555555555443 223334444433343444


Q ss_pred             CH--HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          341 LL--GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA  405 (580)
Q Consensus       341 ~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  405 (580)
                      +.  +++...++++++.... +..+|+.....+...|+++++++.++++++.++. +..+|+....+
T Consensus       121 ~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~v  185 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFV  185 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHH
Confidence            32  3445555555544332 4445555555555555555555555555554333 33344443333

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.83  E-value=4.6e-06  Score=87.52  Aligned_cols=205  Identities=12%  Similarity=0.074  Sum_probs=129.4

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-----IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITY  434 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  434 (580)
                      +...|-..|....+.++.++|.++.++++.. +.+.     ...|.+++..-...|.-+...++|+++.+..  .....|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence            4556666677777777777777777776643 2111     1255566666566666666677777766643  234556


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHh
Q 043144          435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-PNVITYNSIMLGLCK  513 (580)
Q Consensus       435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~  513 (580)
                      ..|...|.+.+.+++|.++++.|.+. +.-....|...+..+.+...-+.|..++.++.+.-++ -+.......+..-.+
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            67777777777777777777777665 2345566777777777777777777777776654222 123344445555566


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144          514 ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  569 (580)
                      .|+.++++.+|+..+.. .|-....|..+++.-.++|+.+.++.+|++++..++.+
T Consensus      1613 ~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             cCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            77777777777776655 35556677777777777777777777777777766654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.82  E-value=1.3e-06  Score=79.38  Aligned_cols=187  Identities=17%  Similarity=0.067  Sum_probs=125.7

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL--ITYN  435 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~  435 (580)
                      ....+..+...+...|+++.|...|+++....+. |. ..++..+..++...|++++|...++.+.+.......  .++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~  111 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY  111 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence            5566777778888889999999998888775322 11 136677788888889999999999888876522111  2344


Q ss_pred             HHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144          436 TVIDGLSKV--------GKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNS  506 (580)
Q Consensus       436 ~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  506 (580)
                      .+..++...        |++++|.+.|+++...  .|+. ..+..+.....    ...      ..        ......
T Consensus       112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~  171 (235)
T TIGR03302       112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRN------RL--------AGKELY  171 (235)
T ss_pred             HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence            555555544        6778888888888765  3332 22221111100    000      00        011235


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          507 IMLGLCKARQTYRAIDILADMVTRS--CKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       507 l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +...|...|++++|+..++++++..  -+.....+..++.++...|++++|..+++.+....
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6677899999999999999998762  12335789999999999999999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.80  E-value=1.5e-06  Score=75.09  Aligned_cols=166  Identities=16%  Similarity=0.060  Sum_probs=133.8

Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHH
Q 043144          115 DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTI  192 (580)
Q Consensus       115 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l  192 (580)
                      .|.|..+ ......+...|+-+.+..+........ +.|......++....+.|++..|...|.+.  ..++|..+|+.+
T Consensus        63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l  140 (257)
T COG5010          63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL  140 (257)
T ss_pred             CcchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence            3445555 667778888898888888887765433 567777777889999999999999999998  567889999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCH
Q 043144          193 LRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRL  272 (580)
Q Consensus       193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  272 (580)
                      +-+|.+.|+++.|...|.+.++.. +.+....+.+.-.+.-.|+++.|..++......+.. |..+-..+.......|++
T Consensus       141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence            999999999999999999998863 335667888888888999999999999988876432 677777788888889999


Q ss_pred             HHHHHHHHHhhh
Q 043144          273 DEAIKFLNDMPS  284 (580)
Q Consensus       273 ~~A~~~~~~~~~  284 (580)
                      ++|..+...-..
T Consensus       219 ~~A~~i~~~e~~  230 (257)
T COG5010         219 REAEDIAVQELL  230 (257)
T ss_pred             HHHHhhcccccc
Confidence            999888766543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.76  E-value=7.8e-07  Score=80.73  Aligned_cols=182  Identities=13%  Similarity=0.030  Sum_probs=128.0

Q ss_pred             cccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH---HH
Q 043144           84 DFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI---IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVI---TY  157 (580)
Q Consensus        84 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~  157 (580)
                      ...+..+...+...|++++|...|++++... |.+.   .++..+..++.+.|++++|...++.+.+..+ .+..   ++
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~a~  110 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHP-NHPDADYAY  110 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCchHHHH
Confidence            3467788889999999999999999998763 2222   4678888999999999999999999987652 2222   56


Q ss_pred             HHHHHHHHhc--------CChhHHHHHHHHc-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 043144          158 NVLISGYCRL--------GEIDNALQVLERM-SVAPDV-VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTIL  227 (580)
Q Consensus       158 ~~l~~~~~~~--------g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  227 (580)
                      ..++.++...        |++++|.+.|+++ ...|+. ..+..+.....    ....       .       ......+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~----~~~~-------~-------~~~~~~~  172 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDY----LRNR-------L-------AGKELYV  172 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHH----HHHH-------H-------HHHHHHH
Confidence            6666666654        7788899999887 333433 23322221111    0000       0       0012246


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          228 IEATCKESGVGQAMKLLDEMRNKGC--IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY  285 (580)
Q Consensus       228 i~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  285 (580)
                      ...+.+.|++++|...++...+...  +.....+..++.++.+.|++++|..+++.+...
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6778899999999999999887632  123567888999999999999999998887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.75  E-value=7.6e-07  Score=87.29  Aligned_cols=217  Identities=15%  Similarity=0.136  Sum_probs=173.8

Q ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043144          257 VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFL  336 (580)
Q Consensus       257 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (580)
                      ..-..+...+...|-..+|..+|+++.         .|...+.+|+..|+..+|..+..+-.++  +||+..|..+.+..
T Consensus       399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~  467 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL  467 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence            344567788899999999999999876         4677888999999999999999888874  78888998888887


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144          337 CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAV  416 (580)
Q Consensus       337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  416 (580)
                      -...-+++|.++.+.....       .-..+.......++++++.+.|+.-.+..+ ....+|-.+..+..+.+++..|.
T Consensus       468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhHHHH
Confidence            7777788888887765332       222233334457899999999998776532 24568888888899999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144          417 EILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER  494 (580)
Q Consensus       417 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  494 (580)
                      +.|....... +.+...||.+..+|.+.|+-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+
T Consensus       540 ~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  540 KAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            9999887765 4457889999999999999999999999999876 44566777777788999999999999998864

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.74  E-value=4.5e-06  Score=86.05  Aligned_cols=133  Identities=14%  Similarity=0.110  Sum_probs=71.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG  474 (580)
Q Consensus       395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  474 (580)
                      +...+..|.....+.|.+++|..+++...+.. +.+......++..+.+.+++++|+..+++..... +-+......+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHH
Confidence            34455555555555566666666665555544 2223444455555555566666666555555542 223444455555


Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ++.+.|++++|..+|+++...++. +..++..+..++...|+.++|...|++..+.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555556666666666655543222 3455555555555556666666655555544

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.72  E-value=6.2e-06  Score=71.34  Aligned_cols=159  Identities=13%  Similarity=0.073  Sum_probs=107.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144          365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV  444 (580)
Q Consensus       365 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  444 (580)
                      ..+-..+...|+-+....+........ ..|.......+....+.|++..|...|++..... ++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            445566666777666666666644332 2255566667777777777777777777777655 56677777777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144          445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDIL  524 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  524 (580)
                      |++++|..-|.+..+.. .-++..++.+...+.-.|+.+.|..++......+.. |..+-..+..+....|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            77777777777777652 224556777777777777777777777777665433 5566666777777777777777765


Q ss_pred             HHH
Q 043144          525 ADM  527 (580)
Q Consensus       525 ~~~  527 (580)
                      ..-
T Consensus       226 ~~e  228 (257)
T COG5010         226 VQE  228 (257)
T ss_pred             ccc
Confidence            544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.70  E-value=1.3e-05  Score=83.58  Aligned_cols=81  Identities=14%  Similarity=0.147  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144          223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC  302 (580)
Q Consensus       223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  302 (580)
                      ++..++.+|-+.|+.++|..+++++++.. +.|+.+.|.++..|... ++++|.+++.+....               +.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence            45555555556666666666666665554 22555566666655555 666666655554432               34


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 043144          303 STGRWMDAERLLAEMVLK  320 (580)
Q Consensus       303 ~~~~~~~a~~~~~~~~~~  320 (580)
                      ..+++..+.+++..+...
T Consensus       181 ~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             hhhcchHHHHHHHHHHhc
Confidence            444555555555555543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.70  E-value=4.1e-06  Score=72.81  Aligned_cols=122  Identities=12%  Similarity=0.126  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 043144          444 VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL-CKARQ--TYRA  520 (580)
Q Consensus       444 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A  520 (580)
                      .++.+++...++..++.+ +.|...|..+...|...|++++|...|+++.+..+. +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            344455555555544443 334555555555555555555555555555554433 445555555442 34444  3555


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          521 IDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      .+++++.++.. +.+...+..++..+...|++++|...++++.+...+
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~  176 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSP  176 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            55555555542 334555555555555555555555555555555443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.70  E-value=1.8e-05  Score=68.48  Aligned_cols=245  Identities=19%  Similarity=0.170  Sum_probs=128.0

Q ss_pred             cCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHH-HHH
Q 043144          167 LGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAM-KLL  244 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~  244 (580)
                      .|.+..++..-+.. ..+.++..-..+.++|...|++.....-.   .. +-.|.......+......-++.+... ++.
T Consensus        21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI---~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~   96 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEI---KE-GKATPLQAVRLLAEYLELESNKKSILASLY   96 (299)
T ss_pred             hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHccccccccccc---cc-ccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence            55555555554444 22233344444555555555544332221   11 11222223333333332333333332 233


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP  324 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  324 (580)
                      +.+.......+......-+..|++.|++++|++......      +......-+..+.+..+++-|.+.++.|.+..   
T Consensus        97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---  167 (299)
T KOG3081|consen   97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---  167 (299)
T ss_pred             HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence            333333222222222233346677777777777766522      22233333444566677777777777777652   


Q ss_pred             ChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144          325 SVVTFNILINFLCR----KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYN  400 (580)
Q Consensus       325 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  400 (580)
                      +..+.+.|+.++.+    .+.+..|.-+|+++.+. .+|++.+.+.+..++...|++++|..+++..+..... ++.++.
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~  245 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLA  245 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHH
Confidence            44556656665554    34567777777777664 4567777777777777777777777777777766443 556666


Q ss_pred             HHHHHHHhcCChHH-HHHHHHHHHhCC
Q 043144          401 TLLTALCKDGKVDV-AVEILNQLSNKH  426 (580)
Q Consensus       401 ~li~~~~~~g~~~~-A~~~~~~~~~~~  426 (580)
                      .++.+-...|...+ ..+.+.++....
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence            66655555555433 334455554433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.70  E-value=1.4e-06  Score=71.48  Aligned_cols=93  Identities=10%  Similarity=-0.079  Sum_probs=49.9

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR  515 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  515 (580)
                      .....+...|++++|...|+...... +.+...|..+..++...|++++|...|+++...++. +...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence            34445555555555555555555442 234455555555555555555555555555554432 4455555555555555


Q ss_pred             CHHHHHHHHHHHHHc
Q 043144          516 QTYRAIDILADMVTR  530 (580)
Q Consensus       516 ~~~~A~~~~~~~~~~  530 (580)
                      ++++|+..+++.++.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            555555555555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=2e-05  Score=68.24  Aligned_cols=137  Identities=15%  Similarity=0.154  Sum_probs=67.4

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hC
Q 043144          369 HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS----KV  444 (580)
Q Consensus       369 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~  444 (580)
                      ..|+..+++++|++......      +......=+..+.+..+++-|...++.|.+.+   +..+.+-|..++.    ..
T Consensus       116 ~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~gg  186 (299)
T KOG3081|consen  116 IIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGG  186 (299)
T ss_pred             HHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccc
Confidence            44555566666666554411      12222222233444555566666666665532   2334444444433    23


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144          445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ  516 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  516 (580)
                      +...+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++++...... ++.+...++.+-...|.
T Consensus       187 ek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK  256 (299)
T ss_pred             hhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence            4455666666666553 3555566666666666666666666666666544433 34444334333333343

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.66  E-value=3.5e-05  Score=66.21  Aligned_cols=203  Identities=14%  Similarity=0.046  Sum_probs=144.2

Q ss_pred             cCCHHHHHHHHHHhhhC---C-CCCCHh-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043144          339 KGLLGRAIDILEKMPKH---G-CTPNSL-SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD  413 (580)
Q Consensus       339 ~g~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  413 (580)
                      ..+.++..+++..++..   | ..++.. .|..++-+....|+.+.|...++++...- +-+..+-..-...+-..|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence            46788888888877653   3 333433 35555667777889999999999987763 223333333333456678899


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE  493 (580)
Q Consensus       414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  493 (580)
                      +|.++++.+.+.+ +.|..++---+.+.-..|+.-+|++-+.+..+. +..|.+.|..+...|...|++++|.-.++++.
T Consensus       104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            9999999998877 455666666666666788888999888888876 56789999999999999999999999999988


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144          494 RLGVRPNVITYNSIMLGLCKAR---QTYRAIDILADMVTRSCKPTEATYTILIEGI  546 (580)
Q Consensus       494 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  546 (580)
                      -..|. ++..+..+...+...|   +.+-|.++|.+.++.+ +.+...+..+.-++
T Consensus       182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~-~~~~ral~GI~lc~  235 (289)
T KOG3060|consen  182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLN-PKNLRALFGIYLCG  235 (289)
T ss_pred             HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC-hHhHHHHHHHHHHH
Confidence            65443 6666777877766655   4677888888888753 23444444444333

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.65  E-value=3.7e-06  Score=69.02  Aligned_cols=98  Identities=9%  Similarity=-0.095  Sum_probs=57.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY  548 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  548 (580)
                      +..+..++...|++++|...|+.+....+. +...|..++.++...|++++|...|+++.... +.+...+..++.++..
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            334455556666666666666666554433 55555666666666666666666666666542 4455566666666666


Q ss_pred             cCCHHHHHHHHHHHHhCCCC
Q 043144          549 EGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       549 ~g~~~~A~~~~~~~~~~g~~  568 (580)
                      .|++++|...+++.++..+.
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~  124 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYA  124 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCC
Confidence            66666666666666655443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.60  E-value=0.0011  Score=67.41  Aligned_cols=196  Identities=18%  Similarity=0.184  Sum_probs=131.0

Q ss_pred             cHHHHHHH--HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           86 ESNNHLRR--LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        86 ~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      .+...+.+  +.+.|+.++|..+++.....+ +.|..+...+-.+|...|..++|..+|++....  .|+......+..+
T Consensus        43 ~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFma  119 (932)
T KOG2053|consen   43 LYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMA  119 (932)
T ss_pred             HHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHH
Confidence            34444444  568899999998888775553 337788889999999999999999999999876  4667777778888


Q ss_pred             HHhcCChhH----HHHHHHHcCCCCCcchHHHHHHHHHhcC-C---------hhHHHHHHHHHHhCC-CCCChhhHHHHH
Q 043144          164 YCRLGEIDN----ALQVLERMSVAPDVVTYNTILRTLCDSG-K---------LNLAMEVLHKQLEKE-CYPDVITYTILI  228 (580)
Q Consensus       164 ~~~~g~~~~----A~~~~~~~~~~~~~~~~~~l~~~~~~~g-~---------~~~A~~~~~~~~~~~-~~~~~~~~~~li  228 (580)
                      |.+.+++.+    |+++++..  +.+...+-++++...+.- .         ..-|...++.+++.+ ...+..-...-.
T Consensus       120 yvR~~~yk~qQkaa~~LyK~~--pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl  197 (932)
T KOG2053|consen  120 YVREKSYKKQQKAALQLYKNF--PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYL  197 (932)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC--CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence            988877654    55566543  445566556666555421 1         233455566666554 111111122222


Q ss_pred             HHHHhcCCHhHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          229 EATCKESGVGQAMKLLDE-MRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG  286 (580)
Q Consensus       229 ~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  286 (580)
                      ......|++++|+.++.. ..+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus       198 ~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  198 LILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            334467889999999943 3343233345555667778888999999998888888765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.57  E-value=6e-05  Score=78.72  Aligned_cols=59  Identities=10%  Similarity=0.013  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMP  353 (580)
Q Consensus       293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  353 (580)
                      .+..+..+|-+.|+.+++...++++++.. +.|+.+.|.++..|... ++++|.+++.+..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV  176 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAI  176 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence            44444555555555555555555555543 33444555555555544 5555555544443

>PF12854 PPR_1: PPR repeat

Probab=98.55  E-value=1.5e-07  Score=54.76  Aligned_cols=32  Identities=59%  Similarity=1.224  Sum_probs=19.1

Q ss_pred             CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          251 GCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM  282 (580)
Q Consensus       251 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  282 (580)
                      |+.||..+|+.||.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45556666666666666666666666666555

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.53  E-value=1.4e-05  Score=82.57  Aligned_cols=134  Identities=9%  Similarity=0.003  Sum_probs=108.8

Q ss_pred             CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC-CcchHHHH
Q 043144          115 DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAP-DVVTYNTI  192 (580)
Q Consensus       115 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l  192 (580)
                      .+.+...+..|+....+.|.+++|..+++.+.+.. |.+......++..+.+.+++++|+..+++. ...| +......+
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~  160 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLE  160 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHH
Confidence            56667888888888889999999999999888875 556677788888888899999999998887 3334 45567778


Q ss_pred             HHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144          193 LRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK  250 (580)
Q Consensus       193 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  250 (580)
                      ..++.+.|++++|..+|+++...+ +-+..++..+...+...|+.++|...|+...+.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888888999999999999988743 334778888888888899999999999888765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.53  E-value=5.4e-06  Score=67.77  Aligned_cols=99  Identities=21%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI  546 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  546 (580)
                      .....+...+...|++++|.+.|+.+...++. +...+..+..++...|++++|...+++..+.+ +.+...+..++.++
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~   95 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECL   95 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            33444555566666666666666666554432 55566666666666666666666666665543 44556666666666


Q ss_pred             HhcCCHHHHHHHHHHHHhCCC
Q 043144          547 AYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       547 ~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ...|++++|...+++..+..+
T Consensus        96 ~~~g~~~~A~~~~~~al~~~p  116 (135)
T TIGR02552        96 LALGEPESALKALDLAIEICG  116 (135)
T ss_pred             HHcCCHHHHHHHHHHHHHhcc
Confidence            666666666666666666553

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=0.00016  Score=62.31  Aligned_cols=200  Identities=17%  Similarity=0.130  Sum_probs=147.0

Q ss_pred             hcCChHHHHHHHHHHHHc---C-CCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144          303 STGRWMDAERLLAEMVLK---G-CSPSVV-TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM  377 (580)
Q Consensus       303 ~~~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  377 (580)
                      ...+.++..+++.+++..   | ..++.. .+..++-+....|+.+.|...++.+... ++-+..+-..-.-.+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhch
Confidence            457789999999888753   3 334443 4555666667789999999999998776 332333333333445568999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144          378 DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEM  457 (580)
Q Consensus       378 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  457 (580)
                      ++|+++|+.+++.++. |..++..-+...-..|+--+|++-+....+.. ..|...|..+...|...|++++|.-+++++
T Consensus       103 ~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F-~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDKF-MNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            9999999999987633 66677777777788888889998888887754 578999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144          458 RTKGLKPDTITYSSLVGGLSREG---KVDEAIKLFHDLERLGVRPNVITYNSI  507 (580)
Q Consensus       458 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l  507 (580)
                      +-.. +-++..+..+...+...|   +++.+.++|.+..+..++ +...+..+
T Consensus       181 ll~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~-~~ral~GI  231 (289)
T KOG3060|consen  181 LLIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK-NLRALFGI  231 (289)
T ss_pred             HHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH-hHHHHHHH
Confidence            8753 334455566666554443   678899999999887543 44444433

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=1.2e-05  Score=75.83  Aligned_cols=142  Identities=13%  Similarity=0.118  Sum_probs=92.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144           89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG  168 (580)
Q Consensus        89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  168 (580)
                      -..-.+...|++++|+..++.++.. .|.|...+......+.+.++..+|.+.++++.... |.....+..+..+|.+.|
T Consensus       311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~-P~~~~l~~~~a~all~~g  388 (484)
T COG4783         311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALD-PNSPLLQLNLAQALLKGG  388 (484)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHhcC
Confidence            3344555667777777777776655 45566666666677777777777777777777664 333556666777777777


Q ss_pred             ChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 043144          169 EIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDE  246 (580)
Q Consensus       169 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  246 (580)
                      ++.+|+.+++..  ..+.|+..|..|.++|...|+..++....-                  ..|...|++++|...+..
T Consensus       389 ~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         389 KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHHHHHHH
Confidence            777777777665  445566777777777777777666655432                  334455777777777766


Q ss_pred             HHHc
Q 043144          247 MRNK  250 (580)
Q Consensus       247 ~~~~  250 (580)
                      ..+.
T Consensus       451 A~~~  454 (484)
T COG4783         451 ASQQ  454 (484)
T ss_pred             HHHh
Confidence            6654

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.46  E-value=0.00012  Score=69.21  Aligned_cols=110  Identities=18%  Similarity=0.192  Sum_probs=50.8

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHH
Q 043144          372 CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-LITYNTVIDGLSKVGKTEQA  450 (580)
Q Consensus       372 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A  450 (580)
                      ...|++++|+..+..++...+ -|++.+....+.+.+.++..+|.+.++.+....  |+ ....-.+..+|.+.|++.+|
T Consensus       317 ~~~~~~d~A~~~l~~L~~~~P-~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~--P~~~~l~~~~a~all~~g~~~ea  393 (484)
T COG4783         317 YLAGQYDEALKLLQPLIAAQP-DNPYYLELAGDILLEANKAKEAIERLKKALALD--PNSPLLQLNLAQALLKGGKPQEA  393 (484)
T ss_pred             HHhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHhcCChHHH
Confidence            344555555555555444321 133344444444555555555555555554443  22 33344444455555555555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA  485 (580)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A  485 (580)
                      ..+++...... +-|+..|..|..+|...|+..++
T Consensus       394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a  427 (484)
T COG4783         394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEA  427 (484)
T ss_pred             HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHH
Confidence            55555444432 33444555555555555544433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.45  E-value=6.6e-06  Score=67.23  Aligned_cols=108  Identities=15%  Similarity=0.129  Sum_probs=68.6

Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCC
Q 043144          107 LESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAP  184 (580)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~  184 (580)
                      +++++.. .|.+......++..+...|++++|...|+.+...+ +.+...+..++..+...|++++|...+++.  ..+.
T Consensus         6 ~~~~l~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         6 LKDLLGL-DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             HHHHHcC-ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            4444443 22334455566666777777777777777776655 456666667777777777777777777666  2233


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      +...+..+...+...|++++|...|+..++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            45566666667777777777777777666643

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12854 PPR_1: PPR repeat

Probab=98.43  E-value=3.9e-07  Score=52.98  Aligned_cols=30  Identities=43%  Similarity=0.934  Sum_probs=12.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144          462 LKPDTITYSSLVGGLSREGKVDEAIKLFHD  491 (580)
Q Consensus       462 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  491 (580)
                      +.||..||+.|+.+|++.|++++|.++|++
T Consensus         3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~   32 (34)
T PF12854_consen    3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE   32 (34)
T ss_pred             CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            334444444444444444444444444433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=0.0012  Score=65.17  Aligned_cols=205  Identities=10%  Similarity=0.084  Sum_probs=122.7

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHH----------hcCChhHHHHHHHHHHhCCCCCC
Q 043144          151 VPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLC----------DSGKLNLAMEVLHKQLEKECYPD  220 (580)
Q Consensus       151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~A~~~~~~~~~~~~~~~  220 (580)
                      .|.+..|..|.......-+++.|...|-+.+.-+.......|.....          --|++++|.++|-.+-+++    
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD----  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD----  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh----
Confidence            57778888777777777777788777777643333322222222222          2467777777776654432    


Q ss_pred             hhhHHHHHHHHHhcCCHhHHHHHHHHHHHc-CCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHH
Q 043144          221 VITYTILIEATCKESGVGQAMKLLDEMRNK-GCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILR  299 (580)
Q Consensus       221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~  299 (580)
                           ..|..+.+.|++-...++++.--.. .-..-...|+.+...+.....+++|.+.|..-..         ....+.
T Consensus       765 -----LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~~e  830 (1189)
T KOG2041|consen  765 -----LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQIE  830 (1189)
T ss_pred             -----hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhHHH
Confidence                 3456666777776666665432110 0001134677777777777788888888766542         123455


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHH
Q 043144          300 SMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDR  379 (580)
Q Consensus       300 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  379 (580)
                      ++....++++-+.+.+.+     +.+....-.+.+++.+.|.-++|.+.|-+-..   +      ...+..|...++|.+
T Consensus       831 cly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~---p------kaAv~tCv~LnQW~~  896 (1189)
T KOG2041|consen  831 CLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL---P------KAAVHTCVELNQWGE  896 (1189)
T ss_pred             HHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC---c------HHHHHHHHHHHHHHH
Confidence            566666665555444433     44556677788888888888888877644321   1      234566777777777


Q ss_pred             HHHHHHHH
Q 043144          380 AIEYLEIM  387 (580)
Q Consensus       380 A~~~~~~~  387 (580)
                      |.++-+..
T Consensus       897 avelaq~~  904 (1189)
T KOG2041|consen  897 AVELAQRF  904 (1189)
T ss_pred             HHHHHHhc
Confidence            77765543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=2.4e-05  Score=64.57  Aligned_cols=125  Identities=15%  Similarity=0.151  Sum_probs=82.5

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD---IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD--VITYNVL  160 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l  160 (580)
                      .|..++..+ ..++...+...++.+.... +.+   ......+...+...|++++|...|+.+......++  ......|
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 4777778877788777652 223   23344566777788888888888888887652232  2344556


Q ss_pred             HHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHH
Q 043144          161 ISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQ  212 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  212 (580)
                      ...+...|++++|+..++.. +.......+...+.++.+.|++++|...|+..
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            77777888888888888765 22334455667777788888888888777654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.35  E-value=3.7e-05  Score=63.41  Aligned_cols=125  Identities=15%  Similarity=0.123  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHH
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD---TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--VITYNSIM  508 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~  508 (580)
                      |..++..+ ..++...+...++.+.... +.+   ....-.+...+...|++++|...|+.+......|+  ......|.
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            44444444 3777788888888887753 222   22334455677888888888888888887653333  23445677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      ..+...|++++|+..++.....  ...+..+...+++|.+.|++++|+..|++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            8888888999998888664332  334556777888888999999998888765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.31  E-value=3.3e-05  Score=73.73  Aligned_cols=123  Identities=18%  Similarity=0.161  Sum_probs=57.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      ..|+..+...++++.|..+|+++.+..  |+  ....++..+...++..+|.+++++.+... +-+...+..-...+.+.
T Consensus       173 ~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  173 DTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            334444444455555555555555443  22  22234444444445555555555554432 22344444444444455


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       480 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      ++++.|+.+.+++.+..+. +..+|..|+.+|...|+++.|+..+..+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            5555555555555443322 34455555555555555555554444443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.23  E-value=6.2e-05  Score=71.88  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=104.3

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDG  440 (580)
Q Consensus       361 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  440 (580)
                      ......++..+...++++.|+.+++++.+..  |+.  ...++..+...++-.+|.+++++..... +.+......-...
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF  243 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3445666777777899999999999998873  554  4457777888888999999999988655 4456777777788


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144          441 LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL  495 (580)
Q Consensus       441 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  495 (580)
                      +...++++.|+.+.+++.... +-+-.+|..|..+|...|+++.|+-.+..+.-.
T Consensus       244 Ll~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            899999999999999999863 335569999999999999999999999887543

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.15  E-value=4.9e-06  Score=61.21  Aligned_cols=81  Identities=20%  Similarity=0.264  Sum_probs=54.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144          479 EGKVDEAIKLFHDLERLGVR-PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD  557 (580)
Q Consensus       479 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  557 (580)
                      .|+++.|+.+++++.+..+. ++...+..++.+|.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            47788888888888765442 2455566678888888888888888877 3221 2234555666788888888888888


Q ss_pred             HHHH
Q 043144          558 LLNQ  561 (580)
Q Consensus       558 ~~~~  561 (580)
                      .+++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            8775

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.12  E-value=0.00011  Score=59.35  Aligned_cols=92  Identities=11%  Similarity=-0.091  Sum_probs=50.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144          472 LVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL  551 (580)
Q Consensus       472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  551 (580)
                      +...+...|++++|.++|+-+....+. +..-|..|.-++...|++++|+..|..+.... +.++..+..++.++...|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence            344445555666666665555544433 44455555555555556666666665555443 4445555555555566666


Q ss_pred             HHHHHHHHHHHHhC
Q 043144          552 AKEALDLLNQLCSR  565 (580)
Q Consensus       552 ~~~A~~~~~~~~~~  565 (580)
                      .+.|++.|+..+..
T Consensus       119 ~~~A~~aF~~Ai~~  132 (157)
T PRK15363        119 VCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66666655555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.11  E-value=6.9e-05  Score=56.58  Aligned_cols=96  Identities=17%  Similarity=0.122  Sum_probs=62.3

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY  548 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  548 (580)
                      +..+...+...|++++|...++++.+..+. +...+..++.++...|++++|.+.+++..+.. +.+..++..++..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            344555666667777777777776654332 34556666667777777777777777766553 4444566677777777


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 043144          549 EGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       549 ~g~~~~A~~~~~~~~~~g  566 (580)
                      .|+++.|...+++..+.+
T Consensus        81 ~~~~~~a~~~~~~~~~~~   98 (100)
T cd00189          81 LGKYEEALEAYEKALELD   98 (100)
T ss_pred             HHhHHHHHHHHHHHHccC
Confidence            777777777777766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=0.0012  Score=61.22  Aligned_cols=229  Identities=17%  Similarity=0.083  Sum_probs=130.0

Q ss_pred             hhHHHH-HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H
Q 043144          327 VTFNIL-INFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNT---L  402 (580)
Q Consensus       327 ~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~---l  402 (580)
                      ..+..+ ..++.-.|+.++|.++--.+++.... +......-..++...++.+.|...|++.+..  .|+...-..   .
T Consensus       169 ~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~  245 (486)
T KOG0550|consen  169 FKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSASMM  245 (486)
T ss_pred             hHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhHhhh
Confidence            344333 24556688888888887777766322 2222222234555678889999999988876  455442222   2


Q ss_pred             HHH----------HHhcCChHHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-
Q 043144          403 LTA----------LCKDGKVDVAVEILNQLSNKH---CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT-  468 (580)
Q Consensus       403 i~~----------~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-  468 (580)
                      ...          ..+.|++..|.+.+.+....+   ..++...|........+.|+..+|+.--++..+.+   +..+ 
T Consensus       246 ~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syik  322 (486)
T KOG0550|consen  246 PKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIK  322 (486)
T ss_pred             HHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHH
Confidence            211          346788888888888877654   33555667777777778888888888887776542   1222 


Q ss_pred             -HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          469 -YSSLVGGLSREGKVDEAIKLFHDLERLGVRP-NVITYNSIMLGLCKARQ--TYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       469 -~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                       |..-..++...+.|++|.+-+++..+....+ ...++.....++-+.++  +-..+.+-+   .....+....|..+.-
T Consensus       323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~---~as~~eikkayrk~AL  399 (486)
T KOG0550|consen  323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISR---NASDDEIKKAYRKLAL  399 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhh---hcccchhhhHHHHHHH
Confidence             2222334556677888888888876543222 22333333333333222  222222222   2223455566665544


Q ss_pred             HH---HhcCCHHHHHHHHHHHHh
Q 043144          545 GI---AYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       545 ~~---~~~g~~~~A~~~~~~~~~  564 (580)
                      .+   ...|.-.+|...|+.+-+
T Consensus       400 ~~Hpd~~agsq~eaE~kFkevge  422 (486)
T KOG0550|consen  400 VHHPDKNAGSQKEAEAKFKEVGE  422 (486)
T ss_pred             HhCCCcCcchhHHHHHHHHHHHH
Confidence            44   345555677777766543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.04  E-value=6.8e-05  Score=56.61  Aligned_cols=92  Identities=21%  Similarity=0.257  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      +..+...+...|++++|+..++++... .+.+...+..+...+...|++++|.+.|+...... +.+..++..++..+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            344555666666777777777666654 23333555666666666666666666666666554 3344555566666666


Q ss_pred             cCChhHHHHHHHHc
Q 043144          167 LGEIDNALQVLERM  180 (580)
Q Consensus       167 ~g~~~~A~~~~~~~  180 (580)
                      .|++++|...+.+.
T Consensus        81 ~~~~~~a~~~~~~~   94 (100)
T cd00189          81 LGKYEEALEAYEKA   94 (100)
T ss_pred             HHhHHHHHHHHHHH
Confidence            66666666666554

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.04  E-value=0.00021  Score=56.76  Aligned_cols=100  Identities=13%  Similarity=0.022  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVR-P-NVITYNSIMLGLCKARQTYRAIDILADMVTRSC--KPTEATYTILI  543 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~  543 (580)
                      ++..++..+.+.|++++|...|..+.+..+. + ....+..++.++...|++++|...++++....-  +....++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555666667777777777776653322 1 133455566667777777777777777665421  11245566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          544 EGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      .++...|++++|.+.++++.+..+
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCc
Confidence            777777777777777777776653

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.02  E-value=0.00017  Score=69.33  Aligned_cols=92  Identities=12%  Similarity=-0.030  Sum_probs=78.6

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144          437 VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ  516 (580)
Q Consensus       437 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  516 (580)
                      -...+...|++++|+.+|+++++.. +.+...|..+..+|...|++++|+..++++.+..+. +...|..++.+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence            3455678899999999999999874 346778888889999999999999999999887654 67788889999999999


Q ss_pred             HHHHHHHHHHHHHc
Q 043144          517 TYRAIDILADMVTR  530 (580)
Q Consensus       517 ~~~A~~~~~~~~~~  530 (580)
                      +++|+..++++++.
T Consensus        86 ~~eA~~~~~~al~l   99 (356)
T PLN03088         86 YQTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999875

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.0055  Score=56.96  Aligned_cols=274  Identities=12%  Similarity=-0.001  Sum_probs=150.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144           89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG  168 (580)
Q Consensus        89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  168 (580)
                      .....+.+...+.+|+..+..++.. .|.+...|..-+..+...|++++|.--.+.-+... +-.+..+.....++...+
T Consensus        54 ~~gn~~yk~k~Y~nal~~yt~Ai~~-~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~k-d~~~k~~~r~~~c~~a~~  131 (486)
T KOG0550|consen   54 EEGNAFYKQKTYGNALKNYTFAIDM-CPDNASYYSNRAATLMMLGRFEEALGDARQSVRLK-DGFSKGQLREGQCHLALS  131 (486)
T ss_pred             hhcchHHHHhhHHHHHHHHHHHHHh-CccchhhhchhHHHHHHHHhHhhcccchhhheecC-CCccccccchhhhhhhhH
Confidence            3455677777788888888888776 33445555555556666777777665554444332 222334444555555555


Q ss_pred             ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCChhhHHHHH-HHHHhcCCHhHHHHHHHH
Q 043144          169 EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC-YPDVITYTILI-EATCKESGVGQAMKLLDE  246 (580)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~li-~~~~~~g~~~~A~~~~~~  246 (580)
                      +..+|.+.++.-      ..+           ....|+..++....... +|....+..+- .++.-.|++++|.++--.
T Consensus       132 ~~i~A~~~~~~~------~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~  194 (486)
T KOG0550|consen  132 DLIEAEEKLKSK------QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAID  194 (486)
T ss_pred             HHHHHHHHhhhh------hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHH
Confidence            555555555421      000           01112222222222111 12233333332 334456777777777666


Q ss_pred             HHHcCCCCCHhHHHHHHH--HHHhcCCHHHHHHHHHHhhhCCCCCCHHH-------------HHHHHHHHHhcCChHHHH
Q 043144          247 MRNKGCIPDVVTYNVLVN--GICKEGRLDEAIKFLNDMPSYGCQPNVIT-------------HNIILRSMCSTGRWMDAE  311 (580)
Q Consensus       247 ~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~~ll~~~~~~~~~~~a~  311 (580)
                      +++..   ....+..+++  ++.-.++.+.|...|++....+  |+...             +..-..-..+.|.+..|.
T Consensus       195 ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~  269 (486)
T KOG0550|consen  195 ILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAY  269 (486)
T ss_pred             HHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHH
Confidence            66542   1122222222  3344667777777777766542  32211             112223355778888888


Q ss_pred             HHHHHHHHcC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH---HHHHHHHHhcCCHHHHHHHHH
Q 043144          312 RLLAEMVLKG---CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY---NPVLHGFCKEKKMDRAIEYLE  385 (580)
Q Consensus       312 ~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~  385 (580)
                      +.|.+.+..+   ..++...|........+.|+..+|+.-.+...+.    |+.-.   ..-..++...++|++|.+-|+
T Consensus       270 E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~  345 (486)
T KOG0550|consen  270 ECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYE  345 (486)
T ss_pred             HHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888887652   3344455666666677788888888888877765    33322   222355666778888888888


Q ss_pred             HHHHC
Q 043144          386 IMVSR  390 (580)
Q Consensus       386 ~~~~~  390 (580)
                      +..+.
T Consensus       346 ~a~q~  350 (486)
T KOG0550|consen  346 KAMQL  350 (486)
T ss_pred             HHHhh
Confidence            77765

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.97  E-value=0.02  Score=56.91  Aligned_cols=73  Identities=18%  Similarity=0.087  Sum_probs=42.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH----------HHhcC
Q 043144           99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG----------YCRLG  168 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g  168 (580)
                      -.++|.++.+      ..|.++.|..++......-.++.|...|-+...   .+....-..|...          -+--|
T Consensus       678 gledA~qfiE------dnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g  748 (1189)
T KOG2041|consen  678 GLEDAIQFIE------DNPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYG  748 (1189)
T ss_pred             chHHHHHHHh------cCCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhc
Confidence            3455555544      357888888888887777777778777765443   2222111111111          11246


Q ss_pred             ChhHHHHHHHHc
Q 043144          169 EIDNALQVLERM  180 (580)
Q Consensus       169 ~~~~A~~~~~~~  180 (580)
                      ++++|.++|-.+
T Consensus       749 ~feeaek~yld~  760 (1189)
T KOG2041|consen  749 EFEEAEKLYLDA  760 (1189)
T ss_pred             chhHhhhhhhcc
Confidence            777777777666

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.96  E-value=0.0002  Score=57.89  Aligned_cols=97  Identities=8%  Similarity=-0.049  Sum_probs=75.5

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHH
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRT  195 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~  195 (580)
                      +......+...+...|++++|..+|+.+...+ +.+..-|..|+.++-..|++++|+..|...  -.+.|+..+..++.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c  112 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAEC  112 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHH
Confidence            34455566667788888888888888888776 667777788888888888888888888887  224567778888888


Q ss_pred             HHhcCChhHHHHHHHHHHhC
Q 043144          196 LCDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       196 ~~~~g~~~~A~~~~~~~~~~  215 (580)
                      +.+.|+.+.|.+.|+..+..
T Consensus       113 ~L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        113 YLACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888877654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.96  E-value=0.00017  Score=69.33  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=76.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL  167 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (580)
                      ......+...|++++|+..|++++.. .+.+...|..+..+|.+.|++++|+..+++++... +.+...|..++.+|...
T Consensus         6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~-~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          6 EDKAKEAFVDDDFALAVDLYTQAIDL-DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence            34456777888888898888888876 45567778888888888888888888888888876 56777888888888888


Q ss_pred             CChhHHHHHHHHc-CCCCCcc
Q 043144          168 GEIDNALQVLERM-SVAPDVV  187 (580)
Q Consensus       168 g~~~~A~~~~~~~-~~~~~~~  187 (580)
                      |++++|+..|+++ ...|+..
T Consensus        84 g~~~eA~~~~~~al~l~P~~~  104 (356)
T PLN03088         84 EEYQTAKAALEKGASLAPGDS  104 (356)
T ss_pred             CCHHHHHHHHHHHHHhCCCCH
Confidence            8888888888887 4444433

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.95  E-value=0.018  Score=54.37  Aligned_cols=431  Identities=14%  Similarity=0.156  Sum_probs=211.6

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCC-----ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 043144           93 RLVRNGELEEGFKFLESMVYHGDIP-----DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG--YC  165 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~  165 (580)
                      .+.+++++.+|.++|.+..+.....     .....+.++++|... +.+.....+....+.- +...  |..|..+  +-
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~-~~s~--~l~LF~~L~~Y   90 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQF-GKSA--YLPLFKALVAY   90 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhc-CCch--HHHHHHHHHHH
Confidence            4567899999999999987762211     123345667776643 4555555555554432 2222  3333333  34


Q ss_pred             hcCChhHHHHHHHHc-----CCC------------CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC----CCCChhhH
Q 043144          166 RLGEIDNALQVLERM-----SVA------------PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE----CYPDVITY  224 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-----~~~------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~  224 (580)
                      +.+++.+|++.+...     +..            +|...-+..+..+...|++.+++.+++++...-    ...+..+|
T Consensus        91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y  170 (549)
T PF07079_consen   91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY  170 (549)
T ss_pred             HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence            688999999887765     111            111122455677889999999999988887653    33678888


Q ss_pred             HHHHHHHHhcC--------CHhHHHHHH-------HHHHHc------CCCCCHhHHHHHHHHHHhc--CCHHHHHHHHHH
Q 043144          225 TILIEATCKES--------GVGQAMKLL-------DEMRNK------GCIPDVVTYNVLVNGICKE--GRLDEAIKFLND  281 (580)
Q Consensus       225 ~~li~~~~~~g--------~~~~A~~~~-------~~~~~~------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~  281 (580)
                      +.++-.+.+.-        ..+-+...|       +++...      .+.|.......++....-.  .+..--.+++..
T Consensus       171 d~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~  250 (549)
T PF07079_consen  171 DRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILEN  250 (549)
T ss_pred             HHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHH
Confidence            87665554321        111111111       111111      1122222222222221111  111112222222


Q ss_pred             hhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          282 MPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAEMVLKGCS----PSVVTFNILINFLCRKGLLGRAIDILEKMPKHG  356 (580)
Q Consensus       282 ~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  356 (580)
                      ....-+.|+.. ....+...+..  +.+++..+-+.+....+.    .=..+|..++....+.++...|.+.+.-+.-. 
T Consensus       251 We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l-  327 (549)
T PF07079_consen  251 WENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL-  327 (549)
T ss_pred             HHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-
Confidence            22222344422 12222222222  444444443333322110    12346777777777888888888777666554 


Q ss_pred             CCCCHhhH-------HHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH---HHHHhcCC-hHHHHHHHH
Q 043144          357 CTPNSLSY-------NPVLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIV-TYNTLL---TALCKDGK-VDVAVEILN  420 (580)
Q Consensus       357 ~~~~~~~~-------~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li---~~~~~~g~-~~~A~~~~~  420 (580)
                       +|+...-       ..+.+..+.    .-+...-+.+|+.....++  |.. ....|+   .-+-+.|. -++|+++++
T Consensus       328 -dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk  404 (549)
T PF07079_consen  328 -DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLK  404 (549)
T ss_pred             -CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence             2222211       111122221    1122233455555544422  221 111222   22344444 677777777


Q ss_pred             HHHhCCCCCCHHHHHH----HHHHHHh---CCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHH--HHhCCCHHHHHH
Q 043144          421 QLSNKHCSPVLITYNT----VIDGLSK---VGKTEQAMKLLEEMRTKGLKPD----TITYSSLVGG--LSREGKVDEAIK  487 (580)
Q Consensus       421 ~~~~~~~~~~~~~~~~----l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~--~~~~g~~~~A~~  487 (580)
                      .+.+-. +-|...-|.    +-..|.+   ...+..-+.+-+-+.+.|+.|-    ...-|.|.+|  +...|++.++.-
T Consensus       405 ~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~  483 (549)
T PF07079_consen  405 LILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYL  483 (549)
T ss_pred             HHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            776543 223322222    2222322   2223333333333444565542    3344555444  456777777766


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 043144          488 LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTI  541 (580)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  541 (580)
                      .-.-+.+  +.|++.+|..++-+....+++++|++++..+     ||+..++..
T Consensus       484 ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds  530 (549)
T PF07079_consen  484 YSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS  530 (549)
T ss_pred             HHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence            5555544  4567778877777777777888888877664     556555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=0.00078  Score=60.27  Aligned_cols=110  Identities=15%  Similarity=0.068  Sum_probs=71.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHH
Q 043144          463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR---QTYRAIDILADMVTRSCKPTEATY  539 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~  539 (580)
                      +-|...|..|..+|...|+++.|...|.+..+..++ +...+..+..++..+.   ...++..++++++... +.|..+.
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            346667777777777777777777777777665433 5666666666554432   3566677777777653 5556666


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHH
Q 043144          540 TILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAE  574 (580)
Q Consensus       540 ~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~  574 (580)
                      ..|...+...|++.+|...|+.|.+..+..++...
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~  265 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRS  265 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHH
Confidence            66777777777777777777777777655554443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.93  E-value=0.0036  Score=56.40  Aligned_cols=179  Identities=13%  Similarity=0.121  Sum_probs=101.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV--TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK-  443 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  443 (580)
                      ....+...|++++|+..|+++....+.+...  ....++.++.+.+++++|...++++.+..+.....-|.....+.+. 
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~  117 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM  117 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence            3444455666666666666666543322111  1234455566666666666666666655422212222222222211 


Q ss_pred             -C---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH
Q 043144          444 -V---------------GK---TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITY  504 (580)
Q Consensus       444 -~---------------g~---~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  504 (580)
                       .               .+   ..+|+..|+++++.  -|+.             .-.++|...+..+...    =...-
T Consensus       118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~----la~~e  178 (243)
T PRK10866        118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR----LAKYE  178 (243)
T ss_pred             hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH----HHHHH
Confidence             0               11   23455555555544  2332             2345555544444321    01111


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          505 NSIMLGLCKARQTYRAIDILADMVTR--SCKPTEATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       505 ~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..++.-|.+.|.+..|+.-++.+++.  +.+..+.....++.+|...|..++|.++...+..
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence            25667788999999999999999976  2234467788889999999999999998877653

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.93  E-value=0.00014  Score=64.54  Aligned_cols=95  Identities=18%  Similarity=0.281  Sum_probs=52.6

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043144           93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDN  172 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  172 (580)
                      -+.++++|++|+..|.+++.. .|.|.+.|..-..+|.+.|.++.|++-.+..+..+ +.-..+|..|+.+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l-~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIEL-DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc-CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHH
Confidence            344555666666666666555 44455555555555666666666665555555544 3344455566666666666666


Q ss_pred             HHHHHHHc-CCCCCcchH
Q 043144          173 ALQVLERM-SVAPDVVTY  189 (580)
Q Consensus       173 A~~~~~~~-~~~~~~~~~  189 (580)
                      |++.|++. .+.|+-.+|
T Consensus       168 A~~aykKaLeldP~Ne~~  185 (304)
T KOG0553|consen  168 AIEAYKKALELDPDNESY  185 (304)
T ss_pred             HHHHHHhhhccCCCcHHH
Confidence            66665555 444544443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.93  E-value=1.5e-05  Score=58.61  Aligned_cols=81  Identities=19%  Similarity=0.298  Sum_probs=48.7

Q ss_pred             cCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043144           97 NGELEEGFKFLESMVYHGDI-PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ  175 (580)
Q Consensus        97 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  175 (580)
                      +|+++.|+.+|++++..... ++...+..++.+|.+.|++++|..+++. .+.+ +.+......++.++.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            46777777777777665321 1344455567777777777777777766 3222 2233444455677777777777777


Q ss_pred             HHHH
Q 043144          176 VLER  179 (580)
Q Consensus       176 ~~~~  179 (580)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7664

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.88  E-value=0.00014  Score=66.85  Aligned_cols=264  Identities=15%  Similarity=0.039  Sum_probs=161.0

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHH--HhC--CC-CCCHHHHHHHHH
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIV--EDS--GA-VPDVITYNVLIS  162 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~--~~-~~~~~~~~~l~~  162 (580)
                      .+.+++.|+......+|+.+++.|+..   -..+|..+.++|.-.+++++|++....=  ..+  |- .-...+...|+.
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            467899999999999999999987532   1356888999999999999999875421  111  10 112333445666


Q ss_pred             HHHhcCChhHHHHHHHH-c------CC-CCCcchHHHHHHHHHhcCC--------------------hhHHHHHHHHHHh
Q 043144          163 GYCRLGEIDNALQVLER-M------SV-APDVVTYNTILRTLCDSGK--------------------LNLAMEVLHKQLE  214 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~-~------~~-~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~  214 (580)
                      .+--.|.+++|+..-.+ +      +. --...++..+...|...|+                    ++.|.+.|.+-++
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~  183 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE  183 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            66667888888765332 2      11 1234567778888876553                    2233334333221


Q ss_pred             C----C-CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH----cCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          215 K----E-CYPDVITYTILIEATCKESGVGQAMKLLDEMRN----KGCI-PDVVTYNVLVNGICKEGRLDEAIKFLNDMPS  284 (580)
Q Consensus       215 ~----~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  284 (580)
                      .    | --.....|..|...|.-.|+++.|+...+.-+.    .|-. .....+..+..+++-.|+++.|.+.|+....
T Consensus       184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~  263 (639)
T KOG1130|consen  184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN  263 (639)
T ss_pred             HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence            1    1 001223455566666677888888776654322    2211 1234566777888888888888887776432


Q ss_pred             ----CC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          285 ----YG-CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLK-----GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPK  354 (580)
Q Consensus       285 ----~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  354 (580)
                          .| -......+.++...|.-..++++|+.++..-+..     +..-....+-+|..+|...|..++|....+.-++
T Consensus       264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence                22 1233455667777777777888888777654322     1112344566777778778888877766655443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.86  E-value=0.00081  Score=62.55  Aligned_cols=60  Identities=13%  Similarity=0.056  Sum_probs=33.1

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCCh-hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYH----GDIPDI-IPCTSLIRGFCKVGKTRKATRVMEIVE  146 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~  146 (580)
                      .|......|...|++++|...|.++...    +.+.+. ..|.....+| +.+++++|...+++..
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHH
Confidence            5677777888888888888888776432    111111 2233333333 3336666666665543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.86  E-value=0.00078  Score=53.37  Aligned_cols=98  Identities=16%  Similarity=0.101  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK--PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIM  508 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~  508 (580)
                      ++...+..+...|++++|.+.|+.+......  .....+..+..++...|++++|...|+.+....+..  ....+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445566666777777777777777654211  113345556777777777777777777776543221  244566667


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 043144          509 LGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .++...|++++|...++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            7777777777777777777765

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.85  E-value=3.2e-05  Score=45.62  Aligned_cols=33  Identities=55%  Similarity=1.014  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD  465 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~  465 (580)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            456666666666666666666666666665554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.85  E-value=2.5e-05  Score=46.09  Aligned_cols=33  Identities=42%  Similarity=0.991  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN  290 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  290 (580)
                      +||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            344444444444444444444444444444443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.78  E-value=4.5e-05  Score=44.61  Aligned_cols=32  Identities=38%  Similarity=0.820  Sum_probs=17.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP  464 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p  464 (580)
                      +|+.++.+|.+.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.78  E-value=0.00059  Score=57.99  Aligned_cols=80  Identities=11%  Similarity=-0.104  Sum_probs=53.5

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIP--DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      ..+..+...+...|++++|+..|++++.....+  ...++..+...+...|++++|...++...... +....++..++.
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~  114 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence            356666777777788888888888876553222  23467777777788888888888887777654 344455566666


Q ss_pred             HHH
Q 043144          163 GYC  165 (580)
Q Consensus       163 ~~~  165 (580)
                      .+.
T Consensus       115 i~~  117 (168)
T CHL00033        115 ICH  117 (168)
T ss_pred             HHH
Confidence            665

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.78  E-value=0.00045  Score=63.91  Aligned_cols=129  Identities=15%  Similarity=0.081  Sum_probs=85.0

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK-VGKTRKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      ..|..+++...+.+..+.|..+|.++...+ ..+..+|...+..-.. .++.+.|..+|+...+. ++.+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            357777888888888888888888887542 2234455555555334 56666688888888775 36677788888888


Q ss_pred             HHhcCChhHHHHHHHHc-CCCCCc----chHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144          164 YCRLGEIDNALQVLERM-SVAPDV----VTYNTILRTLCDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  215 (580)
                      +...|+.+.|+.+|++. ..-+..    ..|...+..-.+.|+.+...++..++.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888888888888887 222222    35666666666667776666666666553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.77  E-value=0.00024  Score=65.65  Aligned_cols=129  Identities=12%  Similarity=0.070  Sum_probs=87.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144          120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR-LGEIDNALQVLERM--SVAPDVVTYNTILRTL  196 (580)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~  196 (580)
                      .+|..+++...+.+..+.|+.+|.+..+.+ ..+..+|......-.. .++.+.|..+|+..  ..+.+...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            467777888888888888888888887543 3344455554444333 56666688888887  4556677788888888


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144          197 CDSGKLNLAMEVLHKQLEKECYPDV---ITYTILIEATCKESGVGQAMKLLDEMRNK  250 (580)
Q Consensus       197 ~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~~~~  250 (580)
                      ...++.+.|..+|++.+.. ++++.   ..|...+..-.+.|+++.+.++.+.+.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888888888888765 22222   37777777777788888888887777765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.77  E-value=0.00034  Score=62.09  Aligned_cols=101  Identities=15%  Similarity=0.196  Sum_probs=81.9

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY  518 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  518 (580)
                      .-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|.+.|.++.|++-.+..+..++. ...+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            34567899999999999999864 346777788888999999999999999998876544 5778999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          519 RAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       519 ~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      +|++.|++.++-  .|+-.+|..=+
T Consensus       167 ~A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  167 EAIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHHhhhcc--CCCcHHHHHHH
Confidence            999999999864  66666654433

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.75  E-value=0.0071  Score=56.25  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHhC-CCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----CC
Q 043144          433 TYNTVIDGLSKV-GKTEQAMKLLEEMRTK----GLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-----PN  500 (580)
Q Consensus       433 ~~~~l~~~~~~~-g~~~~A~~~~~~m~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~  500 (580)
                      .+..+...|... |++++|++.|++..+.    + .+.  ...+..++..+.+.|++++|.++|+++......     .+
T Consensus       116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~  194 (282)
T PF14938_consen  116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYS  194 (282)
T ss_dssp             HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchh
Confidence            344555667676 8888888888887543    2 111  334566777888889999999999888754322     12


Q ss_pred             HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          501 VI-TYNSIMLGLCKARQTYRAIDILADMVTR--SCKPT--EATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       501 ~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      .. .|...+-++...|++..|.+.+++....  ++..+  ......|+.+| ..|+.+...+.+...-
T Consensus       195 ~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~d  261 (282)
T PF14938_consen  195 AKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEYD  261 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHHc
Confidence            22 3344455677788888888888887644  22223  23444455544 4566666555555443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.75  E-value=0.0022  Score=54.70  Aligned_cols=82  Identities=17%  Similarity=0.165  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL  511 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  511 (580)
                      +..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...++++.+..+. +...+..+..+|
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            33444444445555555555555443321111  234444455555555555555555555443322 333444444444


Q ss_pred             HhcCC
Q 043144          512 CKARQ  516 (580)
Q Consensus       512 ~~~g~  516 (580)
                      ...|+
T Consensus       117 ~~~g~  121 (172)
T PRK02603        117 HKRGE  121 (172)
T ss_pred             HHcCC
Confidence            44444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.74  E-value=0.0013  Score=56.02  Aligned_cols=102  Identities=11%  Similarity=0.083  Sum_probs=82.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      ...+..+...+...|++++|...|+++.+..+.++  ...+..++.++.+.|++++|...+++++... +.+...+..++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            34577788888999999999999999986544432  4678889999999999999999999999763 55677788888


Q ss_pred             HHHHhcCC--------------HHHHHHHHHHHHhCCCC
Q 043144          544 EGIAYEGL--------------AKEALDLLNQLCSRGVV  568 (580)
Q Consensus       544 ~~~~~~g~--------------~~~A~~~~~~~~~~g~~  568 (580)
                      .++...|+              +++|.+++++....++.
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~  152 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPN  152 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCch
Confidence            88888887              57788888887776543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.73  E-value=0.0015  Score=55.57  Aligned_cols=60  Identities=17%  Similarity=0.153  Sum_probs=25.7

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          470 SSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      ..++..+...|++++|...|+++......+  ...++..+..+|...|++++|+..+++++.
T Consensus        39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            333344444444444444444444322111  112344444444444555555554444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.72  E-value=5.6e-05  Score=44.20  Aligned_cols=31  Identities=32%  Similarity=0.624  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ  288 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  288 (580)
                      +|+.++.+|.+.|+++.|.++|++|.+.|+.
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~   33 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK   33 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            3444444444444444444444444444433

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.72  E-value=0.00014  Score=50.27  Aligned_cols=59  Identities=14%  Similarity=0.130  Sum_probs=37.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          507 IMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       507 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      ++..+...|++++|.+.|+++++.. +.+...|..++.++...|++++|..+++++++..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3455666677777777777776553 4456666677777777777777777777666544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.71  E-value=0.013  Score=48.20  Aligned_cols=124  Identities=15%  Similarity=0.127  Sum_probs=62.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CChhhHHHH
Q 043144          152 PDVITYNVLISGYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY-PDVITYTIL  227 (580)
Q Consensus       152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l  227 (580)
                      |++.-...|..+..+.|+..+|...|++.   ....|....-.+.++....+++..|...++.+.+.+.. .+......+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            44444445555555666666666666554   22334444555555555566666666665555554310 112233444


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144          228 IEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK  277 (580)
Q Consensus       228 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  277 (580)
                      .+.+...|.+.+|+..|+.....  -|+...-......+.++|+.+++..
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a  214 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA  214 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence            55555666666666666666554  2333333333344455555554443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.69  E-value=0.0014  Score=51.18  Aligned_cols=94  Identities=15%  Similarity=0.044  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPD--IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAV--PDVITYNVLIS  162 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~  162 (580)
                      .-.+...+-..|+.++|+.+|++++..|...+  ...+..+...+...|++++|..+++......+.  .+......+..
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al   83 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL   83 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence            34566788888999999999999988876554  356777888889999999999999888765311  12233333445


Q ss_pred             HHHhcCChhHHHHHHHHc
Q 043144          163 GYCRLGEIDNALQVLERM  180 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~  180 (580)
                      ++...|+.++|++.+-..
T Consensus        84 ~L~~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   84 ALYNLGRPKEALEWLLEA  101 (120)
T ss_pred             HHHHCCCHHHHHHHHHHH
Confidence            667788888888887654

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.68  E-value=0.00098  Score=64.12  Aligned_cols=124  Identities=17%  Similarity=0.116  Sum_probs=97.6

Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144          356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG--CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLIT  433 (580)
Q Consensus       356 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  433 (580)
                      +.+.+......+++.+....+.+.+..++.+.....  ...-..|..+++..|.+.|..+.++.++..=...|+.||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            344467777788888888888888888888877642  222234567889999999999999999998888899999999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      +|.+++.+.+.|++..|.++...|...+...+..|+...+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999988888776666777776666666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.66  E-value=0.00023  Score=49.89  Aligned_cols=65  Identities=12%  Similarity=0.046  Sum_probs=40.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhC
Q 043144          500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG-LAKEALDLLNQLCSR  565 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  565 (580)
                      +...|..++..+...|++++|+..|++.++.. +.+...|..++.++...| ++++|.+.+++.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            34556666666666666666666666666653 445556666666666666 566666666666553

...

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.65  E-value=0.00082  Score=64.65  Aligned_cols=125  Identities=17%  Similarity=0.172  Sum_probs=104.5

Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043144          320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH--GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV  397 (580)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  397 (580)
                      .+.+.+......+++.+....+++.+..++-+....  ....-+.+..+++..|.+.|..+.++.++..=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            344667777888888888888899999998887765  222334566799999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV  444 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  444 (580)
                      +++.|++.+.+.|++..|.++...|...+...+..++...+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999988777667777777766666555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.60  E-value=0.019  Score=51.79  Aligned_cols=53  Identities=11%  Similarity=0.043  Sum_probs=23.0

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144          438 IDGLSKVGKTEQAMKLLEEMRTK--GLKPDTITYSSLVGGLSREGKVDEAIKLFH  490 (580)
Q Consensus       438 ~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  490 (580)
                      ...|.+.|.+..|..-++.+++.  +.+.....+..+..+|...|..++|.....
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~  236 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK  236 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            33344455555555555554443  111223333444444444554444444433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.59  E-value=0.0064  Score=61.21  Aligned_cols=61  Identities=18%  Similarity=0.083  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      ..|..+.......|++++|...++++...+  |+...|..++.++...|+.++|.+.++++..
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            344444444444455555555555555443  3444555555555555555555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.59  E-value=0.00031  Score=48.52  Aligned_cols=59  Identities=17%  Similarity=0.134  Sum_probs=39.5

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSG  149 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  149 (580)
                      +...+...|++++|+..|++++... |.+...+..+..++...|++++|..+|+++.+..
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~   61 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD   61 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4456667777777777777777663 4456667777777777777777777777776553

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.58  E-value=0.00022  Score=49.88  Aligned_cols=54  Identities=17%  Similarity=0.292  Sum_probs=34.4

Q ss_pred             HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144           95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSG  149 (580)
Q Consensus        95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  149 (580)
                      ...|++++|+++|++++.. .|.+..++..++.+|.+.|++++|..+++.+....
T Consensus         2 l~~~~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQR-NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHH-TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            4566677777777776665 34455666666667777777777777776666653

...

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.57  E-value=0.032  Score=46.08  Aligned_cols=167  Identities=17%  Similarity=0.125  Sum_probs=115.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK  446 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  446 (580)
                      +..+..+.=|++...+-..+-..  ..|++..-..|..+....|+..+|...|++...--...|......+..+....++
T Consensus        62 ~~~a~~q~ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~  139 (251)
T COG4700          62 LLMALQQKLDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQE  139 (251)
T ss_pred             HHHHHHHhcChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhcc
Confidence            33344444455544433332222  3577777788888899999999999999988876566778888888888888999


Q ss_pred             HHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144          447 TEQAMKLLEEMRTKG---LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDI  523 (580)
Q Consensus       447 ~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  523 (580)
                      +..|...++++.+.+   -.||  +...+...+...|.+++|+..|+.+...-+.|....|  ....+.++|+.++|...
T Consensus       140 ~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq  215 (251)
T COG4700         140 FAAAQQTLEDLMEYNPAFRSPD--GHLLFARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQ  215 (251)
T ss_pred             HHHHHHHHHHHhhcCCccCCCC--chHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHH
Confidence            999999999887653   2233  4455778888999999999999998876544444443  44456788888888777


Q ss_pred             HHHHHHcCCCCCHHHHH
Q 043144          524 LADMVTRSCKPTEATYT  540 (580)
Q Consensus       524 ~~~~~~~~~~~~~~~~~  540 (580)
                      +....+. ...+...|.
T Consensus       216 ~~~v~d~-~~r~~~H~r  231 (251)
T COG4700         216 YVAVVDT-AKRSRPHYR  231 (251)
T ss_pred             HHHHHHH-HHhcchhHH
Confidence            7666544 233444454

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=0.0042  Score=55.73  Aligned_cols=111  Identities=14%  Similarity=0.141  Sum_probs=73.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHH
Q 043144          151 VPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDS---GKLNLAMEVLHKQLEKECYPDVITYT  225 (580)
Q Consensus       151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~  225 (580)
                      |.|...|-.|+..|...|+++.|..-|.+. . .+++...+..+..++...   ....++..+|++++..+ +.|+.+..
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~  231 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS  231 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence            667778888888888888888888877776 2 234555566666655432   23456777777777764 33566666


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 043144          226 ILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN  264 (580)
Q Consensus       226 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  264 (580)
                      .|...+...|++.+|...|+.|.+..  |....+..++.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            67777778888888888888887763  33334444444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.55  E-value=0.0027  Score=57.60  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHH
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKP---TEATYTILI  543 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~  543 (580)
                      |........+.|++++|...|+.+.+..+...  ...+..++.+|...|++++|...|+.+++. ++.   .+..+..++
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~-yP~s~~~~dAl~klg  224 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN-YPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCcchhHHHHHHH
Confidence            44444334556777777777777765443311  245566777777777777777777777754 122   245566666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          544 EGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      .++...|++++|.++++++++..+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~  249 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPG  249 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            6777777777777777777766543

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.54  E-value=0.0015  Score=60.37  Aligned_cols=280  Identities=16%  Similarity=0.123  Sum_probs=137.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHH-------cCCC-CCcchHHHHHH
Q 043144          127 RGFCKVGKTRKATRVMEIVEDSGAVPDV----ITYNVLISGYCRLGEIDNALQVLER-------MSVA-PDVVTYNTILR  194 (580)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~-------~~~~-~~~~~~~~l~~  194 (580)
                      .-+++.|+.......|+..++.| ..|.    .+|..|+.+|.-.+++++|+++...       ++.. -...+...|+.
T Consensus        25 ERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN  103 (639)
T KOG1130|consen   25 ERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN  103 (639)
T ss_pred             HHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence            34789999999999999999988 3343    3566788888888999999987432       1211 12334445666


Q ss_pred             HHHhcCChhHHHHHHHHHHhC----CC-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 043144          195 TLCDSGKLNLAMEVLHKQLEK----EC-YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE  269 (580)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  269 (580)
                      .+--.|.+++|+....+-+..    |- ......+..+...|...|+--....    -.+.|-.++.+ -          
T Consensus       104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~----pee~g~f~~ev-~----------  168 (639)
T KOG1130|consen  104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEA----PEEKGAFNAEV-T----------  168 (639)
T ss_pred             hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCC----hhhcccccHHH-H----------
Confidence            666677777776554432221    10 0122334444444443332100000    00000000000 0          


Q ss_pred             CCHHHHHHHHHH----hhhCCC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCC-CChhhHHHHHHHHHhc
Q 043144          270 GRLDEAIKFLND----MPSYGC-QPNVITHNIILRSMCSTGRWMDAERLLAEMVLK----GCS-PSVVTFNILINFLCRK  339 (580)
Q Consensus       270 g~~~~A~~~~~~----~~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~  339 (580)
                      ..++.|.++|.+    +.+.|- -.--..|..+...|.-.|+++.|+...+.-++.    |-. .....+..+.+++.-.
T Consensus       169 ~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hifl  248 (639)
T KOG1130|consen  169 SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFL  248 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhh
Confidence            001122222211    111110 001123444555555566666666655443221    211 1123455566666666


Q ss_pred             CCHHHHHHHHHHhhhC----C-CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHhc
Q 043144          340 GLLGRAIDILEKMPKH----G-CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVS----RG-CYPDIVTYNTLLTALCKD  409 (580)
Q Consensus       340 g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~~~~~li~~~~~~  409 (580)
                      |+++.|.+.|+.....    | -.....+..+|.+.|.-..++++|+.++.+-+.    .+ ..-....+-+|..+|...
T Consensus       249 g~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~al  328 (639)
T KOG1130|consen  249 GNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNAL  328 (639)
T ss_pred             cccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence            7777766666543321    1 112334455566666666666666666654321    10 111234556666666666


Q ss_pred             CChHHHHHHHHHH
Q 043144          410 GKVDVAVEILNQL  422 (580)
Q Consensus       410 g~~~~A~~~~~~~  422 (580)
                      |..++|+.+.+..
T Consensus       329 g~h~kAl~fae~h  341 (639)
T KOG1130|consen  329 GEHRKALYFAELH  341 (639)
T ss_pred             hhHHHHHHHHHHH
Confidence            6666666655543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.54  E-value=0.004  Score=48.60  Aligned_cols=92  Identities=20%  Similarity=0.219  Sum_probs=56.1

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHH
Q 043144          437 VIDGLSKVGKTEQAMKLLEEMRTKGLKPD--TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLC  512 (580)
Q Consensus       437 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~  512 (580)
                      +..++-..|+.++|+.+|++....|+...  ...+..+...+...|++++|..++++.....+.+  +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44556667777777777777777665433  2345556667777777777777777776532221  1122223334566


Q ss_pred             hcCCHHHHHHHHHHHH
Q 043144          513 KARQTYRAIDILADMV  528 (580)
Q Consensus       513 ~~g~~~~A~~~~~~~~  528 (580)
                      ..|+.++|++.+-..+
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            6777777777766555

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.54  E-value=0.11  Score=51.31  Aligned_cols=406  Identities=11%  Similarity=0.044  Sum_probs=208.3

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..|..++..-......+.+...+..++.. .|---.-|...+.--.+.|..+.+..+|++.+. +++.++..|..+...+
T Consensus        46 ~~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~  123 (577)
T KOG1258|consen   46 DAWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFL  123 (577)
T ss_pred             cchHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH
Confidence            35666665555555556677777777765 333345677777777899999999999999886 4578888888877766


Q ss_pred             Hh-cCChhHHHHHHHHc----CCC-CCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH---hc-
Q 043144          165 CR-LGEIDNALQVLERM----SVA-PDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC---KE-  234 (580)
Q Consensus       165 ~~-~g~~~~A~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~---~~-  234 (580)
                      .. .|+.+.....|+++    |.. .....|...|..-..++++.....+|++.++..    ...++..-.-|.   .. 
T Consensus       124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~  199 (577)
T KOG1258|consen  124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQN  199 (577)
T ss_pred             hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcC
Confidence            55 68888888899987    322 345678899998889999999999999988752    112222221111   11 


Q ss_pred             -----CCHhHHHHHHHHHHHc---C-CCCCHhHHHHHHHHHH-hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc
Q 043144          235 -----SGVGQAMKLLDEMRNK---G-CIPDVVTYNVLVNGIC-KEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST  304 (580)
Q Consensus       235 -----g~~~~A~~~~~~~~~~---~-~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  304 (580)
                           ...+++.++-......   . ..+....+..-+.--. ..+..+++.....+..           ...-..+-..
T Consensus       200 ~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s  268 (577)
T KOG1258|consen  200 EEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKS  268 (577)
T ss_pred             ChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhh
Confidence                 1222222222211110   0 0000001110000000 0011111111111100           0000111112


Q ss_pred             CChHHHHHHHHHHHHcC---C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH
Q 043144          305 GRWMDAERLLAEMVLKG---C----SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM  377 (580)
Q Consensus       305 ~~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  377 (580)
                      -.+.+....|+.-.+..   +    .++..+|..-+..-...|+.+.+.-+|++..-. +..-...|-..+......|+.
T Consensus       269 ~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~  347 (577)
T KOG1258|consen  269 EEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDV  347 (577)
T ss_pred             HhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCch
Confidence            22222333333333221   1    123456666677777777777777777766532 111223344444444445777


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHH--
Q 043144          378 DRAIEYLEIMVSRGCY--PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMK--  452 (580)
Q Consensus       378 ~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~--  452 (580)
                      +-|..++....+-..+  |....+.+.  ..-..|+++.|..+++.+.+.-  |+. ..-..-+....+.|+.+.+..  
T Consensus       348 ~~~~~~~~~~~~i~~k~~~~i~L~~a~--f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~  423 (577)
T KOG1258|consen  348 SLANNVLARACKIHVKKTPIIHLLEAR--FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN  423 (577)
T ss_pred             hHHHHHHHhhhhhcCCCCcHHHHHHHH--HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence            7776666555443222  222222222  2334567788888887777654  332 222222334456666666662  


Q ss_pred             -HHHHHHHCCCCCCHHHHHHHHH-----HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144          453 -LLEEMRTKGLKPDTITYSSLVG-----GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR  515 (580)
Q Consensus       453 -~~~~m~~~~~~p~~~~~~~l~~-----~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  515 (580)
                       ++..... | .-+..+...+.-     .+.-.++.+.|..++.++.+.- .++...|..++......+
T Consensus       424 ~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~-~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  424 ELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL-PDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC-CccHHHHHHHHHHHHhCC
Confidence             2222221 1 112222222222     2234567777777777777643 335666666666555444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.52  E-value=0.0057  Score=61.58  Aligned_cols=64  Identities=13%  Similarity=0.027  Sum_probs=42.6

Q ss_pred             ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY  285 (580)
Q Consensus       220 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  285 (580)
                      +...+..+.-.....|++++|...++++.+.+  |+...|..+...+...|+.++|.+.|++....
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34555555555556677777777777777663  46666777777777777777777777776654

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.50  E-value=0.015  Score=51.00  Aligned_cols=172  Identities=19%  Similarity=0.106  Sum_probs=88.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYP--DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS  442 (580)
Q Consensus       365 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  442 (580)
                      -.....+...|++++|+..|+.+....+..  -......++.++.+.|+++.|...++++.+..+.....-+.....+.+
T Consensus         9 Y~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~   88 (203)
T PF13525_consen    9 YQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLS   88 (203)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHH
Confidence            334445555666666666666666542221  112445556666666666666666666655442111111211111111


Q ss_pred             h-------------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          443 K-------------VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIML  509 (580)
Q Consensus       443 ~-------------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  509 (580)
                      .             .+...+|...|+.               ++.-|-......+|...+..+.+.    =...-..++.
T Consensus        89 ~~~~~~~~~~~~~D~~~~~~A~~~~~~---------------li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~  149 (203)
T PF13525_consen   89 YYKQIPGILRSDRDQTSTRKAIEEFEE---------------LIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIAR  149 (203)
T ss_dssp             HHHHHHHHH-TT---HHHHHHHHHHHH---------------HHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred             HHHhCccchhcccChHHHHHHHHHHHH---------------HHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            1             1112233333333               444444455556666665555421    0111223567


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 043144          510 GLCKARQTYRAIDILADMVTRSCKPT---EATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       510 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~  556 (580)
                      .|.+.|.+..|..-++.+++. .+.+   ...+..++.+|.+.|..+.|.
T Consensus       150 ~Y~~~~~y~aA~~r~~~v~~~-yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  150 FYYKRGKYKAAIIRFQYVIEN-YPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHCTT-HHHHHHHHHHHHHH-STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH-CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            788899999999999998876 3333   356777888888888887544

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.50  E-value=0.00033  Score=48.92  Aligned_cols=60  Identities=25%  Similarity=0.340  Sum_probs=43.7

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHH
Q 043144          130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYN  190 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~  190 (580)
                      .+.|++++|.+.|+.+.... |.+...+..++.+|.+.|++++|.++++++ ...|+...|.
T Consensus         2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            56788888888888887776 557777778888888888888888888887 4445533333

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.46  E-value=0.11  Score=49.45  Aligned_cols=424  Identities=13%  Similarity=0.132  Sum_probs=232.1

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHH--HHhc
Q 043144          129 FCKVGKTRKATRVMEIVEDSGAVPDV------ITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRT--LCDS  199 (580)
Q Consensus       129 ~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~--~~~~  199 (580)
                      +.+++++.+|..+|.++.+.. ..++      ...+.++++|... +.+.-...+... ...| ...|..+..+  +.+.
T Consensus        16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~-~s~~l~LF~~L~~Y~~   92 (549)
T PF07079_consen   16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFG-KSAYLPLFKALVAYKQ   92 (549)
T ss_pred             HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHh
Confidence            568899999999999998753 2232      2334567777543 333333333333 2223 3334444443  4578


Q ss_pred             CChhHHHHHHHHHHhC--CCCC------------ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc----CCCCCHhHHHH
Q 043144          200 GKLNLAMEVLHKQLEK--ECYP------------DVITYTILIEATCKESGVGQAMKLLDEMRNK----GCIPDVVTYNV  261 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~  261 (580)
                      +.+++|.+.+..-...  +..|            |...-+..+..+...|.+.+++.+++++...    ...-+..+|+.
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            9999999888766544  2111            1222234567788899999999999888754    33467888887


Q ss_pred             HHHHHHhc--------CC-------HHHHHHHHHHhhhC------CCCCCHHHHHHHHHHHHhc--CChHHHHHHHHHHH
Q 043144          262 LVNGICKE--------GR-------LDEAIKFLNDMPSY------GCQPNVITHNIILRSMCST--GRWMDAERLLAEMV  318 (580)
Q Consensus       262 l~~~~~~~--------g~-------~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~  318 (580)
                      ++-.+.+.        ..       ++.+.-+..+|...      .+-|.......++....-.  .+..--.++++...
T Consensus       173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We  252 (549)
T PF07079_consen  173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE  252 (549)
T ss_pred             HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence            55444332        11       12222222222211      1122222222222221111  11112223333332


Q ss_pred             HcCCCCChh-hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 043144          319 LKGCSPSVV-TFNILINFLCRKGLLGRAIDILEKMPKHGCTP----NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY  393 (580)
Q Consensus       319 ~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  393 (580)
                      ..-+.|+.. +...+..-+..  +.+++..+.+.+....+.+    -..++..++....+.++...|.+.+.-+...  .
T Consensus       253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--d  328 (549)
T PF07079_consen  253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--D  328 (549)
T ss_pred             hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--C
Confidence            222333322 23334444433  5666666666554432111    2346777888888899999999988877654  3


Q ss_pred             CCHHHHHH-------HHHHHH----hcCChHHHHHHHHHHHhCCCCCC-HHHH-HHHHHHHHhCCC-HHHHHHHHHHHHH
Q 043144          394 PDIVTYNT-------LLTALC----KDGKVDVAVEILNQLSNKHCSPV-LITY-NTVIDGLSKVGK-TEQAMKLLEEMRT  459 (580)
Q Consensus       394 ~~~~~~~~-------li~~~~----~~g~~~~A~~~~~~~~~~~~~~~-~~~~-~~l~~~~~~~g~-~~~A~~~~~~m~~  459 (580)
                      |+...-..       +-+..+    ...+...-+.+++.+...++... .+.| -.-+.-+-+.|. -++|+.+++...+
T Consensus       329 p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~  408 (549)
T PF07079_consen  329 PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ  408 (549)
T ss_pred             CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            33332111       122222    11223444556666665553221 1111 112233455665 8899999999886


Q ss_pred             CCCCCCHHHHHHHH----HHHHh---CCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHH--HHhcCCHHHHHHHHHH
Q 043144          460 KGLKPDTITYSSLV----GGLSR---EGKVDEAIKLFHDLERLGVRPN----VITYNSIMLG--LCKARQTYRAIDILAD  526 (580)
Q Consensus       460 ~~~~p~~~~~~~l~----~~~~~---~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~--~~~~g~~~~A~~~~~~  526 (580)
                      -. +-|...-|.+.    .+|.+   ...+.+-..+-+-+.+.|+.|-    ...-|.|.+|  +...|++.++.-.-.-
T Consensus       409 ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~W  487 (549)
T PF07079_consen  409 FT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSW  487 (549)
T ss_pred             hc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            42 23443333322    23322   2234444444444556676653    3344555554  5578999999876665


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          527 MVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       527 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      +.+  +.|++.+|..++-+.....++++|..++..+
T Consensus       488 L~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  488 LTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            554  5899999999999999999999999999876

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.46  E-value=0.00017  Score=41.08  Aligned_cols=28  Identities=39%  Similarity=0.848  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSY  285 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  285 (580)
                      +|+.++++|++.|++++|.++|++|.+.
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            3444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.41  E-value=0.00082  Score=47.05  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=47.5

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 043144          465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR-QTYRAIDILADMVTR  530 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~  530 (580)
                      +..+|..+...+...|++++|+..|++..+..+. +...|..+..+|...| ++++|++.+++.++.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            4556777777777788888888888887776544 5667777777777777 678888877777653

...

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.41  E-value=0.00023  Score=40.47  Aligned_cols=29  Identities=45%  Similarity=0.911  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKG  461 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  461 (580)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            35555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0086  Score=52.20  Aligned_cols=133  Identities=10%  Similarity=0.034  Sum_probs=85.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH----
Q 043144          293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVL----  368 (580)
Q Consensus       293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----  368 (580)
                      ..+.++..+...|.+.-....+.+.++...+.++.....|++.-.+.||.+.|...|++..+..-..|....+.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4456666677778888888888888877666677788888888888888888888888766543333333333332    


Q ss_pred             -HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144          369 -HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH  426 (580)
Q Consensus       369 -~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  426 (580)
                       ..|.-.+++..|...+.++...+.. |+...|.-.-+..-.|+..+|.+.++.+.+..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence             3444556677777777766665433 44443333333444567777777777777655

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.37  E-value=0.0027  Score=47.59  Aligned_cols=76  Identities=25%  Similarity=0.380  Sum_probs=45.6

Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcC--------CHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144          227 LIEATCKESGVGQAMKLLDEMRNKGC-IPDVVTYNVLVNGICKEG--------RLDEAIKFLNDMPSYGCQPNVITHNII  297 (580)
Q Consensus       227 li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~~~~~~~~~~~~~l  297 (580)
                      .|.-+...+++...-.+|+.+++.|+ .|++.+|+.++...++..        +.-+.+.+|+.|...+++|+..+|+.+
T Consensus        31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv  110 (120)
T PF08579_consen   31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV  110 (120)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence            44445555667777777777776666 666777776666554432        233455566666666666666666666


Q ss_pred             HHHHH
Q 043144          298 LRSMC  302 (580)
Q Consensus       298 l~~~~  302 (580)
                      +..+.
T Consensus       111 l~~Ll  115 (120)
T PF08579_consen  111 LGSLL  115 (120)
T ss_pred             HHHHH
Confidence            65543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK15331 chaperone protein SicA; Provisional

Probab=97.35  E-value=0.0028  Score=51.58  Aligned_cols=85  Identities=9%  Similarity=-0.067  Sum_probs=41.1

Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144          443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAID  522 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  522 (580)
                      ..|++++|..+|.-+...+ .-+..-|..|..++-..+++++|...|......+.. |+..+-....+|...|+.+.|+.
T Consensus        49 ~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         49 NQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHHH
Confidence            4555555555555544432 123333444444555555555555555554433322 22223344445555555555555


Q ss_pred             HHHHHHH
Q 043144          523 ILADMVT  529 (580)
Q Consensus       523 ~~~~~~~  529 (580)
                      .|+...+
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            5555553

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.34  E-value=0.13  Score=47.84  Aligned_cols=293  Identities=17%  Similarity=0.137  Sum_probs=173.0

Q ss_pred             HHHHHHHHHH--hcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH--HHhcCChHHHHHHHHHHHHcCCCCChhh--HHH
Q 043144          258 TYNVLVNGIC--KEGRLDEAIKFLNDMPSYGCQPNVITHNIILRS--MCSTGRWMDAERLLAEMVLKGCSPSVVT--FNI  331 (580)
Q Consensus       258 ~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~  331 (580)
                      .|..|-.+++  ..|+-..|.++-.+..+. +..|......++.+  -.-.|+++.|.+-|+.|...   |....  ...
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg  159 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG  159 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence            3444444443  356666676665554321 13344444444433  33468888888888888753   22211  122


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHH-
Q 043144          332 LINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG-CYPDIV--TYNTLLTALC-  407 (580)
Q Consensus       332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~--~~~~li~~~~-  407 (580)
                      |.-.--+.|+.+.|.++-+..-..-.. -...+...+...+..|+|+.|+++.+.-.... +.++..  .-..|+.+-. 
T Consensus       160 LyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~  238 (531)
T COG3898         160 LYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAM  238 (531)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHH
Confidence            222233577888888777766554322 45667778888888888888888887655432 233432  2222322211 


Q ss_pred             --hcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH
Q 043144          408 --KDGKVDVAVEILNQLSNKHCSPVLI-TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE  484 (580)
Q Consensus       408 --~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~  484 (580)
                        -..+...|...-.+..+..  |+.. .-..-..++.+.|+..++-.+++.+=+..  |.+.++.  +....+.|+  .
T Consensus       239 s~ldadp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP~ia~--lY~~ar~gd--t  310 (531)
T COG3898         239 SLLDADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHPDIAL--LYVRARSGD--T  310 (531)
T ss_pred             HHhcCChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CChHHHH--HHHHhcCCC--c
Confidence              1224555666555555443  4422 22334567788899999999998887664  4444332  223345554  3


Q ss_pred             HHHHHHHHH---hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHH
Q 043144          485 AIKLFHDLE---RLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY-EGLAKEALDLLN  560 (580)
Q Consensus       485 A~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~  560 (580)
                      ++.-+++..   ...+. +......+..+-...|++..|..--+.....  .|....|..|.++-.. .||-.+++.++-
T Consensus       311 a~dRlkRa~~L~slk~n-naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         311 ALDRLKRAKKLESLKPN-NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             HHHHHHHHHHHHhcCcc-chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHH
Confidence            333333332   22222 4566667777888889998888877776643  7888888888888754 499999999888


Q ss_pred             HHHhCC
Q 043144          561 QLCSRG  566 (580)
Q Consensus       561 ~~~~~g  566 (580)
                      +..+.-
T Consensus       388 qav~AP  393 (531)
T COG3898         388 QAVKAP  393 (531)
T ss_pred             HHhcCC
Confidence            877653

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.34  E-value=0.15  Score=48.37  Aligned_cols=131  Identities=18%  Similarity=0.206  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHH
Q 043144          432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKG-LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITY-NSIML  509 (580)
Q Consensus       432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~  509 (580)
                      .+|...+....+..-.+.|..+|-+..+.+ +.++..++++++..++ .|+...|..+|+.-...  .||...| +..+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            345556666666677788888888888776 4567777777776554 45677788888765543  2343333 44555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          510 GLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       510 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      -+...++-+.|..+|+..+.+ +..+  ...|..+++--..-|+...+..+=+++.+.-
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~  532 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV  532 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence            667778888888888876654 2333  5678888877778888888887777776653

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.016  Score=50.51  Aligned_cols=130  Identities=13%  Similarity=0.042  Sum_probs=67.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCCh
Q 043144          123 TSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKL  202 (580)
Q Consensus       123 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  202 (580)
                      +.++..+.-.|.+.-...++..+++..++.++.....|++.-++.||.+.|...|++.                      
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v----------------------  238 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV----------------------  238 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH----------------------
Confidence            4455555555566666666666666555556666666666666666666666666543                      


Q ss_pred             hHHHHHHHHHHhCCCCCChh-----hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH
Q 043144          203 NLAMEVLHKQLEKECYPDVI-----TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK  277 (580)
Q Consensus       203 ~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  277 (580)
                                .+..-..+..     ........|.-.+++..|...+++++..+ +.++...|.-.-+..-.|+..+|++
T Consensus       239 ----------ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK  307 (366)
T KOG2796|consen  239 ----------EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALK  307 (366)
T ss_pred             ----------HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHH
Confidence                      2211111111     11222233444556666666666665543 2244444444444444566666666


Q ss_pred             HHHHhhhC
Q 043144          278 FLNDMPSY  285 (580)
Q Consensus       278 ~~~~~~~~  285 (580)
                      .++.|.+.
T Consensus       308 ~~e~~~~~  315 (366)
T KOG2796|consen  308 QLEAMVQQ  315 (366)
T ss_pred             HHHHHhcc
Confidence            66666654

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.33  E-value=0.0043  Score=46.56  Aligned_cols=70  Identities=20%  Similarity=0.407  Sum_probs=37.3

Q ss_pred             cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144          409 DGKVDVAVEILNQLSNKHC-SPVLITYNTVIDGLSKVG--------KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR  478 (580)
Q Consensus       409 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  478 (580)
                      .+++.....+|+.+++.++ .|+..+|+.++.+..+..        +.-..+.+|++|+..+++|+..+|+.++..+.+
T Consensus        38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            3444444444444444444 444444444444433221        233456667777776777777777777666543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.33  E-value=0.14  Score=47.69  Aligned_cols=306  Identities=16%  Similarity=0.122  Sum_probs=167.3

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHH--HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcCChhHHHH
Q 043144          100 LEEGFKFLESMVYHGDIPDIIPCTSLIRGF--CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY--CRLGEIDNALQ  175 (580)
Q Consensus       100 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~  175 (580)
                      +..+.++|..-.+.      ..|..|-.++  .-.||-..|.++-.+..+. +..|......|+.+-  .-.|+++.|.+
T Consensus        69 P~t~~Ryfr~rKRd------rgyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~  141 (531)
T COG3898          69 PYTARRYFRERKRD------RGYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARK  141 (531)
T ss_pred             cHHHHHHHHHHHhh------hHHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHH
Confidence            44566666654332      1233333333  3556777777766654421 123333333333332  33678888888


Q ss_pred             HHHHcCCCCCcch--HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC-C
Q 043144          176 VLERMSVAPDVVT--YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG-C  252 (580)
Q Consensus       176 ~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~  252 (580)
                      -|+.|-..|....  ...|.-.--+.|..+.|..+-+..-..- +.-...+...+...+..|+++.|+++.+.-++.. +
T Consensus       142 kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vi  220 (531)
T COG3898         142 KFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVI  220 (531)
T ss_pred             HHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhh
Confidence            8887722222211  2222223335677777777766665542 2234566777777778888888888877665432 2


Q ss_pred             CCCHhH--HHHHHHHH---HhcCCHHHHHHHHHHhhhCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043144          253 IPDVVT--YNVLVNGI---CKEGRLDEAIKFLNDMPSYGCQPNVI-THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV  326 (580)
Q Consensus       253 ~~~~~~--~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (580)
                      .+++.-  -..|+.+-   .-.-+...|.+.-.+..+.  .||.. .-..-..++.+.|+..++-.+++.+-+..  |.+
T Consensus       221 e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e--PHP  296 (531)
T COG3898         221 EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAE--PHP  296 (531)
T ss_pred             chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC--CCh
Confidence            333221  11222211   1123455555555444433  34432 22334456778888888888888888763  444


Q ss_pred             hhHHHHHHHHHhcCCHHHHH----HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          327 VTFNILINFLCRKGLLGRAI----DILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL  402 (580)
Q Consensus       327 ~~~~~l~~~~~~~g~~~~a~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  402 (580)
                      ..+  ++..+.+.|+.....    +-++.|...    +..+......+-...|++..|..--+.....  .|....|..|
T Consensus       297 ~ia--~lY~~ar~gdta~dRlkRa~~L~slk~n----naes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLl  368 (531)
T COG3898         297 DIA--LLYVRARSGDTALDRLKRAKKLESLKPN----NAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLL  368 (531)
T ss_pred             HHH--HHHHHhcCCCcHHHHHHHHHHHHhcCcc----chHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHH
Confidence            333  233344555532221    112222222    5566666677777788888877777766654  5666677777


Q ss_pred             HHHHH-hcCChHHHHHHHHHHHhC
Q 043144          403 LTALC-KDGKVDVAVEILNQLSNK  425 (580)
Q Consensus       403 i~~~~-~~g~~~~A~~~~~~~~~~  425 (580)
                      .+.-. ..|+-.++...+.+..+.
T Consensus       369 AdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         369 ADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHhhccCchHHHHHHHHHHhcC
Confidence            66644 448888888888877654

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.29  E-value=0.0013  Score=46.60  Aligned_cols=58  Identities=12%  Similarity=0.039  Sum_probs=34.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ..|.+.+++++|++++++++..+ |.+...|...+.++...|++++|.+.+++..+.++
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            34555666666666666666542 44555555566666666666666666666665554

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.23  E-value=0.094  Score=51.96  Aligned_cols=93  Identities=13%  Similarity=0.258  Sum_probs=44.8

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCC-------CCCChhhHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHG-------DIPDIIPCTSLIRGFCKVGKTR--KATRVMEIVEDSGAVPDVIT  156 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~  156 (580)
                      ++..-+-.+...|.+.+|.++----+...       ...+..-++..-.+|.+-.+..  +-..-++++.++|-.|+...
T Consensus       558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL  637 (1081)
T KOG1538|consen  558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL  637 (1081)
T ss_pred             cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence            33444556777788877765532211100       0001112222333444333322  22233445555564455533


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHcC
Q 043144          157 YNVLISGYCRLGEIDNALQVLERMS  181 (580)
Q Consensus       157 ~~~l~~~~~~~g~~~~A~~~~~~~~  181 (580)
                         +...++-.|.+.+|-++|.+-+
T Consensus       638 ---lA~~~Ay~gKF~EAAklFk~~G  659 (1081)
T KOG1538|consen  638 ---LADVFAYQGKFHEAAKLFKRSG  659 (1081)
T ss_pred             ---HHHHHHhhhhHHHHHHHHHHcC
Confidence               4455566777777777777764

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.20  E-value=0.049  Score=47.76  Aligned_cols=54  Identities=17%  Similarity=0.175  Sum_probs=21.5

Q ss_pred             HHhcCChHHHHHHHHHHHHcCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          301 MCSTGRWMDAERLLAEMVLKGC--SPSVVTFNILINFLCRKGLLGRAIDILEKMPK  354 (580)
Q Consensus       301 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  354 (580)
                      +...|++.+|...|+.+.....  +--......++.++.+.|+++.|...+++.++
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~   70 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIK   70 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444444555544444443310  01112233344444445555555555544444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.17  E-value=0.022  Score=46.56  Aligned_cols=93  Identities=10%  Similarity=-0.097  Sum_probs=76.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 043144          122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDS  199 (580)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~  199 (580)
                      ......-+...|++++|..+|.-+.-.+ +.+..-|..|+.++-..+++++|+..|...  -...|+......+.++...
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l  118 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLM  118 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHh
Confidence            4445555778999999999999988777 567777888999999999999999999876  2245666677788999999


Q ss_pred             CChhHHHHHHHHHHhC
Q 043144          200 GKLNLAMEVLHKQLEK  215 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~  215 (580)
                      |+.+.|+..|+.....
T Consensus       119 ~~~~~A~~~f~~a~~~  134 (165)
T PRK15331        119 RKAAKARQCFELVNER  134 (165)
T ss_pred             CCHHHHHHHHHHHHhC
Confidence            9999999999888874

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.13  E-value=0.0086  Score=54.40  Aligned_cols=51  Identities=10%  Similarity=-0.067  Sum_probs=22.0

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          130 CKVGKTRKATRVMEIVEDSGAVPD--VITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      .+.|++++|...|+.+.+..+...  +..+..++.+|...|++++|+..|+++
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v  206 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV  206 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            334445555555544444321100  123344444444445555554444444

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.07  E-value=0.018  Score=49.23  Aligned_cols=50  Identities=20%  Similarity=0.290  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHHHHH-----hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144          429 PVLITYNTVIDGLS-----KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR  478 (580)
Q Consensus       429 ~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  478 (580)
                      .+..+|..+++.|.     +.|..+=....+..|.+.|+.-|..+|+.|++.+=+
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK   99 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK   99 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence            56777777887776     346667677777777778888888888888877654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.29  Score=50.29  Aligned_cols=178  Identities=14%  Similarity=0.114  Sum_probs=107.5

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI--IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      -....-++.+.+...+.-|+.+.+.-   +.+++.  ......++-+.+.|++++|...|-+.+..- .|.     .++.
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~~---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l-e~s-----~Vi~  405 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKSQ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL-EPS-----EVIK  405 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC-ChH-----HHHH
Confidence            35566788888888898898877653   333332  345556666788999999998887665431 221     2344


Q ss_pred             HHHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144          163 GYCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ  239 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  239 (580)
                      -|.......+-..+++.+   +. .+...-..|+.+|.+.++.++-.+..+..- .|..  ..-....+..+.+.+-.++
T Consensus       406 kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~  481 (933)
T KOG2114|consen  406 KFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDE  481 (933)
T ss_pred             HhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHH
Confidence            454444455555555555   32 344555678888888888888776655433 1211  1124455666667777777


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      |..+-.....     .......++   -..|++++|+..+..+.
T Consensus       482 a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  482 AELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence            7766554432     233333333   34677888888777764

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.01  E-value=0.43  Score=47.38  Aligned_cols=412  Identities=14%  Similarity=0.086  Sum_probs=233.4

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHH
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVI-TYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILR  194 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~  194 (580)
                      +...|..++.---...+.+.+..+++.+...  .|-.. -|......-.+.|..+.+..+|++.  +++-....|.....
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y~~  121 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSYLA  121 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            3445555554333444456677777777755  44444 4555666666789999999999997  66666777776665


Q ss_pred             HHH-hcCChhHHHHHHHHHHhC-CCC-CChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh---
Q 043144          195 TLC-DSGKLNLAMEVLHKQLEK-ECY-PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK---  268 (580)
Q Consensus       195 ~~~-~~g~~~~A~~~~~~~~~~-~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---  268 (580)
                      .+. ..|+.+.....|+.++.. |.. .....|...|..-..+++......+++.+++.    ....++..-..|.+   
T Consensus       122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~  197 (577)
T KOG1258|consen  122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN  197 (577)
T ss_pred             HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence            544 567888888888887764 211 23456777777777888899999999998875    23334433333321   


Q ss_pred             c------CCHHHHHHHHHHhhhC----CCCCCHHHHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043144          269 E------GRLDEAIKFLNDMPSY----GCQPNVITHNIILRSMC-STGRWMDAERLLAEMVLKGCSPSVVTFNILINFLC  337 (580)
Q Consensus       269 ~------g~~~~A~~~~~~~~~~----~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (580)
                      .      ...+++.++-......    ...+....+..-+.--. ..+..+++.....+...           .--.++-
T Consensus       198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~  266 (577)
T KOG1258|consen  198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQ  266 (577)
T ss_pred             cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHH
Confidence            1      1222222222221110    00001111111111000 00111111111111110           1111222


Q ss_pred             hcCCHHHHHHHHHHhhhCC---C----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 043144          338 RKGLLGRAIDILEKMPKHG---C----TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG  410 (580)
Q Consensus       338 ~~g~~~~a~~~~~~~~~~~---~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  410 (580)
                      ..-...+.+..|+.-.+.-   +    .++..+|..-+..-...|+.+.+.-+|++..-- +..-...|-..+.-....|
T Consensus       267 ~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~  345 (577)
T KOG1258|consen  267 KSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSG  345 (577)
T ss_pred             hhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcC
Confidence            2233334444444443321   1    124567888888888999999999999988642 1122335555555556669


Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhCCCHHHHH---
Q 043144          411 KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI-TYSSLVGGLSREGKVDEAI---  486 (580)
Q Consensus       411 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~---  486 (580)
                      +.+-|..++....+-..+..+.+-..-....-..|++..|..+++.....-  |+.. .-..-+....+.|+.+.+.   
T Consensus       346 ~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~  423 (577)
T KOG1258|consen  346 DVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKN  423 (577)
T ss_pred             chhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHH
Confidence            999999888887766544333333222333446789999999999998763  5533 2233345567888888887   


Q ss_pred             HHHHHHHhCCCCCC--HHHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043144          487 KLFHDLERLGVRPN--VITYNSIML-GLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG  550 (580)
Q Consensus       487 ~~~~~~~~~~~~~~--~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  550 (580)
                      .++.........+.  ...+...++ .+.-.++.+.|..++.++.+. ++++...|..+++.+..++
T Consensus       424 ~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  424 ELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            44444432211111  111111221 234568899999999999976 5788888888888876665

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.97  E-value=0.53  Score=47.87  Aligned_cols=110  Identities=22%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144          362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGL  441 (580)
Q Consensus       362 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  441 (580)
                      .+.+--+.-+...|+-.+|.++-.+..    -||-..|-.-+.+++..+++++-.++-....      .+..|..++.+|
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c  754 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEAC  754 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHH
Confidence            344455555666777777777665543    3676677677777777777776555443332      145677777777


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144          442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFH  490 (580)
Q Consensus       442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  490 (580)
                      .+.|+.++|.+++.+...     ..    -...+|.+.|++.+|.++--
T Consensus       755 ~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  755 LKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence            788888888777765421     11    35567777777777776643

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.96  E-value=0.03  Score=47.83  Aligned_cols=112  Identities=20%  Similarity=0.247  Sum_probs=70.0

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 043144          381 IEYLEIMVSRGCYPDIVTYNTLLTALCKD-----GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLE  455 (580)
Q Consensus       381 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  455 (580)
                      ...|+....  -..+-.+|..+++.|.+.     |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+-       
T Consensus        34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-------  103 (228)
T PF06239_consen   34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-------  103 (228)
T ss_pred             HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-------
Confidence            445555432  245888999999998754     7788888889999999999999999999998754 3211       


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144          456 EMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK  513 (580)
Q Consensus       456 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  513 (580)
                              |... +..+...|  -.+-+-|++++++|...|+-||..++..+++.+.+
T Consensus       104 --------p~n~-fQ~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~  150 (228)
T PF06239_consen  104 --------PRNF-FQAEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGR  150 (228)
T ss_pred             --------cccH-HHHHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcc
Confidence                    1110 11111111  11234456666666666666666666666666533

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.94  E-value=0.0068  Score=42.90  Aligned_cols=56  Identities=11%  Similarity=0.038  Sum_probs=35.6

Q ss_pred             HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          474 GGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ..|.+.+++++|.++++.+...++. +...|...+.++...|++++|.+.+++.++.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3456666666666666666665544 5555666666666666666666666666654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.94  E-value=0.026  Score=46.52  Aligned_cols=56  Identities=20%  Similarity=0.290  Sum_probs=27.3

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      .++..+...|++++|..+.+.+....+- +...|..++.+|...|+..+|.++|+++
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~-~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALDPY-DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3444444555555555555555544332 4445555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.89  E-value=0.1  Score=52.22  Aligned_cols=120  Identities=21%  Similarity=0.180  Sum_probs=81.4

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhCCCHHHHHHHHHHHHhCC--C-CCCHHHHHHHHHHHHhcCCHHH
Q 043144          444 VGKTEQAMKLLEEMRTKGLKPDTITYSSL-VGGLSREGKVDEAIKLFHDLERLG--V-RPNVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       444 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~--~-~~~~~~~~~l~~~~~~~g~~~~  519 (580)
                      ....+.|.++++.+...  -|+...|... .+.+...|++++|.+.|+++....  . +.....+--+++.+....+|++
T Consensus       246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~  323 (468)
T PF10300_consen  246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE  323 (468)
T ss_pred             CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence            45677888888888875  4666555433 455677888999999998765311  1 1233455667778888899999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHhCC
Q 043144          520 AIDILADMVTRSCKPTEATYTILIEGI-AYEGLA-------KEALDLLNQLCSRG  566 (580)
Q Consensus       520 A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~-------~~A~~~~~~~~~~g  566 (580)
                      |.+.+.++.+.+ .-+..+|..+..+| ...|+.       ++|.++++++-...
T Consensus       324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~  377 (468)
T PF10300_consen  324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLK  377 (468)
T ss_pred             HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence            999999988763 33455555444443 677888       88888888775443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.84  E-value=0.0039  Score=44.84  Aligned_cols=62  Identities=18%  Similarity=0.075  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTR--SCKPT----EATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      .+|+.+..+|...|++++|++.+++.++.  ...++    ..++..++.++...|++++|.+++++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666666666666666666665532  01111    3345556666666666666666666654

...

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.79  E-value=0.034  Score=49.44  Aligned_cols=102  Identities=19%  Similarity=0.124  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP---TEATYTIL  542 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l  542 (580)
                      .|+.-+ .+...|++..|...|...++..+..  ....+.+|..++...|++++|..+|..+.+. ++.   -+..+..|
T Consensus       144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~-~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKD-YPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHh-CCCCCCChHHHHHH
Confidence            455544 4455667888888888888754431  1345667888888889999998888888865 222   25778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144          543 IEGIAYEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       543 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      +.+..+.|+.++|+..|+++.+.-+..+.
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a  250 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence            88888899999999999998887655543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.73  E-value=0.48  Score=45.10  Aligned_cols=166  Identities=15%  Similarity=0.063  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144          363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRG---CYPDIVTYNTLLTALCK---DGKVDVAVEILNQLSNKHCSPVLITYNT  436 (580)
Q Consensus       363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~  436 (580)
                      +...++-+|....+++.-+++.+.+....   +.-....-....-++.+   .|+.++|+.++..+......+++.+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            33445556777778888888888776541   11122223334445556   7778888888777555455677777777


Q ss_pred             HHHHHHh---------CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC----HHHHHHHH---HHHH-hCC---
Q 043144          437 VIDGLSK---------VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK----VDEAIKLF---HDLE-RLG---  496 (580)
Q Consensus       437 l~~~~~~---------~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~---~~~~-~~~---  496 (580)
                      +...|-.         ....++|...|.+.-+.  .||..+--.++..+...|.    -.+..++-   ..+. +.|   
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            7666531         11245555555554332  2333322222222222222    11222222   1111 122   


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          497 VRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ...+...+.+++.++.-.|++++|.+.+++|.+.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            1223344455666666666666666666666644

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.71  E-value=0.93  Score=46.86  Aligned_cols=215  Identities=14%  Similarity=0.100  Sum_probs=133.0

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHh----CC-----CCCC-------hhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVY----HG-----DIPD-------IIPCTSLIRGFCKVGKTRKATRVMEIVE  146 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  146 (580)
                      ..++.+.++.++...+++-.=.-+++...+    .+     ...|       ....-.-+..+.+..-++-|..+-+.  
T Consensus       282 s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~--  359 (933)
T KOG2114|consen  282 SNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKS--  359 (933)
T ss_pred             CccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHh--
Confidence            445677788888887776554444444322    11     0001       12234566777888888888877643  


Q ss_pred             hCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 043144          147 DSGAVPDV--ITYNVLISGYCRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI  222 (580)
Q Consensus       147 ~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  222 (580)
                       .+.+++.  ......++.+.+.|++++|...|-+. +. .|     ..++.-|....+..+-..+++.+.+.|.. +..
T Consensus       360 -~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~d  432 (933)
T KOG2114|consen  360 -QHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSD  432 (933)
T ss_pred             -cCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cch
Confidence             2222222  23444555666789999999887765 32 22     23455566666777777788888888754 455


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144          223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC  302 (580)
Q Consensus       223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  302 (580)
                      .-..|+.+|.+.++.++-.+..+... .|..  ..-....+..+.+.+-.++|..+-.+...     +......++   -
T Consensus       433 httlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ill---e  501 (933)
T KOG2114|consen  433 HTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILL---E  501 (933)
T ss_pred             hHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHH---H
Confidence            56778899999999988777666544 2211  11244566777777878887776655432     333344443   4


Q ss_pred             hcCChHHHHHHHHHH
Q 043144          303 STGRWMDAERLLAEM  317 (580)
Q Consensus       303 ~~~~~~~a~~~~~~~  317 (580)
                      ..+++++|.+++..+
T Consensus       502 ~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  502 DLHNYEEALRYISSL  516 (933)
T ss_pred             HhcCHHHHHHHHhcC
Confidence            468889998888765

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.64  E-value=0.0034  Score=45.18  Aligned_cols=22  Identities=41%  Similarity=0.542  Sum_probs=8.4

Q ss_pred             HHHHHHHHhcCChhHHHHHHHH
Q 043144          158 NVLISGYCRLGEIDNALQVLER  179 (580)
Q Consensus       158 ~~l~~~~~~~g~~~~A~~~~~~  179 (580)
                      +.++..|...|++++|+..|++
T Consensus         9 ~~la~~~~~~~~~~~A~~~~~~   30 (78)
T PF13424_consen    9 NNLARVYRELGRYDEALDYYEK   30 (78)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            3333444444444444444333

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.61  E-value=0.65  Score=43.72  Aligned_cols=106  Identities=17%  Similarity=0.157  Sum_probs=59.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 043144          399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR  478 (580)
Q Consensus       399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~  478 (580)
                      .+..+.-+...|+...|.++-.++.    .|+...|...+.+++..++|++-.++...      +-.+.-|...+.+|.+
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~  249 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLK  249 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHH
Confidence            3444445555666666655544442    25566666666677777766665554322      1123456666666666


Q ss_pred             CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144          479 EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDIL  524 (580)
Q Consensus       479 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  524 (580)
                      .|+..+|..+..++     + +    ..-+..|.+.|++.+|.+..
T Consensus       250 ~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  250 YGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             CCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHH
Confidence            67666666665552     1 1    23444566666666666543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.60  E-value=0.7  Score=44.01  Aligned_cols=31  Identities=13%  Similarity=0.096  Sum_probs=18.3

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR  390 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  390 (580)
                      +-..+..++.+..-.|+.++|.+..+++.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4444555556666666666666666666554

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.42  Score=43.14  Aligned_cols=141  Identities=13%  Similarity=0.101  Sum_probs=73.7

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043144          231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDA  310 (580)
Q Consensus       231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  310 (580)
                      ....|++.+|..+|+........ +...--.++.+|...|+.+.|..++..+....-.........-+..+.+.....+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~  222 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEI  222 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCH
Confidence            44566777777777776655322 34455566777777777777777777765432111112212223333333333333


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHHhcC
Q 043144          311 ERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH--GCTPNSLSYNPVLHGFCKEK  375 (580)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~  375 (580)
                      ..+-...-..  +.|...-..+...+...|+.+.|.+.+-.+.+.  |.. |...-..++..+.-.|
T Consensus       223 ~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g  286 (304)
T COG3118         223 QDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence            3333333322  224555556666666677777766665555443  222 4444555555555444

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.58  E-value=0.077  Score=48.22  Aligned_cols=152  Identities=16%  Similarity=0.104  Sum_probs=88.4

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHhCCCHH
Q 043144          373 KEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID----GLSKVGKTE  448 (580)
Q Consensus       373 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~  448 (580)
                      .+|++.+|-..++++++.- +.|...+...=.+|.-.|+.+.-...++++...- .++...|..+-.    ++...|-++
T Consensus       115 ~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             ccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhHHHhccch
Confidence            3566666777777777652 3355566666677777777777777777665431 244433333322    334677777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP----NVITYNSIMLGLCKARQTYRAIDIL  524 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~  524 (580)
                      +|.+.-++..+.+ +-|.-.-..+.+.+-..|+..++.++..+-... .+.    -...|-..+..+...+.++.|+++|
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~-Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDD-WRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccc-hhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            7777777776654 335555556666667777777777776554321 110    0122333334455567777777777


Q ss_pred             HHHH
Q 043144          525 ADMV  528 (580)
Q Consensus       525 ~~~~  528 (580)
                      ++-+
T Consensus       271 D~ei  274 (491)
T KOG2610|consen  271 DREI  274 (491)
T ss_pred             HHHH
Confidence            6543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.57  E-value=0.059  Score=41.64  Aligned_cols=91  Identities=19%  Similarity=0.138  Sum_probs=43.0

Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCC
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT---EATYTILIEGIAYEGL  551 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~  551 (580)
                      +.+..|+++.|++.|.+....-++ +...||.-..++.-+|+.++|++-+++.++..-+..   -..|..-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            344555555555555555544332 444555555555555555555555555544311111   1122223334445555


Q ss_pred             HHHHHHHHHHHHhCC
Q 043144          552 AKEALDLLNQLCSRG  566 (580)
Q Consensus       552 ~~~A~~~~~~~~~~g  566 (580)
                      .+.|+.-|+...+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            555555555555544

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.18  Score=45.36  Aligned_cols=146  Identities=11%  Similarity=0.065  Sum_probs=84.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHH---HHHHHHhcCCh
Q 043144          126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNT---ILRTLCDSGKL  202 (580)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~g~~  202 (580)
                      .......|++.+|..+|+...... +.+...-..++.+|...|+.+.|..++..++.......+..   -+..+.+....
T Consensus       141 ~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~  219 (304)
T COG3118         141 AKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT  219 (304)
T ss_pred             hhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence            334567777777777777777665 34455566677777777777777777777732222222222   23444444444


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144          203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK--GCIPDVVTYNVLVNGICKEGRLDEA  275 (580)
Q Consensus       203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A  275 (580)
                      .+...+-++.-..  +-|...-..+...+...|+.+.|.+.+-.+.++  |.. |...-..++..+.-.|.-+.+
T Consensus       220 ~~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~  291 (304)
T COG3118         220 PEIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPL  291 (304)
T ss_pred             CCHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHH
Confidence            4444433333221  225666666777777778888777766666544  222 455566666666666643333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.46  E-value=0.024  Score=46.72  Aligned_cols=75  Identities=17%  Similarity=0.245  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCchhHHHH
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC-----SRGVVKKSSAEQV  576 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~~~~~  576 (580)
                      .+...++..+...|++++|...+++++... |.+...|..++.+|...|+..+|.+.|+++.     +.|+.|++....+
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l  141 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL  141 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence            356677888889999999999999999874 7889999999999999999999999998873     4688887776654


Q ss_pred             H
Q 043144          577 A  577 (580)
Q Consensus       577 ~  577 (580)
                      .
T Consensus       142 ~  142 (146)
T PF03704_consen  142 Y  142 (146)
T ss_dssp             H
T ss_pred             H
Confidence            3

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.44  E-value=0.83  Score=43.02  Aligned_cols=109  Identities=18%  Similarity=0.205  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHH
Q 043144          293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFC  372 (580)
Q Consensus       293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  372 (580)
                      +.+..+.-+...|+...|.++-.+..    -||...|-..+.+++..++|++-.++-..  +    -++.-|..++..|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence            34444556666777777777655542    35777777777888888888776664332  1    14566777777888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 043144          373 KEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ  421 (580)
Q Consensus       373 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  421 (580)
                      +.|+..+|..+...+     . +    ..-+..|.++|++.+|.+.-.+
T Consensus       249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence            888777777776652     1 1    3445667777777777665433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.42  E-value=0.11  Score=51.20  Aligned_cols=160  Identities=18%  Similarity=0.232  Sum_probs=111.2

Q ss_pred             HHHHHHcCChHHHHHHHH--HHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144           91 LRRLVRNGELEEGFKFLE--SMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG  168 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  168 (580)
                      .....-+++++++.++.+  +++.. .|  ....+.++.-+.+.|..+.|+.+-.         |+.+   -.....+.|
T Consensus       268 fk~av~~~d~~~v~~~i~~~~ll~~-i~--~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg  332 (443)
T PF04053_consen  268 FKTAVLRGDFEEVLRMIAASNLLPN-IP--KDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLG  332 (443)
T ss_dssp             HHHHHHTT-HHH-----HHHHTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT
T ss_pred             HHHHHHcCChhhhhhhhhhhhhccc-CC--hhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcC
Confidence            456677899999887775  22211 22  3447788888899999999998853         3322   355567899


Q ss_pred             ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144          169 EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMR  248 (580)
Q Consensus       169 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  248 (580)
                      +++.|.++.++.   ++...|..|+....+.|+++-|.+.|.+..+         +..|+-.|.-.|+.+.-.++.+...
T Consensus       333 ~L~~A~~~a~~~---~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~  400 (443)
T PF04053_consen  333 NLDIALEIAKEL---DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE  400 (443)
T ss_dssp             -HHHHHHHCCCC---STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhc---CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence            999999887765   4777999999999999999999999987643         5677788888999988888888777


Q ss_pred             HcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          249 NKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      ..|      -+|....++.-.|+.++..+++.+..
T Consensus       401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  401 ERG------DINIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             HTT-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             Hcc------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            654      25555666677889998888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.40  E-value=0.068  Score=51.40  Aligned_cols=64  Identities=13%  Similarity=0.046  Sum_probs=39.1

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144          430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT----ITYSSLVGGLSREGKVDEAIKLFHDLERL  495 (580)
Q Consensus       430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  495 (580)
                      +...++.+..+|...|++++|+..|++.++.  .|+.    .+|..+..+|...|++++|+..++++.+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3455666666666666666666666666654  3332    23566666666666666666666666653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.34  E-value=0.71  Score=42.79  Aligned_cols=126  Identities=12%  Similarity=0.121  Sum_probs=58.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCCHHHH---
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGC-----YPDIVTYNTLLTALCKDGKVDVAVEILNQLSNK----HCSPVLITY---  434 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~---  434 (580)
                      +..++...+.++++++.|+...+-..     .....++..|...|.+..|+++|.-+.....+.    ++..-..-|   
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            44455555556666666655543110     011225556666666666666665554443221    111101111   


Q ss_pred             --HHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144          435 --NTVIDGLSKVGKTEQAMKLLEEMRT----KGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDL  492 (580)
Q Consensus       435 --~~l~~~~~~~g~~~~A~~~~~~m~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  492 (580)
                        ..+.-++-..|+...|.+.-++..+    .|-.+ -......+.+.|...|+.+.|+.-|+.+
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence              1223334455665555555555432    23111 1122344555666677766666666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.31  E-value=0.42  Score=47.66  Aligned_cols=77  Identities=17%  Similarity=0.214  Sum_probs=46.1

Q ss_pred             cccCCCccccccccCCCCCcccHHHHHHHHHHcCChHHHHHHH---------------HHHHhCCCCCChhhHHHHHHHH
Q 043144           65 HLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFL---------------ESMVYHGDIPDIIPCTSLIRGF  129 (580)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~---------------~~~~~~~~~~~~~~~~~l~~~~  129 (580)
                      +.+.|.+..+............|..|.......-+++-|.+.|               +++.++|..|+..   .++..+
T Consensus       566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~i---LlA~~~  642 (1081)
T KOG1538|consen  566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDL---LLADVF  642 (1081)
T ss_pred             hhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHH---HHHHHH
Confidence            3455555555555555444556666655544444555555444               4445666666664   345567


Q ss_pred             HhcCChHHHHHHHHH
Q 043144          130 CKVGKTRKATRVMEI  144 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~  144 (580)
                      +-.|.+.+|.++|.+
T Consensus       643 Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  643 AYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HhhhhHHHHHHHHHH
Confidence            888999999998865

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.24  E-value=0.11  Score=51.25  Aligned_cols=158  Identities=18%  Similarity=0.207  Sum_probs=101.0

Q ss_pred             HHHHhcCChhHHHHHHHHcCCCC--CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhH
Q 043144          162 SGYCRLGEIDNALQVLERMSVAP--DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQ  239 (580)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  239 (580)
                      ....-.|+++++.++.+.-..-|  +....+.++..+.+.|..+.|+++..         |..   .-.+...+.|+++.
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~~  336 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLDI  336 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HHH
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHHH
Confidence            33345778888766665221111  13447788888888888888887632         222   22345567888888


Q ss_pred             HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144          240 AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       240 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  319 (580)
                      |.++.++.      .+...|..|......+|+++-|.+.|.+..+         +..++-.|...|+.+.-.++.+....
T Consensus       337 A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~  401 (443)
T PF04053_consen  337 ALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE  401 (443)
T ss_dssp             HHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence            88766543      3677899999999999999999999988763         55667778888888887777777766


Q ss_pred             cCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          320 KGCSPSVVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       320 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                      .|      -++....++.-.|+.+++.+++.+.
T Consensus       402 ~~------~~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  402 RG------DINIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             cc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            54      2455555666678888888887654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK11906 transcriptional regulator; Provisional

Probab=96.12  E-value=0.33  Score=46.97  Aligned_cols=116  Identities=13%  Similarity=0.039  Sum_probs=64.1

Q ss_pred             hHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHh---------cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144          100 LEEGFKFLESMVYH--GDIPDIIPCTSLIRGFCK---------VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG  168 (580)
Q Consensus       100 ~~~A~~~~~~~~~~--~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  168 (580)
                      .+.|+.+|.+++..  ..|.....|..+.-++..         ..+..+|.++-++..+.+ +.|+.....++.+..-.+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence            34566677777622  122223444444333321         123345566666666666 566666666666666666


Q ss_pred             ChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          169 EIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       169 ~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      +++.|..+|++. ...|| ..+|....-.+.-.|+.++|.+.+++.++.+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs  402 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLE  402 (458)
T ss_pred             chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence            677777777766 33343 3445555555556666666666666655543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.07  E-value=1  Score=40.30  Aligned_cols=222  Identities=20%  Similarity=0.137  Sum_probs=100.2

Q ss_pred             CChHHHHHHHHHHHHcCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043144          305 GRWMDAERLLAEMVLKGCSP-SVVTFNILINFLCRKGLLGRAIDILEKMPKH-GCTPNSLSYNPVLHGFCKEKKMDRAIE  382 (580)
Q Consensus       305 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~  382 (580)
                      +....+...+.......... ...........+...+.+..+...+...... ........+......+...+++..+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            34444444444444432110 2344455555555666666666665555431 112234444455555555555666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144          383 YLEIMVSRGCYPDIVTYNTLLT-ALCKDGKVDVAVEILNQLSNKHC--SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT  459 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  459 (580)
                      .+.........+ ......... .+...|+++.|...+........  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666555432222 111111222 45555666666666655543211  01122222223334445555555555555554


Q ss_pred             CCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          460 KGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       460 ~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      .. .. ....+..+...+...++++.|...+......... ....+..+...+...+.++++...+.+...
T Consensus       196 ~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            32 11 2344444555555555555555555555443211 122333333333344445555555555543

>PRK11906 transcriptional regulator; Provisional

Probab=96.03  E-value=0.8  Score=44.46  Aligned_cols=78  Identities=13%  Similarity=0.017  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      +|.++.++..+.+ +-|......+..+....|+++.|...|+++...++. ...+|......+...|+.++|.+.+++.+
T Consensus       322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            3444444444443 234444444444444444455555555555444322 23334444444444455555555555544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.17  Score=46.16  Aligned_cols=150  Identities=11%  Similarity=0.044  Sum_probs=86.0

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHH----HHHHHhcCChh
Q 043144          130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTI----LRTLCDSGKLN  203 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l----~~~~~~~g~~~  203 (580)
                      .-.|+..+|-..++++.+.- |.|...+..-=++|.-.|+.+.-...++++  ...+|...|..+    .-++...|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            45666667666676666543 566666666666666677766666666666  223444333322    22344567777


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC---CHhHHHHHHHHHHhcCCHHHHHHHHH
Q 043144          204 LAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP---DVVTYNVLVNGICKEGRLDEAIKFLN  280 (580)
Q Consensus       204 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~  280 (580)
                      +|.+.-++.++.+ +.|...-.++...+-..|++.++.+...+-...--..   -...|-...-.+...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            7777766666654 2355555556666666677777766655433211000   12223334445566677888888776


Q ss_pred             H
Q 043144          281 D  281 (580)
Q Consensus       281 ~  281 (580)
                      .
T Consensus       272 ~  272 (491)
T KOG2610|consen  272 R  272 (491)
T ss_pred             H
Confidence            5

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.01  E-value=0.15  Score=40.34  Aligned_cols=50  Identities=10%  Similarity=0.125  Sum_probs=33.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHH
Q 043144          497 VRPNVITYNSIMLGLCKARQTYRAIDILADMVTR-SCKPTEATYTILIEGI  546 (580)
Q Consensus       497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~  546 (580)
                      ..|+..+..+++.+|+..|++..|.++++...+. +++.+...|..|++=+
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            3466777777777777777777777777776543 4555666777666544

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.00  E-value=0.051  Score=52.23  Aligned_cols=104  Identities=15%  Similarity=0.101  Sum_probs=77.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 043144          463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV---ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATY  539 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  539 (580)
                      +.+...++.+..+|...|++++|+..|++.++.++. +.   .+|..+..+|...|+.++|++.++++++.+ .+   .|
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f  146 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KF  146 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hH
Confidence            346778999999999999999999999999987654 23   458899999999999999999999999752 22   22


Q ss_pred             HHHHH--HHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144          540 TILIE--GIAYEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       540 ~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      ..+..  .+..-.+.++..++++.+.+-|....+
T Consensus       147 ~~i~~DpdL~plR~~pef~eLlee~rk~G~~~g~  180 (453)
T PLN03098        147 STILNDPDLAPFRASPEFKELQEEARKGGEDIGS  180 (453)
T ss_pred             HHHHhCcchhhhcccHHHHHHHHHHHHhCCccCC
Confidence            21111  112233445778888888888875543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.99  E-value=0.11  Score=48.82  Aligned_cols=89  Identities=17%  Similarity=0.072  Sum_probs=44.7

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCC-----CCCC---------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHG-----DIPD---------IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT  156 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  156 (580)
                      ...|.+.|++..|..-|+.++..-     .+++         ...++.+.-+|.+.+++..|++.-+.++..+ ++|+..
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence            456778888888888888876431     1110         1122333334444444444444444444444 344444


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHc
Q 043144          157 YNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       157 ~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      .-.-+.++...|+++.|+..|+++
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHH
Confidence            444444444444444444444444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.62  Score=40.68  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcC-CCCCcchHHHHHHHHHhc
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMS-VAPDVVTYNTILRTLCDS  199 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~  199 (580)
                      .|.....+|....++++|...+.+..+.. ..+...|. -..      .++.|.-+.+++. .+.-+..|+.-...|...
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~y-Ennrslfh-AAK------ayEqaamLake~~klsEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNRSLFH-AAK------AYEQAAMLAKELSKLSEVVDLYEKASELYVEC  104 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHH-HhcccHHH-HHH------HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            34444556666777777776666555321 11111111 112      2244444444442 212233445555666666


Q ss_pred             CChhHHHHHHHHHH
Q 043144          200 GKLNLAMEVLHKQL  213 (580)
Q Consensus       200 g~~~~A~~~~~~~~  213 (580)
                      |..+.|-..++++-
T Consensus       105 GspdtAAmaleKAa  118 (308)
T KOG1585|consen  105 GSPDTAAMALEKAA  118 (308)
T ss_pred             CCcchHHHHHHHHH
Confidence            66666655555543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.98  E-value=1.1  Score=39.86  Aligned_cols=175  Identities=19%  Similarity=0.169  Sum_probs=85.1

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----
Q 043144          370 GFCKEKKMDRAIEYLEIMVSRGCY--PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----  443 (580)
Q Consensus       370 ~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  443 (580)
                      .-.+.|++++|...|+.+....+.  -...+...++.++.+.++++.|+..+++...........-|-..+.+++.    
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i  122 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccC
Confidence            344556666666666666654221  11224555555666666666666666666655422222233333333331    


Q ss_pred             ---CCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144          444 ---VGKT---EQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT  517 (580)
Q Consensus       444 ---~g~~---~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  517 (580)
                         ..+.   ..|..-|++++..  -||..             -...|..-+..+... +   ...=..+.+-|.+.|.+
T Consensus       123 ~~~~rDq~~~~~A~~~f~~~i~r--yPnS~-------------Ya~dA~~~i~~~~d~-L---A~~Em~IaryY~kr~~~  183 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKELVQR--YPNSR-------------YAPDAKARIVKLNDA-L---AGHEMAIARYYLKRGAY  183 (254)
T ss_pred             CccccCHHHHHHHHHHHHHHHHH--CCCCc-------------chhhHHHHHHHHHHH-H---HHHHHHHHHHHHHhcCh
Confidence               1222   2333334444433  12211             111222222222110 0   00012345567777777


Q ss_pred             HHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          518 YRAIDILADMVTRSCKPT---EATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       518 ~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      -.|..-++++++. .+..   ...+..+.++|.+.|-.++|.+.-+-+..
T Consensus       184 ~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         184 VAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            7777777777765 2322   34555666777777777777666554443

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.98  E-value=2.3  Score=43.63  Aligned_cols=110  Identities=18%  Similarity=0.178  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      ..+.+--+.-+...|+..+|.++-.+..    -||-..|-.-+.+++..+++++-+++-++..      .+.-|.-.+.+
T Consensus       684 dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~  753 (829)
T KOG2280|consen  684 DLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEA  753 (829)
T ss_pred             cCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHH
Confidence            3344555666777888888888776654    4677777777888888888887666655443      13346667778


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 043144          511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLL  559 (580)
Q Consensus       511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  559 (580)
                      |.+.|+.++|.+++-+..     +..    ....+|.+.|++.+|.++.
T Consensus       754 c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~A  793 (829)
T KOG2280|consen  754 CLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADLA  793 (829)
T ss_pred             HHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHHH
Confidence            888888888888876543     111    4566777777777777654

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.91  E-value=0.21  Score=47.06  Aligned_cols=96  Identities=14%  Similarity=0.017  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      +++.+..++.+.+++.+|++.-.+....++. |+.....-..+|...|+++.|+..|+++++.. |.|..+-..|+..-.
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~  336 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ  336 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            3445555666666666666666666655533 55555555666666666666666666666542 333334444444433


Q ss_pred             hcCCHH-HHHHHHHHHHhC
Q 043144          548 YEGLAK-EALDLLNQLCSR  565 (580)
Q Consensus       548 ~~g~~~-~A~~~~~~~~~~  565 (580)
                      +..+.. ...++|..|...
T Consensus       337 k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  337 KIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHhhc
Confidence            333322 335566665543

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.82  E-value=1.9  Score=41.40  Aligned_cols=425  Identities=11%  Similarity=0.028  Sum_probs=203.2

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      .+|-.|++-+-.+|.+++..++++++..- .|--..+|...+.+-....++.....+|.+.....  .+...|...+..-
T Consensus        43 ~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YI  119 (660)
T COG5107          43 LSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYI  119 (660)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHH
Confidence            58999999999999999999999999653 33345678888888888899999999999998864  4566777666655


Q ss_pred             HhcC-----C----hhHHHHHHHH-cCCCC-CcchHHHHHHHHHh---cC------ChhHHHHHHHHHHhCCCCCChhhH
Q 043144          165 CRLG-----E----IDNALQVLER-MSVAP-DVVTYNTILRTLCD---SG------KLNLAMEVLHKQLEKECYPDVITY  224 (580)
Q Consensus       165 ~~~g-----~----~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~---~g------~~~~A~~~~~~~~~~~~~~~~~~~  224 (580)
                      .+.+     +    +-+|.++.-. +.+.| ....|+..+..+-.   .|      +++.....|.+++...+..=...|
T Consensus       120 Rr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nleklW  199 (660)
T COG5107         120 RRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLEKLW  199 (660)
T ss_pred             HhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHHHHH
Confidence            4433     1    1223332222 23444 34456665544332   33      344555666666654211111112


Q ss_pred             HHH------HHH-----HH--hcCCHhHHHHHHHHHHHc--CCC----CCHhHHHH-----------HHHHHHhc-----
Q 043144          225 TIL------IEA-----TC--KESGVGQAMKLLDEMRNK--GCI----PDVVTYNV-----------LVNGICKE-----  269 (580)
Q Consensus       225 ~~l------i~~-----~~--~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~~-----------l~~~~~~~-----  269 (580)
                      ...      +.-     +.  ..--+-.|.+.++++...  |..    .+..+++.           +|.--...     
T Consensus       200 ~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~  279 (660)
T COG5107         200 KDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLG  279 (660)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHhhHhhcCCcccC
Confidence            111      000     00  011133455555554321  211    01122221           11110000     


Q ss_pred             CC-HHH-HHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043144          270 GR-LDE-AIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAID  347 (580)
Q Consensus       270 g~-~~~-A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  347 (580)
                      |+ ..+ .--++++.... +.-....|.-.-.-+...++-+.|.+......+.  .|+  .--.+...|...++.+....
T Consensus       280 ~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~lse~yel~nd~e~v~~  354 (660)
T COG5107         280 GRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFLSEYYELVNDEEAVYG  354 (660)
T ss_pred             CCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeHHHHHhhcccHHHHhh
Confidence            00 000 00011111100 0111122222222233344555555444332221  122  11122233333444444444


Q ss_pred             HHHHhhhCCCCCCHhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144          348 ILEKMPKHGCTPNSLSYNPVLHGFCK---EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSN  424 (580)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  424 (580)
                      .|+...+.     ...-..++..=..   .|+++...+++-+-.    ..-..+|...+....+..-++.|+.+|-+..+
T Consensus       355 ~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~----~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk  425 (660)
T COG5107         355 CFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRI----NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRK  425 (660)
T ss_pred             hHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHH----hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            44433221     0000000000000   112211111111101    11234555666666666667777777777777


Q ss_pred             CC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--
Q 043144          425 KH-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTIT-YSSLVGGLSREGKVDEAIKLFHDLERLGVRPN--  500 (580)
Q Consensus       425 ~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--  500 (580)
                      .+ ..+++..+++++..++ .|++.-|..+|+-=...  -||... .+-.+..+...++-+.|..+|+..... +..+  
T Consensus       426 ~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~  501 (660)
T COG5107         426 EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQL  501 (660)
T ss_pred             cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhh
Confidence            66 4566667777776554 45666777777654433  233333 234455566677777777777755421 1112  


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          501 VITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       501 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ..+|..++.--..-|+...+..+-+++.+.
T Consensus       502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         502 KRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             hHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            456777777667777777777766666543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.81  E-value=1.6  Score=40.52  Aligned_cols=223  Identities=13%  Similarity=0.045  Sum_probs=113.6

Q ss_pred             hcCCHHHHHHHHHHhhhCCCCCCHhhH-------HHHHHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCH-----
Q 043144          338 RKGLLGRAIDILEKMPKHGCTPNSLSY-------NPVLHGFCKEK-KMDRAIEYLEIMVSR--------GCYPDI-----  396 (580)
Q Consensus       338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~-~~~~A~~~~~~~~~~--------~~~~~~-----  396 (580)
                      +.|+.+.|..++.+........++...       ..........+ +++.|..++++..+.        ...|+.     
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            456666666666555443211122111       11222233444 666666666554332        122333     


Q ss_pred             HHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043144          397 VTYNTLLTALCKDGKV---DVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLV  473 (580)
Q Consensus       397 ~~~~~li~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~  473 (580)
                      .++..++.+|...+..   ++|..+++.+..... ..+.++..-+..+.+.++.+++.+.+.+|+.. +.-....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHH
Confidence            2566677777776654   456666666655442 22455555666777788899999999999875 221333444444


Q ss_pred             HHH---HhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHH----HHHHHhcCC------HHHHHHHHHHHHHc-CCCCCHHH
Q 043144          474 GGL---SREGKVDEAIKLFHDLERLGVRPNVI-TYNSI----MLGLCKARQ------TYRAIDILADMVTR-SCKPTEAT  538 (580)
Q Consensus       474 ~~~---~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l----~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~  538 (580)
                      ..+   ... ....|...+..+......|... ....+    +......++      .+...+++....+. +.+.+..+
T Consensus       163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~  241 (278)
T PF08631_consen  163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA  241 (278)
T ss_pred             HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence            444   333 3456667776665433343332 11111    111222222      33333344432221 22333333


Q ss_pred             H---HHH----HHHHHhcCCHHHHHHHHHHHH
Q 043144          539 Y---TIL----IEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       539 ~---~~l----~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      -   ..+    +..+.+.++|++|.++++-..
T Consensus       242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            2   222    345678899999999998654

It is also involved in sporulation [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.81  E-value=0.029  Score=34.78  Aligned_cols=38  Identities=11%  Similarity=0.112  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 043144          504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTIL  542 (580)
Q Consensus       504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  542 (580)
                      +..+..+|...|++++|+++++++++.. |.|...|..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L   41 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence            4445555555555555555555555542 4444444444

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.80  E-value=0.19  Score=39.79  Aligned_cols=98  Identities=12%  Similarity=0.107  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG  475 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  475 (580)
                      ..++..++.++++.|+++....+++..=.-+......           .+.         --......|+..++.+++.+
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~-----------~~~---------~~~~spl~Pt~~lL~AIv~s   61 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKK-----------EGD---------YPPSSPLYPTSRLLIAIVHS   61 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccc-----------cCc---------cCCCCCCCCCHHHHHHHHHH
Confidence            4456666666777777666666665432211100000           000         01122456888888888888


Q ss_pred             HHhCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHh
Q 043144          476 LSREGKVDEAIKLFHDLE-RLGVRPNVITYNSIMLGLCK  513 (580)
Q Consensus       476 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~  513 (580)
                      |+..|++..|.++.+... ..+++-+...|..|+.-...
T Consensus        62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            888888888888888875 45666667778777764443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.77  E-value=3.8  Score=44.51  Aligned_cols=28  Identities=11%  Similarity=0.241  Sum_probs=18.6

Q ss_pred             hHHHHHHHHHHhcC--CHHHHHHHHHHhhh
Q 043144          257 VTYNVLVNGICKEG--RLDEAIKFLNDMPS  284 (580)
Q Consensus       257 ~~~~~l~~~~~~~g--~~~~A~~~~~~~~~  284 (580)
                      .-...++..|.+.+  .+++|+....+...
T Consensus       791 ~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~  820 (1265)
T KOG1920|consen  791 KFNLFILTSYVKSNPPEIEEALQKIKELQL  820 (1265)
T ss_pred             hhhHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            34446777787777  66777777666654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.76  E-value=0.99  Score=38.10  Aligned_cols=116  Identities=10%  Similarity=0.022  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITY--SSLVGGLSREGKVDEAIKLFHDLERLGVRPNV--ITYNSIMLGLCKARQTYRAIDIL  524 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~  524 (580)
                      +.....+++...+..-...++  ..+...+...|++++|...++.........+.  .+-..|.......|.+++|+..+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            445555555544211111122  23455678899999999999987753222121  22234667778889999999998


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          525 ADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       525 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +.....++  .......-++++...|+.++|+.-|++..+.+
T Consensus       150 ~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         150 DTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             hccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence            88765433  22334556788999999999999999999987

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.69  E-value=0.52  Score=47.32  Aligned_cols=178  Identities=16%  Similarity=0.179  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH------HHHHHHHHHh----cCChh
Q 043144          102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT------YNVLISGYCR----LGEID  171 (580)
Q Consensus       102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~------~~~l~~~~~~----~g~~~  171 (580)
                      -..-+|.-++.. .||.   ...++....-.||-+.+++++....+.+.-..+.+      |...+..++.    ..+.+
T Consensus       175 ~G~G~f~L~lSl-LPp~---~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~  250 (468)
T PF10300_consen  175 FGFGLFNLVLSL-LPPK---VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLE  250 (468)
T ss_pred             HHHHHHHHHHHh-CCHH---HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHH
Confidence            456667777665 4443   45667777788899999988888776543333333      2222332222    34567


Q ss_pred             HHHHHHHHc-CCCCCcchHH-HHHHHHHhcCChhHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 043144          172 NALQVLERM-SVAPDVVTYN-TILRTLCDSGKLNLAMEVLHKQLEKEC---YPDVITYTILIEATCKESGVGQAMKLLDE  246 (580)
Q Consensus       172 ~A~~~~~~~-~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~  246 (580)
                      .|.++++.+ ..-|+...|. .-++.+...|++++|++.|+++.....   +.....+--+.-.+.-.+++++|...|..
T Consensus       251 ~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~  330 (468)
T PF10300_consen  251 EAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR  330 (468)
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence            888888887 4346655554 345667778999999999987664211   12344555677778889999999999999


Q ss_pred             HHHcCCCCCHhHHHHHH-HHHHhcCCH-------HHHHHHHHHhhh
Q 043144          247 MRNKGCIPDVVTYNVLV-NGICKEGRL-------DEAIKFLNDMPS  284 (580)
Q Consensus       247 ~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~  284 (580)
                      +.+.. .-+...|.-+. .++...|+.       ++|.++|.++..
T Consensus       331 L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  331 LLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            98763 22333444333 344567777       899999988764

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.65  E-value=2.4  Score=41.37  Aligned_cols=425  Identities=11%  Similarity=0.082  Sum_probs=201.6

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHc
Q 043144          102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL-GEIDNALQVLERM  180 (580)
Q Consensus       102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~  180 (580)
                      ....+|+.+..+ .+.|+..|...+.-+-+.+.+.+...+|..|.... |.++..|..-....... -+++.|+.+|.+.
T Consensus        89 rIv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   89 RIVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            445667777665 56689999999988888888999999999998765 55565665544443343 3489999998876


Q ss_pred             -CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh---------hHHHH------HHHHHhc---------
Q 043144          181 -SVAPDV-VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI---------TYTIL------IEATCKE---------  234 (580)
Q Consensus       181 -~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l------i~~~~~~---------  234 (580)
                       ...||. ..|....+.-..     .+..+..+-...|...+..         .|...      +.+..+.         
T Consensus       167 LR~npdsp~Lw~eyfrmEL~-----~~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~  241 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEYFRMELM-----YAEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKF  241 (568)
T ss_pred             hhcCCCChHHHHHHHHHHHH-----HHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHH
Confidence             444543 344333222110     0111111111111000000         00000      0000000         


Q ss_pred             CCHhH-HHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144          235 SGVGQ-AMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERL  313 (580)
Q Consensus       235 g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  313 (580)
                      ....+ -..+.+.+... .+.++.+|..+..-            .++-..+....+    ....-.+.......+....+
T Consensus       242 d~~kel~k~i~d~~~~~-~~~np~~~~~laqr------------~l~i~~~tdl~~----~~~~~~~~~~~~k~s~~~~v  304 (568)
T KOG2396|consen  242 DFLKELQKNIIDDLQSK-APDNPLLWDDLAQR------------ELEILSQTDLQH----TDNQAKAVEVGSKESRCCAV  304 (568)
T ss_pred             HHHHHHHHHHHHHHhcc-CCCCCccHHHHHHH------------HHHHHHHhhccc----hhhhhhchhcchhHHHHHHH
Confidence            00000 00011111111 12233333322221            111111000000    00000011111112223356


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHHHhcC------CHHHHHHHHHHhhhCC-CC-CCHhhHHHHHHHHHhcCC-HHHHHHHH
Q 043144          314 LAEMVLKGCSPSVVTFNILINFLCRKG------LLGRAIDILEKMPKHG-CT-PNSLSYNPVLHGFCKEKK-MDRAIEYL  384 (580)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~-~~~A~~~~  384 (580)
                      |++..+.  -++...|+..|..|....      .+.....+++...+.+ .. .....|..+.-.+..... .+-|..+.
T Consensus       305 ~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~  382 (568)
T KOG2396|consen  305 YEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLT  382 (568)
T ss_pred             HHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhh
Confidence            6665543  345556666666554422      2334444454443321 11 133445555555555444 22333333


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcC-ChHHH-HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHH-H-HHHHHHHH
Q 043144          385 EIMVSRGCYPDIVTYNTLLTALCKDG-KVDVA-VEILNQLSNKHCSPVLITYNTVIDGLSKVGK-TEQA-M-KLLEEMRT  459 (580)
Q Consensus       385 ~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A-~-~~~~~m~~  459 (580)
                      ..    ++..+...|..-+....+.. +++-- .+.|..+...-..+....|+...     .|+ ++.. . .++.....
T Consensus       383 ~e----~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s  453 (568)
T KOG2396|consen  383 TE----LFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLS  453 (568)
T ss_pred             HH----HhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHH
Confidence            22    23345555555444444221 22111 12222233222223334444433     122 1111 1 12222222


Q ss_pred             CCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCH
Q 043144          460 KGLKPDTITY-SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC--KARQTYRAIDILADMVTRSCKPTE  536 (580)
Q Consensus       460 ~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~  536 (580)
                      . ..|+..++ +.++..+.+.|-+.+|...+..+... ++|+...|..++..-.  .+.+..-++++++.|... +..|+
T Consensus       454 ~-~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~  530 (568)
T KOG2396|consen  454 V-IGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADS  530 (568)
T ss_pred             h-cCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCCh
Confidence            2 24555544 56777788888899999999998876 4567888887775432  233477788899988865 33788


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          537 ATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..|.....-=...|..+.+-.++.++.+
T Consensus       531 ~lw~~y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  531 DLWMDYMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             HHHHHHHHhhccCCCcccccHHHHHHHH
Confidence            8888877766788888888887776654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.60  E-value=1  Score=36.70  Aligned_cols=45  Identities=22%  Similarity=0.189  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKV  132 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  132 (580)
                      ...++..+...+.+.....+++.++..+ +.+....+.++..|++.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence            3445555555555555555555555543 24444555555555543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.56  E-value=2  Score=41.96  Aligned_cols=58  Identities=22%  Similarity=0.225  Sum_probs=29.5

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLERLGVR-PNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      .+..++.+.|+.++|.+.++++.+..+. .+..+...|+.++...+.+.++..++.+.-
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            3444555555556666655555432221 123344455555555556666555555543

The molecular function of this protein is uncertain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.55  E-value=0.037  Score=34.33  Aligned_cols=38  Identities=18%  Similarity=0.309  Sum_probs=19.2

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144          122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVL  160 (580)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  160 (580)
                      +..+...|...|++++|.++|+++++.. |.|+..|..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L   41 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence            4445555555555555555555555544 3444444433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.52  E-value=0.5  Score=43.74  Aligned_cols=225  Identities=12%  Similarity=0.075  Sum_probs=123.0

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCC-CCC-hhhHHHHHHHHHhcCChHHHHHHH----HHHHhCC-CCCCHHHHHHHHHHHH
Q 043144           93 RLVRNGELEEGFKFLESMVYHGD-IPD-IIPCTSLIRGFCKVGKTRKATRVM----EIVEDSG-AVPDVITYNVLISGYC  165 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~-~~~~~~~~~~l~~~~~  165 (580)
                      .+..+.+.+.|+..+.+.+.+-. ..+ ..++..+..+....|.+++++..-    +...+.. -..-...|..+..++.
T Consensus        15 ~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e   94 (518)
T KOG1941|consen   15 QLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNE   94 (518)
T ss_pred             hHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888877766521 111 235566777778888887766432    2222211 0112334555666666


Q ss_pred             hcCChhHHHHHHHHc-C---CCC--C-cchHHHHHHHHHhcCChhHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHh
Q 043144          166 RLGEIDNALQVLERM-S---VAP--D-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKE-----CYPDVITYTILIEATCK  233 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-~---~~~--~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~li~~~~~  233 (580)
                      +.-++.+++.+-..- +   ..|  + -...-.+..++.-.+.++++++.|+.+.+.-     .......+-.|...|.+
T Consensus        95 ~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~  174 (518)
T KOG1941|consen   95 KLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ  174 (518)
T ss_pred             HHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH
Confidence            666666776665443 1   111  1 1234456677777778888888888776531     11223466777777888


Q ss_pred             cCCHhHHHHHHHHHHHc----CCCCCHh-HH-----HHHHHHHHhcCCHHHHHHHHHHhhh----CCCCC-CHHHHHHHH
Q 043144          234 ESGVGQAMKLLDEMRNK----GCIPDVV-TY-----NVLVNGICKEGRLDEAIKFLNDMPS----YGCQP-NVITHNIIL  298 (580)
Q Consensus       234 ~g~~~~A~~~~~~~~~~----~~~~~~~-~~-----~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~-~~~~~~~ll  298 (580)
                      ..++++|.-......+.    ++. |.. -|     ..|.-++...|....|.+.-++..+    .|-.+ -......+.
T Consensus       175 l~D~~Kal~f~~kA~~lv~s~~l~-d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~a  253 (518)
T KOG1941|consen  175 LKDYEKALFFPCKAAELVNSYGLK-DWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFA  253 (518)
T ss_pred             HHhhhHHhhhhHhHHHHHHhcCcC-chhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence            88888777665554332    211 211 11     2233455566776666666665432    22111 122333455


Q ss_pred             HHHHhcCChHHHHHHHHHHH
Q 043144          299 RSMCSTGRWMDAERLLAEMV  318 (580)
Q Consensus       299 ~~~~~~~~~~~a~~~~~~~~  318 (580)
                      +.|...|+.+.|..-|+++.
T Consensus       254 DIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  254 DIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHhcccHhHHHHHHHHHH
Confidence            55666777777666665543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.51  E-value=1.7  Score=38.68  Aligned_cols=56  Identities=11%  Similarity=0.105  Sum_probs=28.1

Q ss_pred             HHHhcCChHHHHHHHHHHHHcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          300 SMCSTGRWMDAERLLAEMVLKG--CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH  355 (580)
Q Consensus       300 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  355 (580)
                      .-.+.|++++|.+.|+.+....  -+-...+...++.++.+.++++.|+..+++....
T Consensus        43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l  100 (254)
T COG4105          43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL  100 (254)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            3345555666666655555431  1112233444455555566666666655555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.51  E-value=0.19  Score=44.80  Aligned_cols=87  Identities=16%  Similarity=0.116  Sum_probs=47.1

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhc
Q 043144           93 RLVRNGELEEGFKFLESMVYHGDIPD---IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA--VPDVITYNVLISGYCRL  167 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~  167 (580)
                      .+.+.|++.+|..-|..-++. .|.+   ...+..|..++..+|+++.|..+|..+.+.-+  +.-+..+.-|+.+..+.
T Consensus       150 ~~~ksgdy~~A~~~F~~fi~~-YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l  228 (262)
T COG1729         150 DLYKSGDYAEAEQAFQAFIKK-YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRL  228 (262)
T ss_pred             HHHHcCCHHHHHHHHHHHHHc-CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHh
Confidence            344555566666666666554 2211   23445566666666666666666666655321  12234455555555566


Q ss_pred             CChhHHHHHHHHc
Q 043144          168 GEIDNALQVLERM  180 (580)
Q Consensus       168 g~~~~A~~~~~~~  180 (580)
                      |+.++|...|+++
T Consensus       229 ~~~d~A~atl~qv  241 (262)
T COG1729         229 GNTDEACATLQQV  241 (262)
T ss_pred             cCHHHHHHHHHHH
Confidence            6666666666655

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.48  E-value=3.7  Score=42.42  Aligned_cols=177  Identities=15%  Similarity=0.088  Sum_probs=94.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHH-----HHhcCChHHHHHHHHHHHh-------CCCCCCHHHHHHHHHHHHh
Q 043144           99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRG-----FCKVGKTRKATRVMEIVED-------SGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~  166 (580)
                      +..+|.++++.....|   +......+..+     +....|.+.|..+|+.+.+       .+   .+.....++.+|.+
T Consensus       227 ~~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~  300 (552)
T KOG1550|consen  227 ELSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQ  300 (552)
T ss_pred             hhhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhc
Confidence            3567888888877765   33333333322     3455688888888888766       44   33355567777766


Q ss_pred             cC-----ChhHHHHHHHHcCCCCCcchHHHHHHHHHhc---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----c
Q 043144          167 LG-----EIDNALQVLERMSVAPDVVTYNTILRTLCDS---GKLNLAMEVLHKQLEKECYPDVITYTILIEATCK----E  234 (580)
Q Consensus       167 ~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~  234 (580)
                      ..     +.+.|+.++.+.....++..-..++..+...   .+...|.++|..+.+.|   ....+..+..+|..    .
T Consensus       301 g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G---~~~A~~~la~~y~~G~gv~  377 (552)
T KOG1550|consen  301 GLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG---HILAIYRLALCYELGLGVE  377 (552)
T ss_pred             CCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC---ChHHHHHHHHHHHhCCCcC
Confidence            33     4566777777762223333333444444332   24567777777777766   33333333333322    3


Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG  286 (580)
Q Consensus       235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  286 (580)
                      .+...|..++....+.| .|....-...+..+.. +.++.+.-.+..+.+.+
T Consensus       378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            45667777777776665 2111111112222222 55555555555554433

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.33  E-value=4.5  Score=42.51  Aligned_cols=191  Identities=16%  Similarity=0.080  Sum_probs=95.0

Q ss_pred             hcCCHHHHHHHHHHHHHCCC-CCC-------HHHHHHHHHHHHhcCChHHHHHHHH--------HHHhCCCCCCHHHHHH
Q 043144          373 KEKKMDRAIEYLEIMVSRGC-YPD-------IVTYNTLLTALCKDGKVDVAVEILN--------QLSNKHCSPVLITYNT  436 (580)
Q Consensus       373 ~~~~~~~A~~~~~~~~~~~~-~~~-------~~~~~~li~~~~~~g~~~~A~~~~~--------~~~~~~~~~~~~~~~~  436 (580)
                      -.+++..|....+.+..... .|+       +..+....-.+...|+.+.|...|.        .....+...+...+..
T Consensus       373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~  452 (608)
T PF10345_consen  373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA  452 (608)
T ss_pred             HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence            46889899999888875321 111       2222233333556799999999997        3444443333333322


Q ss_pred             H--HHHHHhCC--CHHH--HHHHHHHHHHC-CCCC--CHHHHHHHH-HHHHhCC--CHHHHHHHHHHHHh-C--CCCCC-
Q 043144          437 V--IDGLSKVG--KTEQ--AMKLLEEMRTK-GLKP--DTITYSSLV-GGLSREG--KVDEAIKLFHDLER-L--GVRPN-  500 (580)
Q Consensus       437 l--~~~~~~~g--~~~~--A~~~~~~m~~~-~~~p--~~~~~~~l~-~~~~~~g--~~~~A~~~~~~~~~-~--~~~~~-  500 (580)
                      +  +..+...+  ..++  +..+++.+... .-.|  +..++..++ .++....  ...++...+.+..+ .  ....+ 
T Consensus       453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~  532 (608)
T PF10345_consen  453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ  532 (608)
T ss_pred             HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence            1  22222222  2223  66777665432 1122  333344443 3332211  12244444444321 1  11111 


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C--CHHHHHH-----HHHHHHhcCCHHHHHHHHHHHHh
Q 043144          501 --VITYNSIMLGLCKARQTYRAIDILADMVTRSCK-P--TEATYTI-----LIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       501 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~--~~~~~~~-----l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                        ..+++.+...+. .|+..+..+.........-. |  ....|..     +.+.+...|+.++|.....+...
T Consensus       533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~  605 (608)
T PF10345_consen  533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR  605 (608)
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence              122333333333 68887766665554322111 2  4556644     34457788999999998887654

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.23  E-value=0.55  Score=37.63  Aligned_cols=76  Identities=20%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGCYP--DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS  442 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  442 (580)
                      -.....+.|++++|.+.|+.+..+-+..  ...+-..++.+|.+.+++++|...++++.+.++.....-|-..+.+++
T Consensus        16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            3344455677777777777766542221  123455666667777777777777777766653322233444444433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.22  E-value=2  Score=37.73  Aligned_cols=204  Identities=11%  Similarity=-0.000  Sum_probs=103.6

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..|-....+|.-..+++.|..-+..+..- ...+...|. ..      .-+++|.-+.+++.+.  +.-+..++.-...|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-AA------KayEqaamLake~~kl--sEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-AA------KAYEQAAMLAKELSKL--SEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-HH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence            35555666777788888888877777532 222222222 12      2345556666666543  22334556667788


Q ss_pred             HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---C--CCCChhhHHHHHHHHHhcCCHhH
Q 043144          165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK---E--CYPDVITYTILIEATCKESGVGQ  239 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~li~~~~~~g~~~~  239 (580)
                      ..+|.++.|-..+++...             ....-++++|+++|.+....   +  ...-...+..+...+.+...+++
T Consensus       102 ~E~GspdtAAmaleKAak-------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E  168 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAK-------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE  168 (308)
T ss_pred             HHhCCcchHHHHHHHHHH-------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence            888888888777776610             11223445555555544321   0  00011223344455666666666


Q ss_pred             HHHHHHHHHHc----CCCCC-HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC---CCCCHHHHHHHHHHHHhcCChHHHH
Q 043144          240 AMKLLDEMRNK----GCIPD-VVTYNVLVNGICKEGRLDEAIKFLNDMPSYG---CQPNVITHNIILRSMCSTGRWMDAE  311 (580)
Q Consensus       240 A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~  311 (580)
                      |-..+..-...    .--++ -..|-..|-.|....++..|...++.--+.+   -..+..+...|+.+| ..|+.+++.
T Consensus       169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~  247 (308)
T KOG1585|consen  169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK  247 (308)
T ss_pred             HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence            65544432211    00111 1234445555566667777777777643321   123344555555544 445554444


Q ss_pred             H
Q 043144          312 R  312 (580)
Q Consensus       312 ~  312 (580)
                      .
T Consensus       248 k  248 (308)
T KOG1585|consen  248 K  248 (308)
T ss_pred             H
Confidence            3

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.17  E-value=0.37  Score=38.62  Aligned_cols=83  Identities=16%  Similarity=0.129  Sum_probs=58.6

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLI  161 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  161 (580)
                      ..+-.-.....+.|++.+|++.|+.+..+ .|.   .......++.+|.+.|++++|...+++.++..+..-..-|-..+
T Consensus        11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   11 QELYQEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            34555667788889999999999998877 222   23456678888999999999999999998877433333455555


Q ss_pred             HHHHhcC
Q 043144          162 SGYCRLG  168 (580)
Q Consensus       162 ~~~~~~g  168 (580)
                      .+++...
T Consensus        90 ~gL~~~~   96 (142)
T PF13512_consen   90 RGLSYYE   96 (142)
T ss_pred             HHHHHHH
Confidence            5544433

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.02  E-value=2  Score=36.88  Aligned_cols=181  Identities=15%  Similarity=0.070  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144          340 GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL  419 (580)
Q Consensus       340 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  419 (580)
                      |-+.-|.-=|.+.+...++ -+.+||.+.-.+...|+++.|.+.|+...+.++.-+....|.-|. +.-.|++.-|.+-|
T Consensus        79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~d~  156 (297)
T COG4785          79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQDDL  156 (297)
T ss_pred             hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHHHH
Confidence            4444444444444443222 456778787778888888888888888877654433334444333 33457788887777


Q ss_pred             HHHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          420 NQLSNKHC-SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       420 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      ...-+.+. .|-...|..+..   ..-++.+|..-+.+--+   ..|..-|...+-.+.- |.+. ...+++++.... .
T Consensus       157 ~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a-~  227 (297)
T COG4785         157 LAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADA-T  227 (297)
T ss_pred             HHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhc-c
Confidence            66665541 232333433332   23455566544433221   2244445444333321 2211 123333333211 1


Q ss_pred             CC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144          499 PN-------VITYNSIMLGLCKARQTYRAIDILADMVTRS  531 (580)
Q Consensus       499 ~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  531 (580)
                      .+       ..+|-.|..-+...|+.++|..+|+-.+..+
T Consensus       228 ~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         228 DNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            12       3467777888888888888888888877553

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.99  E-value=0.23  Score=38.53  Aligned_cols=53  Identities=9%  Similarity=0.150  Sum_probs=24.3

Q ss_pred             HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144           94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVED  147 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  147 (580)
                      +...|+.+.|++.|.+++.. .|.....||.-..++.-+|+.++|+.=+++..+
T Consensus        53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            33444455555555444443 233344444444444444444444444444443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=94.92  E-value=2.1  Score=36.86  Aligned_cols=28  Identities=21%  Similarity=0.044  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144          292 ITHNIILRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~  319 (580)
                      .||--+..-+...|+.++|..+|+-...
T Consensus       238 EtyFYL~K~~l~~G~~~~A~~LfKLaia  265 (297)
T COG4785         238 ETYFYLGKYYLSLGDLDEATALFKLAVA  265 (297)
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            3444455555555555555555555443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.90  E-value=1.7  Score=35.34  Aligned_cols=128  Identities=9%  Similarity=0.093  Sum_probs=96.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcC
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSG  200 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g  200 (580)
                      ....++..+...+........++.+...+ +.++..++.++..|++.. .++.++.+..   ..+......+++.|.+.+
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---ccccCCHHHHHHHHHHcC
Confidence            34567777788889999999999999887 578889999999999764 4666677763   234556677888999999


Q ss_pred             ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc-CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 043144          201 KLNLAMEVLHKQLEKECYPDVITYTILIEATCKE-SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK  268 (580)
Q Consensus       201 ~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  268 (580)
                      -++++.-++.++-.         +...+..+... ++++.|.+.+...      .+...|..++..+..
T Consensus        84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~  137 (140)
T smart00299       84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALLD  137 (140)
T ss_pred             cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence            99999888877532         33344555554 8899999988762      267788888887764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.79  E-value=2.8  Score=37.29  Aligned_cols=222  Identities=18%  Similarity=0.112  Sum_probs=106.1

Q ss_pred             CCHHHHHHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCChhhHHHHHHHHHhcCCHHHHHH
Q 043144          270 GRLDEAIKFLNDMPSYGCQ-PNVITHNIILRSMCSTGRWMDAERLLAEMVLK-GCSPSVVTFNILINFLCRKGLLGRAID  347 (580)
Q Consensus       270 g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~  347 (580)
                      +....+...+......... .....+......+...+.+..+...+...... ........+......+...+++..+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4444444444444433211 02344455555555666666666655555431 112333444455555555555666666


Q ss_pred             HHHHhhhCCCCCCHhhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144          348 ILEKMPKHGCTPNSLSYNPVLH-GFCKEKKMDRAIEYLEIMVSRGC--YPDIVTYNTLLTALCKDGKVDVAVEILNQLSN  424 (580)
Q Consensus       348 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  424 (580)
                      .+.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+.+...+.....
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            666555542221 111222222 45566666666666666543211  01222333333334555566666666666555


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144          425 KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLER  494 (580)
Q Consensus       425 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  494 (580)
                      .........+..+...+...++++.|...+.......  |+ ...+..+...+...+..+++...+.....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD--PDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC--cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            4311124445555555556666666666666655432  22 23333333333345556666666665554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.62  E-value=1.7  Score=34.05  Aligned_cols=64  Identities=16%  Similarity=0.194  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      .....+..+..+|+-+.--+++.++.+.+ .+++.....++.+|.+.|+..++.++++++-++|+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            33444455556666666656666655432 55666666666666666666666666666666664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.52  E-value=4.6  Score=39.64  Aligned_cols=54  Identities=13%  Similarity=0.161  Sum_probs=23.8

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLK-PDTITYSSLVGGLSREGKVDEAIKLFHDL  492 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  492 (580)
                      .++-+.|+.++|.+.+.+|.+.... .+..+...|+.++...+.+.++..++.+.
T Consensus       267 mCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  267 MCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3333445555555555555432111 11223344455555555555555555544

The molecular function of this protein is uncertain.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.36  E-value=2.4  Score=34.80  Aligned_cols=62  Identities=23%  Similarity=0.304  Sum_probs=39.9

Q ss_pred             HHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144          433 TYNTVIDGL---SKVGKTEQAMKLLEEMRTKGLKPDTITYS-SLVGGLSREGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       433 ~~~~l~~~~---~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~  496 (580)
                      +.+.|+...   .+.++.+++..++..+.-.  +|...... .-...+...|++.+|.++|+++.+..
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~   74 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA   74 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC
Confidence            344444443   3677888888888888754  45443332 22345678888888888888876543

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.21  E-value=10  Score=41.41  Aligned_cols=24  Identities=17%  Similarity=0.279  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHH
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESM  110 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~  110 (580)
                      ....++.+++.+++.+|+.+.++-
T Consensus       680 VLa~vr~~l~~~~y~~AF~~~Rkh  703 (1265)
T KOG1920|consen  680 VLAKVRTLLDRLRYKEAFEVMRKH  703 (1265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355566777777777777666553

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.15  E-value=0.61  Score=42.39  Aligned_cols=79  Identities=16%  Similarity=0.148  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHH
Q 043144          466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT-----RSCKPTEATYT  540 (580)
Q Consensus       466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~  540 (580)
                      ..++..++..+...|+++.+...++++....+. +...|..++.+|.+.|+...|+..|+++.+     .|+.|.+.+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            445677788888888888888888888877654 777888888888888888888888887764     37777777777


Q ss_pred             HHHHH
Q 043144          541 ILIEG  545 (580)
Q Consensus       541 ~l~~~  545 (580)
                      .+..+
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            66665

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=94.11  E-value=0.067  Score=30.87  Aligned_cols=21  Identities=19%  Similarity=0.101  Sum_probs=10.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHH
Q 043144          500 NVITYNSIMLGLCKARQTYRA  520 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~~~~A  520 (580)
                      +...|..+...|...|++++|
T Consensus        12 n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   12 NAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             CHHHHHHHHHHHHHCcCHHhh
Confidence            444444444444445544444

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.91  E-value=0.83  Score=41.55  Aligned_cols=79  Identities=18%  Similarity=0.282  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER-----LGVRPNVITYN  505 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~  505 (580)
                      ..++..++..+...|+++.+...++++.... +-+...|..++.+|.+.|+...|+..|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            5667788888889999999999999998875 55788899999999999999999999988754     57777776665


Q ss_pred             HHHHH
Q 043144          506 SIMLG  510 (580)
Q Consensus       506 ~l~~~  510 (580)
                      .....
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            54443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.72  E-value=5.8  Score=36.80  Aligned_cols=121  Identities=17%  Similarity=0.180  Sum_probs=62.2

Q ss_pred             HHcCChHHHHHHHHHHHhCC--CCCCh-----hhHHHHHHHHHhcC-ChHHHHHHHHHHHhC----C----CCCCH----
Q 043144           95 VRNGELEEGFKFLESMVYHG--DIPDI-----IPCTSLIRGFCKVG-KTRKATRVMEIVEDS----G----AVPDV----  154 (580)
Q Consensus        95 ~~~g~~~~A~~~~~~~~~~~--~~~~~-----~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~----~----~~~~~----  154 (580)
                      .++|+++-|..++.++....  ..|+.     ..+...+....+.+ +++.|..++++..+.    +    ..++.    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr   83 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR   83 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence            46788888888888775532  12221     11222333344555 777777776654432    1    11222    


Q ss_pred             -HHHHHHHHHHHhcCChh---HHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144          155 -ITYNVLISGYCRLGEID---NALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       155 -~~~~~l~~~~~~~g~~~---~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  215 (580)
                       .+...++.+|...+..+   +|..+++.+  ..+..+.++..-+.++.+.++.+.+.+++.+|+..
T Consensus        84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence             24445566666655543   344444444  22222344444555555566666666666666654

It is also involved in sporulation [].

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=93.70  E-value=0.078  Score=30.60  Aligned_cols=24  Identities=25%  Similarity=0.404  Sum_probs=12.6

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHH
Q 043144          151 VPDVITYNVLISGYCRLGEIDNAL  174 (580)
Q Consensus       151 ~~~~~~~~~l~~~~~~~g~~~~A~  174 (580)
                      |.++..|+.++..|...|++++|+
T Consensus        10 P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   10 PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            445555555555555555555543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.66  E-value=0.17  Score=29.61  Aligned_cols=26  Identities=15%  Similarity=0.054  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          538 TYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       538 ~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      +|..|+.+|.+.|++++|.+++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667777777777777777777744

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.42  E-value=3.9  Score=33.87  Aligned_cols=123  Identities=15%  Similarity=0.138  Sum_probs=55.7

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH-HHHH--HHHHHHhCCCH
Q 043144          407 CKDGKVDVAVEILNQLSNKHCSPVL-ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTI-TYSS--LVGGLSREGKV  482 (580)
Q Consensus       407 ~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~--l~~~~~~~g~~  482 (580)
                      .+.+..++|+.-|..+.+.+...-+ ....-........|+...|...|++.-.....|-.. -...  -...+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            3445556666666666655422111 111122233445566666666666654432222211 0111  11233455556


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      +....-.+-+...+-.-....-..|..+-.+.|++..|...|+.+..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            55555555443222111223334555555566666666666655553

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.28  E-value=1.2  Score=39.86  Aligned_cols=104  Identities=15%  Similarity=0.212  Sum_probs=59.6

Q ss_pred             CCHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 043144          429 PVLITYNTVIDGLSK-----VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVIT  503 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  503 (580)
                      -|..+|...+..+..     .+..+--...++.|.+.|+.-|..+|+.|+..+-+..-..  ..+               
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nv---------------  127 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNV---------------  127 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHH---------------
Confidence            445566666665542     3445555555666666676667777766666554433221  011               


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144          504 YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL  551 (580)
Q Consensus       504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  551 (580)
                      +......|-  .+-+=+++++++|...|+-||..+-..|+.++.+.|-
T Consensus       128 fQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  128 FQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            111111111  2234477788888888888888888888888866553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.26  E-value=12  Score=38.85  Aligned_cols=80  Identities=13%  Similarity=-0.015  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA----RQTYRAIDILADMVTRSCKPTEATYTILIEGIA----YEGLA  552 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~  552 (580)
                      +.+.+...+.+....|   +......|...|...    .+++.|...+......+    ......+...+.    ... +
T Consensus       454 ~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~-~  525 (552)
T KOG1550|consen  454 TLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKV-L  525 (552)
T ss_pred             chhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcch-h
Confidence            4555666666665544   444455555555443    35777777777776554    333333333221    122 5


Q ss_pred             HHHHHHHHHHHhCCCC
Q 043144          553 KEALDLLNQLCSRGVV  568 (580)
Q Consensus       553 ~~A~~~~~~~~~~g~~  568 (580)
                      ..|.+++++..+.+..
T Consensus       526 ~~a~~~~~~~~~~~~~  541 (552)
T KOG1550|consen  526 HLAKRYYDQASEEDSR  541 (552)
T ss_pred             HHHHHHHHHHHhcCch
Confidence            7777777777765543

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.08  E-value=0.25  Score=28.92  Aligned_cols=26  Identities=12%  Similarity=0.071  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      +|..|...|.+.|++++|++++++.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46788889999999999999998855

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.03  E-value=1.7  Score=36.92  Aligned_cols=60  Identities=17%  Similarity=0.159  Sum_probs=28.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT--ITYSSLVGGLSREGKVDEAIKLFHDL  492 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~  492 (580)
                      .+..+...|.+.|+.++|++.|.++.+....+..  ..+-.++......+++..+...+.++
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka   99 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA   99 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3444555555555555555555555544332221  23334444445555555555554444

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.93  E-value=1.8  Score=43.18  Aligned_cols=154  Identities=17%  Similarity=0.146  Sum_probs=105.2

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043144           93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDN  172 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  172 (580)
                      .+...|+++.|-.++....       ....+.++..+-++|-.++|+++-         +|+.-   -.....+.|+++.
T Consensus       595 t~vmrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~i  655 (794)
T KOG0276|consen  595 TLVLRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDI  655 (794)
T ss_pred             HHhhhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHH
Confidence            4455677777766544332       234566777788888888887663         22221   2334467889999


Q ss_pred             HHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC
Q 043144          173 ALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC  252 (580)
Q Consensus       173 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  252 (580)
                      |.++..+.   .+..-|..|..+..+.+++..|.+.|....+         |..|+-++...|+-+.-..+-....+.|.
T Consensus       656 A~~la~e~---~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~  723 (794)
T KOG0276|consen  656 AFDLAVEA---NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK  723 (794)
T ss_pred             HHHHHHhh---cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence            99888775   4567799999999999999999998877654         45667777777887766666666665542


Q ss_pred             CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          253 IPDVVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       253 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                            .|.-.-+|...|+++++++++.+-.
T Consensus       724 ------~N~AF~~~~l~g~~~~C~~lLi~t~  748 (794)
T KOG0276|consen  724 ------NNLAFLAYFLSGDYEECLELLISTQ  748 (794)
T ss_pred             ------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence                  2233345677899999988887653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=92.87  E-value=3.8  Score=32.21  Aligned_cols=135  Identities=16%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcch---HHHHHHHHHhcCChhHHH
Q 043144          130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVT---YNTILRTLCDSGKLNLAM  206 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~  206 (580)
                      .-.|..++..++..+...+.   +..-+|-+|.-....-+-+-..++++.+|---|...   ...++..|++.|...   
T Consensus        13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~s---   86 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLS---   86 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT------
T ss_pred             HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchH---
Confidence            44566777777777766543   344444444444444444555555555532233222   223444444433222   


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          207 EVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG  286 (580)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  286 (580)
                                     ......+......|+-++-.+++..+.+. -.+++...-.+..+|.+.|+..++.+++.+.-+.|
T Consensus        87 ---------------e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG  150 (161)
T PF09205_consen   87 ---------------EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKG  150 (161)
T ss_dssp             ---------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred             ---------------HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence                           22223344455556666666666655432 13455555566666666666666666666665554

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.79  E-value=14  Score=38.50  Aligned_cols=170  Identities=10%  Similarity=0.153  Sum_probs=99.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      -.-++.+.+.+.+++|+...+.....  .|   -...+...+..+.-.|++++|....-.|..    .+...|..-+..+
T Consensus       360 ~Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f  433 (846)
T KOG2066|consen  360 EDHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKF  433 (846)
T ss_pred             chhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHh
Confidence            34678899999999999887765432  22   234677888889999999999999888874    3566777777777


Q ss_pred             HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      ...++......++=.-+..-+...|..++..+.. .+.    .-|.+.++. .  +...|..+.-.-.       ..   
T Consensus       434 ~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~----~~F~e~i~~-W--p~~Lys~l~iisa-------~~---  495 (846)
T KOG2066|consen  434 AELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV----KGFLELIKE-W--PGHLYSVLTIISA-------TE---  495 (846)
T ss_pred             ccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH----HHHHHHHHh-C--ChhhhhhhHHHhh-------cc---
Confidence            6666654433322111111245567777777766 222    223333332 1  2222322211100       01   


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      .+..+. .. +...-..|+..|...++++.|+.++-.+.
T Consensus       496 ~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~~ylklk  532 (846)
T KOG2066|consen  496 PQIKQN-SE-STALLEVLAHLYLYDNKYEKALPIYLKLQ  532 (846)
T ss_pred             hHHHhh-cc-chhHHHHHHHHHHHccChHHHHHHHHhcc
Confidence            111111 01 22233348888888888888888887766

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.78  E-value=9.8  Score=36.73  Aligned_cols=65  Identities=14%  Similarity=0.091  Sum_probs=36.7

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP---NVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      ...+|..++..+.+.|+++.|...+..+...+..+   .+.....-+......|+..+|+..+++.++
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34456666666667777777776666665433111   223333444555566666666666666554

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=92.69  E-value=15  Score=38.66  Aligned_cols=425  Identities=15%  Similarity=0.123  Sum_probs=204.0

Q ss_pred             HHHHHHHHHHh-CCCCCC--hhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCCHH-----HHHHHHHHHHhcCChhH
Q 043144          102 EGFKFLESMVY-HGDIPD--IIPCTSLIRGFC-KVGKTRKATRVMEIVEDSGAVPDVI-----TYNVLISGYCRLGEIDN  172 (580)
Q Consensus       102 ~A~~~~~~~~~-~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~  172 (580)
                      -|++-++.+.+ ...+|.  ..++..++..+. ...+++.|...+++....--.++..     ....++..+.+.+... 
T Consensus        39 ~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-  117 (608)
T PF10345_consen   39 TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-  117 (608)
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-
Confidence            45555555553 233332  345666666665 6677888888888765432122211     2234556666665544 


Q ss_pred             HHHHHHHc-----CCCCC--cchHHHH-HHHHHhcCChhHHHHHHHHHHhCC---CCCChhhHHHHHHHHH--hcCCHhH
Q 043144          173 ALQVLERM-----SVAPD--VVTYNTI-LRTLCDSGKLNLAMEVLHKQLEKE---CYPDVITYTILIEATC--KESGVGQ  239 (580)
Q Consensus       173 A~~~~~~~-----~~~~~--~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~--~~g~~~~  239 (580)
                      |+...++.     ..+..  ...+..+ +..+...+++..|.+.++.+...-   ..|....+..++.+..  +.+..++
T Consensus       118 a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d  197 (608)
T PF10345_consen  118 ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDD  197 (608)
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchh
Confidence            77777665     11111  1222233 222333468888888887776532   2233444444444433  4555666


Q ss_pred             HHHHHHHHHHcC---------CCCCHhHHHHHHHHH--HhcCCHHHHHHHHHHhhh-------CC----------CC---
Q 043144          240 AMKLLDEMRNKG---------CIPDVVTYNVLVNGI--CKEGRLDEAIKFLNDMPS-------YG----------CQ---  288 (580)
Q Consensus       240 A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~-------~~----------~~---  288 (580)
                      +.+..+.+....         ..|...+|..+++.+  ...|+++.+...++++.+       ..          ++   
T Consensus       198 ~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~  277 (608)
T PF10345_consen  198 VLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNI  277 (608)
T ss_pred             HHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeec
Confidence            666666653321         123455666666644  456776666655554321       10          00   


Q ss_pred             ----------CCHHH---------HHHHHHH--HHhcCChHHHHHHHHHHHHc--------CCCCC--------hhhHHH
Q 043144          289 ----------PNVIT---------HNIILRS--MCSTGRWMDAERLLAEMVLK--------GCSPS--------VVTFNI  331 (580)
Q Consensus       289 ----------~~~~~---------~~~ll~~--~~~~~~~~~a~~~~~~~~~~--------~~~~~--------~~~~~~  331 (580)
                                +....         ..-++.+  .+..+..++|.+++++..+.        ...++        ...|..
T Consensus       278 ~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~  357 (608)
T PF10345_consen  278 GEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLR  357 (608)
T ss_pred             ccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHH
Confidence                      11111         1111222  22334444555555444321        11111        112222


Q ss_pred             HHHH---------HHhcCCHHHHHHHHHHhhhCCC-CCC-------HhhHHHHHHHHHhcCCHHHHHHHHH--------H
Q 043144          332 LINF---------LCRKGLLGRAIDILEKMPKHGC-TPN-------SLSYNPVLHGFCKEKKMDRAIEYLE--------I  386 (580)
Q Consensus       332 l~~~---------~~~~g~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~--------~  386 (580)
                      .+..         .+-.+++..+...++.+.+... .|+       +..+....-.+...|+.+.|...|.        .
T Consensus       358 ~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~  437 (608)
T PF10345_consen  358 YLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEA  437 (608)
T ss_pred             HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhh
Confidence            2222         2347889999999988876421 111       2222222333445799999999997        4


Q ss_pred             HHHCCCCCCHHHHHHH--HHHHHhcC--ChHH--HHHHHHHHHhCC-CCC--CHHHHHHH-HHHHHhCC--CHHHHHHHH
Q 043144          387 MVSRGCYPDIVTYNTL--LTALCKDG--KVDV--AVEILNQLSNKH-CSP--VLITYNTV-IDGLSKVG--KTEQAMKLL  454 (580)
Q Consensus       387 ~~~~~~~~~~~~~~~l--i~~~~~~g--~~~~--A~~~~~~~~~~~-~~~--~~~~~~~l-~~~~~~~g--~~~~A~~~~  454 (580)
                      ....+...+..++..+  +..+...+  +.++  +..+++.+.... -.|  +..++..+ +.++....  ...++...+
T Consensus       438 ~~~~~~~~El~ila~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l  517 (608)
T PF10345_consen  438 ANRKSKFRELYILAALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHL  517 (608)
T ss_pred             hccCCcchHHHHHHHHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHH
Confidence            4445444444444332  22222222  2333  777777765431 122  23334443 33333211  123444444


Q ss_pred             HHHHH-----CCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CCCCHHHHH-----HHHHHHHhcCCHHHH
Q 043144          455 EEMRT-----KGL-KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG---VRPNVITYN-----SIMLGLCKARQTYRA  520 (580)
Q Consensus       455 ~~m~~-----~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~-----~l~~~~~~~g~~~~A  520 (580)
                      .+..+     .+. .--..+++.+...+. .|+..+............   ++-....|.     .+...+...|+.++|
T Consensus       518 ~~~L~~~~~~~~n~~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka  596 (608)
T PF10345_consen  518 QEALKMANNKLGNSQLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKA  596 (608)
T ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            33222     110 111222333333334 788777666555543211   121344552     344557788999999


Q ss_pred             HHHHHHHH
Q 043144          521 IDILADMV  528 (580)
Q Consensus       521 ~~~~~~~~  528 (580)
                      .....+..
T Consensus       597 ~~~~~~~~  604 (608)
T PF10345_consen  597 EEARQQLD  604 (608)
T ss_pred             HHHHHHHH
Confidence            88877664

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.60  E-value=1.3  Score=39.69  Aligned_cols=116  Identities=21%  Similarity=0.221  Sum_probs=74.6

Q ss_pred             HHHHHHHhhhCCCCCCHhhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144          345 AIDILEKMPKHGCTPNSLSYNPVLHGFCK-----EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL  419 (580)
Q Consensus       345 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  419 (580)
                      ..+.|..+.-  -+.|..+|-.++..+..     .+.++-....++.|.+-|+.-|..+|+.|+..+-+..-        
T Consensus        53 ~e~~F~aa~~--~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf--------  122 (406)
T KOG3941|consen   53 VEKQFEAAEP--EKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF--------  122 (406)
T ss_pred             hhhhhhccCc--ccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc--------
Confidence            3444544432  23477788888877764     35577777778888888888899999988887654321        


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043144          420 NQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK  481 (580)
Q Consensus       420 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  481 (580)
                              .|. ..+....-.|-  .+-+-+++++++|...|+.||.++-..|+.++.+.+.
T Consensus       123 --------iP~-nvfQ~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  123 --------IPQ-NVFQKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             --------ccH-HHHHHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence                    121 11112221221  2234577888888888888888888888888877665

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.52  E-value=2.8  Score=35.54  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=67.7

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKPD----TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA  514 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  514 (580)
                      .-+...|++++|..-|...++......    ...|..-..++.+.+.++.|+.-..+.++.++. .......-+.+|.+.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~  181 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM  181 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence            346678999999999999888753222    234455556778888999999988888887654 444555556788888


Q ss_pred             CCHHHHHHHHHHHHHc
Q 043144          515 RQTYRAIDILADMVTR  530 (580)
Q Consensus       515 g~~~~A~~~~~~~~~~  530 (580)
                      ..+++|++-|+++++.
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            8899999999998876

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.46  E-value=12  Score=36.92  Aligned_cols=61  Identities=8%  Similarity=0.099  Sum_probs=26.4

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144          327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR  390 (580)
Q Consensus       327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  390 (580)
                      ....+++..+.....+.-...++.+|+..|  .+...+..++.+|... ..++-..+|+++.+.
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~  127 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY  127 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence            333444444444444444444444444432  1334444444444444 333444444444443

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.37  E-value=5.4  Score=32.80  Aligned_cols=18  Identities=22%  Similarity=0.232  Sum_probs=7.9

Q ss_pred             HHhcCChHHHHHHHHHHH
Q 043144          129 FCKVGKTRKATRVMEIVE  146 (580)
Q Consensus       129 ~~~~g~~~~A~~~~~~~~  146 (580)
                      +...|++.+|..+|+.+.
T Consensus        54 ~i~r~~w~dA~rlLr~l~   71 (160)
T PF09613_consen   54 HIVRGDWDDALRLLRELE   71 (160)
T ss_pred             HHHhCCHHHHHHHHHHHh
Confidence            344444444444444443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.31  E-value=0.37  Score=27.52  Aligned_cols=28  Identities=14%  Similarity=0.123  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          538 TYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      .|..++.++...|++++|++.+++.++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4555555666666666666666655543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK09687 putative lyase; Provisional

Probab=92.26  E-value=9.5  Score=35.34  Aligned_cols=58  Identities=14%  Similarity=0.032  Sum_probs=24.5

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVS  389 (580)
Q Consensus       325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  389 (580)
                      +..+-...+.++.+.++. .+...+-...+.+   +  .....+.++...|+. +|+..+..+..
T Consensus       205 ~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        205 NEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             ChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence            444444445555555542 3333333333321   1  123344445555553 35555555444

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.18  E-value=0.018  Score=47.35  Aligned_cols=85  Identities=13%  Similarity=0.136  Sum_probs=55.3

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      +++.+.+.+.+.....+++.+...+...+....+.++..|++.++.++..+.++...       ..-...++..+.+.|-
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcch
Confidence            356666677788888888888776655667777888888888877677776665211       1222345666666777


Q ss_pred             hhHHHHHHHHcC
Q 043144          170 IDNALQVLERMS  181 (580)
Q Consensus       170 ~~~A~~~~~~~~  181 (580)
                      +++|.-++.+++
T Consensus        86 ~~~a~~Ly~~~~   97 (143)
T PF00637_consen   86 YEEAVYLYSKLG   97 (143)
T ss_dssp             HHHHHHHHHCCT
T ss_pred             HHHHHHHHHHcc
Confidence            777777777663

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.11  E-value=2.4  Score=36.07  Aligned_cols=24  Identities=13%  Similarity=0.295  Sum_probs=10.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          366 PVLHGFCKEKKMDRAIEYLEIMVS  389 (580)
Q Consensus       366 ~l~~~~~~~~~~~~A~~~~~~~~~  389 (580)
                      .+...|.+.|+.+.|++.|.++.+
T Consensus        41 ~l~~~~~~~Gd~~~A~k~y~~~~~   64 (177)
T PF10602_consen   41 DLADHYCKIGDLEEALKAYSRARD   64 (177)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhh
Confidence            333444444444444444444433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.97  E-value=6.4  Score=32.69  Aligned_cols=122  Identities=16%  Similarity=0.163  Sum_probs=52.3

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhCCCHH
Q 043144          373 KEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI-TYNTV--IDGLSKVGKTE  448 (580)
Q Consensus       373 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~g~~~  448 (580)
                      +.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|... -..-+  .-.+...|.++
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~  149 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYD  149 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHH
Confidence            3444555555555555444332221 12222333445555555555555554443222211 00011  11223455555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER  494 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  494 (580)
                      ......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+..
T Consensus       150 dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         150 DVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5554444443322122222233444455566666666666666553

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=91.92  E-value=0.44  Score=27.27  Aligned_cols=28  Identities=21%  Similarity=0.108  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          538 TYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      +|..++.+|...|++++|...++++++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            4455555555555555555555555543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=91.74  E-value=6  Score=31.97  Aligned_cols=52  Identities=19%  Similarity=0.234  Sum_probs=30.2

Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144          443 KVGKTEQAMKLLEEMRTKGLKPDTITYS-SLVGGLSREGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~  496 (580)
                      ..++++++..+++.|.-.  .|+..-.. .-...+...|++.+|.++|+++.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHh--CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            466777777777776643  33322211 12334566777777777777776543

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=91.69  E-value=20  Score=37.73  Aligned_cols=222  Identities=14%  Similarity=0.193  Sum_probs=93.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh--
Q 043144          332 LINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC-YPDIVTYNTLLTALCK--  408 (580)
Q Consensus       332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~li~~~~~--  408 (580)
                      ....+.-.|+++.|++.+-+-.  +...+.+.+...+..|.-.+-.+...   ..++.... .|...-+..||..|.+  
T Consensus       264 Yf~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F  338 (613)
T PF04097_consen  264 YFQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF  338 (613)
T ss_dssp             HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred             HHHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence            3455667899999999887611  12224444444443332222111111   33322111 1222567788888876  


Q ss_pred             -cCChHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCCHHHHH-----------HHHHH---HHHCCCC-CCHH---H
Q 043144          409 -DGKVDVAVEILNQLSNKHCSPVLITYNTVI-DGLSKVGKTEQAM-----------KLLEE---MRTKGLK-PDTI---T  468 (580)
Q Consensus       409 -~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~A~-----------~~~~~---m~~~~~~-p~~~---~  468 (580)
                       ..+..+|.+++-.+.....+.....+..++ ......++++.-+           -++++   ++  ++. ++..   .
T Consensus       339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li--~~~~~~~~~~~i  416 (613)
T PF04097_consen  339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLI--KFDDDEDFLREI  416 (613)
T ss_dssp             TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGG--T-SSSSHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeecccccc--CCCCcHHHHHHH
Confidence             357888888887776644222222222222 2222233222111           01111   11  112 1222   2


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhcCC-----------HHHHHHHHHHHHHcC-----
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM-LGLCKARQ-----------TYRAIDILADMVTRS-----  531 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~-----------~~~A~~~~~~~~~~~-----  531 (580)
                      ....+.-+...|++++|..+|.-+.+.+  .-....+.++ .+......           ...|..+.+.....+     
T Consensus       417 ~~~~A~~~e~~g~~~dAi~Ly~La~~~d--~vl~lln~~Ls~~l~~~~~~~~~~s~~~~l~~la~~i~~~y~~~~~~~~~  494 (613)
T PF04097_consen  417 IEQAAREAEERGRFEDAILLYHLAEEYD--KVLSLLNRLLSQVLSQPSSSSLSDSERERLIELAKEILERYKSNPHISSK  494 (613)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHTT-HH--HHHHHHHHHHHHHHHCSSTSSSSSTTTTSHHHHHHHHHHHHTTSHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHcCccccccccchhhhHHHHHHHHHHHHHhCcchHhh
Confidence            2334455678888998888888764321  1122233222 23332222           333444444332211     


Q ss_pred             C-CCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHH
Q 043144          532 C-KPTEATYTILIEG-----IAYEGLAKEALDLLNQL  562 (580)
Q Consensus       532 ~-~~~~~~~~~l~~~-----~~~~g~~~~A~~~~~~~  562 (580)
                      + .....|+..|...     +.+.|++++|.+.++++
T Consensus       495 ~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L  531 (613)
T PF04097_consen  495 VSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEKL  531 (613)
T ss_dssp             S-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            1 1123455554433     47899999998776655

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.50  E-value=12  Score=34.94  Aligned_cols=91  Identities=18%  Similarity=0.251  Sum_probs=38.1

Q ss_pred             HHHHHHHHHhhhCCC---CCCHhhHHHHHHHHHhcCC----HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCC--
Q 043144          343 GRAIDILEKMPKHGC---TPNSLSYNPVLHGFCKEKK----MDRAIEYLEIMVSRGCYPDIV--TYNTLLTALCKDGK--  411 (580)
Q Consensus       343 ~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~--  411 (580)
                      .++..+|+.|.+..+   .++..++..++..  ..++    .+.+..+|+.+.+.|+..+..  ....++..+.....  
T Consensus       120 ~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~  197 (297)
T PF13170_consen  120 QRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEK  197 (297)
T ss_pred             HHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHH
Confidence            455566666665422   1233334444332  2222    234455555555555443322  22222222211111  


Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHH
Q 043144          412 VDVAVEILNQLSNKHCSPVLITYN  435 (580)
Q Consensus       412 ~~~A~~~~~~~~~~~~~~~~~~~~  435 (580)
                      ...+.++++.+.+.++++....|.
T Consensus       198 v~r~~~l~~~l~~~~~kik~~~yp  221 (297)
T PF13170_consen  198 VARVIELYNALKKNGVKIKYMHYP  221 (297)
T ss_pred             HHHHHHHHHHHHHcCCcccccccc
Confidence            234555555555555554444443

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.49  E-value=2.1  Score=42.71  Aligned_cols=150  Identities=17%  Similarity=0.099  Sum_probs=101.1

Q ss_pred             hcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144          166 RLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLD  245 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  245 (580)
                      -.|+++.|-.++..++    ....+.++..+.++|-.++|+++-         +|...   -.....+.|+++.|.++..
T Consensus       598 mrrd~~~a~~vLp~I~----k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~---rFelal~lgrl~iA~~la~  661 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIP----KEIRTKVAHFLESQGMKEQALELS---------TDPDQ---RFELALKLGRLDIAFDLAV  661 (794)
T ss_pred             hhccccccccccccCc----hhhhhhHHhHhhhccchHhhhhcC---------CChhh---hhhhhhhcCcHHHHHHHHH
Confidence            3567777776555442    344567778888888888887652         23221   1234457788888888776


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144          246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS  325 (580)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  325 (580)
                      +..      +..-|..|.++..+.|++..|.+.|.....         |..|+-.+...|+-+....+-....+.|.   
T Consensus       662 e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~---  723 (794)
T KOG0276|consen  662 EAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK---  723 (794)
T ss_pred             hhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc---
Confidence            653      567899999999999999999999887664         44566667777777665565555555542   


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          326 VVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                         .|...-+|...|+++++.+++..-
T Consensus       724 ---~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  724 ---NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             ---cchHHHHHHHcCCHHHHHHHHHhc
Confidence               222334566789999988887653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.36  E-value=21  Score=37.34  Aligned_cols=101  Identities=11%  Similarity=0.058  Sum_probs=52.3

Q ss_pred             HHHHHhcCChhHHHHHHHHc-CCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043144          161 ISGYCRLGEIDNALQVLERM-SVAPD---VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESG  236 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  236 (580)
                      ++.+.+.+.+++|+...+.. +..|.   ...+...|..+.-.|++++|-...-.|...    +..-|-..+..+...++
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~~~  438 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAELDQ  438 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccccc
Confidence            45556677777777777665 33332   234566666666677777776666665543    34444444444444443


Q ss_pred             HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh
Q 043144          237 VGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK  268 (580)
Q Consensus       237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  268 (580)
                      ......   -+.......+..+|..++..+..
T Consensus       439 l~~Ia~---~lPt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  439 LTDIAP---YLPTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cchhhc---cCCCCCcccCchHHHHHHHHHHH
Confidence            332221   11211112344556665555554

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=91.25  E-value=39  Score=40.37  Aligned_cols=320  Identities=12%  Similarity=0.064  Sum_probs=169.3

Q ss_pred             HHHHHHHhcCChhHHHHHHHHH----HhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 043144          191 TILRTLCDSGKLNLAMEVLHKQ----LEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGI  266 (580)
Q Consensus       191 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  266 (580)
                      .+..+-.+.+.+..|+..++.-    .+..  .....+..+...|...+++|...-+...-..     +...+. .|...
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~--~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~ 1459 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKE--TEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEH 1459 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhH--HHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHH
Confidence            5556777888899999988873    2211  1223344445588889999888877764211     233333 33445


Q ss_pred             HhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHH-HHHHHhcCCHHHH
Q 043144          267 CKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNIL-INFLCRKGLLGRA  345 (580)
Q Consensus       267 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a  345 (580)
                      ...|++..|...|+.+.+.+ ++...+++-++......+.+.......+..... ..+....++.+ ..+--+.++++..
T Consensus      1460 e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1460 EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred             HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence            67899999999999998875 445777887888888888888877766555443 12333333332 3334567777777


Q ss_pred             HHHHHHhhhCCCCCCHhhHHHH--HHHHHhcC--CHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHhcCCh
Q 043144          346 IDILEKMPKHGCTPNSLSYNPV--LHGFCKEK--KMDRAIEYLEIMVSR--------GCYPD-IVTYNTLLTALCKDGKV  412 (580)
Q Consensus       346 ~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~A~~~~~~~~~~--------~~~~~-~~~~~~li~~~~~~g~~  412 (580)
                      ...+.   ..    +..+|...  +..+.+..  |.-.-.+..+.+.+.        +..-+ ...|..++....-..-.
T Consensus      1538 e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el~ 1610 (2382)
T KOG0890|consen 1538 ESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLELE 1610 (2382)
T ss_pred             hhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHHH
Confidence            66655   22    33334333  22222222  211111222222211        01100 11233333322211111


Q ss_pred             HHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHCCCCC-----CHHHHHHHHHHHHhCCCHHHH
Q 043144          413 DVAVEILNQLS-NKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEE-MRTKGLKP-----DTITYSSLVGGLSREGKVDEA  485 (580)
Q Consensus       413 ~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-m~~~~~~p-----~~~~~~~l~~~~~~~g~~~~A  485 (580)
                      ... +.+.... ......+..-|..-+..-....+..+-+--+++ +......|     -..+|...++.....|.++.|
T Consensus      1611 ~~~-~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A 1689 (2382)
T KOG0890|consen 1611 NSI-EELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRA 1689 (2382)
T ss_pred             HHH-HHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHH
Confidence            111 0110000 001111122232222221111112222111221 11111122     246788888889999999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS  531 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  531 (580)
                      ...+-.+.+.+ .  +..+.-.+......|+...|+.++++.++.+
T Consensus      1690 ~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1690 QNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            99988887755 2  3345566777889999999999999988653

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=90.35  E-value=28  Score=37.12  Aligned_cols=228  Identities=14%  Similarity=0.083  Sum_probs=117.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHH-HHHhcCCHHHHHHHHHHhhhC----CCCCCHhhHHH
Q 043144          299 RSMCSTGRWMDAERLLAEMVLKGCSPSV-------VTFNILIN-FLCRKGLLGRAIDILEKMPKH----GCTPNSLSYNP  366 (580)
Q Consensus       299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~  366 (580)
                      .......++.+|..+..++...-..|+.       ..|+.|-. .....|+++.|.++.+.....    -..+....+..
T Consensus       423 W~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv  502 (894)
T COG2909         423 WLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSV  502 (894)
T ss_pred             HHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhh
Confidence            3455678889998888887654212211       13333322 233578888888887766553    22334556677


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH--HHHHhcCC--hHHHHHHHHHHHhCCC------CCCHHH
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVT---YNTLL--TALCKDGK--VDVAVEILNQLSNKHC------SPVLIT  433 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~---~~~li--~~~~~~g~--~~~A~~~~~~~~~~~~------~~~~~~  433 (580)
                      +..+..-.|++++|..+..+..+..-.-+...   |..+.  ..+...|.  ..+....|........      .+-..+
T Consensus       503 ~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~  582 (894)
T COG2909         503 LGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRI  582 (894)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHH
Confidence            77788888999999888877654321223332   22222  23455663  2233333333332210      112233


Q ss_pred             HHHHHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCC----CCCHHHHHH
Q 043144          434 YNTVIDGLSK-VGKTEQAMKLLEEMRTKGLKPDTITY--SSLVGGLSREGKVDEAIKLFHDLERLGV----RPNVITYNS  506 (580)
Q Consensus       434 ~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~  506 (580)
                      +..+..++.+ .+...++..-++--......|-...+  ..|+......|++++|...+.++.....    .++...-..
T Consensus       583 r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~  662 (894)
T COG2909         583 RAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY  662 (894)
T ss_pred             HHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            4444444444 11222222222222222222222222  3567778889999999999888864322    222222222


Q ss_pred             HHHH--HHhcCCHHHHHHHHHH
Q 043144          507 IMLG--LCKARQTYRAIDILAD  526 (580)
Q Consensus       507 l~~~--~~~~g~~~~A~~~~~~  526 (580)
                      .+..  -...|+.+.+.....+
T Consensus       663 ~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         663 KVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HhhHHHhcccCCHHHHHHHHHh
Confidence            2222  2346777777776655

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.13  E-value=16  Score=34.10  Aligned_cols=149  Identities=16%  Similarity=0.247  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--c----CChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCC-
Q 043144          377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK--D----GKVDVAVEILNQLSNKHC---SPVLITYNTVIDGLSKVGK-  446 (580)
Q Consensus       377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~--~----g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~-  446 (580)
                      +++.+.+++.+.+.|+.-+..++.+.......  .    .....|..+++.|++.+.   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34456677777777777666555443333222  1    135667788888887662   2333444444332  3333 


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          447 ---TEQAMKLLEEMRTKGLKPDTI--TYSSLVGGLSREGK--VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       447 ---~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  519 (580)
                         .+.+..+|+.+.+.|+..+..  ....++..+.....  ..++.++++.+.+.+.++....|..++-.....+..++
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence               245677777777777665543  23333333222221  45778888888888888777777665543333333324


Q ss_pred             HHHHHHHH
Q 043144          520 AIDILADM  527 (580)
Q Consensus       520 A~~~~~~~  527 (580)
                      ...-+.++
T Consensus       236 ~~~~i~ev  243 (297)
T PF13170_consen  236 IVEEIKEV  243 (297)
T ss_pred             HHHHHHHH
Confidence            44433333

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=89.21  E-value=21  Score=34.00  Aligned_cols=58  Identities=16%  Similarity=0.070  Sum_probs=26.3

Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          416 VEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG  475 (580)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  475 (580)
                      +.+++++.+.+ +.+...+..++..+.+..+.+...+.++++.... +-+...|...+..
T Consensus        51 lsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~  108 (321)
T PF08424_consen   51 LSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDF  108 (321)
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHH
Confidence            44445544443 2334444444555555555555555555555432 1134444444443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=89.04  E-value=24  Score=34.55  Aligned_cols=121  Identities=13%  Similarity=0.094  Sum_probs=74.2

Q ss_pred             HHHhcCChHHHHH-HHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhH
Q 043144          128 GFCKVGKTRKATR-VMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNL  204 (580)
Q Consensus       128 ~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~  204 (580)
                      -....||...|-+ ++..+......|+.  .......+...|+++.+.+.+...  -+.....+...+++...+.|++++
T Consensus       298 k~~~~gd~~aas~~~~~~lr~~~~~p~~--i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        298 KQLADGDIIAASQQLFAALRNQQQDPVL--IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHhhccCHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            3455677665554 44444433223333  333334455688888888887766  223445667778888888888888


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC
Q 043144          205 AMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKG  251 (580)
Q Consensus       205 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  251 (580)
                      |...-+-|+...++ +...........-..|-++++...++++...+
T Consensus       376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~  421 (831)
T PRK15180        376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN  421 (831)
T ss_pred             HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence            88888877776554 33333333333344567788888888876654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.99  E-value=12  Score=31.18  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=16.3

Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQA  450 (580)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  450 (580)
                      ++.+.+.+++|+...+..+++.+.+.|++...
T Consensus        17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L   48 (167)
T PF07035_consen   17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQL   48 (167)
T ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            33344444555555555555555555554433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=88.84  E-value=11  Score=30.49  Aligned_cols=17  Identities=24%  Similarity=0.430  Sum_probs=8.2

Q ss_pred             HHhcCChhHHHHHHHHc
Q 043144          164 YCRLGEIDNALQVLERM  180 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~  180 (580)
                      ++..|++++|+.+|+++
T Consensus        54 ~i~rg~w~eA~rvlr~l   70 (153)
T TIGR02561        54 LIARGNYDEAARILREL   70 (153)
T ss_pred             HHHcCCHHHHHHHHHhh
Confidence            34444455555555444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.68  E-value=1.5  Score=24.86  Aligned_cols=28  Identities=7%  Similarity=0.057  Sum_probs=17.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .|..+..+|...|++++|++.+++.++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            4556666667777777777777766653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=88.55  E-value=1.1  Score=27.60  Aligned_cols=24  Identities=21%  Similarity=0.203  Sum_probs=12.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          542 LIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       542 l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      |+.+|...|+.+.|+++++++...
T Consensus         5 LA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         5 LARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHc
Confidence            445555555555555555555543

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.40  E-value=0.81  Score=25.76  Aligned_cols=27  Identities=22%  Similarity=0.172  Sum_probs=15.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          539 YTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       539 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      +..++.++.+.|++++|.+.++++++.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            344555555666666666666666554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.34  E-value=1.6  Score=24.78  Aligned_cols=27  Identities=7%  Similarity=0.096  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      +|..++.+|...|++++|+..++++++
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455556666666666666666666654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.32  E-value=25  Score=33.87  Aligned_cols=65  Identities=22%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144          395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP---VLITYNTVIDGLSKVGKTEQAMKLLEEMRT  459 (580)
Q Consensus       395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  459 (580)
                      ...++..+...+.+.|.++.|...+..+.......   .+...-.-+..+-..|+..+|+..+++...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44578888888999999999999888887644211   344444556677778888999988888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.97  E-value=6.5  Score=33.72  Aligned_cols=78  Identities=17%  Similarity=0.068  Sum_probs=47.1

Q ss_pred             HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHH
Q 043144          477 SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR---SCKPTEATYTILIEGIAYEGLAK  553 (580)
Q Consensus       477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~  553 (580)
                      .+.|+ ++|.+.|-.+...+.-.++.....|+..|. ..+.++++.++-+.++.   +-.+|+..+..|+..+.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            34444 456666666655443345555555654444 46677777777766643   22456777777777777777777


Q ss_pred             HHH
Q 043144          554 EAL  556 (580)
Q Consensus       554 ~A~  556 (580)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            664

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.86  E-value=16  Score=31.21  Aligned_cols=93  Identities=16%  Similarity=0.109  Sum_probs=67.1

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          404 TALCKDGKVDVAVEILNQLSNKHCSPV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      .-+...|++++|..-|..+...-.+..    .+.|..-..++.+.+.++.|+.-..+.++.+. .....+..-..+|.+.
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~p-ty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNP-TYEKALERRAEAYEKM  181 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCc-hhHHHHHHHHHHHHhh
Confidence            347788999999999998887652211    23455556777888999999988888887641 1233344445678888


Q ss_pred             CCHHHHHHHHHHHHhCCC
Q 043144          480 GKVDEAIKLFHDLERLGV  497 (580)
Q Consensus       480 g~~~~A~~~~~~~~~~~~  497 (580)
                      ..+++|+.-|+++.+..+
T Consensus       182 ek~eealeDyKki~E~dP  199 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESDP  199 (271)
T ss_pred             hhHHHHHHHHHHHHHhCc
Confidence            889999999999987643

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=87.81  E-value=25  Score=34.57  Aligned_cols=45  Identities=16%  Similarity=0.084  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE  549 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  549 (580)
                      +||. .-.|...|++-.|.+.|.+.... +..++..|..|+++|...
T Consensus       338 lYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  338 LYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence            3443 34677889999999988888865 577888999999888643

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.75  E-value=20  Score=32.14  Aligned_cols=51  Identities=8%  Similarity=0.086  Sum_probs=30.9

Q ss_pred             HcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144           96 RNGELEEGFKFLESMVYHGDIPDI---IPCTSLIRGFCKVGKTRKATRVMEIVE  146 (580)
Q Consensus        96 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~  146 (580)
                      +..++++|+.-|+..++.......   .+...++..+.+.|++++....|.++.
T Consensus        39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL   92 (440)
T KOG1464|consen   39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL   92 (440)
T ss_pred             cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            445777788877777765211111   234456666777777777776666554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=87.57  E-value=1.7  Score=24.65  Aligned_cols=29  Identities=21%  Similarity=0.102  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          537 ATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      .+|..++..|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45677777888888888888888877654

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=87.56  E-value=6.5  Score=32.99  Aligned_cols=11  Identities=9%  Similarity=-0.097  Sum_probs=5.3

Q ss_pred             HHHHHHHHHHH
Q 043144          467 ITYSSLVGGLS  477 (580)
Q Consensus       467 ~~~~~l~~~~~  477 (580)
                      .++.++..++.
T Consensus        70 dAlw~lGnA~t   80 (186)
T PF06552_consen   70 DALWCLGNAYT   80 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.34  E-value=10  Score=28.31  Aligned_cols=59  Identities=12%  Similarity=0.174  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          484 EAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       484 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      +..+-+..+....+.|++.+..+.+.+|.+.+++..|..+++-...+. .+....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHH
Confidence            455555555566666777777777777777777777777777666542 22222555444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.29  E-value=4  Score=34.99  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=54.0

Q ss_pred             HHhcCChhHHHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---CCCCChhhHHHHHHHHHhcCCH
Q 043144          164 YCRLGEIDNALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK---ECYPDVITYTILIEATCKESGV  237 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~li~~~~~~g~~  237 (580)
                      +.+.|+ +.|+..|-.+   +.-.++.....|+..|. ..+.++++.++..++..   +-.+|+..+.+|+..+.+.|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            455677 6888888887   22233444455555554 67888899988888764   2256788899999999999999


Q ss_pred             hHHH
Q 043144          238 GQAM  241 (580)
Q Consensus       238 ~~A~  241 (580)
                      +.|.
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8875

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=87.15  E-value=16  Score=30.47  Aligned_cols=30  Identities=10%  Similarity=0.312  Sum_probs=15.5

Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDE  274 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  274 (580)
                      +.+.+.+++|+...+..+++.+.+.|++..
T Consensus        18 rSl~~~~i~~~~~L~~lli~lLi~~~~~~~   47 (167)
T PF07035_consen   18 RSLNQHNIPVQHELYELLIDLLIRNGQFSQ   47 (167)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence            333444555555555555555555555433

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.87  E-value=1.8  Score=25.95  Aligned_cols=28  Identities=25%  Similarity=0.316  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          537 ATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      .++..|+..|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3455666666666666666666666543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.86  E-value=1.9  Score=25.89  Aligned_cols=28  Identities=11%  Similarity=0.181  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      .+++.|...|...|++++|..++++.+.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677888888888999998888888764

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.71  E-value=4.9  Score=29.60  Aligned_cols=62  Identities=11%  Similarity=0.128  Sum_probs=42.8

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      +.=++.+-+..+......|++.+..+.+.+|.+.+++..|..+++-...+. ..+...|..++
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l   83 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL   83 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence            344566666677777777888888888888888888888888887766442 23444555554

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=86.49  E-value=30  Score=32.87  Aligned_cols=98  Identities=11%  Similarity=-0.028  Sum_probs=56.4

Q ss_pred             CCCChhhHHHHHHHHHhcC------------ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--
Q 043144          115 DIPDIIPCTSLIRGFCKVG------------KTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--  180 (580)
Q Consensus       115 ~~~~~~~~~~l~~~~~~~g------------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--  180 (580)
                      .|.|..+|..++..--..-            -.+.-+.++++.++.+ +.+...+..++..+.+..+.++..+.++++  
T Consensus        15 ~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~   93 (321)
T PF08424_consen   15 NPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLF   93 (321)
T ss_pred             CcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3556666666664322211            1344556677777664 566667777777777777777777777776  


Q ss_pred             CCCCCcchHHHHHHHHHh---cCChhHHHHHHHHHH
Q 043144          181 SVAPDVVTYNTILRTLCD---SGKLNLAMEVLHKQL  213 (580)
Q Consensus       181 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~  213 (580)
                      ..+.+...|...+.....   .-.++....+|.+.+
T Consensus        94 ~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l  129 (321)
T PF08424_consen   94 KNPGSPELWREYLDFRQSNFASFTVSDVRDVYEKCL  129 (321)
T ss_pred             HCCCChHHHHHHHHHHHHHhccCcHHHHHHHHHHHH
Confidence            333455666666655443   223455555555444

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.42  E-value=16  Score=32.25  Aligned_cols=95  Identities=14%  Similarity=0.054  Sum_probs=58.8

Q ss_pred             HHhCCCHHHHHHHHHHHH----hCCCCCC--HHHHHHHHHHHHhcCCHHH-------HHHHHHHHHHcCCCC-----CHH
Q 043144          476 LSREGKVDEAIKLFHDLE----RLGVRPN--VITYNSIMLGLCKARQTYR-------AIDILADMVTRSCKP-----TEA  537 (580)
Q Consensus       476 ~~~~g~~~~A~~~~~~~~----~~~~~~~--~~~~~~l~~~~~~~g~~~~-------A~~~~~~~~~~~~~~-----~~~  537 (580)
                      +.....+++|.+.+.-+.    -.+.+|.  ...+..+++.|...|+.+.       |.+.|.+..+..-.|     +..
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~  166 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEAT  166 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHH
Confidence            344555666666665542    1222333  3456667778887777444       455555555432221     134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144          538 TYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK  570 (580)
Q Consensus       538 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  570 (580)
                      ....++....+.|+.++|.++|.+++..+-...
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            556677888999999999999999988765554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=86.22  E-value=6.2  Score=29.07  Aligned_cols=59  Identities=14%  Similarity=0.219  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHH
Q 043144          448 EQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-RLGVRPNVITYNSIM  508 (580)
Q Consensus       448 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~  508 (580)
                      -++.+-++.+....+.|++.+....+.+|.+.+++..|.++|+.+. +.+.  +...|..++
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~l   83 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYIL   83 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHH
Confidence            3556666666666778888888888888888888888888888776 3322  334555443

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=86.15  E-value=6  Score=34.24  Aligned_cols=76  Identities=14%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHH
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PNVITYNSIMLG  510 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~  510 (580)
                      .+.-+..+.+.+...+|+...++-++.. +.|...-..++..++-.|++++|..-++-..+..+.  +-...|..++.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            4455677888999999999998887763 446667778899999999999999998888765443  234566666654

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=85.98  E-value=3.8  Score=37.89  Aligned_cols=96  Identities=14%  Similarity=0.081  Sum_probs=53.7

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL  167 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (580)
                      .+-.+.|.++|.|++|+..|...+.. .|.+.+++..-..+|.+...|..|..=....+..+ ..-+..|..-+.+-...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~-~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAV-YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESL  178 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhcc-CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHH
Confidence            34455677788888888877777654 34466677777777777777776666555554432 11122333333333334


Q ss_pred             CChhHHHHHHHHc-CCCCC
Q 043144          168 GEIDNALQVLERM-SVAPD  185 (580)
Q Consensus       168 g~~~~A~~~~~~~-~~~~~  185 (580)
                      |..++|.+-++.+ ...|+
T Consensus       179 g~~~EAKkD~E~vL~LEP~  197 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPK  197 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcc
Confidence            4455555444444 33444

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=85.82  E-value=90  Score=37.66  Aligned_cols=322  Identities=14%  Similarity=0.095  Sum_probs=165.5

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 043144          226 ILIEATCKESGVGQAMKLLDEMRNKGC--IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS  303 (580)
Q Consensus       226 ~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~  303 (580)
                      .+..+-.+++.+.+|...++.-.....  ......+-.+...|..-+++|....+...-..   .|+   ....|.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence            344566678888888888877311100  11123344455588888888887777663111   222   2234445667


Q ss_pred             cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHH-HHHHhcCCHHHHHH
Q 043144          304 TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVL-HGFCKEKKMDRAIE  382 (580)
Q Consensus       304 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~  382 (580)
                      .|+|..|...|+.+.+.+ ++...+++.++......|.++..+-..+-.... ..+....++.+. .+--+.++++....
T Consensus      1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            888989999998888764 333566777777777777777777665554443 122233333322 23345566666555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCC---------CHHHHHHHHHHHHhCCCHHHHH
Q 043144          383 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVD--VAVEILNQLSNKHCSP---------VLITYNTVIDGLSKVGKTEQAM  451 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~  451 (580)
                      ...   ..+  .+.+....++....+..+-|  .-.+..+.+++.-+.|         -...|..++....-..-    .
T Consensus      1540 ~l~---~~n--~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el----~ 1610 (2382)
T KOG0890|consen 1540 YLS---DRN--IEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL----E 1610 (2382)
T ss_pred             hhh---ccc--ccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH----H
Confidence            443   111  11111111222222221111  1112222222211000         01223333332221110    0


Q ss_pred             HHHHHHHHCCCCCC------HHHHHHHHHHHHhCCCHHHHHHHHHHH-HhCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 043144          452 KLLEEMRTKGLKPD------TITYSSLVGGLSREGKVDEAIKLFHDL-ERLGVRP-----NVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       452 ~~~~~m~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-----~~~~~~~l~~~~~~~g~~~~  519 (580)
                      ...+...  +..++      ..-|..-+..-....+..+-+-.+++. .....+|     -..+|...++.....|+++.
T Consensus      1611 ~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1611 NSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred             HHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence            0011110  11222      122222222222222223322233322 1221122     25678889999889999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144          520 AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       520 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  569 (580)
                      |...+-.+.+.+   -+..+...+.-.+..|+...|..++++-.+.....
T Consensus      1689 A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1689 AQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred             HHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence            999887777654   45667778888999999999999999999776544

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=85.67  E-value=40  Score=33.45  Aligned_cols=412  Identities=8%  Similarity=0.007  Sum_probs=203.2

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcC-ChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVG-KTRKATRVMEIVEDSGAVPDVITYNVLI  161 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~  161 (580)
                      +...|...+.-+.+.+.+.+.-.+|.+|+.. .|.++..|..-..-...-+ +++.|+.+|.+.+... |.++..|....
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~-Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~n-pdsp~Lw~eyf  181 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAK-HPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFN-PDSPKLWKEYF  181 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcC-CCChHHHHHHH
Confidence            4568888888888888899999999999987 4556667766555444444 4999999999888765 55566665544


Q ss_pred             HHHHhcCChhHHHHHHHHcCC-------------------CCCcch--HHH--H-HHHHHhcCChhHHH-HHHHHHHhCC
Q 043144          162 SGYCRLGEIDNALQVLERMSV-------------------APDVVT--YNT--I-LRTLCDSGKLNLAM-EVLHKQLEKE  216 (580)
Q Consensus       162 ~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~--~~~--l-~~~~~~~g~~~~A~-~~~~~~~~~~  216 (580)
                      ++-...  .+++..-=+.++.                   .++...  +..  + .....+.....+-. .+.+.+ ..+
T Consensus       182 rmEL~~--~~Kl~~rr~~~g~~~~~~~~eie~ge~~~~~~~~s~~~~~~~~k~~e~~~~~~~d~~kel~k~i~d~~-~~~  258 (568)
T KOG2396|consen  182 RMELMY--AEKLRNRREELGLDSSDKDEEIERGELAWINYANSVDIIKGAVKSVELSVAEKFDFLKELQKNIIDDL-QSK  258 (568)
T ss_pred             HHHHHH--HHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhhhhcchhhcchHHHHHHHHHHHHHHHHHHHH-hcc
Confidence            332110  0000000000100                   011000  000  0 00000001111111 111111 122


Q ss_pred             CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 043144          217 CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNI  296 (580)
Q Consensus       217 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  296 (580)
                      .+.++.+|..+            |.+.++-...-    +.......-....-.-+.+....+|++..+.  -|+...|..
T Consensus       259 ~~~np~~~~~l------------aqr~l~i~~~t----dl~~~~~~~~~~~~~~k~s~~~~v~ee~v~~--l~t~sm~e~  320 (568)
T KOG2396|consen  259 APDNPLLWDDL------------AQRELEILSQT----DLQHTDNQAKAVEVGSKESRCCAVYEEAVKT--LPTESMWEC  320 (568)
T ss_pred             CCCCCccHHHH------------HHHHHHHHHHh----hccchhhhhhchhcchhHHHHHHHHHHHHHH--hhHHHHHHH
Confidence            23334344332            22333222211    1111111111111112223333666665543  455556666


Q ss_pred             HHHHHHhcC------ChHHHHHHHHHHHHcC-CC-CChhhHHHHHHHHHhcCCH-HHHHHHHHHhhhCCCCCCHhhHHHH
Q 043144          297 ILRSMCSTG------RWMDAERLLAEMVLKG-CS-PSVVTFNILINFLCRKGLL-GRAIDILEKMPKHGCTPNSLSYNPV  367 (580)
Q Consensus       297 ll~~~~~~~------~~~~a~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l  367 (580)
                      .|..|...-      .......+++...+.+ .. .....|..+.-.++..+.. +.|..+......    .+...|..-
T Consensus       321 YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~----~s~k~~~~k  396 (568)
T KOG2396|consen  321 YITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFR----DSGKMWQLK  396 (568)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhc----chHHHHHHH
Confidence            666554332      2333444555544432 12 2334555555555554443 333444333333    356666555


Q ss_pred             HHHHHhcC-CHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-hHHH--HHHHHHHHhCCCCCCHH-HHHHHHHHH
Q 043144          368 LHGFCKEK-KMDRA-IEYLEIMVSRGCYPDIVTYNTLLTALCKDGK-VDVA--VEILNQLSNKHCSPVLI-TYNTVIDGL  441 (580)
Q Consensus       368 ~~~~~~~~-~~~~A-~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A--~~~~~~~~~~~~~~~~~-~~~~l~~~~  441 (580)
                      +....... +++-- ..++......-..+-...|+...     .|+ .+..  ..++....... .|+.. .-+.++..+
T Consensus       397 l~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~s~~-~~~~~tl~s~~l~~~  470 (568)
T KOG2396|consen  397 LQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALLSVI-GADSVTLKSKYLDWA  470 (568)
T ss_pred             HHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHHHhc-CCceeehhHHHHHHH
Confidence            55544221 22211 12222222211112222333333     222 2211  12223333333 23333 346677888


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--hCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhcCCHH
Q 043144          442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS--REGKVDEAIKLFHDLE-RLGVRPNVITYNSIMLGLCKARQTY  518 (580)
Q Consensus       442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~  518 (580)
                      .+.|-..+|...+..+... .+|+...|..++..-.  ..-++.-+..+++.+. ..|  .|+..|-..+.--...|..+
T Consensus       471 ~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg--~d~~lw~~y~~~e~~~g~~e  547 (568)
T KOG2396|consen  471 YESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG--ADSDLWMDYMKEELPLGRPE  547 (568)
T ss_pred             HHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC--CChHHHHHHHHhhccCCCcc
Confidence            8899999999999998876 4677888877776432  1223777888999886 566  47777877766666888888


Q ss_pred             HHHHHHHHHHHc
Q 043144          519 RAIDILADMVTR  530 (580)
Q Consensus       519 ~A~~~~~~~~~~  530 (580)
                      .+-.++.++.+.
T Consensus       548 n~~~~~~ra~kt  559 (568)
T KOG2396|consen  548 NCGQIYWRAMKT  559 (568)
T ss_pred             cccHHHHHHHHh
Confidence            888888777654

>PRK09687 putative lyase; Provisional

Probab=85.64  E-value=30  Score=32.07  Aligned_cols=137  Identities=12%  Similarity=0.065  Sum_probs=74.2

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          394 PDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG-KTEQAMKLLEEMRTKGLKPDTITYSSL  472 (580)
Q Consensus       394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l  472 (580)
                      ++..+-...+.++.+.++ ..+...+-.+.+.   ++..+-...+.++++.+ ..+.+...+..+..   .++..+-...
T Consensus       140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A  212 (280)
T PRK09687        140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA  212 (280)
T ss_pred             CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence            355555556666666665 4455555444442   33444444455555442 23455555555553   3455666666


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144          473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI  546 (580)
Q Consensus       473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  546 (580)
                      +.++.+.|+ +.|...+.+..+.+   +  .....+.++...|.. +|...+.++.+.  .||..+-...+++|
T Consensus       213 ~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        213 IIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             HHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            677777776 34555555555432   2  123455666666663 577777777654  34655555555544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=85.59  E-value=3  Score=34.91  Aligned_cols=40  Identities=23%  Similarity=0.308  Sum_probs=17.9

Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144          203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK  250 (580)
Q Consensus       203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  250 (580)
                      ++|.+.|+++.+.  .|+...|+.-+...      .+|-++..++.+.
T Consensus        97 ~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~  136 (186)
T PF06552_consen   97 EKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ  136 (186)
T ss_dssp             HHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence            3444444444443  35555555555443      2344455555444

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=85.53  E-value=13  Score=27.83  Aligned_cols=43  Identities=16%  Similarity=0.233  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          138 ATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       138 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      .++-++.+...+..|++.+..+.+.+|.+.+++..|.++|+.+
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~i   71 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGI   71 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3344444444455555555555555555555555555555544

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.29  E-value=1.3  Score=23.56  Aligned_cols=22  Identities=27%  Similarity=0.243  Sum_probs=12.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHH
Q 043144          539 YTILIEGIAYEGLAKEALDLLN  560 (580)
Q Consensus       539 ~~~l~~~~~~~g~~~~A~~~~~  560 (580)
                      ...+..++...|++++|..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3445556666666666665554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.19  E-value=30  Score=31.63  Aligned_cols=70  Identities=20%  Similarity=0.227  Sum_probs=39.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCHHHH
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-----RLGVRPNVITY  504 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~~  504 (580)
                      ++.....|..+|.+.+|.++.++.+..+ +.+...+-.++..+...|+--.+.+-++++.     +.|+..+...+
T Consensus       282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie  356 (361)
T COG3947         282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE  356 (361)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence            3444555666677777777666666543 3455556666666666666555555555542     34555444433

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.82  E-value=9.2  Score=33.14  Aligned_cols=77  Identities=16%  Similarity=0.194  Sum_probs=58.5

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA--VPDVITYNVLISG  163 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~  163 (580)
                      +.+.-++.+.+.++..+|+...++-++. .|.|...-..++..|+-.|++++|..-++.+.....  .+....|..++.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVka-kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKA-KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhc-CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            3455678889999999999999888776 456777778899999999999999988777665432  3445566666655

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=84.66  E-value=55  Score=34.18  Aligned_cols=25  Identities=36%  Similarity=0.291  Sum_probs=0.0

Q ss_pred             HhcCCHHHHHHHHHHHHhCCCCCch
Q 043144          547 AYEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       547 ~~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      ...|++.+|.+.+-.+.+.+..|..
T Consensus       506 ~~~~~~~~Aa~~Lv~Ll~~~~~Pk~  530 (566)
T PF07575_consen  506 YDEGDFREAASLLVSLLKSPIAPKS  530 (566)
T ss_dssp             -------------------------
T ss_pred             HhhhhHHHHHHHHHHHHCCCCCcHH
Confidence            3446666666666666655544443

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.51  E-value=28  Score=30.71  Aligned_cols=54  Identities=13%  Similarity=0.159  Sum_probs=28.5

Q ss_pred             CCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          445 GKTEQAMKLLEEMRTK--GLKPDT---ITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~--~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      .+++.|+..|+..-+-  |-..+.   ..+.-+...-+..+++.+|.++|+++......
T Consensus       128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~  186 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD  186 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            4556666666655331  111111   12223333445677788888888887655444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=84.09  E-value=3.9  Score=37.82  Aligned_cols=92  Identities=14%  Similarity=0.066  Sum_probs=64.0

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT  517 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  517 (580)
                      .-|.+.|.+++|+.+|...+..  .| +.+++..-..+|.+...+..|+.-...+...+- .-...|..-+.+-...|..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhH
Confidence            4688999999999999987764  45 888888888899999999988888777765431 1233444444444445666


Q ss_pred             HHHHHHHHHHHHcCCCCC
Q 043144          518 YRAIDILADMVTRSCKPT  535 (580)
Q Consensus       518 ~~A~~~~~~~~~~~~~~~  535 (580)
                      .+|.+-++..++.  .|+
T Consensus       182 ~EAKkD~E~vL~L--EP~  197 (536)
T KOG4648|consen  182 MEAKKDCETVLAL--EPK  197 (536)
T ss_pred             HHHHHhHHHHHhh--Ccc
Confidence            6666666666643  555

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=83.81  E-value=49  Score=32.95  Aligned_cols=162  Identities=12%  Similarity=0.098  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043144          292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGF  371 (580)
Q Consensus       292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  371 (580)
                      ....+++..+..+-.+.-...+..+|+..|  .+-..+..++++|... ..+.-..+++++.+..+. |.+.-..|...|
T Consensus        67 ~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~~y  142 (711)
T COG1747          67 SCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELADKY  142 (711)
T ss_pred             hHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHHHH
Confidence            334444444444444444555555555443  2334444555555444 334444455544444332 222222222222


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC--CC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCC
Q 043144          372 CKEKKMDRAIEYLEIMVSRGCY--PD---IVTYNTLLTALCKDGKVDVAVEILNQLSNKH-CSPVLITYNTVIDGLSKVG  445 (580)
Q Consensus       372 ~~~~~~~~A~~~~~~~~~~~~~--~~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g  445 (580)
                      -+ ++...+..+|.++..+-+.  .+   -..|..+...-  ..+.+....+...+.... ...-...+..+-.-|....
T Consensus       143 Ek-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~e  219 (711)
T COG1747         143 EK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENE  219 (711)
T ss_pred             HH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcccc
Confidence            22 4444455555444432110  00   01222222211  223344444444443221 1122333444444555555


Q ss_pred             CHHHHHHHHHHHHHC
Q 043144          446 KTEQAMKLLEEMRTK  460 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~  460 (580)
                      ++.+|++++..+.+.
T Consensus       220 N~~eai~Ilk~il~~  234 (711)
T COG1747         220 NWTEAIRILKHILEH  234 (711)
T ss_pred             CHHHHHHHHHHHhhh
Confidence            555665555555443

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=83.75  E-value=35  Score=31.23  Aligned_cols=70  Identities=16%  Similarity=0.144  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT-----RSCKPTEAT  538 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  538 (580)
                      +++.....|..+|.+.+|.++.++....++ .+...+..++..+...|+--.|.+.++++.+     .|+..+...
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldp-L~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi  355 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDP-LSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI  355 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcCh-hhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence            355667889999999999999999988764 3778888999999999998888888877753     255555443

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=83.41  E-value=2.5  Score=23.62  Aligned_cols=27  Identities=15%  Similarity=0.175  Sum_probs=19.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          504 YNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +..++.++.+.|++++|.+.|+++++.
T Consensus         3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    3 LYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            345666777778888888888777765

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.41  E-value=34  Score=30.81  Aligned_cols=251  Identities=13%  Similarity=0.154  Sum_probs=125.1

Q ss_pred             cCCHhHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC--CCCHHHHHHHHHHHHhcC
Q 043144          234 ESGVGQAMKLLDEMRNKGCIPD---VVTYNVLVNGICKEGRLDEAIKFLNDMPSY---GC--QPNVITHNIILRSMCSTG  305 (580)
Q Consensus       234 ~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~~~ll~~~~~~~  305 (580)
                      ....++|+.-|++.++......   -.....++..+.+.|++++..+.|.++...   .+  .-+..+.++++.......
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            3456667766766665421111   123344566777777777777777665421   11  123445566665555555


Q ss_pred             ChHHHHHHHHHHHHc-CCCCCh----hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----------CCHhhHHHHHH
Q 043144          306 RWMDAERLLAEMVLK-GCSPSV----VTFNILINFLCRKGLLGRAIDILEKMPKHGCT-----------PNSLSYNPVLH  369 (580)
Q Consensus       306 ~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~  369 (580)
                      +.+--..+|+.-+.. .-..+.    .+-..|...|...+++.+..+++.++.+.-..           .-...|..-|.
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            544444444432221 000111    12345677777778888877777777543111           11345666677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH-----HHhcCChHHHHH-HHHHHHhCC--CCCCHHH---HHHH
Q 043144          370 GFCKEKKMDRAIEYLEIMVSRG-CYPDIVTYNTLLTA-----LCKDGKVDVAVE-ILNQLSNKH--CSPVLIT---YNTV  437 (580)
Q Consensus       370 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~li~~-----~~~~g~~~~A~~-~~~~~~~~~--~~~~~~~---~~~l  437 (580)
                      .|...++-.+...+|++.+.-. .-|.+.. ..+|.-     ..+.|.+++|.. +|+.+...+  ..|...+   |..+
T Consensus       200 mYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVL  278 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVL  278 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHH
Confidence            7877777777778888765422 1233332 233333     346677877754 444444322  1232222   3444


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144          438 IDGLSKVGKTEQAMKLLEEMRTKGL--KPDTITYSSLVGGLSREGKVDEAIKLFHD  491 (580)
Q Consensus       438 ~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  491 (580)
                      ...+.+.|--     -|+.-..+..  .|.....+.++.+|... ++.+-.+++..
T Consensus       279 ANMLmkS~iN-----PFDsQEAKPyKNdPEIlAMTnlv~aYQ~N-dI~eFE~Il~~  328 (440)
T KOG1464|consen  279 ANMLMKSGIN-----PFDSQEAKPYKNDPEILAMTNLVAAYQNN-DIIEFERILKS  328 (440)
T ss_pred             HHHHHHcCCC-----CCcccccCCCCCCHHHHHHHHHHHHHhcc-cHHHHHHHHHh
Confidence            4444444310     0100001111  34445567777777544 44444444443

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.29  E-value=6.6  Score=35.96  Aligned_cols=103  Identities=17%  Similarity=0.170  Sum_probs=62.2

Q ss_pred             CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144          356 GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG---CYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI  432 (580)
Q Consensus       356 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  432 (580)
                      |.+....+...++..-....+++.+...+-++....   ..|+. +-...+..+. .-+.++++.++..-.+.|+.||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            334455555556555555667777777776665431   01111 1122222222 235567777777777777778888


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTK  460 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~  460 (580)
                      +++.+++.+.+.+++.+|.++.-.|+..
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            8888888888888887777777666544

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.47  E-value=34  Score=30.20  Aligned_cols=21  Identities=5%  Similarity=0.105  Sum_probs=13.2

Q ss_pred             HHhcCChHHHHHHHHHHHHcC
Q 043144          301 MCSTGRWMDAERLLAEMVLKG  321 (580)
Q Consensus       301 ~~~~~~~~~a~~~~~~~~~~~  321 (580)
                      -+..+++.+|+.+|+++....
T Consensus       164 aa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  164 AAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            345566777777777766553

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.42  E-value=9.1  Score=35.12  Aligned_cols=101  Identities=22%  Similarity=0.288  Sum_probs=62.8

Q ss_pred             CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcc-----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhh
Q 043144          149 GAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVV-----TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVIT  223 (580)
Q Consensus       149 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  223 (580)
                      |.+..+.+...++..-.+..+++.+...+-++...|+..     +-...++.+.+ -++++++.++..-++-|+-||.++
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc-cChHHHHHHHhCcchhccccchhh
Confidence            444455555555555555667777777766663333321     12233333333 345577777777777788888888


Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144          224 YTILIEATCKESGVGQAMKLLDEMRNK  250 (580)
Q Consensus       224 ~~~li~~~~~~g~~~~A~~~~~~~~~~  250 (580)
                      ++.+++.+.+.+++.+|.++...|...
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            888888888888888877777666544

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=82.27  E-value=4.4  Score=22.89  Aligned_cols=29  Identities=7%  Similarity=-0.004  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .+|..+...|...|++++|.+.|++.++.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35667778888888888888888887754

...

>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human

Probab=82.06  E-value=69  Score=33.43  Aligned_cols=18  Identities=28%  Similarity=0.488  Sum_probs=9.4

Q ss_pred             HHHHHHHcCChHHHHHHH
Q 043144           90 HLRRLVRNGELEEGFKFL  107 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~  107 (580)
                      .+..+.-.|.+++|.+++
T Consensus       154 ~v~~lvlrG~~~~a~~lL  171 (566)
T PF07575_consen  154 YVQRLVLRGLFDQARQLL  171 (566)
T ss_dssp             HHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHH
Confidence            455555555555555555

Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=81.77  E-value=2.3  Score=22.58  Aligned_cols=16  Identities=19%  Similarity=0.231  Sum_probs=6.3

Q ss_pred             HHHHHhcCChhHHHHH
Q 043144          161 ISGYCRLGEIDNALQV  176 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~  176 (580)
                      ...+...|++++|..+
T Consensus         8 a~~~~~~G~~~eA~~~   23 (26)
T PF07721_consen    8 ARALLAQGDPDEAERL   23 (26)
T ss_pred             HHHHHHcCCHHHHHHH
Confidence            3333334444444333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.58  E-value=75  Score=33.51  Aligned_cols=88  Identities=18%  Similarity=0.153  Sum_probs=38.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCChhhHHHHHHHHHh---
Q 043144          263 VNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG-CSPSVVTFNILINFLCR---  338 (580)
Q Consensus       263 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---  338 (580)
                      ...+.-.|++|.|++.+-+..  ....+.+.+...+..|   |-+.-....-..++... -.+...-+..|+..|.+   
T Consensus       265 f~~LlLtgqFE~AI~~L~~~~--~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~  339 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYRNE--FNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE  339 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred             HHHHHHHhhHHHHHHHHHhhc--cCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence            345566888999988887721  1133444444333322   22222111112332221 01112557778888876   


Q ss_pred             cCCHHHHHHHHHHhhhC
Q 043144          339 KGLLGRAIDILEKMPKH  355 (580)
Q Consensus       339 ~g~~~~a~~~~~~~~~~  355 (580)
                      ..+...|.+++-.+...
T Consensus       340 ~td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  340 ITDPREALQYLYLICLF  356 (613)
T ss_dssp             TT-HHHHHHHHHGGGGS
T ss_pred             ccCHHHHHHHHHHHHHc
Confidence            45778888888766654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=81.30  E-value=1  Score=36.76  Aligned_cols=83  Identities=14%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhH
Q 043144          125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNL  204 (580)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  204 (580)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++...    ..-...++..|.+.|.+++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~----~yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN----NYDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS----SS-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc----ccCHHHHHHHHHhcchHHH
Confidence            456677788888888999999877656778889999999999988888888887442    1333456667777777777


Q ss_pred             HHHHHHH
Q 043144          205 AMEVLHK  211 (580)
Q Consensus       205 A~~~~~~  211 (580)
                      |.-++.+
T Consensus        89 a~~Ly~~   95 (143)
T PF00637_consen   89 AVYLYSK   95 (143)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            6666554

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.14  E-value=34  Score=29.29  Aligned_cols=86  Identities=16%  Similarity=0.118  Sum_probs=36.6

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144          370 GFCKEKKMDRAIEYLEIMVSRGCYPDIV-----TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV  444 (580)
Q Consensus       370 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  444 (580)
                      .+...+++++|...++..+..   |...     +-..|.......|.+|+|+..++.....+  ........-.+++...
T Consensus        98 ~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~--w~~~~~elrGDill~k  172 (207)
T COG2976          98 AEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES--WAAIVAELRGDILLAK  172 (207)
T ss_pred             HHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc--HHHHHHHHhhhHHHHc
Confidence            344455555555555544432   1111     11223333444555555555555444332  1111222233444455


Q ss_pred             CCHHHHHHHHHHHHHC
Q 043144          445 GKTEQAMKLLEEMRTK  460 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~  460 (580)
                      |+-++|..-|+..+..
T Consensus       173 g~k~~Ar~ay~kAl~~  188 (207)
T COG2976         173 GDKQEARAAYEKALES  188 (207)
T ss_pred             CchHHHHHHHHHHHHc
Confidence            5555555555554443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=80.54  E-value=50  Score=30.82  Aligned_cols=45  Identities=18%  Similarity=0.190  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCC
Q 043144          239 QAMKLLDEMRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYG  286 (580)
Q Consensus       239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  286 (580)
                      .|...|..+-..+   +......+...|..    ..+.++|..+|....+.|
T Consensus       173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g  221 (292)
T COG0790         173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG  221 (292)
T ss_pred             hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence            4555555555443   23333333333322    224555555555555544

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=80.50  E-value=11  Score=37.87  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=47.6

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHH
Q 043144          131 KVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEV  208 (580)
Q Consensus       131 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~  208 (580)
                      ..|+...|...+.......+...-+....|.....+.|-...|-.++.+. . ....+.++..+++++....+++.|++.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            45666666666665544332222223333555555555555666555544 1 123345566666777777777777777


Q ss_pred             HHHHHhCC
Q 043144          209 LHKQLEKE  216 (580)
Q Consensus       209 ~~~~~~~~  216 (580)
                      |+.+++..
T Consensus       699 ~~~a~~~~  706 (886)
T KOG4507|consen  699 FRQALKLT  706 (886)
T ss_pred             HHHHHhcC
Confidence            77766653

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=80.21  E-value=57  Score=32.28  Aligned_cols=37  Identities=11%  Similarity=0.003  Sum_probs=19.8

Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      .|...|+.-.|.+.|.+.... +..++..|..|..+|.
T Consensus       344 ~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  344 LYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCI  380 (696)
T ss_pred             HHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHH
Confidence            445555666666666555432 2335555655555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	580
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-21
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-21
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-16
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-06
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	8e-06
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 98.7 bits (244), Expect = 1e-21
 Identities = 24/215 (11%), Positives = 57/215 (26%), Gaps = 4/215 (1%)

Query: 219 PDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF 278
           P       L++    +  +        +                        +L  A   
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 279 LN---DMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF 335
           L              +  +N ++      G + +   +L  +   G +P ++++   +  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 336 LCRKGLLGRAI-DILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP 394
           + R+      I   LE+M + G    +L    +L    +   +    +           P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269

Query: 395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP 429
             V  + LL  +          ++   L    C  
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 98.0 bits (242), Expect = 2e-21
 Identities = 32/259 (12%), Positives = 76/259 (29%), Gaps = 20/259 (7%)

Query: 304 TGRWMDAERLLAEMVLKGC--SPSVVTFNILINFLCRKGL------------LGRAIDIL 349
            GRW  A+ L  +   +            +       K L               A  + 
Sbjct: 23  CGRW--AKILEKDKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLE 80

Query: 350 EKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD 409
           +   +   +P       +L     +  +D                               
Sbjct: 81  DCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT 140

Query: 410 GKVDVAVEILNQLSN---KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT 466
            ++ +A  +L        K     L  YN V+ G ++ G  ++ + +L  ++  GL PD 
Sbjct: 141 DQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDL 200

Query: 467 ITYSSLVGGLSREGKVDEAI-KLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILA 525
           ++Y++ +  + R+ +    I +    + + G++   +    ++    +A        +  
Sbjct: 201 LSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP 260

Query: 526 DMVTRSCKPTEATYTILIE 544
                   P     + L+ 
Sbjct: 261 TFSLPPQLPPPVNTSKLLR 279

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 88.3 bits (217), Expect = 2e-18
 Identities = 30/235 (12%), Positives = 73/235 (31%), Gaps = 7/235 (2%)

Query: 134 KTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVA---PDVVTYN 190
             + A  + +    +   P       L+        +D       + S A          
Sbjct: 72  SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131

Query: 191 TILRTLCDSGKLNLAMEVL---HKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM 247
              +    + +L LA  +L   H Q +K     +  Y  ++    ++    + + +L  +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 248 RNKGCIPDVVTYNVLVNGICKEGRLDEAI-KFLNDMPSYGCQPNVITHNIILRSMCSTGR 306
           ++ G  PD+++Y   +  + ++ +    I + L  M   G +   +   ++L        
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251

Query: 307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNS 361
                ++     L    P  V  + L+  +  K        +   +    C    
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEK 306

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 68.3 bits (165), Expect = 4e-12
 Identities = 26/188 (13%), Positives = 66/188 (35%), Gaps = 7/188 (3%)

Query: 75  MENSSLNFEDFESNNHLRRLVRNGELEEGFKFLE---SMVYHGDIPDIIPCTSLIRGFCK 131
              + L+ +        +  +   +L      L           +  +    +++ G+ +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 132 VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ-VLERMS---VAPDVV 187
            G  ++   V+ +V+D+G  PD+++Y   +    R  +    ++  LE+MS   +    +
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQAL 237

Query: 188 TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM 247
               +L     +  L    +V          P  +  + L+     + G     KL   +
Sbjct: 238 FTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297

Query: 248 RNKGCIPD 255
           +   C+ +
Sbjct: 298 KTLQCLFE 305

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.9 bits (164), Expect = 5e-12
 Identities = 16/143 (11%), Positives = 40/143 (27%), Gaps = 4/143 (2%)

Query: 428 SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA-- 485
           SP       ++         +       +     L        +         ++  A  
Sbjct: 89  SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148

Query: 486 -IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE 544
            + + H   +      +  YN++MLG  +       + +L  +      P   +Y   ++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208

Query: 545 GIAYEGLAKEAL-DLLNQLCSRG 566
            +  +      +   L Q+   G
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEG 231

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 91.1 bits (225), Expect = 3e-19
 Identities = 74/480 (15%), Positives = 145/480 (30%), Gaps = 142/480 (29%)

Query: 147 DSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVV--TYNTILRTLCDSGKLNL 204
           D   V D +  ++L        EID+ +        + D V  T   +  TL    +  +
Sbjct: 34  DCKDVQD-MPKSILSKE-----EIDHIIM-------SKDAVSGTL-RLFWTLLSKQE-EM 78

Query: 205 AMEVLHKQLEKECYPDVITYTILIEATCKES-GVGQAMKLLDEMRNKGC--IPDVVTYNV 261
             + + + L          Y  L+     E        ++  E R++          YNV
Sbjct: 79  VQKFVEEVLRIN-------YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 262 LVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG 321
             + +    +L +A+  L               N+++  +  +G+       +A  V   
Sbjct: 132 --SRLQPYLKLRQALLELRPAK-----------NVLIDGVLGSGKTW-----VALDVCL- 172

Query: 322 CSPSVVT---FNIL-INFLCRKGLLGRAIDILE-------KMPKHGCTPNSLSYNPVLHG 370
            S  V     F I  +N             +LE       ++  +  + +  S N  L  
Sbjct: 173 -SYKVQCKMDFKIFWLNL----KNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR- 226

Query: 371 FCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVA-VEILNQLSNKHCSP 429
                 +      L  ++    Y      N LL  L      +V   +  N   N  C  
Sbjct: 227 ------IHSIQAELRRLLKSKPYE-----NCLLV-L--L---NVQNAKAWNAF-NLSC-K 267

Query: 430 VLIT--YNTVIDGLSKVGKT-------------EQAMKLLE---EMRTKGLKPDTITYS- 470
           +L+T  +  V D LS    T             ++   LL    + R + L  + +T + 
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Query: 471 ---SLVGGLSREG-------------KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA 514
              S++    R+G             K+   I+    L  L   P               
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--LNVL--EPAEY------------ 371

Query: 515 RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAE 574
           R+ +  + +                +++   +       + + ++N+L    +V+K   E
Sbjct: 372 RKMFDRLSVFPPSA----HIPTILLSLIWFDVIKS----DVMVVVNKLHKYSLVEKQPKE 423

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 82.6 bits (203), Expect = 2e-16
 Identities = 95/639 (14%), Positives = 201/639 (31%), Gaps = 142/639 (22%)

Query: 24  VDFKKHKGFQKQRQNR----VFAISKVETLSFNVKMKHGEAFVQGHLNNG---HI---SS 73
           +DF+     + Q Q +    VF  + V+        K  +   +  L+     HI     
Sbjct: 7   MDFETG---EHQYQYKDILSVFEDAFVDNFDC----KDVQDMPKSILSKEEIDHIIMSKD 59

Query: 74  GMENSSLNFEDFES--NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK 131
            +  +   F    S     +++ V    L   +KFL                S I+   +
Sbjct: 60  AVSGTLRLFWTLLSKQEEMVQKFV-EEVLRINYKFL---------------MSPIKTEQR 103

Query: 132 VGKTRKATRVMEIVEDSGAVPDVIT-YNVLISGYCRLGEIDNALQVLERMSVAPDVVTYN 190
              +      +E  +       V   YNV      RL       Q L  +  A +V+   
Sbjct: 104 -QPSMMTRMYIEQRDRLYNDNQVFAKYNV-----SRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 191 TILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK 250
                +  SGK  +A++V      +      I +  L      E+ +    KLL ++   
Sbjct: 158 -----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212

Query: 251 GCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM---PSYGCQPNVITHNIILRSMCSTGRW 307
                  + N+       + R+      L  +     Y    N +   ++L ++ +   W
Sbjct: 213 WTSRSDHSSNI-------KLRIHSIQAELRRLLKSKPY---ENCL---LVLLNVQNAKAW 259

Query: 308 --MDAE-RLL--------AEMVLKGCSPSVVTFNILINFLCR---KGLLGRAIDI-LEKM 352
              +   ++L         +  L   + + ++ +     L     K LL + +D   + +
Sbjct: 260 NAFNLSCKILLTTRFKQVTD-FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL 318

Query: 353 PKHGCT--PNSLS------------YNPVLHGFCKEKK--MDRAIEYLEIMVSRGCYPDI 396
           P+   T  P  LS            ++   H  C +    ++ ++  LE    R  +  +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378

Query: 397 VTYN-------TLLTALCKDGKVDVAVEILNQLSN-----KHCSPVLITYNTVIDGLSKV 444
             +         LL+ +  D      + ++N+L       K      I+  ++   L   
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 445 GKTEQAM--KLLEEMR-TKGLKPDTIT--------YSSLV---GGLSREGKVDEAIKLFH 490
            + E A+   +++     K    D +         YS +      +    ++     +F 
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 491 DLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM------VTRSC-KPTEATYTIL- 542
           D   L  +   I ++S       +      ++ L  +      +  +  K       IL 
Sbjct: 499 DFRFLEQK---IRHDSTAWNASGS-----ILNTLQQLKFYKPYICDNDPKYERLVNAILD 550

Query: 543 -IEGIAYEGLAKEALDLLNQLC---SRGVVKKSSAEQVA 577
            +  I    +  +  DLL ++        + + + +QV 
Sbjct: 551 FLPKIEENLICSKYTDLL-RIALMAEDEAIFEEAHKQVQ 588

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 61/430 (14%), Positives = 117/430 (27%), Gaps = 84/430 (19%)

Query: 153 DVITYNVLISGYCRLGEIDNALQVLER-MSVAPD-VVTYNTILRTLCDSGKLNLAMEVLH 210
            V+       G   L  +   L VL +   + P  VV   +          +   + VL 
Sbjct: 71  QVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLC 130

Query: 211 KQLEKECYPD-VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD-VVTYNVLVNGICK 268
           +       P+ V+              V   + +L   +  G  P+ VV       G   
Sbjct: 131 QAHGLT--PEQVVAIASHDGGKQALETVQALLPVLC--QAHGLTPEQVVAIASNGGGKQA 186

Query: 269 EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVT 328
              +   +  L    ++G  P                                    VV 
Sbjct: 187 LETVQRLLPVLCQ--AHGLTPQ----------------------------------QVVA 210

Query: 329 FNILINFLCRKGLLGRAIDILEKMPKHGCTPN-SLSYNPVLHGFCKEK--KMDRAIEY-- 383
                        + R + +L +   HG TP   ++     +G  K+    + R +    
Sbjct: 211 IASNGGGKQALETVQRLLPVLCQA--HGLTPQQVVAIA--SNGGGKQALETVQRLLPVLC 266

Query: 384 --LEIMVSRGCYPD-IVTYNTLLTALCKDGKVDVAVEILNQ---LSNKHCSPVLITYNTV 437
               +       P  +V   +          V   + +L Q   L+ +     ++   + 
Sbjct: 267 QAHGL------TPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQ----VVAIASN 316

Query: 438 IDGLSKVGKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLER-L 495
             G   +   ++ + +L   +  GL P   +  +S  GG      V   +     L +  
Sbjct: 317 GGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASHDGGKQALETVQRLLP---VLCQAH 371

Query: 496 GVRPN-VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEA-TYTILIEGIAYE--GL 551
           G+ P  V+   S   G        R + +L         P +             +    
Sbjct: 372 GLTPEQVVAIASNGGGKQALETVQRLLPVLCQAH--GLTPEQVVAIASH--DGGKQALET 427

Query: 552 AKEALDLLNQ 561
            +  L +L Q
Sbjct: 428 VQRLLPVLCQ 437

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.0 bits (111), Expect = 8e-06
 Identities = 39/229 (17%), Positives = 75/229 (32%), Gaps = 20/229 (8%)

Query: 164 YCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP-DVI 222
           Y    +    L  ++  S  P++         L    + +  +  L +++ +     +  
Sbjct: 44  YLAQRKYGVVLDEIKPSSA-PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTT 102

Query: 223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM 282
              +       +     A++ L +  +  C        + V  + K  RLD A K L  M
Sbjct: 103 FLLMAASIYFYDQNPDAALRTLHQGDSLEC------MAMTVQILLKLDRLDLARKELKKM 156

Query: 283 PSYGCQPNVITHNIILRSMCSTG--RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKG 340
                +   +T         + G  +  DA  +  EM    CSP+++  N        +G
Sbjct: 157 QDQD-EDATLTQLATAWVSLAAGGEKLQDAYYIFQEM-ADKCSPTLLLLNGQAACHMAQG 214

Query: 341 LLGRAIDILEKM----PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLE 385
               A  +L++       H   P +L  N V+      K  +    YL 
Sbjct: 215 RWEAAEGVLQEALDKDSGH---PETL-INLVVLSQHLGKPPEVTNRYLS 259

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 43.2 bits (101), Expect = 1e-04
 Identities = 29/238 (12%), Positives = 56/238 (23%), Gaps = 43/238 (18%)

Query: 164 YCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVIT 223
             R+   D     L R         + +       SG + ++M  L+ ++        IT
Sbjct: 44  IGRIRCGDTDRVTLFRA--------WYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT 95

Query: 224 YTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMP 283
           Y +    +     +G A     +                       G   +A++ L   P
Sbjct: 96  YPV---TSPLAITMGFAACEAAQ-----------------------GNYADAMEALEAAP 129

Query: 284 SYGCQPNV--ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLC-RKG 340
             G +  V  +   +         RW D    +                +          
Sbjct: 130 VAGSEHLVAWMKAVVYGA----AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLA 185

Query: 341 LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK--KMDRAIEYLEIMVSRGCYPDI 396
           L   A   L +                     +        A+  LE + +    P +
Sbjct: 186 LFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKV 243

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	580
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.91
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.9
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.89
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.85
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.83
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.83
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.82
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.81
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.79
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.76
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.72
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.7
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.69
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.69
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.68
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.68
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.66
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.66
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.65
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.64
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.63
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.63
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.59
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.58
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.58
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.57
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.56
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.55
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.54
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.51
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.48
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.45
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.44
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.41
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.35
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.29
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.24
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.21
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.2
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.19
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.16
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.16
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.15
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.15
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.14
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.14
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.12
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.12
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.11
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.1
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.1
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.09
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.07
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.07
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.06
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.01
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.98
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.97
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.92
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.92
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.89
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.89
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.87
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.85
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.85
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.84
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.83
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.8
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.8
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.78
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.76
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.76
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.76
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.75
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.75
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.74
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.71
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.7
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.69
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.68
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.67
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.66
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.65
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.62
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.61
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.58
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.58
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.57
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.57
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.56
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.55
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.54
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.53
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.51
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.49
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.49
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.49
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.46
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.43
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.42
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.39
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.36
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.34
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.34
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.33
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.32
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.32
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.31
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.28
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.28
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.27
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.25
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.24
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.18
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.15
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.97
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.96
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.95
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.9
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.85
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.84
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.81
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.77
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.71
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.7
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.62
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.27
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.25
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.19
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.1
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.05
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.0
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.96
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.9
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.9
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.88
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.83
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.77
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.75
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.69
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.63
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.48
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.4
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.36
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.35
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.33
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.17
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.11
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.78
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.76
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.57
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	94.69
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.48
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.27
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.13
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	93.86
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	93.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.25
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	93.03
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.8
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.07
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	91.22
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	90.78
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.78
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	90.36
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	89.54
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.18
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	88.43
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	87.51
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.38
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	85.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	83.59
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.25
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	80.89
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.65
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	80.55
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	80.36

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.7e-42  Score=359.99  Aligned_cols=477  Identities=11%  Similarity=0.041  Sum_probs=407.1

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      +...|+.++..+.+.|++++|+.+|++++..  .|+..++..++.+|.+.|++++|..+|+.+...  ++++.+++.++.
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~  158 (597)
T 2xpi_A           83 REDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAF  158 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHH
Confidence            3457899999999999999999999999853  467788899999999999999999999988654  678999999999


Q ss_pred             HHHhcCChhHHHHHHHHc-CC-----------------CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhH
Q 043144          163 GYCRLGEIDNALQVLERM-SV-----------------APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITY  224 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~-~~-----------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  224 (580)
                      +|.+.|++++|+++|+++ +.                 +++..+|+.++.+|.+.|++++|+++|+++.+.+ +.+...+
T Consensus       159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  237 (597)
T 2xpi_A          159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAF  237 (597)
T ss_dssp             HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHH
Confidence            999999999999999965 21                 1247789999999999999999999999999865 2245555


Q ss_pred             HHHHHHHHhcCCHhHHH--HH-HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHH
Q 043144          225 TILIEATCKESGVGQAM--KL-LDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSM  301 (580)
Q Consensus       225 ~~li~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~  301 (580)
                      ..++..+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.  +++..+|..++.+|
T Consensus       238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  315 (597)
T 2xpi_A          238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTL  315 (597)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHH
T ss_pred             HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHH
Confidence            55555444333222221  11 444444443444556777788999999999999999999876  58999999999999


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144          302 CSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI  381 (580)
Q Consensus       302 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  381 (580)
                      .+.|++++|..+|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..++..++..|.+.|++++|.
T Consensus       316 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~  393 (597)
T 2xpi_A          316 FVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEAR  393 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHH
Confidence            99999999999999999875 4477899999999999999999999999998764 347889999999999999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 043144          382 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKG  461 (580)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  461 (580)
                      ++|+++.+..+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+..
T Consensus       394 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  471 (597)
T 2xpi_A          394 RYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF  471 (597)
T ss_dssp             HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            99999987643 367799999999999999999999999998876 4578899999999999999999999999999864


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 043144          462 LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRPN--VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT  535 (580)
Q Consensus       462 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  535 (580)
                       +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++.+.+ +.+
T Consensus       472 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~  549 (597)
T 2xpi_A          472 -QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TND  549 (597)
T ss_dssp             -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCC
T ss_pred             -CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCC
Confidence             457899999999999999999999999999765    55677  7899999999999999999999999999875 668


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 043144          536 EATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS  572 (580)
Q Consensus       536 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~  572 (580)
                      ..+|..++.+|...|++++|.++++++.+..+..+..
T Consensus       550 ~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~  586 (597)
T 2xpi_A          550 ANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMA  586 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHH
Confidence            9999999999999999999999999999987554433

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-39  Score=338.61  Aligned_cols=461  Identities=12%  Similarity=-0.013  Sum_probs=380.7

Q ss_pred             HHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 043144           95 VRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNAL  174 (580)
Q Consensus        95 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  174 (580)
                      ...|.+..+...+..+    ..++...|+.++..|.+.|++++|..+|+++...  .|+..++..++.+|.+.|++++|+
T Consensus        64 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~  137 (597)
T 2xpi_A           64 STDGSFLKERNAQNTD----SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAK  137 (597)
T ss_dssp             ----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccCccCCCCCccccc----hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHH
Confidence            3445555565555543    3357889999999999999999999999999865  467889999999999999999999


Q ss_pred             HHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCCHh
Q 043144          175 QVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK---------------ECYPDVITYTILIEATCKESGVG  238 (580)
Q Consensus       175 ~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~li~~~~~~g~~~  238 (580)
                      .+|+++ ..+++..+++.++.+|.+.|++++|+++|+++...               +.+++..+|+.++.+|.+.|+++
T Consensus       138 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  217 (597)
T 2xpi_A          138 CLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD  217 (597)
T ss_dssp             HHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence            999998 56788999999999999999999999999853222               12335789999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHH--H-HHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          239 QAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIK--F-LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLA  315 (580)
Q Consensus       239 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~-~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  315 (580)
                      +|.++|+++.+.++. +...+..++..+...+..+.+..  + +..+...+..+...+|+.++..|.+.|++++|.++|+
T Consensus       218 ~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          218 RAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            999999999987532 56667767665544433322221  1 3444444334455667777888999999999999999


Q ss_pred             HHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 043144          316 EMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD  395 (580)
Q Consensus       316 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  395 (580)
                      ++.+.  +++..++..++.+|.+.|++++|..+|+++.+.++. +..++..++.++.+.|++++|..+++++.+.. ..+
T Consensus       297 ~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~  372 (597)
T 2xpi_A          297 SINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEK  372 (597)
T ss_dssp             TSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTS
T ss_pred             HhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-ccc
Confidence            99876  578999999999999999999999999999987644 78899999999999999999999999998754 347


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG  475 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  475 (580)
                      ..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.+
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  450 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQ  450 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHH
Confidence            7899999999999999999999999998755 4568899999999999999999999999999875 4578899999999


Q ss_pred             HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhc
Q 043144          476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR----SCKPT--EATYTILIEGIAYE  549 (580)
Q Consensus       476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~  549 (580)
                      |.+.|++++|.++|+++.+..+. +..+|..++.+|.+.|++++|.++++++.+.    +..|+  ..+|..++.+|.+.
T Consensus       451 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  529 (597)
T 2xpi_A          451 HMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKL  529 (597)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHh
Confidence            99999999999999999876544 7899999999999999999999999999876    55677  78999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCC
Q 043144          550 GLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       550 g~~~~A~~~~~~~~~~g~~~  569 (580)
                      |++++|.++++++.+.++..
T Consensus       530 g~~~~A~~~~~~~~~~~p~~  549 (597)
T 2xpi_A          530 KMYDAAIDALNQGLLLSTND  549 (597)
T ss_dssp             TCHHHHHHHHHHHHHHSSCC
T ss_pred             cCHHHHHHHHHHHHHhCCCC
Confidence            99999999999999987543

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.1e-29  Score=249.69  Aligned_cols=122  Identities=12%  Similarity=0.140  Sum_probs=57.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      ...+.+.|++++|++.++++... .|.+...+..+...+...|++++|...++...+.. |.+..+|..++..|.+.|++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            34445555555555555555443 23333444444445555555555555555544433 34444555555555555555


Q ss_pred             hHHHHHHHHc-CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144          171 DNALQVLERM-SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLE  214 (580)
Q Consensus       171 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  214 (580)
                      ++|+..|+++ ...| +..+|..++.++.+.|++++|.+.|+++++
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  129 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQ  129 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555544 1112 223344444444444444444444444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1.7e-29  Score=248.29  Aligned_cols=382  Identities=15%  Similarity=0.065  Sum_probs=336.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCCh
Q 043144          125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKL  202 (580)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~  202 (580)
                      ++..+.+.|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++..  ..+.+..+|..++.++.+.|++
T Consensus         5 ~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            4566889999999999999998876 667788888999999999999999999887  4456788999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM  282 (580)
Q Consensus       203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  282 (580)
                      ++|++.|+++++.. +.+..+|..++..+.+.|++++|.+.|+++.+..+ .+...+..+...+...|++++|...|+++
T Consensus        84 ~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A           84 QEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            99999999999864 33566899999999999999999999999998742 25667888999999999999999999999


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 043144          283 PSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSL  362 (580)
Q Consensus       283 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  362 (580)
                      .+.. +.+..+|..+...+...|++++|...|+++++.+ +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus       162 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~  238 (388)
T 1w3b_A          162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAV  238 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHH
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHH
Confidence            8764 4567899999999999999999999999999875 446778999999999999999999999999887443 678


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS  442 (580)
Q Consensus       363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  442 (580)
                      ++..+...+...|++++|+..|+++.+.++. +..++..+..++.+.|++++|...|+++.+.. +.+..++..+...+.
T Consensus       239 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  316 (388)
T 1w3b_A          239 VHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHH
Confidence            8999999999999999999999999987433 56789999999999999999999999998875 567889999999999


Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144          443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ  516 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  516 (580)
                      ..|++++|...++++.+.. +.+..++..++..+.+.|++++|...|+++.+..+. +...|..+...+...|+
T Consensus       317 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          317 EQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTCC
T ss_pred             HcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHhHHHHHHHccC
Confidence            9999999999999998763 446789999999999999999999999999986544 68889899888877664

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.5e-28  Score=245.14  Aligned_cols=184  Identities=15%  Similarity=0.204  Sum_probs=101.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hHHHHHHHHHHHhCCCCCCHHHH
Q 043144          364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK---------VDVAVEILNQLSNKHCSPVLITY  434 (580)
Q Consensus       364 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~A~~~~~~~~~~~~~~~~~~~  434 (580)
                      ++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|++.+.         ++.|.++|++|...++.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            444445555555555555555555555555555555555555444332         34555555555555555555555


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144          435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA  514 (580)
Q Consensus       435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  514 (580)
                      +.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            55555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          515 RQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       515 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      |++++|.+++++|.+.+..|+..||..++..|.
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~  221 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFK  221 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHh
Confidence            555555555555555555555555555555554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.5e-28  Score=243.59  Aligned_cols=185  Identities=15%  Similarity=0.245  Sum_probs=108.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC---------HHHHHHHHHHHHHCCCCCCHHHH
Q 043144          329 FNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK---------MDRAIEYLEIMVSRGCYPDIVTY  399 (580)
Q Consensus       329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~~~~~~~~~~~~~  399 (580)
                      ++.++++|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+.         +++|.++|++|.+.|+.||..+|
T Consensus        29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ty  108 (501)
T 4g26_A           29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATF  108 (501)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHH
Confidence            444455555555555555555555555555555555555555543332         45566666666666666666666


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      +.+|.+|++.|++++|.++|++|.+.++.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++.
T Consensus       109 n~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~  188 (501)
T 4g26_A          109 TNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDT  188 (501)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144          480 GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK  513 (580)
Q Consensus       480 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  513 (580)
                      |++++|.++|++|.+.+..|+..||+.++..|..
T Consensus       189 g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          189 KNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            6666666666666655666666666666555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.7e-26  Score=233.44  Aligned_cols=436  Identities=12%  Similarity=0.024  Sum_probs=291.8

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+......+.+.|++++|+..|++++...  |+..++..++.++.+.|++++|...|+++.+.+ |.+..++..++.+|.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            56777889999999999999999998864  588889999999999999999999999998876 667888999999999


Q ss_pred             hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144          166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL  243 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  243 (580)
                      ..|++++|+..|+++  ..+++......++..+........+.+.+..+...+..|+...+..-...............+
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            999999999999988  223444444455554444333333333332221111111111111100001111111111111


Q ss_pred             HHHHHHcCC---------CCCHhHHHHHHHHHHh---cCCHHHHHHHHHHhhh-----CCC--------CCCHHHHHHHH
Q 043144          244 LDEMRNKGC---------IPDVVTYNVLVNGICK---EGRLDEAIKFLNDMPS-----YGC--------QPNVITHNIIL  298 (580)
Q Consensus       244 ~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-----~~~--------~~~~~~~~~ll  298 (580)
                      ...+.....         +.+...+..+...+..   .|++++|+.+|+++.+     ...        +.+...+..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence            111111100         1124445455555554   7888888888888766     211        12345666777


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHH
Q 043144          299 RSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMD  378 (580)
Q Consensus       299 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  378 (580)
                      ..+...|++++|...++.+.+..  |+...+..+...+...|++++|...++++.+.... +...+..+...+...|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence            77888888888888888887764  23667777888888888888888888887776433 5667777888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          379 RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR  458 (580)
Q Consensus       379 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  458 (580)
                      +|...++++.+..+. +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.
T Consensus       322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            888888888776433 45677777888888888888888888877654 3345677777888888888888888888876


Q ss_pred             HCCCC-CC----HHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          459 TKGLK-PD----TITYSSLVGGLSR---EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       459 ~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ..... ++    ...+..+...+..   .|++++|...++++.+..+. +..++..++.+|...|++++|...++++.+.
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR-SEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            54211 11    2367777888888   88888888888888765433 6677778888888888888888888888876

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2.9e-26  Score=234.24  Aligned_cols=444  Identities=10%  Similarity=0.008  Sum_probs=333.0

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144          119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTL  196 (580)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~  196 (580)
                      ...+...+..+.+.|++++|...|+++....  |++.+|..++.+|...|++++|+..|+++  ..|.+..+|..++.++
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence            3467778888999999999999999999875  58999999999999999999999999988  2345567899999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH---HHHhcCCHH
Q 043144          197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN---GICKEGRLD  273 (580)
Q Consensus       197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~  273 (580)
                      .+.|++++|...|+++...+. ++......++..+........+.+.+..+...+..|+...+.....   .........
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999998763 3444555555554444333333333332222211111111111100   001111111


Q ss_pred             HHHHHHHHhhhC------CCCCCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CCChhhHHH
Q 043144          274 EAIKFLNDMPSY------GCQPNVITHNIILRSMCS---TGRWMDAERLLAEMVL-----KGC--------SPSVVTFNI  331 (580)
Q Consensus       274 ~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~  331 (580)
                      .+...+......      ..+.+...+......+..   .|++++|...|+++.+     ...        +.+...+..
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (514)
T 2gw1_A          163 SMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEH  242 (514)
T ss_dssp             HHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHH
Confidence            112222111110      002234555555555554   8999999999999988     311        223567888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 043144          332 LINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK  411 (580)
Q Consensus       332 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  411 (580)
                      +...+...|++++|...++++.+....  ...+..+...+...|++++|...++++.+.... +..++..+...+...|+
T Consensus       243 ~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  319 (514)
T 2gw1_A          243 TGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQN  319 (514)
T ss_dssp             HHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCC
Confidence            899999999999999999999987544  888899999999999999999999999886433 56788999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144          412 VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHD  491 (580)
Q Consensus       412 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  491 (580)
                      +++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...+++
T Consensus       320 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~  397 (514)
T 2gw1_A          320 YDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDL  397 (514)
T ss_dssp             TTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999998876 3456788899999999999999999999998763 34677889999999999999999999999


Q ss_pred             HHhCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          492 LERLGVR-PN----VITYNSIMLGLCK---ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       492 ~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      +.+..+. ++    ...+..++.+|..   .|++++|...++++++.. +.+..++..++.+|...|++++|.+.++++.
T Consensus       398 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          398 AIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9764332 11    3488899999999   999999999999999874 6678899999999999999999999999999


Q ss_pred             hCCCCCch
Q 043144          564 SRGVVKKS  571 (580)
Q Consensus       564 ~~g~~~~~  571 (580)
                      +.++..+.
T Consensus       477 ~~~~~~~~  484 (514)
T 2gw1_A          477 DLARTMEE  484 (514)
T ss_dssp             HHCSSHHH
T ss_pred             HhccccHH
Confidence            98754433

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=1.8e-24  Score=222.31  Aligned_cols=433  Identities=14%  Similarity=0.087  Sum_probs=266.3

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+.+.|++++|+..|++++.. .|.+..++..++.+|.+.|++++|...|+++.+.+ |.+..++..++.++
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIEL-DPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            35677788888888888888888888876 45677888888888888888888888888888876 66778888888888


Q ss_pred             HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCCHhHHHH
Q 043144          165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKEC--YPDVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      ...|++++|+..|+.+...|+..  ...+..+...+....|...++.++....  .+........+..+....+.+.+..
T Consensus       104 ~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSLNGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS  181 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHhcCCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence            88888888888887554334322  2223445555556777777777765421  0111112233444555555555544


Q ss_pred             HHHHHHHcCCCCCHh-HHHHHHHHHHhc--------CCHHHHHHHHHHhhhCCCCCCH-------HHHHHHHHHHHhcCC
Q 043144          243 LLDEMRNKGCIPDVV-TYNVLVNGICKE--------GRLDEAIKFLNDMPSYGCQPNV-------ITHNIILRSMCSTGR  306 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~  306 (580)
                      .+......  .+... ....+...+...        |++++|..+|+++.+.. +.+.       .++..+...+...|+
T Consensus       182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~  258 (537)
T 3fp2_A          182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNN  258 (537)
T ss_dssp             TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhccc
Confidence            44333221  11111 233333333222        36677777777766543 2222       234555556666777


Q ss_pred             hHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          307 WMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEI  386 (580)
Q Consensus       307 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  386 (580)
                      +++|...++.+.+..  |+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++|+..+++
T Consensus       259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~  335 (537)
T 3fp2_A          259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK  335 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            777777777776653  34566666777777777777777777776665332 566667777777777777777777777


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC----
Q 043144          387 MVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL----  462 (580)
Q Consensus       387 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----  462 (580)
                      +.+..+. +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...    
T Consensus       336 a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  413 (537)
T 3fp2_A          336 AQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEK  413 (537)
T ss_dssp             HHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchh
Confidence            7665322 34566667777777777777777777766654 33455666667777777777777777777654310    


Q ss_pred             -CCCHHHHHHHHHHHHhC----------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          463 -KPDTITYSSLVGGLSRE----------GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       463 -~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                       ......+......+...          |++++|...|+++.+..+. +...+..++.+|...|++++|.+.++++++.
T Consensus       414 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          414 IHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             CSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence             01112233344555555          7777777777777655433 5666677777777777777777777777665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=2.9e-24  Score=215.48  Aligned_cols=386  Identities=11%  Similarity=0.056  Sum_probs=226.2

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh
Q 043144          137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLE  214 (580)
Q Consensus       137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  214 (580)
                      .+...+..+.... |.++..+..++..|.+.|++++|+.+|+++  ..+.+..+|..++.++...|++++|+..|+++++
T Consensus        10 ~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           10 GVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             --------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3344444444443 455666666677777777777777777665  2234556666666666666777777766666666


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH---hHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH
Q 043144          215 KECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV---VTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV  291 (580)
Q Consensus       215 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  291 (580)
                      .+ +.+...+..++..|.+.|++++|...|+.+.+... .+.   ..+..++..+...                      
T Consensus        89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~----------------------  144 (450)
T 2y4t_A           89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ----------------------  144 (450)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH----------------------
T ss_pred             cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH----------------------
Confidence            54 22455666666666666666666666666665421 123   4444443331100                      


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH
Q 043144          292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGF  371 (580)
Q Consensus       292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  371 (580)
                       .+..+...+...|++++|...|+.+.+.. +.+...+..++.+|...|++++|...|+++.+... .+..++..+...|
T Consensus       145 -~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~  221 (450)
T 2y4t_A          145 -RLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLY  221 (450)
T ss_dssp             -HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence             01112333555566666666666665543 33455566666666666666666666666655422 2455666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHH
Q 043144          372 CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTL------------LTALCKDGKVDVAVEILNQLSNKHCSPV-----LITY  434 (580)
Q Consensus       372 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------i~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~  434 (580)
                      ...|++++|+..|+++....+. +...+..+            ...+.+.|++++|...|+.+.+..  |+     ...|
T Consensus       222 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~  298 (450)
T 2y4t_A          222 YQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSK  298 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHH
Confidence            6666666666666666554221 22233322            677777888888888888877654  33     3467


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----
Q 043144          435 NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG----  510 (580)
Q Consensus       435 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----  510 (580)
                      ..+..++.+.|++++|...++++.+.. +.+...|..++.+|...|++++|...++++.+..+. +...+..+..+    
T Consensus       299 ~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~  376 (450)
T 2y4t_A          299 ERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN-DQQIREGLEKAQRLL  376 (450)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHh
Confidence            777788888888888888888877653 336777888888888888888888888888775543 55666666533    


Q ss_pred             --------HHhcC-----CHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHH
Q 043144          511 --------LCKAR-----QTYRAIDILADMVTRSCKPT-----------EATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       511 --------~~~~g-----~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~  556 (580)
                              |...|     +.+++.+.++++... +.||           ...+..+..+|...|+.+.+.
T Consensus       377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~  445 (450)
T 2y4t_A          377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK  445 (450)
T ss_dssp             HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH-SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred             hcccchhHHHHhCCCccCCHHHHHHHHHHHHHH-hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence                    33334     556777777763322 1222           236677777777777766543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=1.4e-24  Score=223.14  Aligned_cols=441  Identities=14%  Similarity=0.069  Sum_probs=341.5

Q ss_pred             hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHH
Q 043144          119 IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTL  196 (580)
Q Consensus       119 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~  196 (580)
                      ...+..++..+.+.|++++|...|+++.... |.++.++..++.+|.+.|++++|++.|+++  ..+.+..++..++.++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            4567888899999999999999999999887 678999999999999999999999999998  3345678899999999


Q ss_pred             HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC--CCCHhHHHHHHHHHHhcCCHHH
Q 043144          197 CDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC--IPDVVTYNVLVNGICKEGRLDE  274 (580)
Q Consensus       197 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~  274 (580)
                      ...|++++|+..|+ .+...  |+.  ....+..+...+...+|...++.+.....  .+........+..+....+.+.
T Consensus       104 ~~~g~~~~A~~~~~-~~~~~--~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (537)
T 3fp2_A          104 ESLGNFTDAMFDLS-VLSLN--GDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHL  178 (537)
T ss_dssp             HHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHH
T ss_pred             HHcCCHHHHHHHHH-HHhcC--CCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHH
Confidence            99999999999996 44332  222  12234455566677889999999865411  1111222344555667888888


Q ss_pred             HHHHHHHhhhCCCCCCHH-HHHHHHHHHH--------hcCChHHHHHHHHHHHHcCCCCCh-------hhHHHHHHHHHh
Q 043144          275 AIKFLNDMPSYGCQPNVI-THNIILRSMC--------STGRWMDAERLLAEMVLKGCSPSV-------VTFNILINFLCR  338 (580)
Q Consensus       275 A~~~~~~~~~~~~~~~~~-~~~~ll~~~~--------~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~  338 (580)
                      +...+......  .+... ....+...+.        ..+++++|..+++.+.+.. +.+.       .++..+...+..
T Consensus       179 ~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          179 EVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHh
Confidence            88777766543  23322 2233332222        2258999999999998764 2232       356777788899


Q ss_pred             cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144          339 KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI  418 (580)
Q Consensus       339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  418 (580)
                      .|++++|...++++.+.  .|+...+..+...+...|++++|...++++.+..+. +..++..+...+...|++++|...
T Consensus       256 ~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  332 (537)
T 3fp2_A          256 KNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKED  332 (537)
T ss_dssp             TTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999987  445788899999999999999999999999886433 677899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-
Q 043144          419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV-  497 (580)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-  497 (580)
                      ++++.+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+..+ 
T Consensus       333 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~  410 (537)
T 3fp2_A          333 FQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV  410 (537)
T ss_dssp             HHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence            99998866 3456788999999999999999999999998864 44677899999999999999999999999864321 


Q ss_pred             ----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          498 ----RPNVITYNSIMLGLCKA----------RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       498 ----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                          ......+..+..++...          |++++|...++++++.. +.+..++..++.+|...|++++|.+.++++.
T Consensus       411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  489 (537)
T 3fp2_A          411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSA  489 (537)
T ss_dssp             CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence                22344466677788888          99999999999999874 6778999999999999999999999999999


Q ss_pred             hCCCCCchhHH
Q 043144          564 SRGVVKKSSAE  574 (580)
Q Consensus       564 ~~g~~~~~~~~  574 (580)
                      +..+..+....
T Consensus       490 ~~~~~~~~~~~  500 (537)
T 3fp2_A          490 ILARTMDEKLQ  500 (537)
T ss_dssp             HHC--CHHHHH
T ss_pred             HhCCCcHHHHH
Confidence            98766555433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=4.6e-24  Score=213.99  Aligned_cols=388  Identities=14%  Similarity=0.077  Sum_probs=226.2

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 043144          100 LEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLER  179 (580)
Q Consensus       100 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  179 (580)
                      ...+...+..++.. .|.+...+..++..+.+.|++++|..+|+.+.+.. +.+..++..++.+|...|++++|+..|++
T Consensus         8 ~~~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~   85 (450)
T 2y4t_A            8 SSGVDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTK   85 (450)
T ss_dssp             ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            34555666666655 46677899999999999999999999999999875 67899999999999999999999999999


Q ss_pred             c--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-h---hhHHHHHHH------------HHhcCCHhHHH
Q 043144          180 M--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD-V---ITYTILIEA------------TCKESGVGQAM  241 (580)
Q Consensus       180 ~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~---~~~~~li~~------------~~~~g~~~~A~  241 (580)
                      +  ..+.+..++..++.+|.+.|++++|.+.|+++.+..  |+ .   ..+..++..            +...|++++|.
T Consensus        86 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~  163 (450)
T 2y4t_A           86 VIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAI  163 (450)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8  234567889999999999999999999999999865  43 3   556655444            45555555555


Q ss_pred             HHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 043144          242 KLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKG  321 (580)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  321 (580)
                      ..|+.+.+.. +.+..++..++.+|.+.|++++|+.+|+++.+.. +.+..+|..++..+...|++++|...|+.+.+..
T Consensus       164 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  241 (450)
T 2y4t_A          164 AFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD  241 (450)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            5555555442 1244455555555555555555555555554432 3344555555555555555555555555554432


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HH
Q 043144          322 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD----IV  397 (580)
Q Consensus       322 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~  397 (580)
                       +.+...+..+...              .         ....+..+...+...|++++|+..|+++.+..+. +    ..
T Consensus       242 -p~~~~~~~~~~~~--------------~---------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~  296 (450)
T 2y4t_A          242 -QDHKRCFAHYKQV--------------K---------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVR  296 (450)
T ss_dssp             -TTCHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHH
T ss_pred             -CChHHHHHHHHHH--------------H---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHH
Confidence             1122222222000              0         0000111255556666666666666666553211 1    23


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH---
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG---  474 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~---  474 (580)
                      .+..+..++.+.|++++|...++.+.+.. +.+...|..+..+|...|++++|...|+++.+.. +-+...+..+..   
T Consensus       297 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  374 (450)
T 2y4t_A          297 SKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQR  374 (450)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHH
Confidence            45556666666666666666666655443 2345566666666666666666666666666532 123344444432   


Q ss_pred             ---------HHHhCC-----CHHHHHHHHHH-HHhCCCC--CCH-------HHHHHHHHHHHhcCCHHHH
Q 043144          475 ---------GLSREG-----KVDEAIKLFHD-LERLGVR--PNV-------ITYNSIMLGLCKARQTYRA  520 (580)
Q Consensus       475 ---------~~~~~g-----~~~~A~~~~~~-~~~~~~~--~~~-------~~~~~l~~~~~~~g~~~~A  520 (580)
                               .|...|     +.+++.+.+++ ..+..+.  |+.       ..+..+..+|...++.+++
T Consensus       375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence                     233333     55677777776 3343221  221       2555666666666665543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=1.9e-20  Score=181.34  Aligned_cols=315  Identities=11%  Similarity=0.046  Sum_probs=167.6

Q ss_pred             hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHH
Q 043144          221 VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRS  300 (580)
Q Consensus       221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~  300 (580)
                      +..+..+...+...|++++|...|+.+.+..+ .+...+..+...+...|++++|+..|+++.+.. +.+...+..+...
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            45666777777788888888888888777642 356677777777788888888888887777653 3456677777777


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHH
Q 043144          301 MCSTGRWMDAERLLAEMVLKGCS---PSVVTFNIL------------INFLCRKGLLGRAIDILEKMPKHGCTPNSLSYN  365 (580)
Q Consensus       301 ~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  365 (580)
                      +...|++++|...++.+.+.. +   .+...+..+            ...+...|++++|...++++.+..+. +...+.
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  158 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRE  158 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHH
Confidence            777788888888887777653 2   233333333            34444555555555555555443222 344444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 043144          366 PVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG  445 (580)
Q Consensus       366 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  445 (580)
                      .+...+...|++++|...++++.+..+ .+..++..+...+...|++++|...++...+.. +.+...+..+...     
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~-----  231 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQV-----  231 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-----
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHH-----
Confidence            455555555555555555555544321 133444455555555555555555555544433 1112211111000     


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 043144          446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNV----ITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~  521 (580)
                                  .      .......+...+...|++++|...++++.+..+. +.    ..+..++.++...|++++|.
T Consensus       232 ------------~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          232 ------------K------KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             ------------H------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ------------H------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence                        0      0000011233445555555555555555443322 21    12333445555555555555


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      ..++++++.. +.+..+|..++.++...|++++|.+.++++.+..
T Consensus       293 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  336 (359)
T 3ieg_A          293 RICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN  336 (359)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            5555555442 3345555555555555555555555555555544

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.91  E-value=2.2e-20  Score=181.00  Aligned_cols=331  Identities=12%  Similarity=0.063  Sum_probs=250.4

Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 043144          185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVN  264 (580)
Q Consensus       185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  264 (580)
                      |+..+..++..+...|++++|+..|+++++.. +.+..++..+...+...|++++|...++.+.+... .+...+..+..
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM-DFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            35678889999999999999999999999875 34678899999999999999999999999998742 36788999999


Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCC---CCHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144          265 GICKEGRLDEAIKFLNDMPSYGCQ---PNVITHNII------------LRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF  329 (580)
Q Consensus       265 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  329 (580)
                      .+...|++++|...|+++.+.. +   .+...+..+            ...+...|++++|...++.+.+.. +.+...+
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  157 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR  157 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence            9999999999999999998764 2   344555554            578889999999999999999874 4577889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043144          330 NILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD  409 (580)
Q Consensus       330 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  409 (580)
                      ..+...+...|++++|...++++.+..+. +...+..+...+...|++++|...+++..+..+. +...+..+       
T Consensus       158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~-------  228 (359)
T 3ieg_A          158 ELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHY-------  228 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHH-------
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHH-------
Confidence            99999999999999999999999987543 7888999999999999999999999999876332 22222211       


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhCCCHHHH
Q 043144          410 GKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT----ITYSSLVGGLSREGKVDEA  485 (580)
Q Consensus       410 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~g~~~~A  485 (580)
                                ..+.      .......+...+...|++++|...++++.+.. +.+.    ..+..+...+...|++++|
T Consensus       229 ----------~~~~------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          229 ----------KQVK------KLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             ----------HHHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ----------HHHH------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence                      1111      01222334555666777777777777766543 1122    2244466677777777777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      ...++++.+..+. +..++..++.+|...|++++|...++++++.. |.+...+..+..+..
T Consensus       292 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          292 IRICSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence            7777777765432 56677777777777777777777777777652 444566666655543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=3.2e-19  Score=180.40  Aligned_cols=364  Identities=13%  Similarity=0.066  Sum_probs=232.5

Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 043144          103 GFKFLESMVYHGDIPDIIPCTSLIRGFCK----VGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNAL  174 (580)
Q Consensus       103 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  174 (580)
                      ++..+......|   +...+..+...|..    .+++++|..+|++..+.+   ++..+..|+..|..    .+++++|+
T Consensus        26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~   99 (490)
T 2xm6_A           26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV   99 (490)
T ss_dssp             CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            455566555543   66677777777777    788888888888887764   56677778888887    78888888


Q ss_pred             HHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHH
Q 043144          175 QVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK----ESGVGQAMKLLDE  246 (580)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~  246 (580)
                      +.|++.-...+...+..|...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|.+.|+.
T Consensus       100 ~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~  176 (490)
T 2xm6_A          100 IWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSK  176 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            888877223456677777777777    677888888888777765   55666667777766    6677777777777


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHH
Q 043144          247 MRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS----TGRWMDAERLLAEMV  318 (580)
Q Consensus       247 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~  318 (580)
                      ..+.+   +...+..+...|..    .++.++|..+|++..+.+   +...+..+...|..    .+++++|..+|+...
T Consensus       177 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~  250 (490)
T 2xm6_A          177 AAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSA  250 (490)
T ss_dssp             HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            77653   56667777777766    677777777777776643   45556666666654    566777777777766


Q ss_pred             HcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 043144          319 LKGCSPSVVTFNILINFLCR----KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE-----KKMDRAIEYLEIMVS  389 (580)
Q Consensus       319 ~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~  389 (580)
                      +.+   +...+..+..+|..    .++.++|...|++..+.|   ++..+..+...|...     +++++|+.+|++..+
T Consensus       251 ~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~  324 (490)
T 2xm6_A          251 EQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE  324 (490)
T ss_dssp             TTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh
Confidence            553   34455556666655    666666666666665543   344555555555554     566666666666665


Q ss_pred             CCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCC
Q 043144          390 RGCYPDIVTYNTLLTALCKDG---KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKLLEEMRTKGL  462 (580)
Q Consensus       390 ~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~  462 (580)
                      .+   +...+..+...|...|   ++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+ 
T Consensus       325 ~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~-  397 (490)
T 2xm6_A          325 QG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG-  397 (490)
T ss_dssp             TT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred             cC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-
Confidence            42   3344555555555544   5556666666655542   34455555555555    555666666666655543 


Q ss_pred             CCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 043144          463 KPDTITYSSLVGGLSR----EGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  496 (580)
                        +...+..|...|..    .+++++|...|+++.+.+
T Consensus       398 --~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          398 --LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence              34445555555554    555666666666655444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.90  E-value=8.9e-19  Score=177.14  Aligned_cols=365  Identities=11%  Similarity=0.027  Sum_probs=292.2

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHH
Q 043144          137 KATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNALQVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEV  208 (580)
Q Consensus       137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  208 (580)
                      .+...+....+.|   ++..+..++..|..    .+++++|+..|++.-...+...+..|...|..    .+++++|.+.
T Consensus        25 ~~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  101 (490)
T 2xm6_A           25 VNLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW  101 (490)
T ss_dssp             CCHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            3456666665544   77888888888888    78999999999987223567788888998988    8899999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHH
Q 043144          209 LHKQLEKECYPDVITYTILIEATCK----ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLN  280 (580)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~  280 (580)
                      |++..+.+   +...+..+...|..    .+++++|...|+...+.|   +...+..|...|..    .+++++|+++|+
T Consensus       102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  175 (490)
T 2xm6_A          102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS  175 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            99988875   66777888888887    789999999999988865   67778888888887    788999999999


Q ss_pred             HhhhCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHh
Q 043144          281 DMPSYGCQPNVITHNIILRSMCS----TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR----KGLLGRAIDILEKM  352 (580)
Q Consensus       281 ~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~  352 (580)
                      +..+.+   +...+..+...|..    .+++++|.++|+...+.+   +...+..+..+|..    .+++++|...|++.
T Consensus       176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a  249 (490)
T 2xm6_A          176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQS  249 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            888764   67778888888887    788999999999888865   56677778888876    78899999999888


Q ss_pred             hhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----CChHHHHHHHHHHH
Q 043144          353 PKHGCTPNSLSYNPVLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD-----GKVDVAVEILNQLS  423 (580)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~  423 (580)
                      .+.+   +...+..+...|..    .+++++|+.+|++..+.|   +...+..+...|...     +++++|...|++..
T Consensus       250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~  323 (490)
T 2xm6_A          250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA  323 (490)
T ss_dssp             HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred             HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence            7763   55667777777777    788999999999887653   556777778888877     88999999998888


Q ss_pred             hCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCC
Q 043144          424 NKHCSPVLITYNTVIDGLSKVG---KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----EGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       424 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  496 (580)
                      +.+   +...+..+...|...|   ++++|.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.+
T Consensus       324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            764   3556777777777656   7888999998888764   67778888888887    788999999999988764


Q ss_pred             CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 043144          497 VRPNVITYNSIMLGLCK----ARQTYRAIDILADMVTRS  531 (580)
Q Consensus       497 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  531 (580)
                         +...+..|...|..    .+++++|...|++..+.+
T Consensus       398 ---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~  433 (490)
T 2xm6_A          398 ---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND  433 (490)
T ss_dssp             ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred             ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence               56777888888887    788999999999988775

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=3e-19  Score=182.49  Aligned_cols=431  Identities=12%  Similarity=0.027  Sum_probs=282.7

Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC
Q 043144          107 LESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPD  185 (580)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~  185 (580)
                      |++.+.. .|.+...|..++. +.+.|++++|..+|+++.... |.+...|..++..+.+.|++++|..+|+++ ...|+
T Consensus         2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~   78 (530)
T 2ooe_A            2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLH   78 (530)
T ss_dssp             HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCC
T ss_pred             hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Confidence            5566555 4567788988888 478899999999999998865 677888999999999999999999999998 54567


Q ss_pred             cchHHHHHHHH-HhcCChhHHHH----HHHHHHhC-CCC-CChhhHHHHHHHHHh---------cCCHhHHHHHHHHHHH
Q 043144          186 VVTYNTILRTL-CDSGKLNLAME----VLHKQLEK-ECY-PDVITYTILIEATCK---------ESGVGQAMKLLDEMRN  249 (580)
Q Consensus       186 ~~~~~~l~~~~-~~~g~~~~A~~----~~~~~~~~-~~~-~~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~~  249 (580)
                      ...|...+... ...|+.+.|.+    +|++++.. |.. ++...|...+....+         .|++++|..+|++.++
T Consensus        79 ~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~  158 (530)
T 2ooe_A           79 IDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCV  158 (530)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHh
Confidence            77787777533 45677777765    66666543 333 345677777766554         6788888888888876


Q ss_pred             cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH------HHcC--
Q 043144          250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEM------VLKG--  321 (580)
Q Consensus       250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~------~~~~--  321 (580)
                      ....+....|..........|. ..+..++.                     ...+++..|..++..+      .+..  
T Consensus       159 ~P~~~~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~  216 (530)
T 2ooe_A          159 NPMINIEQLWRDYNKYEEGINI-HLAKKMIE---------------------DRSRDYMNARRVAKEYETVMKGLDRNAP  216 (530)
T ss_dssp             SCCTTHHHHHHHHHHHHHHHCH-HHHHHHHH---------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSC
T ss_pred             chhhhHHHHHHHHHHHHHhhch-hHHHHHHH---------------------HhhHHHHHHHHHHHHHHHHHHHhccccc
Confidence            3111112233332221111110 00111110                     0123344555544442      1111  


Q ss_pred             -CCCC--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh-------cCCH
Q 043144          322 -CSPS--------VVTFNILINFLCRK----GLL----GRAIDILEKMPKHGCTPNSLSYNPVLHGFCK-------EKKM  377 (580)
Q Consensus       322 -~~~~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~  377 (580)
                       ++|+        ...|...+......    ++.    +.+..+|++.+...+ .++..|..++..+.+       .|++
T Consensus       217 ~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~  295 (530)
T 2ooe_A          217 SVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDM  295 (530)
T ss_dssp             CCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             cCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccch
Confidence             1222        12344443332221    222    366677877777532 367777777777765       6777


Q ss_pred             H-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhCCCHH
Q 043144          378 D-------RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV--LITYNTVIDGLSKVGKTE  448 (580)
Q Consensus       378 ~-------~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~  448 (580)
                      +       +|..+|++.++.-.+.+...|..++..+.+.|++++|..+|+++.+..  |+  ...|...+..+.+.|+++
T Consensus       296 ~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~  373 (530)
T 2ooe_A          296 NNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIK  373 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHH
Confidence            6       788888888752122246688888888888888888888888888754  43  247888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGG-LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      +|..+|++..+.. +.+...|...+.. +...|++++|..+|+++.+..+. +...|..++..+.+.|+.++|..+|+++
T Consensus       374 ~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          374 SGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             HHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            8888888888653 2223333322222 33588899999999988765433 6788888888888889999999999998


Q ss_pred             HHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          528 VTRS-CKP--TEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       528 ~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      +..+ ..|  ....|...+......|+.+.+.++.+++.+.-+
T Consensus       452 l~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          452 LTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            8763 222  245788888888888999999988888877653

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.89  E-value=5.9e-19  Score=180.34  Aligned_cols=415  Identities=11%  Similarity=0.001  Sum_probs=298.5

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      +...|..++. +.+.|++++|..+|++++.. .|.+...|..++..+.+.|++++|..+|++++...  |++..|..++.
T Consensus        12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~   87 (530)
T 2ooe_A           12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS   87 (530)
T ss_dssp             CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence            3357888888 57899999999999999987 67788899999999999999999999999999875  57888888876


Q ss_pred             HH-HhcCChhHHHH----HHHHc----CCC-CCcchHHHHHHHHHh---------cCChhHHHHHHHHHHhCCCCCCh--
Q 043144          163 GY-CRLGEIDNALQ----VLERM----SVA-PDVVTYNTILRTLCD---------SGKLNLAMEVLHKQLEKECYPDV--  221 (580)
Q Consensus       163 ~~-~~~g~~~~A~~----~~~~~----~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~--  221 (580)
                      .. ...|++++|.+    +|++.    +.. ++...|...+....+         .|+++.|..+|+++++.   |..  
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~~  164 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMINI  164 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTTH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhhH
Confidence            44 45688887766    66654    433 345678888887665         78999999999999983   322  


Q ss_pred             -hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh------hhCC---CCCC-
Q 043144          222 -ITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM------PSYG---CQPN-  290 (580)
Q Consensus       222 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~------~~~~---~~~~-  290 (580)
                       ..|..........|.                    .+...++.  ...++++.|..++.+.      .+..   ++|+ 
T Consensus       165 ~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~  222 (530)
T 2ooe_A          165 EQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQN  222 (530)
T ss_dssp             HHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC-
T ss_pred             HHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCC
Confidence             233222221111110                    01111111  1234455565555542      1111   2333 


Q ss_pred             -------HHHHHHHHHHHHhc----CCh----HHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-------cCCHH-----
Q 043144          291 -------VITHNIILRSMCST----GRW----MDAERLLAEMVLKGCSPSVVTFNILINFLCR-------KGLLG-----  343 (580)
Q Consensus       291 -------~~~~~~ll~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-----  343 (580)
                             ...|...+......    ++.    ..+..+|++++... +.+...|..++..+.+       .|+++     
T Consensus       223 ~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~  301 (530)
T 2ooe_A          223 TPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLF  301 (530)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhh
Confidence                   23455544333222    222    36778888888763 5577888888888875       68877     


Q ss_pred             --HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHH
Q 043144          344 --RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDI-VTYNTLLTALCKDGKVDVAVEILN  420 (580)
Q Consensus       344 --~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~  420 (580)
                        +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++++..+. +. ..|..++..+.+.|++++|..+|+
T Consensus       302 ~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          302 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             HHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence              89999999987322346788999999999999999999999999986322 33 488889988999999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-C
Q 043144          421 QLSNKHCSPVLITYNTVIDG-LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV-R  498 (580)
Q Consensus       421 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~  498 (580)
                      +..+.. +.+...|...+.. +...|++++|..+|++.++.. +.+...|..++..+.+.|+.++|..+|+++...++ .
T Consensus       381 ~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          381 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            998764 2223333332222 336899999999999998763 34678899999999999999999999999987643 2


Q ss_pred             C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          499 P--NVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       499 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      |  ....|...+......|+.+.+..+.+++.+.
T Consensus       459 ~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          459 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             GGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2  3558888888888899999999999998865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=4.6e-20  Score=176.49  Aligned_cols=292  Identities=13%  Similarity=-0.012  Sum_probs=189.5

Q ss_pred             CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043144          255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILIN  334 (580)
Q Consensus       255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  334 (580)
                      +...+..++..+...|++++|+.+|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence            44455555556666666666666666655443 3333444455555666666666666666666543 334555666666


Q ss_pred             HHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043144          335 FLCRKG-LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD  413 (580)
Q Consensus       335 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  413 (580)
                      .+...| ++++|...|+++.+.... +...|..+...+...|++++|+..++++.+.... +...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHH
Confidence            666666 666666666666655322 4556666666777777777777777766655322 3345555666777777777


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKG--------LKPDTITYSSLVGGLSREGKVDEA  485 (580)
Q Consensus       414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A  485 (580)
                      +|...++++.+.. +.+...+..+...+...|++++|...++++.+..        .+.+..++..+...+...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            7777777776654 3446667777777777777777777777776531        123356777788888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI-AYEGLAK  553 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  553 (580)
                      ...++++.+..+. +...+..++.+|...|++++|.+.++++++.. +.+...+..+..++ ...|+.+
T Consensus       256 ~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          256 LDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            8888888765543 66777888888888888888888888887653 55677777777777 4555543

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.88  E-value=1.4e-19  Score=173.17  Aligned_cols=287  Identities=11%  Similarity=0.012  Sum_probs=149.2

Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144          223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC  302 (580)
Q Consensus       223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  302 (580)
                      .+..++..+...|++++|.++|+++.+... .+...+..++..+...|++++|..+++++.+.. +.+...|..+...+.
T Consensus        24 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL  101 (330)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence            333444444444444444444444443321 123333334444444444444444444444322 223344444444444


Q ss_pred             hcC-ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144          303 STG-RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI  381 (580)
Q Consensus       303 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  381 (580)
                      ..| ++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.... +...+..+...+...|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~  179 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAE  179 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHH
Confidence            444 4444444444444432 223344444555555555555555555554443222 3334444555555555555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144          382 EYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH--------CSPVLITYNTVIDGLSKVGKTEQAMKL  453 (580)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~  453 (580)
                      ..++++.+..+. +...+..+...+...|++++|...++++.+..        .+.....+..+...+...|++++|...
T Consensus       180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  258 (330)
T 3hym_B          180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY  258 (330)
T ss_dssp             HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            555555544221 34455555555566666666666555554321        123345667777777777777777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCC
Q 043144          454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL-CKARQ  516 (580)
Q Consensus       454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~  516 (580)
                      +++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..+..++ ...|+
T Consensus       259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRD-DTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSC-CHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCC-chHHHHHHHHHHHHHhCc
Confidence            77776653 335566777777777777777777777777765433 566666666666 34444

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.85  E-value=4.5e-17  Score=172.11  Aligned_cols=417  Identities=13%  Similarity=0.121  Sum_probs=305.7

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGD--IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ....+..|...|.+.+|++++++++..+.  ..+....+.++.+..+. +..+..+...+....    +   ...++..+
T Consensus       988 Vs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Ia 1059 (1630)
T 1xi4_A          988 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APDIANIA 1059 (1630)
T ss_pred             hHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHH
Confidence            34567888899999999999999985422  14556777777777777 556666666655422    1   33477888


Q ss_pred             HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      ...|.+++|..+|++.+.  .....+.+   +...+++++|.++.++.      -+..+|..+..++...|++++|.+.|
T Consensus      1060 i~lglyEEAf~IYkKa~~--~~~A~~VL---ie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsY 1128 (1630)
T 1xi4_A         1060 ISNELFEEAFAIFRKFDV--NTSAVQVL---IEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSY 1128 (1630)
T ss_pred             HhCCCHHHHHHHHHHcCC--HHHHHHHH---HHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            889999999999999741  22222223   22778899999988765      24678889999999999999999999


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSP  324 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  324 (580)
                      .+.      .|...|..++..+.+.|++++|.+.|....+..  ++....+.++.+|++.+++++...+    +.   .+
T Consensus      1129 iKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~---~~ 1193 (1630)
T 1xi4_A         1129 IKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN---GP 1193 (1630)
T ss_pred             Hhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh---CC
Confidence            664      378888889999999999999999998877653  3333334588889999888854433    22   34


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLT  404 (580)
Q Consensus       325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~  404 (580)
                      +...+..+...|...|++++|...|..+         ..|..+...+.+.|++++|++.+++.      .+..+|..+..
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ 1258 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 1258 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHH
Confidence            5567778999999999999999999874         37899999999999999999999876      36688999999


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--CCCH
Q 043144          405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR--EGKV  482 (580)
Q Consensus       405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g~~  482 (580)
                      +|...|++..|......+     ..++..+..++..|...|.+++|+.+++..+... +-....|.-+...+++  -+++
T Consensus      1259 acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1259 ACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHH
Confidence            999999999998876543     2446667789999999999999999998887553 3344566556655554  4456


Q ss_pred             HHHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHH-------------HHHHHcCCCCCHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGV----RPNVITYNSIMLGLCKARQTYRAIDIL-------------ADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      .++.++|..-.....    --+...|..++..|.+.|+++.|....             ++.+.  -..++..|...+..
T Consensus      1333 mEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~F 1410 (1630)
T 1xi4_A         1333 REHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQF 1410 (1630)
T ss_pred             HHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHH
Confidence            666666664432110    125677999999999999999998432             22221  24567778777777


Q ss_pred             HHhcC---------------CHHHHHHHHH
Q 043144          546 IAYEG---------------LAKEALDLLN  560 (580)
Q Consensus       546 ~~~~g---------------~~~~A~~~~~  560 (580)
                      |...+               +.+.+.++++
T Consensus      1411 yl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A         1411 YLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred             HHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence            77666               6666666665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=2.1e-19  Score=174.86  Aligned_cols=264  Identities=11%  Similarity=0.014  Sum_probs=177.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh
Q 043144          294 HNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK  373 (580)
Q Consensus       294 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  373 (580)
                      +..+...+...|++++|...|+++++.. +.+...+..+..++...|++++|...|+++.+..+. +..++..+...+..
T Consensus        67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~  144 (368)
T 1fch_A           67 PFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTN  144 (368)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHH
Confidence            4444444555555555555555554442 223444445555555555555555555555444222 44445555555555


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHH---------------HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 043144          374 EKKMDRAIEYLEIMVSRGCYPDIV---------------TYNTLLTALCKDGKVDVAVEILNQLSNKHCSP-VLITYNTV  437 (580)
Q Consensus       374 ~~~~~~A~~~~~~~~~~~~~~~~~---------------~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l  437 (580)
                      .|++++|+..++++....+.....               .+..+...+ ..|++++|...++++.+..... +..++..+
T Consensus       145 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l  223 (368)
T 1fch_A          145 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGL  223 (368)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHH
Confidence            555555555555554432211000               111233333 7888999999999888765221 47888889


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144          438 IDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT  517 (580)
Q Consensus       438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  517 (580)
                      ...|...|++++|...|+++.... +.+..++..+...+...|++++|...++++.+..+. +...+..++.+|...|++
T Consensus       224 ~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~  301 (368)
T 1fch_A          224 GVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAH  301 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCH
Confidence            999999999999999999988763 446788999999999999999999999999876543 678889999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          518 YRAIDILADMVTRSCKPT-----------EATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       518 ~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      ++|...++++++.. +.+           ..+|..++.+|...|++++|..++++..
T Consensus       302 ~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  357 (368)
T 1fch_A          302 REAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL  357 (368)
T ss_dssp             HHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence            99999999988652 222           6889999999999999999998877543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.1e-18  Score=172.61  Aligned_cols=392  Identities=13%  Similarity=-0.000  Sum_probs=223.5

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHc-----------CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC----
Q 043144          152 PDVITYNVLISGYCRLGEIDNALQVLERM-----------SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE----  216 (580)
Q Consensus       152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----  216 (580)
                      .....|+.|+..+...|++++|++.|++.           ..+....+|+.++.+|...|++++|...++++.+..    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34556788888888888888888887765           112234567778888888888888888777765421    


Q ss_pred             --CC-CChhhHHHHHHHHHh--cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHH---HhcCCHHHHHHHHHHhhhCCCC
Q 043144          217 --CY-PDVITYTILIEATCK--ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGI---CKEGRLDEAIKFLNDMPSYGCQ  288 (580)
Q Consensus       217 --~~-~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~  288 (580)
                        .. ....++.....++..  .+++++|+..|++..+..+. ++..+..+..++   ...++.++|++.|++..+.+ +
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-P  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-S
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-C
Confidence              00 123344444444443  34577777777777765322 444554444442   34466667777777766543 3


Q ss_pred             CCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH
Q 043144          289 PNVITHNIILRSMCS----TGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY  364 (580)
Q Consensus       289 ~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  364 (580)
                      .+...+..+...+..    .+++++|.+.+++..... +.+..++..+...|...|++++|...+++..+..+. +..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence            344555554444433    345667777777766653 345566667777777777777777777777665332 44555


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 043144          365 NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKV  444 (580)
Q Consensus       365 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  444 (580)
                      ..+...|...+....         ...       ...........+..+.|...++...+.. +.+...+..+...|...
T Consensus       285 ~~lg~~y~~~~~~~~---------~~~-------~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~  347 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVM---------NLR-------ENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALA  347 (472)
T ss_dssp             HHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh---------hHH-------HHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHh
Confidence            555544432111100         000       0000001111234577888888887765 34466788899999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          445 GKTEQAMKLLEEMRTKGLKPDTI--TYSSLVG-GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      |++++|...|++.++....+...  .+..+.. .....|++++|+..|+++.+..+  +.....         +....+.
T Consensus       348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~~---------~~~~~l~  416 (472)
T 4g1t_A          348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREKE---------KMKDKLQ  416 (472)
T ss_dssp             TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHHH---------HHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHHH---------HHHHHHH
Confidence            99999999999998865433221  2223332 34578999999999999988654  322221         2234455


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchhHHHH
Q 043144          522 DILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSSAEQV  576 (580)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~  576 (580)
                      +++++.+... |.+..+|..++.+|...|++++|.+.++++++.|...++..+|+
T Consensus       417 ~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          417 KIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            6666666654 67788999999999999999999999999999988777766654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.85  E-value=1.6e-19  Score=175.73  Aligned_cols=302  Identities=11%  Similarity=-0.058  Sum_probs=161.8

Q ss_pred             HHHcCChHHHHH-HHHHHHhCCCC-C--ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           94 LVRNGELEEGFK-FLESMVYHGDI-P--DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        94 ~~~~g~~~~A~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      +.-.|++++|+. .|++++..... |  +...+..++..+.+.|++++|...|+++.+.. +.+..++..++.+|...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            444577888887 77766554211 1  34567778888888888888888888888776 5677788888888888888


Q ss_pred             hhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHH
Q 043144          170 IDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEM  247 (580)
Q Consensus       170 ~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  247 (580)
                      +++|+..|+++  ..+.+..++..++..+...|++++|...+++++..... +...+..+...       .       ..
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~-------~~  178 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------A-------GG  178 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----------------------
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------h-------hh
Confidence            88888888877  22446677888888888888888888888888776422 22222111000       0       00


Q ss_pred             HHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144          248 RNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQP--NVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS  325 (580)
Q Consensus       248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  325 (580)
                      .    . ....+..+...+ ..|++++|+..|+++.+.. +.  +..++..+...+...|++++|...++++.+.. +.+
T Consensus       179 ~----~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~  250 (368)
T 1fch_A          179 A----G-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PND  250 (368)
T ss_dssp             ------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             h----c-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCC
Confidence            0    0 000011111122 4455555555555544432 11  34445555555555555555555555554432 223


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----------C
Q 043144          326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP----------D  395 (580)
Q Consensus       326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----------~  395 (580)
                      ...+..+...+...|++++|...|+++.+..+ .+...+..+...|.+.|++++|...|+++.+..+..          .
T Consensus       251 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  329 (368)
T 1fch_A          251 YLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS  329 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchh
Confidence            44555555555555555555555555554422 234455555555555555555555555554421110          1


Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILN  420 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~  420 (580)
                      ..+|..+..++...|+.++|..++.
T Consensus       330 ~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          330 ENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             HHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             hHHHHHHHHHHHHhCChHhHHHhHH
Confidence            3456666666666666666655554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=4.1e-16  Score=164.92  Aligned_cols=380  Identities=13%  Similarity=0.123  Sum_probs=296.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHh
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSG--AVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCD  198 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~  198 (580)
                      -....+.+|...|.+.+|+++++++.-.+  +..+....+.++.+..+. +..+..+...+.+ .   .....++..+..
T Consensus       987 eVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd-~---~d~~eIA~Iai~ 1061 (1630)
T 1xi4_A          987 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD-N---YDAPDIANIAIS 1061 (1630)
T ss_pred             HhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh-h---ccHHHHHHHHHh
Confidence            34566788899999999999999998432  113456667777776666 6677777777663 1   225568899999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144          199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF  278 (580)
Q Consensus       199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  278 (580)
                      .|.+++|..+|++...     .....+.++   -..+++++|.++.++..      +..+|..+..++.+.|++++|++.
T Consensus      1062 lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIds 1127 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDS 1127 (1630)
T ss_pred             CCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHH
Confidence            9999999999998621     222223332   27789999999988652      588999999999999999999999


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 043144          279 LNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT  358 (580)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  358 (580)
                      |.+.      .|...|..++.++.+.|++++|.+++....+..  +++...+.++.+|++.+++++.....    +   .
T Consensus      1128 YiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~ 1192 (1630)
T 1xi4_A         1128 YIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---G 1192 (1630)
T ss_pred             HHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---C
Confidence            9774      377788999999999999999999999888764  34444456999999999988644442    2   3


Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVI  438 (580)
Q Consensus       359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  438 (580)
                      ++...|..+...|...|++++|..+|...         ..|..+..++.+.|+++.|.+.+++.      .+..+|..+.
T Consensus      1193 ~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~ 1257 (1630)
T 1xi4_A         1193 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVC 1257 (1630)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHH
Confidence            46677788999999999999999999985         37899999999999999999999887      3468899999


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--C
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR--Q  516 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~  516 (580)
                      .+|...|++..|..+...+     ..++..+..++..|.+.|.+++|+.+++.....+ +-+...|.-|..+|.+.+  +
T Consensus      1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A         1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred             HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHH
Confidence            9999999999998887643     3466778899999999999999999999988765 336778877877777643  4


Q ss_pred             HHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 043144          517 TYRAIDILADMVTRSCKP------TEATYTILIEGIAYEGLAKEALD  557 (580)
Q Consensus       517 ~~~A~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~  557 (580)
                      ..++.+.|..-.  ++++      +...|..++-.|.+.|+++.|..
T Consensus      1332 lmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1332 MREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            555555554333  2333      46789999999999999999984

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=2.4e-19  Score=174.19  Aligned_cols=266  Identities=8%  Similarity=-0.012  Sum_probs=204.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 043144          290 NVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLH  369 (580)
Q Consensus       290 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  369 (580)
                      +...+..+...+...|++++|...|+.+++.. +.+..++..+..+|...|++++|+..|+++.+..+. +..++..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence            34456777777778888888888888877764 446677778888888888888888888887776432 5677788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CCHHHHHHH
Q 043144          370 GFCKEKKMDRAIEYLEIMVSRGCYPDI-----------VTYNTLLTALCKDGKVDVAVEILNQLSNKHCS-PVLITYNTV  437 (580)
Q Consensus       370 ~~~~~~~~~~A~~~~~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l  437 (580)
                      .|...|++++|+..++++.+..  |+.           ..+..+...+...|++++|...++++.+.... ++..++..+
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            8888888888888888877642  221           23344577888999999999999999877622 157889999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144          438 IDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT  517 (580)
Q Consensus       438 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  517 (580)
                      ...|...|++++|...|+++.+.. +.+..+|..+..+|...|++++|...|+++.+..+. +..++..++.+|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCH
Confidence            999999999999999999998764 446889999999999999999999999999876544 688899999999999999


Q ss_pred             HHHHHHHHHHHHcCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          518 YRAIDILADMVTRSC---K--------PTEATYTILIEGIAYEGLAKEALDLLNQ  561 (580)
Q Consensus       518 ~~A~~~~~~~~~~~~---~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~  561 (580)
                      ++|...++++++..-   .        .+..+|..+..++...|+.+.+.++.++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999886420   0        1357899999999999999998887665

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.83  E-value=6.3e-18  Score=170.39  Aligned_cols=382  Identities=11%  Similarity=-0.043  Sum_probs=252.4

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-------C
Q 043144          117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDS--------GAVPDVITYNVLISGYCRLGEIDNALQVLERM-------S  181 (580)
Q Consensus       117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~  181 (580)
                      .....|+.+...+...|++++|++.|++..+.        ..+....+|+.++.+|...|++++|...++++       .
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34567899999999999999999999987542        12345678999999999999999999998876       1


Q ss_pred             C--CC-CcchHHHHHHHHHhc--CChhHHHHHHHHHHhCCCCCChhhHHHHHHH---HHhcCCHhHHHHHHHHHHHcCCC
Q 043144          182 V--AP-DVVTYNTILRTLCDS--GKLNLAMEVLHKQLEKECYPDVITYTILIEA---TCKESGVGQAMKLLDEMRNKGCI  253 (580)
Q Consensus       182 ~--~~-~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~---~~~~g~~~~A~~~~~~~~~~~~~  253 (580)
                      .  .+ ...++..++.++...  +++++|++.|+++++.. |.+...+..+...   +...++.++|++.+++..+..+ 
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-  206 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-  206 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-
Confidence            1  11 234566666666654  57999999999999875 2245555555554   3456888999999999988743 


Q ss_pred             CCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhH
Q 043144          254 PDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTF  329 (580)
Q Consensus       254 ~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  329 (580)
                      .+..++..+...+..    .|++++|..++++..... +.+...+..+...+...|++++|...++++.+.. +.+..++
T Consensus       207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  284 (472)
T 4g1t_A          207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLH  284 (472)
T ss_dssp             SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHH
Confidence            256666666655544    567889999999987764 5677889999999999999999999999999874 4456677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043144          330 NILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD  409 (580)
Q Consensus       330 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  409 (580)
                      ..+..+|...+....+.      ..          ..........+.++.|...+++..+..+. +..++..+...+...
T Consensus       285 ~~lg~~y~~~~~~~~~~------~~----------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~  347 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMNL------RE----------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALA  347 (472)
T ss_dssp             HHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhH------HH----------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHh
Confidence            77776664321111100      00          00011111123457788888887765322 344677888889999


Q ss_pred             CChHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144          410 GKVDVAVEILNQLSNKHCSPVL--ITYNTVID-GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI  486 (580)
Q Consensus       410 g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  486 (580)
                      |++++|...|++..+....+..  ..+..+.. .+...|++++|+..|++.++.  .|+......         ....+.
T Consensus       348 ~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~  416 (472)
T 4g1t_A          348 DQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQ  416 (472)
T ss_dssp             TCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHH
Confidence            9999999999988876533322  12222322 234778999999999998875  444332221         234455


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 043144          487 KLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS  531 (580)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  531 (580)
                      ++++...+.++. +..+|..++.+|...|++++|++.|+++++.+
T Consensus       417 ~~~~~~l~~~p~-~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~  460 (472)
T 4g1t_A          417 KIAKMRLSKNGA-DSEALHVLAFLQELNEKMQQADEDSERGLESG  460 (472)
T ss_dssp             HHHHHHHHHCC--CTTHHHHHHHHHHHHHHCC-------------
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            666666655543 67789999999999999999999999998764

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.83  E-value=1.1e-18  Score=169.63  Aligned_cols=263  Identities=13%  Similarity=0.010  Sum_probs=184.9

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+.+.|++++|+.+|++++.. .|.+..++..++.++...|++++|...|+++.+.. +.+..++..++.+|
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQ-DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSY  143 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            45788888888999999999999988876 45677888888888999999999999998888876 56788888888888


Q ss_pred             HhcCChhHHHHHHHHc-CCCCC-cc----------hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHH
Q 043144          165 CRLGEIDNALQVLERM-SVAPD-VV----------TYNTILRTLCDSGKLNLAMEVLHKQLEKECYP-DVITYTILIEAT  231 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~-~~~~~-~~----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~  231 (580)
                      ...|++++|+..|+++ ...|+ ..          .+..++..+...|++++|+..|+++++..... +..++..+...+
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            8899999999888887 22222 22          23344777777888888888888877764221 466777777777


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 043144          232 CKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAE  311 (580)
Q Consensus       232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  311 (580)
                      ...|++++|...|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.. +.+..++..+..++...|++++|.
T Consensus       224 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence            77888888888887777663 2356677777777777788888887777776653 345667777777777777777777


Q ss_pred             HHHHHHHHcCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          312 RLLAEMVLKGCS-----------PSVVTFNILINFLCRKGLLGRAIDILEK  351 (580)
Q Consensus       312 ~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~  351 (580)
                      ..|+++++....           .+...|..+..++...|+.+.+..+..+
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            777777654210           0234566666666666666666665544

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.82  E-value=4.5e-18  Score=162.37  Aligned_cols=263  Identities=13%  Similarity=-0.019  Sum_probs=173.6

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+...|++++|+.+|++++.. .+.+...+..++..+...|++++|...|+++.+.. +.+..++..++..|
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQA-APEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            46778889999999999999999999886 45677888999999999999999999999998876 66788899999999


Q ss_pred             HhcCChhHHHHHHHHc--CCCCCcchHHHH--------------HH-HHHhcCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 043144          165 CRLGEIDNALQVLERM--SVAPDVVTYNTI--------------LR-TLCDSGKLNLAMEVLHKQLEKECYPDVITYTIL  227 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~--~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  227 (580)
                      ...|++++|++.++++  ..+.+...+..+              .. .+...|++++|...++++++.. +.+...+..+
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  178 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL  178 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            9999999999999987  223334444443              22 2555566666666666666543 2245556666


Q ss_pred             HHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144          228 IEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW  307 (580)
Q Consensus       228 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  307 (580)
                      +..+...|++++|...++++.+.. +.+..++..++..+...|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence            666666666666666666665543 2245556666666666666666666666655432 33455555556666666666


Q ss_pred             HHHHHHHHHHHHcCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          308 MDAERLLAEMVLKGCSP-----------SVVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       308 ~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                      ++|.+.++++.+.....           +...+..+..++...|+.++|..++++.
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            66666666555442110           2345555555555556665555555443

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.82  E-value=1.1e-18  Score=165.66  Aligned_cols=282  Identities=15%  Similarity=0.148  Sum_probs=108.9

Q ss_pred             HcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043144           96 RNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ  175 (580)
Q Consensus        96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  175 (580)
                      +.|+.++|.++++++      ++..+|..++.++.+.|++++|++.|.+      .+|..+|..++..+...|++++|+.
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~   82 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVK   82 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHH
Confidence            557788888888876      2334788888888888888888888854      2466677778888888888888888


Q ss_pred             HHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC
Q 043144          176 VLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP  254 (580)
Q Consensus       176 ~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  254 (580)
                      .++.. ...+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|.+++|...|..+       
T Consensus        83 yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------  148 (449)
T 1b89_A           83 YLQMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------  148 (449)
T ss_dssp             --------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-------
T ss_pred             HHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence            66655 334556677778888888888888777663       256667888888888888888888888755       


Q ss_pred             CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHH
Q 043144          255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILIN  334 (580)
Q Consensus       255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  334 (580)
                        ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.     .++.....++.
T Consensus       149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~  215 (449)
T 1b89_A          149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELIN  215 (449)
T ss_dssp             --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHH
T ss_pred             --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHH
Confidence              36777888888888888888888776      267778888888888888888855444322     23333445777


Q ss_pred             HHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHH
Q 043144          335 FLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR-GCYP------DIVTYNTLLTALC  407 (580)
Q Consensus       335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~------~~~~~~~li~~~~  407 (580)
                      .|.+.|.+++|..+++..+... +-....|+-+...|++- ++++..+.++....+ .+.|      +...|..+...|.
T Consensus       216 ~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          216 YYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            7778888888888887776653 22455566666666553 233333333322211 1111      2235666666677


Q ss_pred             hcCChHHHHHH
Q 043144          408 KDGKVDVAVEI  418 (580)
Q Consensus       408 ~~g~~~~A~~~  418 (580)
                      +.++++.|...
T Consensus       294 ~~~e~d~A~~t  304 (449)
T 1b89_A          294 KYEEYDNAIIT  304 (449)
T ss_dssp             HTTCHHHHHHH
T ss_pred             hhchHHHHHHH
Confidence            77777766653

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=3.1e-18  Score=162.66  Aligned_cols=266  Identities=8%  Similarity=0.054  Sum_probs=119.6

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      .+..|..++.++.+.|++++|++.|.+.      +|...|..++..+...|++++|+..++..++.  .+++.+.+.++.
T Consensus        31 ~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~  102 (449)
T 1b89_A           31 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  102 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHH
Confidence            3457888888888888888888888653      46667788888888888888888877776664  445677778888


Q ss_pred             HHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144          163 GYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      +|.+.|+++++.++++    .|+..+|..++..|...|.+++|...|..+         ..|..++.++.+.|++++|.+
T Consensus       103 ~Y~Klg~l~e~e~f~~----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVe  169 (449)
T 1b89_A          103 ALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD  169 (449)
T ss_dssp             ------CHHHHTTTTT----CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHhCCHHHHHHHHc----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHH
Confidence            8888888888777775    366668888888888888888888888765         357888888888888888888


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      .+..+      .++.+|..++.+|...|+++.|......+.     ..+.....++..|.+.|++++|..+++..+... 
T Consensus       170 a~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-  237 (449)
T 1b89_A          170 GARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-  237 (449)
T ss_dssp             HHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred             HHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence            88877      167888888888888888888866555433     233334467778888888888888888887654 


Q ss_pred             CCChhhHHHHHHHHHhc--CCHHHHHHHHHHhhhCCCCC------CHhhHHHHHHHHHhcCCHHHHHHH
Q 043144          323 SPSVVTFNILINFLCRK--GLLGRAIDILEKMPKHGCTP------NSLSYNPVLHGFCKEKKMDRAIEY  383 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~  383 (580)
                      +.....|+.|.-+|++-  +++.+.++.|..-  .+++|      +...|..+.-.|...++++.|...
T Consensus       238 ~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t  304 (449)
T 1b89_A          238 RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT  304 (449)
T ss_dssp             TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence            44566777777777654  2333444444322  22232      456677788888888888877763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.81  E-value=7.5e-18  Score=160.81  Aligned_cols=149  Identities=9%  Similarity=-0.014  Sum_probs=72.2

Q ss_pred             cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144          409 DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKL  488 (580)
Q Consensus       409 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  488 (580)
                      .|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...
T Consensus       151 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  228 (327)
T 3cv0_A          151 PNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDA  228 (327)
T ss_dssp             HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            334444444444433322 1233444444444444444444444444444332 22344455555555555555555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------------CHHHHHHHHHHHHhcCCHHHHH
Q 043144          489 FHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP------------TEATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       489 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~  556 (580)
                      ++++.+..+. +...+..++.+|...|++++|.+.++++.+.. +.            +..+|..++.++...|++++|.
T Consensus       229 ~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  306 (327)
T 3cv0_A          229 YNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVE  306 (327)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHH
Confidence            5555443322 44455555555555555555555555555432 11            2445555555666666666665


Q ss_pred             HHHHH
Q 043144          557 DLLNQ  561 (580)
Q Consensus       557 ~~~~~  561 (580)
                      .++++
T Consensus       307 ~~~~~  311 (327)
T 3cv0_A          307 LTYAQ  311 (327)
T ss_dssp             HHTTC
T ss_pred             HHHHH
Confidence            55543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.79  E-value=7.8e-17  Score=150.11  Aligned_cols=273  Identities=11%  Similarity=0.075  Sum_probs=180.3

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC
Q 043144          264 NGICKEGRLDEAIKFLNDMPSYGCQPNV--ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGL  341 (580)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  341 (580)
                      +-....|++..|+..+++....  .|+.  .....+.++|...|+++.|...++.    ..+|+..++..+...+...++
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~   80 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSR   80 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTT
T ss_pred             HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCc
Confidence            3455678888888877776543  2332  3445567778888888887765543    124566677777777777888


Q ss_pred             HHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          342 LGRAIDILEKMPKHGCTP-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN  420 (580)
Q Consensus       342 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  420 (580)
                      .++|++.++++...+..| +...+..+...+...|++++|+..+++      ..+...+..++..+.+.|++++|...|+
T Consensus        81 ~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~  154 (291)
T 3mkr_A           81 RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELK  154 (291)
T ss_dssp             HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888888888777665333 455566666777788888888887776      2456677777777888888888888888


Q ss_pred             HHHhCCCCCCHHHH---HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 043144          421 QLSNKHCSPVLITY---NTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV  497 (580)
Q Consensus       421 ~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  497 (580)
                      .+.+..  |+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|+++.+..+
T Consensus       155 ~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p  231 (291)
T 3mkr_A          155 KMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDS  231 (291)
T ss_dssp             HHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            877654  332211   122333445577888888888877763 45677777777788888888888888888776554


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144          498 RPNVITYNSIMLGLCKARQTYR-AIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD  557 (580)
Q Consensus       498 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  557 (580)
                      . +..++..++.++...|+.++ +.++++++.+.. |.++.+    .+...+.+.++++..
T Consensus       232 ~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~----~d~~~~~~~fd~~~~  286 (291)
T 3mkr_A          232 G-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFI----KEYRAKENDFDRLVL  286 (291)
T ss_dssp             T-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHH----HHHHHHHHHHHHHHH
T ss_pred             C-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHH----HHHHHHHHHHHHHHH
Confidence            4 67777777777777777765 456777777652 333332    223444455555443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.78  E-value=1.4e-16  Score=148.36  Aligned_cols=255  Identities=15%  Similarity=0.097  Sum_probs=166.5

Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChH
Q 043144          229 EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWM  308 (580)
Q Consensus       229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  308 (580)
                      +-....|++..|+..++................+.++|...|++++|+..++..    -+|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence            344556777777777766544321111234455667777777777777665442    2556666777777777777777


Q ss_pred             HHHHHHHHHHHcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          309 DAERLLAEMVLKGC-SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIM  387 (580)
Q Consensus       309 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  387 (580)
                      +|.+.++++...+. +.+...+..+...+...|++++|++.+++      +.+...+..++..+.+.|++++|...++++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            77777777776553 33455566666777777777777777766      236667777777777777777777777777


Q ss_pred             HHCCCCCCHHH---HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC
Q 043144          388 VSRGCYPDIVT---YNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKP  464 (580)
Q Consensus       388 ~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p  464 (580)
                      .+..  |+...   ...++..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...|++.++.. +-
T Consensus       157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~  232 (291)
T 3mkr_A          157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG  232 (291)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            7653  33221   1223333444577777777777777653 4566777777777777777777777777777653 33


Q ss_pred             CHHHHHHHHHHHHhCCCHHH-HHHHHHHHHhCCC
Q 043144          465 DTITYSSLVGGLSREGKVDE-AIKLFHDLERLGV  497 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~  497 (580)
                      +..++..++..+...|+.++ +.++++++.+..+
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            56677777777777777754 4677777766543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=1e-16  Score=159.44  Aligned_cols=372  Identities=10%  Similarity=-0.001  Sum_probs=175.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHcCCCCCcchHHHHHHHHHhcC--
Q 043144          126 IRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI---DNALQVLERMSVAPDVVTYNTILRTLCDSG--  200 (580)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g--  200 (580)
                      ...+.+.|++++|.++|++..+.|   ++..+..|+..|...|++   ++|+..|++.-.. ++..+..++..+...+  
T Consensus        10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A           10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCCCC
Confidence            334444455555555555444433   222233344444444444   4555555554211 4444444444333333  


Q ss_pred             ---ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHh---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHH
Q 043144          201 ---KLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVG---QAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDE  274 (580)
Q Consensus       201 ---~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  274 (580)
                         ++++|+..|++..+.+   +...+..|...|...+..+   ++.+.+......|   +...+..|...|...+.+++
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~  159 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANG---EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQ  159 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTT---CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGG
T ss_pred             CCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCccc
Confidence               4455555555555543   2224444555544433322   2333333333332   34455555555555553333


Q ss_pred             HHH----HHHHhhhCCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhc----CCHH
Q 043144          275 AIK----FLNDMPSYGCQPNVITHNIILRSMCSTG---RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRK----GLLG  343 (580)
Q Consensus       275 A~~----~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~  343 (580)
                      +..    ++.....    .++..+..+...|...|   +.++|.++|+...+.| +++...+..|..+|...    ++++
T Consensus       160 ~~~~a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~  234 (452)
T 3e4b_A          160 HLDDVERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEK  234 (452)
T ss_dssp             GHHHHHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred             CHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence            332    2332222    12225555555666666   6666666666666665 33444334555555443    5666


Q ss_pred             HHHHHHHHhhhCCCCCCHhhHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----ChHHH
Q 043144          344 RAIDILEKMPKHGCTPNSLSYNPVLHG-F--CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG-----KVDVA  415 (580)
Q Consensus       344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A  415 (580)
                      +|...|++.. .   -++..+..+... +  ...+++++|+.+|++..+.|   +...+..|...|. .|     ++++|
T Consensus       235 ~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A  306 (452)
T 3e4b_A          235 TAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA  306 (452)
T ss_dssp             HHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             HHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            7777776665 2   144455555554 3  34667777777777766654   4555556665555 34     67777


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHH
Q 043144          416 VEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----EGKVDEAIK  487 (580)
Q Consensus       416 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~  487 (580)
                      ...|++..    +.+...+..+...|..    ..++++|...|++..+.|   +......|...|..    ..+.++|..
T Consensus       307 ~~~~~~Aa----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~  379 (452)
T 3e4b_A          307 EAHFEKAV----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV  379 (452)
T ss_dssp             HHHHHTTT----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred             HHHHHHHh----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            77776666    2344555555555554    336777777777776655   23334445555543    346777777


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          488 LFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       488 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      .|+...+.|.. +.......+......++..+|..+.++..
T Consensus       380 ~~~~A~~~g~~-~a~~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          380 FSQLAKAQDTP-EANDLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             HHHHHHTTCCH-HHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            77777765532 22222222222222334555555555544

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.76  E-value=2e-16  Score=157.35  Aligned_cols=379  Identities=10%  Similarity=-0.005  Sum_probs=259.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKT---RKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+...+.+.|++++|+++|+++...|   +...+..+...|...|+.   ++|..+|++..+.    ++..+..|+..+
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~   79 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL   79 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence            456788899999999999999998875   444566677777888888   9999999998854    666777788866


Q ss_pred             HhcC-----ChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChh---HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 043144          165 CRLG-----EIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLN---LAMEVLHKQLEKECYPDVITYTILIEATCKESG  236 (580)
Q Consensus       165 ~~~g-----~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  236 (580)
                      ...+     ++++|+..|++.-.+.+...+..|+..|...+..+   ++.+.+......+   +...+..+...|...+.
T Consensus        80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence            5655     78899999999822334558888999998876544   4555555555544   56678888888988887


Q ss_pred             HhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC---CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhc----CChHH
Q 043144          237 VGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG---RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCST----GRWMD  309 (580)
Q Consensus       237 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~~~  309 (580)
                      ++++......+.+.-...++..+..|...|...|   +.++|+..|++..+.| +++...+..+...|...    +++++
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~  235 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT  235 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence            6666555444333222335558889999999999   9999999999999887 56666666777777655    79999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-----CHHHHH
Q 043144          310 AERLLAEMVLKGCSPSVVTFNILINF-L--CRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-----KMDRAI  381 (580)
Q Consensus       310 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~  381 (580)
                      |..+|+... .   .+...+..|..+ +  ...+++++|...|++..+.|   ++..+..+...|. .|     ++++|+
T Consensus       236 A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~  307 (452)
T 3e4b_A          236 AQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE  307 (452)
T ss_dssp             HHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred             HHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence            999999988 4   366677778777 4  46899999999999998875   6777888887777 55     999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHH
Q 043144          382 EYLEIMVSRGCYPDIVTYNTLLTALCK----DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKL  453 (580)
Q Consensus       382 ~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~  453 (580)
                      .+|++.. .   -+......|...|..    ..++++|...|+...+.+.   ......+...|..    ..++++|...
T Consensus       308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~  380 (452)
T 3e4b_A          308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVF  380 (452)
T ss_dssp             HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred             HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence            9999887 3   366777788877776    3489999999999988763   3445566666653    4689999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE  493 (580)
Q Consensus       454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  493 (580)
                      |+...+.| .++.......+......++.++|..+.++..
T Consensus       381 ~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~  419 (452)
T 3e4b_A          381 SQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQEL  419 (452)
T ss_dssp             HHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            99998877 2333322222222233345666777766654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.72  E-value=1.3e-15  Score=139.65  Aligned_cols=225  Identities=15%  Similarity=0.079  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----HHHHHH
Q 043144          328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY--PD----IVTYNT  401 (580)
Q Consensus       328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~  401 (580)
                      .+..+...+...|++++|...|+++.+..  .+...+..+...+...|++++|+..++++.+....  ++    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34445555555555555555555555544  34455555555555555555555555555442111  11    345555


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043144          402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK  481 (580)
Q Consensus       402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  481 (580)
                      +...+...|++++|...|+++....  |+.       ..+...|++++|...++++.... +.+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence            5556666666666666666655533  322       23444555666666666666542 2234456666666666777


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQ  561 (580)
Q Consensus       482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  561 (580)
                      +++|...++++.+..+. +...|..++.+|...|++++|...++++++.. +.+...|..++.++...|++++|.+.+++
T Consensus       155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            77777777766654433 56666666667777777777777777766653 44566666677777777777777777776


Q ss_pred             HHhCC
Q 043144          562 LCSRG  566 (580)
Q Consensus       562 ~~~~g  566 (580)
                      +.+..
T Consensus       233 a~~~~  237 (258)
T 3uq3_A          233 ARTKD  237 (258)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            66554

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.71  E-value=2.7e-15  Score=137.63  Aligned_cols=224  Identities=14%  Similarity=0.080  Sum_probs=135.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CC----HhhHHH
Q 043144          293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT--PN----SLSYNP  366 (580)
Q Consensus       293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~~  366 (580)
                      .+..+...+...|++++|...|+++.+..  .+...+..+..++...|++++|...++++.+....  ++    ...+..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34444444555555555555555554443  34445555555555555555555555554443111  01    345555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK  446 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  446 (580)
                      +...+...|++++|+..|+++.+.  .|+.       ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence            556666666666666666666553  2332       23445566667777776666543 2234556667777777777


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILAD  526 (580)
Q Consensus       447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  526 (580)
                      +++|...++++.+.. +.+..++..+...+...|++++|...++++.+..+. +...|..++.+|...|++++|...+++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            777777777777653 335667777777777888888888888877765433 567777777788888888888888877


Q ss_pred             HHHc
Q 043144          527 MVTR  530 (580)
Q Consensus       527 ~~~~  530 (580)
                      +.+.
T Consensus       233 a~~~  236 (258)
T 3uq3_A          233 ARTK  236 (258)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=1.6e-15  Score=134.86  Aligned_cols=198  Identities=14%  Similarity=0.016  Sum_probs=122.6

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID  439 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  439 (580)
                      +...+..+...+.+.|++++|+..|++.++..+. +...+..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence            4444555555555555555555555555544222 34455555555555555555555555555443 233445555555


Q ss_pred             HHHhC-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          440 GLSKV-----------GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       440 ~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      ++...           |++++|...|++.++.. +-+...+..+..++...|++++|+..|+++.+..  .+...+..+.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la  158 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA  158 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence            55555           88888888888887753 3356777788888888888888888888887766  4777888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      .+|...|++++|+..++++++.. |.+...+..++.++...|++++|.+.+++..
T Consensus       159 ~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          159 ELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            88888888888888888888763 6667788888888888888888888877653

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.70  E-value=1e-15  Score=136.13  Aligned_cols=193  Identities=16%  Similarity=0.065  Sum_probs=122.8

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+.+.|++++|+..|++++.. .|.+...+..+..++.+.|++++|...|++..+.. |.+...+..++.++
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~   83 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKE-NPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAY   83 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTT-SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            35666777777778888888888877766 45566777777777778888888888887777765 55667777777777


Q ss_pred             Hhc-----------CChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 043144          165 CRL-----------GEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEAT  231 (580)
Q Consensus       165 ~~~-----------g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  231 (580)
                      ...           |++++|+..|++. . .|.+...|..++.++...|++++|+..|+++++..  .+...+..+...+
T Consensus        84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~  161 (217)
T 2pl2_A           84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY  161 (217)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
Confidence            777           7777777777665 2 23345566666667777777777777777766655  4566666666666


Q ss_pred             HhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          232 CKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM  282 (580)
Q Consensus       232 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  282 (580)
                      ...|++++|+..|+.+.+..+ .+...+..+...+...|++++|+..|++.
T Consensus       162 ~~~g~~~~A~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          162 LSMGRLDEALAQYAKALEQAP-KDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTC--------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            667777777777766666532 24556666666666666666666666554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.69  E-value=6.3e-13  Score=136.49  Aligned_cols=427  Identities=10%  Similarity=0.033  Sum_probs=238.3

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---hhHHHH
Q 043144           99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE---IDNALQ  175 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~  175 (580)
                      ...+-+..|++.+.. .|-|...|..++..+.+.++++.+..+|+++...- |.....|...+..-.+.|+   ++.+..
T Consensus        47 ~~~d~i~~lE~~l~~-np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~f-P~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           47 DESDVIGKLNDMIEE-QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRF-PLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CCSCHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            345566667777766 45688899999999888899999999999988764 7778888888888888888   999999


Q ss_pred             HHHHc--CC--CCCcchHHHHHHHHHhcCCh--------hHHHHHHHHHHhC-CC-CC-ChhhHHHHHHHHH--------
Q 043144          176 VLERM--SV--APDVVTYNTILRTLCDSGKL--------NLAMEVLHKQLEK-EC-YP-DVITYTILIEATC--------  232 (580)
Q Consensus       176 ~~~~~--~~--~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~~~-~~-~~-~~~~~~~li~~~~--------  232 (580)
                      +|++.  ..  +|++..|...+....+.++.        +...++|+.++.. |. .+ ....|...+....        
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            99987  32  37888888877766665543        3344677776643 44 33 3457777776543        


Q ss_pred             -hcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh-------------cCCHHHHHHHHHHhhh--CCC----C----
Q 043144          233 -KESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK-------------EGRLDEAIKFLNDMPS--YGC----Q----  288 (580)
Q Consensus       233 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~g~~~~A~~~~~~~~~--~~~----~----  288 (580)
                       ..++++.+.++|+.++......-..+|......-..             ..+++.|...+.++..  .++    +    
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~  284 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLN  284 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSST
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccc
Confidence             234577888888888753111112333322211111             1122334444433211  010    0    


Q ss_pred             -------C-----C---HHHHHHHHHHHHhcC-------ChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHH
Q 043144          289 -------P-----N---VITHNIILRSMCSTG-------RWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAI  346 (580)
Q Consensus       289 -------~-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  346 (580)
                             |     +   ...|...+.---..+       ..+.+..+|++.+.. ++.....|...+..+...|+.++|.
T Consensus       285 ~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~  363 (679)
T 4e6h_A          285 QATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVI  363 (679)
T ss_dssp             TCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHH
T ss_pred             cchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHH
Confidence                   0     0   123333333222221       012234456665554 2345556666666666666666664


Q ss_pred             -HHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHH
Q 043144          347 -DILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC---------YPD------------IVTYNTLLT  404 (580)
Q Consensus       347 -~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---------~~~------------~~~~~~li~  404 (580)
                       ++|++.... .+.+...|...+....+.|++++|..+|++++....         .|+            ..+|...+.
T Consensus       364 r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~  442 (679)
T 4e6h_A          364 TKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMN  442 (679)
T ss_dssp             HHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHH
Confidence             666666653 223444555566666666666666666666654210         021            124555555


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHH
Q 043144          405 ALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG-KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVD  483 (580)
Q Consensus       405 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~  483 (580)
                      ...+.|+.+.|..+|..+.+.........|...+....+.+ +.+.|..+|+..++. .+-+...|...+......|+.+
T Consensus       443 ~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~  521 (679)
T 4e6h_A          443 TMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEES  521 (679)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHH
Confidence            55556666666666666655411112233332222222333 356666666666554 2334445555555555666666


Q ss_pred             HHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          484 EAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       484 ~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .|..+|+++....+.+  ....|...+..-...|+.+.+.++.+++.+.
T Consensus       522 ~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~  570 (679)
T 4e6h_A          522 QVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK  570 (679)
T ss_dssp             HHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6666666665543211  2345555555555666666666666666654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.69  E-value=9.1e-13  Score=135.28  Aligned_cols=431  Identities=10%  Similarity=0.042  Sum_probs=301.7

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCC---hhHHHHHHH
Q 043144          136 RKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGK---LNLAMEVLH  210 (580)
Q Consensus       136 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~  210 (580)
                      .+-+..|+..+..+ |.|..+|..++..+.+.++++.+..+|+++  ..|.....|...+..-.+.+.   ++.+.++|+
T Consensus        49 ~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe  127 (679)
T 4e6h_A           49 SDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLA  127 (679)
T ss_dssp             SCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence            34455556665555 789999999999999999999999999998  556677889999999999999   999999999


Q ss_pred             HHHhCCC-CCChhhHHHHHHHHHhcCCH--------hHHHHHHHHHHH-cCC-CC-CHhHHHHHHHHHH---------hc
Q 043144          211 KQLEKEC-YPDVITYTILIEATCKESGV--------GQAMKLLDEMRN-KGC-IP-DVVTYNVLVNGIC---------KE  269 (580)
Q Consensus       211 ~~~~~~~-~~~~~~~~~li~~~~~~g~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~---------~~  269 (580)
                      +.+.... +|++..|...+....+.++.        +...++|+.++. .|. .+ +...|...+....         .+
T Consensus       128 Ral~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq  207 (679)
T 4e6h_A          128 RCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQ  207 (679)
T ss_dssp             HHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHH
T ss_pred             HHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHH
Confidence            9998642 47888898888776665554        345578887665 354 44 4568888877543         23


Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-------------cCChHHHHHHHHHHHHc--CC----CCC-----
Q 043144          270 GRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS-------------TGRWMDAERLLAEMVLK--GC----SPS-----  325 (580)
Q Consensus       270 g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-------------~~~~~~a~~~~~~~~~~--~~----~~~-----  325 (580)
                      ++++.+..+|++........-..+|.....--..             ..+++.|...+.++...  ++    +..     
T Consensus       208 ~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~  287 (679)
T 4e6h_A          208 QRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQAT  287 (679)
T ss_dssp             HHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCC
T ss_pred             hHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccch
Confidence            4578899999998863222222334322111111             11233445555443221  11    110     


Q ss_pred             --------------hhhHHHHHHHHHhcC-------CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH-HH
Q 043144          326 --------------VVTFNILINFLCRKG-------LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI-EY  383 (580)
Q Consensus       326 --------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~  383 (580)
                                    ...|...+..--..+       ..+.+..+|++.+... +-.+..|...+..+...|+.++|. .+
T Consensus       288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~i  366 (679)
T 4e6h_A          288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKY  366 (679)
T ss_dssp             TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred             hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence                          123444444333222       1234567788887763 337888998888888999999997 99


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---------CCC------------CHHHHHHHHHHHH
Q 043144          384 LEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKH---------CSP------------VLITYNTVIDGLS  442 (580)
Q Consensus       384 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---------~~~------------~~~~~~~l~~~~~  442 (580)
                      |++.... +..+...+...+...-+.|+++.|..+|+.+....         ..|            ...+|...+....
T Consensus       367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~er  445 (679)
T 4e6h_A          367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMK  445 (679)
T ss_dssp             HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHH
Confidence            9999875 33466678888888999999999999999987631         013            1346778888888


Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE-GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      +.|..+.|..+|.++++....+....|...+..-.+. ++.+.|..+|+...+.-+ .+...|...+......|+.+.|+
T Consensus       446 R~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p-~~~~~w~~y~~fe~~~~~~~~AR  524 (679)
T 4e6h_A          446 RIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFA-TDGEYINKYLDFLIYVNEESQVK  524 (679)
T ss_dssp             HHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHhCCCHHHHH
Confidence            8999999999999998761122334454444333444 459999999999987533 36777788888888899999999


Q ss_pred             HHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCc
Q 043144          522 DILADMVTRSCKP--TEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKK  570 (580)
Q Consensus       522 ~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~  570 (580)
                      .+|++++....++  ....|...+..-...|+.+.+.++.+++.+.-+..+
T Consensus       525 ~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~  575 (679)
T 4e6h_A          525 SLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVN  575 (679)
T ss_dssp             HHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCC
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc
Confidence            9999999764222  356788888888999999999999999999876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=1.3e-14  Score=134.37  Aligned_cols=247  Identities=10%  Similarity=0.005  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC--HhhHHHHHHH
Q 043144          293 THNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPN--SLSYNPVLHG  370 (580)
Q Consensus       293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~  370 (580)
                      .+......+...|++++|...|+++++.. +.+...+..+..+|...|++++|...++++.+....++  ...|..+...
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            34445555666666666666666666553 23344566666666666666666666666665321111  1225556666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          371 FCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQA  450 (580)
Q Consensus       371 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  450 (580)
                      +...|++++|+..|++..+..+. +..++..+...|...|++++|...+++..+.. +.+...|..+...+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666554322 33455556666666666666666666555543 23344444444222233355666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCC-CCCC------HHHHHHHHHHHHhcCCHHHH
Q 043144          451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLG-VRPN------VITYNSIMLGLCKARQTYRA  520 (580)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~A  520 (580)
                      ...|+++.+.. +.+...+..+...+...|+   +++|...++++.+.. ..|+      ...|..+...|...|++++|
T Consensus       162 ~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          162 DSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            66665555442 2234444455555555555   555555555554321 0111      13444555555555555555


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          521 IDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      .+.++++++.. |.++..+..+..
T Consensus       241 ~~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          241 DAAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHHHHHHhcC-ccHHHHHHHhhh
Confidence            55555555442 334444444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.68  E-value=2e-14  Score=133.06  Aligned_cols=231  Identities=9%  Similarity=0.030  Sum_probs=132.4

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHHHHHHHHH
Q 043144          157 YNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD--VITYTILIEATC  232 (580)
Q Consensus       157 ~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~li~~~~  232 (580)
                      +...+..+...|++++|+..|+++  ..+.+...+..++.++...|++++|++.++++++....++  ...|..+...+.
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            344455555556666666655555  2223344555566666666666666666666655221111  122556666666


Q ss_pred             hcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144          233 KESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAER  312 (580)
Q Consensus       233 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  312 (580)
                      ..|++++|...|+.+.+... .+..+|..+...|...|++++|+..|++..+.. +.+...+..+...+...+++++|..
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666665532 245666677777777777777777777766552 3445555555523334447777777


Q ss_pred             HHHHHHHcCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHhhhCC-CCCC------HhhHHHHHHHHHhcCCHHHHHH
Q 043144          313 LLAEMVLKGCSPSVVTFNILINFLCRKGL---LGRAIDILEKMPKHG-CTPN------SLSYNPVLHGFCKEKKMDRAIE  382 (580)
Q Consensus       313 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~~~~~~A~~  382 (580)
                      .|+.+.+.. +.+...+..+..++...|+   +++|...++++.+.. ..|+      ..++..+...|...|++++|..
T Consensus       164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            777776653 3334555566666666666   556666666555431 0112      1345556666666677777777


Q ss_pred             HHHHHHHC
Q 043144          383 YLEIMVSR  390 (580)
Q Consensus       383 ~~~~~~~~  390 (580)
                      .|+++.+.
T Consensus       243 ~~~~al~~  250 (272)
T 3u4t_A          243 AWKNILAL  250 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            77766654

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.68  E-value=1.7e-13  Score=126.81  Aligned_cols=224  Identities=9%  Similarity=-0.023  Sum_probs=143.7

Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 043144          325 SVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIVTYN  400 (580)
Q Consensus       325 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~  400 (580)
                      +...+..+...+...|++++|...|++..+.   .+...+..+...|..    .+++++|+..|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            3445555555666666666666666665552   234455555666666    666666666666666543   455566


Q ss_pred             HHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          401 TLLTALCK----DGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK----VGKTEQAMKLLEEMRTKGLKPDTITYSSL  472 (580)
Q Consensus       401 ~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  472 (580)
                      .+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            66666666    666666666666666543   45556666666666    677777777777766654   45556666


Q ss_pred             HHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          473 VGGLSR----EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----ARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       473 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      ...+..    .+++++|...|++..+.+   +...+..+..+|..    .+++++|+..+++..+.+   +...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            666666    677777777777776643   45566667777777    777777777777777653   2566667777


Q ss_pred             HHHh----cCCHHHHHHHHHHHHhCC
Q 043144          545 GIAY----EGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       545 ~~~~----~g~~~~A~~~~~~~~~~g  566 (580)
                      .|..    .|++++|.+++++..+.|
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            7776    777777777777777766

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=2.2e-16  Score=161.94  Aligned_cols=117  Identities=17%  Similarity=0.173  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHHHhcCCHhHHHHHHHHHHH---cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144          221 VITYTILIEATCKESGVGQAMKLLDEMRN---KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII  297 (580)
Q Consensus       221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  297 (580)
                      ..+|+++|++|++.|++++|.++|++|.+   .|+.||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            44666666666666666666666655542   356666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHHHcCCCCChhhHHHHHHHHH
Q 043144          298 LRSMCSTGRW-MDAERLLAEMVLKGCSPSVVTFNILINFLC  337 (580)
Q Consensus       298 l~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  337 (580)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence            6666666653 566666666666666666666666665443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=1.2e-14  Score=139.90  Aligned_cols=229  Identities=10%  Similarity=0.046  Sum_probs=126.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 043144          292 ITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGL-LGRAIDILEKMPKHGCTPNSLSYNPVLHG  370 (580)
Q Consensus       292 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  370 (580)
                      ..|..+...+...|++++|+..++++++.. +.+...|..+..++...|+ +++|+..|+++++..+. +...|..+..+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            445555555666666666666666666553 3345556666666666664 66666666666665433 55566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHH
Q 043144          371 FCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK-VGKTEQ  449 (580)
Q Consensus       371 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~  449 (580)
                      +...|++++|+..|+++++..+. +...|..+..++...|++++|+..++++.+.+ +.+...|+.+..++.. .|..++
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            66666666666666666654332 44566666666666666666666666666554 2345555555555555 444344


Q ss_pred             H-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-------
Q 043144          450 A-----MKLLEEMRTKGLKPDTITYSSLVGGLSREG--KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR-------  515 (580)
Q Consensus       450 A-----~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------  515 (580)
                      |     +..|++.+... +-+...|..+...+...|  ++++|.+.+.++ +..+ .+...+..++.+|...|       
T Consensus       254 A~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p-~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSH-SSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTC-CCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCC-CCHHHHHHHHHHHHHHhcccccch
Confidence            4     35555555432 223445555555555555  355555555555 3222 24455555555555542       


Q ss_pred             --CHHHHHHHHHHH
Q 043144          516 --QTYRAIDILADM  527 (580)
Q Consensus       516 --~~~~A~~~~~~~  527 (580)
                        .+++|+++++++
T Consensus       331 ~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          331 EDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence              135555555555

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.67  E-value=1.9e-14  Score=138.47  Aligned_cols=245  Identities=9%  Similarity=0.000  Sum_probs=184.2

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGK-TRKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      ..|+.+...+...|++++|+..|++++.. .|.+..+|+.+..++...|+ +++|+..|++++... +.+...|..++.+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l-~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIEL-NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHh-CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            35677778888889999999999998886 45677888888888999996 999999999988876 6678888889999


Q ss_pred             HHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh-cCCHhHH
Q 043144          164 YCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK-ESGVGQA  240 (580)
Q Consensus       164 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A  240 (580)
                      +...|++++|+..|+++  -.+.+..+|..++.++.+.|++++|+..|+++++.+ +.+...|+.+..++.. .|..++|
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHH
Confidence            98999999999999887  334567788888888888899999999998888875 2367788888888888 5555777


Q ss_pred             -----HHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--------
Q 043144          241 -----MKLLDEMRNKGCIPDVVTYNVLVNGICKEG--RLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG--------  305 (580)
Q Consensus       241 -----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--------  305 (580)
                           +..|+..++.... +...|+.+..++...|  ++++|++.+.++ +.. +.+...+..+..+|...|        
T Consensus       255 ~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchH
Confidence                 4777777776422 5677888888777777  578888888777 332 455667777777777653        


Q ss_pred             -ChHHHHHHHHHH-HHcCCCCChhhHHHHHHHH
Q 043144          306 -RWMDAERLLAEM-VLKGCSPSVVTFNILINFL  336 (580)
Q Consensus       306 -~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~  336 (580)
                       ..++|.++++.+ .+.+ +.....|..+...+
T Consensus       332 ~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l  363 (382)
T 2h6f_A          332 DILNKALELCEILAKEKD-TIRKEYWRYIGRSL  363 (382)
T ss_dssp             HHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence             247777787777 5442 22334555554444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=2.6e-15  Score=139.17  Aligned_cols=246  Identities=14%  Similarity=-0.007  Sum_probs=173.4

Q ss_pred             HHcCChHHHHHHHHHHHhCCC---CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChh
Q 043144           95 VRNGELEEGFKFLESMVYHGD---IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEID  171 (580)
Q Consensus        95 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  171 (580)
                      ...|++++|+..|++++....   +.+..++..++..+...|++++|...|+++.+.. +.+..+|..++..|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            345789999999999988632   2245778889999999999999999999998876 667889999999999999999


Q ss_pred             HHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144          172 NALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN  249 (580)
Q Consensus       172 ~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  249 (580)
                      +|+..|+++  ..+.+..++..++.++...|++++|...|+++.+..  |+.......+..+...|++++|...++....
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            999999988  234467788899999999999999999999988864  4444444455556677888888888877776


Q ss_pred             cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043144          250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ---PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV  326 (580)
Q Consensus       250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (580)
                      .. +++...+. ++..+...++.++|+..+.+.......   .+...+..+...+...|++++|...|+++.+..  |+.
T Consensus       173 ~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~  248 (275)
T 1xnf_A          173 KS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN  248 (275)
T ss_dssp             HS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT
T ss_pred             cC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh
Confidence            53 23334443 666677777888888888877653210   013555666666666667777776666666542  211


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHH
Q 043144          327 VTFNILINFLCRKGLLGRAIDIL  349 (580)
Q Consensus       327 ~~~~~l~~~~~~~g~~~~a~~~~  349 (580)
                        +.....++...|++++|++.+
T Consensus       249 --~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 --FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --CHHHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHHHhhHHHH
Confidence              222234445555565555544

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.66  E-value=4.9e-14  Score=128.76  Aligned_cols=203  Identities=15%  Similarity=-0.020  Sum_probs=126.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144          362 LSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGL  441 (580)
Q Consensus       362 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  441 (580)
                      ..+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...|
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            3455555556666666666666666555422 244555666666666666666666666665543 23455566666666


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144          442 SKVGKTEQAMKLLEEMRTKGLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRA  520 (580)
Q Consensus       442 ~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  520 (580)
                      ...|++++|.++++++...+..| +...+..+...+...|++++|...++++.+..+. +...+..++.+|...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHHH
Confidence            66667777777666666522223 3455666666677777777777777776654433 566666777777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          521 IDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      ...++++.+.. +.+...+..++..+...|++++|.++++++.+..+.
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~  241 (252)
T 2ho1_A          195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG  241 (252)
T ss_dssp             HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence            77777766542 455666677777777777777777777777766543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.66  E-value=3.9e-13  Score=124.34  Aligned_cols=223  Identities=9%  Similarity=-0.036  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHhhHHH
Q 043144          291 VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR----KGLLGRAIDILEKMPKHGCTPNSLSYNP  366 (580)
Q Consensus       291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~  366 (580)
                      ..++..+...+...|++++|...|++..+.   .+...+..+...|..    .+++++|...|++..+.+   +...+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            344444445555555555555555555542   233444555555555    555555555555555543   4455555


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          367 VLHGFCK----EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCK----DGKVDVAVEILNQLSNKHCSPVLITYNTVI  438 (580)
Q Consensus       367 l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  438 (580)
                      +...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+.
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  153 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence            5555555    566666666666665542   44555556666666    666666666666666543   344555555


Q ss_pred             HHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          439 DGLSK----VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----EGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       439 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      ..|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+..+
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~  227 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM  227 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence            56655    667777777777766653   44556666666666    777777777777776653   25556666667


Q ss_pred             HHh----cCCHHHHHHHHHHHHHcC
Q 043144          511 LCK----ARQTYRAIDILADMVTRS  531 (580)
Q Consensus       511 ~~~----~g~~~~A~~~~~~~~~~~  531 (580)
                      |..    .+++++|.+.+++..+.+
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHcC
Confidence            776    777777777777777654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.65  E-value=1.2e-13  Score=123.48  Aligned_cols=204  Identities=11%  Similarity=-0.051  Sum_probs=133.0

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID  439 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  439 (580)
                      +...+..+...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            344555566666666666666666666665432 234566666666666666667766666666544 234556666667


Q ss_pred             HHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 043144          440 GLSKV-GKTEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQT  517 (580)
Q Consensus       440 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  517 (580)
                      .+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+..+. +...+..++.++...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence            77777 777777777777766222222 456666777777777777777777777665433 566677777777777777


Q ss_pred             HHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          518 YRAIDILADMVTRSCK-PTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       518 ~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ++|...++++.+.. + .+...+..+...+...|+.+.|..+++.+.+..+
T Consensus       164 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p  213 (225)
T 2vq2_A          164 GDADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP  213 (225)
T ss_dssp             HHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            77777777777653 4 5666666667777777777777777777766543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.65  E-value=2.2e-14  Score=130.25  Aligned_cols=199  Identities=12%  Similarity=0.073  Sum_probs=92.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144          364 YNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSK  443 (580)
Q Consensus       364 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  443 (580)
                      +..+...+...|++++|...|+++.+... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus        26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~  103 (243)
T 2q7f_A           26 GGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVV  103 (243)
T ss_dssp             ----------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHH
Confidence            33444444444455555555544444321 133344444444555555555555555444432 2234444555555555


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144          444 VGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDI  523 (580)
Q Consensus       444 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  523 (580)
                      .|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|...
T Consensus       104 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~  181 (243)
T 2q7f_A          104 KEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEALSQ  181 (243)
T ss_dssp             TTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHHHHH
Confidence            555555555555554432 224445555555555555555555555555543322 444555555555555555555555


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          524 LADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       524 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ++++.+.. +.+..++..++.+|...|++++|.+.++++.+..+
T Consensus       182 ~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          182 FAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            55555442 34455555555555555555555555555555443

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.64  E-value=3.7e-16  Score=160.29  Aligned_cols=117  Identities=15%  Similarity=0.227  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSN---KHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSL  472 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l  472 (580)
                      ..+|+++|++|++.|++++|.++|.+|.+   .++.||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            34677777777777777777777766543   345667777777777777777777777777777766777777777777


Q ss_pred             HHHHHhCCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          473 VGGLSREGK-VDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       473 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      |.++++.|+ .++|.++|++|.+.|+.||..+|++++..+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence            777666665 3566677777766666677776666665443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.63  E-value=2.7e-14  Score=129.63  Aligned_cols=214  Identities=11%  Similarity=0.073  Sum_probs=142.3

Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          326 VVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTA  405 (580)
Q Consensus       326 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  405 (580)
                      ...+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|+..++++.+... .+...+..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHH
Confidence            345566666677777777777777777665332 566677777777777777777777777776532 255677777777


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          406 LCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA  485 (580)
Q Consensus       406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A  485 (580)
                      +...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence            778888888888887777654 3456677777888888888888888888877653 34677778888888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      ...++++.+..+. +..++..++.+|...|++++|...++++.+.. +.+...+..+...
T Consensus       179 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l  236 (243)
T 2q7f_A          179 LSQFAAVTEQDPG-HADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLL  236 (243)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC-
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHH
Confidence            8888888765433 67778888888888888888888888888763 5556666555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.63  E-value=2.7e-13  Score=123.76  Aligned_cols=200  Identities=13%  Similarity=-0.038  Sum_probs=131.3

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043144          327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL  406 (580)
Q Consensus       327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  406 (580)
                      ..+..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.+.... +...+..+...+
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~  115 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHH
Confidence            44555555666666666666666666554322 4555666666666666666666666666654322 455666666677


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 043144          407 CKDGKVDVAVEILNQLSNKHCSP-VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA  485 (580)
Q Consensus       407 ~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A  485 (580)
                      ...|++++|...++++...+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence            77777777777777766522123 34566667777777777777777777776653 33566777777777778888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ...++++.+..+ .+...+..++..+...|++++|.+.++++.+.
T Consensus       195 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          195 RQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            888877776543 35666777777777788888888888777765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.63  E-value=6e-15  Score=136.75  Aligned_cols=221  Identities=13%  Similarity=-0.075  Sum_probs=131.6

Q ss_pred             HhcCChHHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhH
Q 043144          130 CKVGKTRKATRVMEIVEDSGA---VPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNL  204 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~  204 (580)
                      ...|++++|...|+.+.+...   +.+..++..++..|...|++++|+..|+++  ..+.+..+|..++..+...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            345777888888888877532   224566777777788888888888888776  223456677777777777777777


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          205 AMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPS  284 (580)
Q Consensus       205 A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  284 (580)
                      |...|+++++.. +.+...+..+...+...|++++|...|+.+.+..  |+.......+..+...|++++|...+.+...
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            777777777653 2245666667777777777777777777766652  3333333333444555666666666655544


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          285 YGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS---PSVVTFNILINFLCRKGLLGRAIDILEKMPKH  355 (580)
Q Consensus       285 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  355 (580)
                      .. +++...+ .++..+...++.++|...+..+......   .+...+..+...|...|++++|...|+++.+.
T Consensus       173 ~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  244 (275)
T 1xnf_A          173 KS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  244 (275)
T ss_dssp             HS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            32 2222222 2444455555556666666555433110   01344555555555555555555555555544

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=1.6e-13  Score=122.74  Aligned_cols=196  Identities=17%  Similarity=0.082  Sum_probs=86.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144          120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC  197 (580)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~  197 (580)
                      ..+..++..+...|++++|...|+.+.+.. +.+...+..++..|...|++++|++.++++  ..+.+..++..++..+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            344444444555555555555555444433 333444444445555555555555554444  11223334444444444


Q ss_pred             hc-CChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144          198 DS-GKLNLAMEVLHKQLEKECYP-DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA  275 (580)
Q Consensus       198 ~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  275 (580)
                      .. |++++|...++++.+.+..| +...+..+...+...|++++|...++++.+... .+...+..++..+...|++++|
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHH
Confidence            44 55555555544444411111 123344444444444555555544444444321 1344444444444445555555


Q ss_pred             HHHHHHhhhCCCC-CCHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144          276 IKFLNDMPSYGCQ-PNVITHNIILRSMCSTGRWMDAERLLAEMV  318 (580)
Q Consensus       276 ~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  318 (580)
                      ...++++.+.. + .+...+..+...+...|+.+.+..+++.+.
T Consensus       167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  209 (225)
T 2vq2_A          167 DYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQ  209 (225)
T ss_dssp             HHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            54444444322 1 233334444444444444444444444443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.59  E-value=3.4e-14  Score=140.14  Aligned_cols=273  Identities=15%  Similarity=0.070  Sum_probs=152.1

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI----IPCTSLIRGFCKVGKTRKATRVMEIVEDS----G-AVPDVIT  156 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~  156 (580)
                      .+..+...+...|++++|+..|++++... +.+.    .++..+...|...|++++|...|++....    + .+....+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            44566778888899999999999888763 3333    46778888888899999999888877653    1 1334556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHc-------C-CCCCcchHHHHHHHHHhcCC-----------------hhHHHHHHHH
Q 043144          157 YNVLISGYCRLGEIDNALQVLERM-------S-VAPDVVTYNTILRTLCDSGK-----------------LNLAMEVLHK  211 (580)
Q Consensus       157 ~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~  211 (580)
                      +..++..|...|++++|+..|+++       + .+....++..++..|...|+                 +++|++.+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            777888888888888888888775       1 11123456667777777777                 6666666555


Q ss_pred             HHhCC----C-CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          212 QLEKE----C-YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI-PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY  285 (580)
Q Consensus       212 ~~~~~----~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  285 (580)
                      .++..    . +....++..+...+...|++++|...+++..+.... ++..                            
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------  260 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA----------------------------  260 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH----------------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH----------------------------
Confidence            44320    0 001223444444455555555555555544332100 0000                            


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-----CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCC----
Q 043144          286 GCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-----PSVVTFNILINFLCRKGLLGRAIDILEKMPKHG----  356 (580)
Q Consensus       286 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----  356 (580)
                         .....+..+...+...|++++|...++++.+....     ....++..+...|...|++++|...+++..+..    
T Consensus       261 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          261 ---AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             ---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             ---HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence               00113344444444455555555544444332100     012344455555555555555555555544320    


Q ss_pred             -CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144          357 -CTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR  390 (580)
Q Consensus       357 -~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  390 (580)
                       ......++..+...|...|++++|...+++..+.
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence             0011334555666666666666666666666553

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.59  E-value=5.9e-14  Score=138.07  Aligned_cols=300  Identities=13%  Similarity=0.031  Sum_probs=175.6

Q ss_pred             hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHH
Q 043144          221 VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD----VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNI  296 (580)
Q Consensus       221 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  296 (580)
                      ...+......+...|++++|...|+++.+.+.. +    ..++..+...+...|++++|...+++.....          
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH----------
Confidence            334445555556666666666666665554211 2    2345555555555666666665555543210          


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----CCCHhhHHHHHHH
Q 043144          297 ILRSMCSTGRWMDAERLLAEMVLKGCS-PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGC-----TPNSLSYNPVLHG  370 (580)
Q Consensus       297 ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~  370 (580)
                                           ...+.. ....++..+...|...|++++|...+++..+...     .....++..+...
T Consensus        78 ---------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~  136 (406)
T 3sf4_A           78 ---------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV  136 (406)
T ss_dssp             ---------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence                                 000000 0122344444455555555555555544433200     0012245555566


Q ss_pred             HHhcCC--------------------HHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144          371 FCKEKK--------------------MDRAIEYLEIMVSR----GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNK  425 (580)
Q Consensus       371 ~~~~~~--------------------~~~A~~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  425 (580)
                      |...|+                    +++|...+++..+.    +..|. ..++..+...+...|++++|...+++..+.
T Consensus       137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  216 (406)
T 3sf4_A          137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI  216 (406)
T ss_dssp             HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred             HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            666666                    66666666655431    11111 236677777788888888888888776543


Q ss_pred             CC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Q 043144          426 HC-SPV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTK----GLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERL  495 (580)
Q Consensus       426 ~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  495 (580)
                      .. .++    ...+..+...|...|++++|...+++....    +..+ ...++..+...+...|++++|...++++.+.
T Consensus       217 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  296 (406)
T 3sf4_A          217 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  296 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence            20 011    236777888888889999998888887643    1111 1456778888889999999999999887642


Q ss_pred             CCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCH
Q 043144          496 GVR-PN----VITYNSIMLGLCKARQTYRAIDILADMVTR----SC-KPTEATYTILIEGIAYEGLA  552 (580)
Q Consensus       496 ~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~  552 (580)
                      ... ++    ..++..+..+|...|++++|...+++.++.    +. +....++..++..+...|+.
T Consensus       297 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          297 AQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            111 11    557788888999999999999999887643    11 11245677788888887766

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.58  E-value=5.7e-14  Score=138.20  Aligned_cols=131  Identities=12%  Similarity=0.014  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hh
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGC-QPN----VITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-PS----VV  327 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~  327 (580)
                      ++..+...|...|++++|...+++..+... .++    ..++..+...+...|++++|...+++..+.... .+    ..
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  268 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ  268 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHH
Confidence            455566666666666666666666543100 011    124555555566666666666666555432100 01    23


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          328 TFNILINFLCRKGLLGRAIDILEKMPKHGCT-PN----SLSYNPVLHGFCKEKKMDRAIEYLEIMV  388 (580)
Q Consensus       328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~  388 (580)
                      ++..+...|...|++++|...+++..+.... .+    ..++..+...|...|++++|...+++..
T Consensus       269 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  334 (406)
T 3sf4_A          269 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  334 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555556666666666666666555432100 01    2344455555556666666666655544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.58  E-value=5.7e-14  Score=138.54  Aligned_cols=280  Identities=13%  Similarity=0.023  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCCChhh
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTGRWMDAERLLAEMVLK----G-CSPSVVT  328 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~  328 (580)
                      .+..+...+...|++++|+..|+++.+.+ +.+.    ..+..+...+...|++++|...++++++.    + .+.....
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34445556666677777777776666542 2222    34555666666666666666666665542    1 0112234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCCCHhhHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCC
Q 043144          329 FNILINFLCRKGLLGRAIDILEKMPKHG-----CTPNSLSYNPVLHGFCKEKK----------MDRAIEYLEIMVSRGCY  393 (580)
Q Consensus       329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~  393 (580)
                      +..+...|...|++++|...+++..+..     .+....++..+...|...|+          +++|...          
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~----------  198 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA----------  198 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH----------
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH----------
Confidence            4555555555566666655555544320     00012233444444444444          0000000          


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC--
Q 043144          394 PDIVTYNTLLTALCKDGKVDVAVEILNQLSNK----H-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PD--  465 (580)
Q Consensus       394 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~--  465 (580)
                                        +++|...+++..+.    + .+.....+..+...|...|++++|...+++..+.... ++  
T Consensus       199 ------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  260 (411)
T 4a1s_A          199 ------------------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA  260 (411)
T ss_dssp             ------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence                              44444444443221    0 0011234555556666666666666666665432100 01  


Q ss_pred             --HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 043144          466 --TITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-----PNVITYNSIMLGLCKARQTYRAIDILADMVTR----SC-K  533 (580)
Q Consensus       466 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~  533 (580)
                        ..++..+...+...|++++|...++++.+....     ....++..++.+|...|++++|...++++++.    +. .
T Consensus       261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  340 (411)
T 4a1s_A          261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRI  340 (411)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChH
Confidence              125556666666777777777777665432110     01345666666777777777777777766543    10 0


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          534 PTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       534 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      ....++..++.+|...|++++|.+++++..+..
T Consensus       341 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          341 GEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            113356666777777777777777777766543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.57  E-value=3e-12  Score=120.56  Aligned_cols=185  Identities=11%  Similarity=0.002  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhCCCHHHHHHHH
Q 043144          378 DRAIEYLEIMVS-RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-LI-TYNTVIDGLSKVGKTEQAMKLL  454 (580)
Q Consensus       378 ~~A~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~  454 (580)
                      ++|..+|++.++ ..+ .+...|..++..+.+.|++++|..+|+++.+..  |+ .. .|..++..+.+.|++++|..+|
T Consensus        81 ~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~  157 (308)
T 2ond_A           81 DEAANIYERAISTLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHTTTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHH
Confidence            455555555444 111 123344445555555555555555555554432  21 21 4444555555555555555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C
Q 043144          455 EEMRTKGLKPDTITYSSLVGGLS-REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS-C  532 (580)
Q Consensus       455 ~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~  532 (580)
                      ++.++.. +++...|...+.... ..|++++|..+|+++.+..+. +...|..++..+...|++++|+.+|++++... +
T Consensus       158 ~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l  235 (308)
T 2ond_A          158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCC
Confidence            5555432 122223322222211 245555555555555443322 44555555555555555555555555555431 2


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          533 KP--TEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       533 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      +|  ....|..++......|+.+.|..+++++.+..+
T Consensus       236 ~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcc
Confidence            32  244555555555555555555555555555443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.56  E-value=2.5e-12  Score=121.05  Aligned_cols=217  Identities=8%  Similarity=-0.033  Sum_probs=149.1

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144          101 EEGFKFLESMVYHGDIPDIIPCTSLIRGFC-------KVGKT-------RKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus       101 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      ++|+..|++++.. .|.+...|..++..+.       +.|++       ++|..+|++.+..-.|.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~-~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            6778888888775 4566777887777765       35775       7888888888773225566678888888888


Q ss_pred             cCChhHHHHHHHHc-CCCCC-cc-hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-hcCCHhHHHH
Q 043144          167 LGEIDNALQVLERM-SVAPD-VV-TYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATC-KESGVGQAMK  242 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~  242 (580)
                      .|++++|..+|+++ ...|+ .. +|..++..+.+.|++++|..+|+++++.. +++...|...+.... ..|++++|..
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            88888888888887 54554 33 67888888888888888888888887754 233444443333322 2577777777


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG-CQP--NVITHNIILRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  319 (580)
                      +|+...+.. +.+...|..++..+.+.|++++|..+|++..... ++|  ....|..++......|+.+.|..+++++.+
T Consensus       191 ~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777776653 2256677777777777777777777777777642 233  345666666666777777777777777766


Q ss_pred             c
Q 043144          320 K  320 (580)
Q Consensus       320 ~  320 (580)
                      .
T Consensus       270 ~  270 (308)
T 2ond_A          270 A  270 (308)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.56  E-value=1.2e-13  Score=131.92  Aligned_cols=273  Identities=16%  Similarity=0.103  Sum_probs=149.9

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----C-CCCCHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD----IIPCTSLIRGFCKVGKTRKATRVMEIVEDS----G-AVPDVIT  156 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~~~~~  156 (580)
                      .+......+...|++++|+..|++++... +.+    ...+..+...+...|++++|...+++....    + .+....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34455677888899999999998888763 333    356777888888888888888888876542    1 1223456


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHc----CCCCC----cchHHHHHHHHHhcCC--------------------hhHHHHH
Q 043144          157 YNVLISGYCRLGEIDNALQVLERM----SVAPD----VVTYNTILRTLCDSGK--------------------LNLAMEV  208 (580)
Q Consensus       157 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~  208 (580)
                      +..++..|...|++++|...+++.    ...++    ..++..++..+...|+                    +++|...
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~  165 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL  165 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence            777778888888888888887775    11112    2256666667777776                    6666655


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC--
Q 043144          209 LHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC-IPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY--  285 (580)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--  285 (580)
                      +++.+...                            ..   .+. .....++..+...+...|++++|...+++..+.  
T Consensus       166 ~~~a~~~~----------------------------~~---~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          166 YEENLSLV----------------------------TA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHHHHH----------------------------HH---HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHH----------------------------Hh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            55543210                            00   000 001223444444444444444444444443321  


Q ss_pred             --CC-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-C----ChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 043144          286 --GC-QPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-P----SVVTFNILINFLCRKGLLGRAIDILEKMPKHGC  357 (580)
Q Consensus       286 --~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  357 (580)
                        +. .....++..+...+...|++++|...+++..+.... .    ...++..+...+...|++++|...+++..+...
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              00 001123444444555555555555555544432100 0    023445555666666666666666655543210


Q ss_pred             -----CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 043144          358 -----TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR  390 (580)
Q Consensus       358 -----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  390 (580)
                           .....++..+...|...|++++|...+++..+.
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence                 001234555666666667777777666666553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=1.1e-12  Score=113.13  Aligned_cols=168  Identities=13%  Similarity=0.100  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 043144          395 DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVG  474 (580)
Q Consensus       395 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~  474 (580)
                      +..+|..+...|...|++++|+..|++..+.+ +.+...+..+..+|...|++++|...++...... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            34556666666666666666666666666554 3345566666666666677777776666666543 334555666666


Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKE  554 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  554 (580)
                      .+...++++.|...+.++....+. +...+..++.+|...|++++|++.+++.++.. |.+..+|..++.+|...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            667777777777777776655433 56666677777777777777777777776653 5566677777777777777777


Q ss_pred             HHHHHHHHHhCC
Q 043144          555 ALDLLNQLCSRG  566 (580)
Q Consensus       555 A~~~~~~~~~~g  566 (580)
                      |.+.++++++..
T Consensus       160 A~~~~~~al~~~  171 (184)
T 3vtx_A          160 AVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCC
Confidence            777777776653

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.55  E-value=5.3e-13  Score=130.21  Aligned_cols=232  Identities=8%  Similarity=-0.064  Sum_probs=163.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CC-CHHHHH
Q 043144          332 LINFLCRKGLLGRAIDILEKMPKH----GCTP-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC-----YP-DIVTYN  400 (580)
Q Consensus       332 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~-~~~~~~  400 (580)
                      ....+...|++++|...+++..+.    +-.+ ...++..+...|...|++++|+..+++..+...     .+ ...++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            455667778888888888877653    1111 235677777888888888888888887764211     11 124677


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 043144          401 TLLTALCKDGKVDVAVEILNQLSNKHCS-PV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTK----GL-KPDTITYS  470 (580)
Q Consensus       401 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~  470 (580)
                      .+..+|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7888888889999998888887643200 11    246778888899999999999999888762    22 33456788


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLERLGV---RP-NVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      .+...+...|++++|...+++..+...   .| ....+..+...|...|+   +++|+.++++..  ..+.....+..++
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la  346 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA  346 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence            888899999999999999998764311   11 22335677888888888   777777777652  1122345777889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhC
Q 043144          544 EGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      ..|...|++++|.+++++..+.
T Consensus       347 ~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          347 KYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999988753

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.54  E-value=1.8e-13  Score=130.61  Aligned_cols=274  Identities=16%  Similarity=0.118  Sum_probs=179.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHc-------CCCC-Ccch
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD----VITYNVLISGYCRLGEIDNALQVLERM-------SVAP-DVVT  188 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~-~~~~  188 (580)
                      .+......+...|++++|...|+++.+.. +.+    ...+..++..|...|++++|++.++++       +.++ ...+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            34455666777888888888888777764 333    355667777777777777777777664       1011 1234


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCCHhHHHHHHHHHH
Q 043144          189 YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGC-IPDVVTYNVLVNGIC  267 (580)
Q Consensus       189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~  267 (580)
                      +..++..+...|++++|...+++.++...                               +.+. .....++..+...+.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~  134 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISR-------------------------------ELNDKVGEARALYNLGNVYH  134 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHH-------------------------------HhcCchHHHHHHHHHHHHHH
Confidence            44555555555555555555554433210                               0000 001224555566666


Q ss_pred             hcCC--------------------HHHHHHHHHHhhhC----C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc--
Q 043144          268 KEGR--------------------LDEAIKFLNDMPSY----G-CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLK--  320 (580)
Q Consensus       268 ~~g~--------------------~~~A~~~~~~~~~~----~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--  320 (580)
                      ..|+                    +++|...+++....    + .......+..+...+...|++++|...+++..+.  
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  214 (338)
T 3ro2_A          135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK  214 (338)
T ss_dssp             HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            6666                    66666666654321    1 1122456778888999999999999999988753  


Q ss_pred             --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-CC----HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-
Q 043144          321 --GC-SPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCT-PN----SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG-  391 (580)
Q Consensus       321 --~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-  391 (580)
                        +. .....++..+...+...|++++|...+++..+.... .+    ..++..+...+...|++++|...+++..+.. 
T Consensus       215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  294 (338)
T 3ro2_A          215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  294 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence              11 112347888899999999999999999987653111 11    4567888899999999999999999886531 


Q ss_pred             ---CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144          392 ---CYP-DIVTYNTLLTALCKDGKVDVAVEILNQLSNKH  426 (580)
Q Consensus       392 ---~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  426 (580)
                         ..+ ...++..+...|...|++++|...+++..+..
T Consensus       295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence               111 13477889999999999999999999988754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.54  E-value=1e-12  Score=128.13  Aligned_cols=225  Identities=8%  Similarity=-0.046  Sum_probs=122.2

Q ss_pred             HHHHcCChHHHHHHHHHHHhC--CCCCCh--hhHHHHHHH--HHhcCChHHHH-----------HHHHHHHhCCCCCCHH
Q 043144           93 RLVRNGELEEGFKFLESMVYH--GDIPDI--IPCTSLIRG--FCKVGKTRKAT-----------RVMEIVEDSGAVPDVI  155 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~--~~~~~l~~~--~~~~g~~~~A~-----------~~~~~~~~~~~~~~~~  155 (580)
                      .+.+.+++++|..+.+++...  ....|.  ..|..++..  ..-.++++.+.           +.++.+....  .+..
T Consensus        21 ~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~   98 (383)
T 3ulq_A           21 MYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLT   98 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHH
T ss_pred             HHHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCch
Confidence            456788999999999888654  222333  333333322  12233344444           5666554421  1111


Q ss_pred             H------HHHHHHHHHhcCChhHHHHHHHHc-CC---CCC----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-C-
Q 043144          156 T------YNVLISGYCRLGEIDNALQVLERM-SV---APD----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY-P-  219 (580)
Q Consensus       156 ~------~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-  219 (580)
                      .      +...+..+...|++++|+..|+++ ..   .+|    ..++..++..|...|++++|+..++++++.... + 
T Consensus        99 ~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~  178 (383)
T 3ulq_A           99 GLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA  178 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCST
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcc
Confidence            1      222566667788888888888776 21   122    345777777777777777777777776643111 0 


Q ss_pred             ----ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC----C
Q 043144          220 ----DVITYTILIEATCKESGVGQAMKLLDEMRNKGCI-PD----VVTYNVLVNGICKEGRLDEAIKFLNDMPSY----G  286 (580)
Q Consensus       220 ----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~  286 (580)
                          ...++..+...|...|++++|...|++..+.... ++    ..++..+..+|...|++++|+..|++..+.    +
T Consensus       179 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~  258 (383)
T 3ulq_A          179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESN  258 (383)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             chHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Confidence                1234555666666666666666666665532100 01    124555666666666666666666655431    1


Q ss_pred             C-CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 043144          287 C-QPNVITHNIILRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       287 ~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  319 (580)
                      . +....++..+...+...|++++|...+++..+
T Consensus       259 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  292 (383)
T 3ulq_A          259 ILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMA  292 (383)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            1 22234455555555555555555555555543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=3.9e-13  Score=134.52  Aligned_cols=213  Identities=8%  Similarity=-0.021  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          342 LGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKM-DRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN  420 (580)
Q Consensus       342 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  420 (580)
                      ++++...++...... +.+...+..+...+...|++ ++|+..|++.++..+. +...+..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            455555665554432 23566677777777777777 7777777777765322 45677777777777777777777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC--------CCHH
Q 043144          421 QLSNKHCSPVLITYNTVIDGLSKV---------GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE--------GKVD  483 (580)
Q Consensus       421 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~  483 (580)
                      ++.+..  |+...+..+...|...         |++++|...|++..+.. +.+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            777665  5566777777777777         77888888888877653 33566777777777777        7788


Q ss_pred             HHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 043144          484 EAIKLFHDLERLGVR--PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLN  560 (580)
Q Consensus       484 ~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  560 (580)
                      +|...|+++.+..+.  .+...|..+..+|...|++++|++.|+++++.. +.+...+..+..++...|++++|.+.++
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            888888888765431  267778888888888888888888888887663 5566777788888888888887776543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=2.6e-13  Score=135.78  Aligned_cols=214  Identities=11%  Similarity=-0.022  Sum_probs=152.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHH
Q 043144          134 KTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI-DNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLH  210 (580)
Q Consensus       134 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  210 (580)
                      .++++...++...... +.+...+..++..|...|++ ++|++.|+++  ..+.+..+|..++.+|.+.|++++|.+.|+
T Consensus        83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3566666776665543 45667777777777777777 7777777776  223346677777777777777777777777


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHhc---------CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc--------CCHH
Q 043144          211 KQLEKECYPDVITYTILIEATCKE---------SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE--------GRLD  273 (580)
Q Consensus       211 ~~~~~~~~~~~~~~~~li~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  273 (580)
                      ++++..  |+...+..+...+...         |++++|...|+++.+... .+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            777754  5566777777777777         778888888887777642 2567777777777777        7788


Q ss_pred             HHHHHHHHhhhCCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 043144          274 EAIKFLNDMPSYGCQ---PNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILE  350 (580)
Q Consensus       274 ~A~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  350 (580)
                      +|+..|++..+.. +   .+...|..+..++...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus       239 ~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8888888777653 2   466777777778888888888888888877764 3355667777777777788887777665


Q ss_pred             Hhh
Q 043144          351 KMP  353 (580)
Q Consensus       351 ~~~  353 (580)
                      ++.
T Consensus       317 ~~~  319 (474)
T 4abn_A          317 KTK  319 (474)
T ss_dssp             TCC
T ss_pred             ccc
Confidence            553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.51  E-value=3.5e-12  Score=110.06  Aligned_cols=167  Identities=14%  Similarity=0.096  Sum_probs=120.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID  439 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  439 (580)
                      +..+|..+...|...|++++|+..|++.++..+. +..++..+..+|.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            5566777777777777777777777777765433 45577777777777777777777777776654 334556666677


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  519 (580)
                      .+...++++.|...+.+..... +.+...+..+...+...|++++|++.|+++.+..+. +..+|..++.+|...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG-FIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch-hhhHHHHHHHHHHHCCCHHH
Confidence            7777778888888777777653 345667777777888888888888888887766544 67777788888888888888


Q ss_pred             HHHHHHHHHHc
Q 043144          520 AIDILADMVTR  530 (580)
Q Consensus       520 A~~~~~~~~~~  530 (580)
                      |++.++++++.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888887764

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.48  E-value=2.4e-13  Score=128.39  Aligned_cols=246  Identities=14%  Similarity=0.030  Sum_probs=115.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC
Q 043144          291 VITHNIILRSMCSTGRWMDAERLLAEMVLK-------GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH------GC  357 (580)
Q Consensus       291 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~  357 (580)
                      ..++..+...+...|++++|..+++++.+.       ..+.....+..+...|...|++++|...++++.+.      +.
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            445556666666666666666666666542       11223344555556666666666666666555432      10


Q ss_pred             -CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144          358 -TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNT  436 (580)
Q Consensus       358 -~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  436 (580)
                       +....++..+...+...|++++|...++++.+...                            .......+.....+..
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~----------------------------~~~~~~~~~~~~~~~~  158 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIRE----------------------------KVLGKDHPDVAKQLNN  158 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------HHHCTTCHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHH----------------------------HhcCCCChHHHHHHHH
Confidence             11223344444555555555555555554443200                            0000000112233444


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-------CCC---
Q 043144          437 VIDGLSKVGKTEQAMKLLEEMRTK------GLKP-DTITYSSLVGGLSREGKVDEAIKLFHDLERLG-------VRP---  499 (580)
Q Consensus       437 l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~---  499 (580)
                      +...+...|++++|..+++++.+.      +..| ...++..+...+...|++++|...++++.+..       ..+   
T Consensus       159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  238 (311)
T 3nf1_A          159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK  238 (311)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence            555555555555555555555432      1011 12345555555666666666666665554310       000   


Q ss_pred             ----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          500 ----NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       500 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                          ....+..+...+...+.+.+|...++...... +....++..++.+|...|++++|.++++++.+.
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                11122223333344555556666666665431 334567778888888888888888888887653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.45  E-value=6.1e-13  Score=125.52  Aligned_cols=246  Identities=13%  Similarity=0.059  Sum_probs=154.1

Q ss_pred             CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc------C
Q 043144          255 DVVTYNVLVNGICKEGRLDEAIKFLNDMPSY-------GCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLK------G  321 (580)
Q Consensus       255 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~  321 (580)
                      +..++..+...+...|++++|..+|+++.+.       ..+.....+..+...+...|++++|...++++++.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4567888999999999999999999998762       22344567888899999999999999999998864      2


Q ss_pred             C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 043144          322 C-SPSVVTFNILINFLCRKGLLGRAIDILEKMPKH------GC-TPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR---  390 (580)
Q Consensus       322 ~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---  390 (580)
                      . +.....+..+...|...|++++|...++++.+.      +. +.....+..+...+...|++++|+.+++++.+.   
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  185 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT  185 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 223567888999999999999999999988764      11 113345666777777888888888888777653   


Q ss_pred             ---CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC-------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 043144          391 ---GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKH-------CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRT  459 (580)
Q Consensus       391 ---~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  459 (580)
                         +..|. ..++..+..+|...|++++|...++++.+..       ..+.......                       
T Consensus       186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-----------------------  242 (311)
T 3nf1_A          186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM-----------------------  242 (311)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-----------------------
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-----------------------
Confidence               11222 2355666666666666666666666665421       0000000000                       


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          460 KGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       460 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                           ....+..+...+...+.+.++...+....... ..+..++..++.+|...|++++|.+.++++++
T Consensus       243 -----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          243 -----HAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             -----HHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                 01112222223334455555555665555432 12455677777788888888888888877764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.44  E-value=2.3e-11  Score=118.30  Aligned_cols=230  Identities=8%  Similarity=-0.052  Sum_probs=153.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhCCC-CC----CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---C--CC-CHHHHH
Q 043144          332 LINFLCRKGLLGRAIDILEKMPKHGC-TP----NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRG---C--YP-DIVTYN  400 (580)
Q Consensus       332 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~--~~-~~~~~~  400 (580)
                      ....+...|++++|...|++..+... .+    ...++..+...|...|+++.|+..+++..+..   .  .+ ...++.
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            34455677788888877777665311 01    23456667777778888888888877765421   0  11 133667


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCC----CC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 043144          401 TLLTALCKDGKVDVAVEILNQLSNKH----CS-PVLITYNTVIDGLSKVGKTEQAMKLLEEMRT-----KGLKPDTITYS  470 (580)
Q Consensus       401 ~li~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~  470 (580)
                      .+..+|...|++++|...|++..+..    .+ ....++..+...|...|++++|...+++..+     .. +....++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence            77788888888888888887765421    11 1134567778888888888888888888776     32 22356777


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhCCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLERLGV---RPN-VITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      .+...+.+.|++++|...+++..+...   .|. ...+..+...|...++   +.+|+..+++..  ..+.....+..++
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la  343 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA  343 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence            888888888999999998888865321   122 3345666666767777   777777776621  1122345667788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh
Q 043144          544 EGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       544 ~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..|...|++++|.+.++++.+
T Consensus       344 ~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          344 AVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHH
Confidence            888999999999999888765

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.43  E-value=8.2e-11  Score=114.17  Aligned_cols=267  Identities=13%  Similarity=0.053  Sum_probs=165.5

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CCC----HHHHH
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDII----PCTSLIRGFCKVGKTRKATRVMEIVEDSGA-VPD----VITYN  158 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~  158 (580)
                      ......+...|++++|...+++++......+..    +++.+...+...|++++|...+++...... ..+    ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            344556778899999999999988864333322    456677788889999999999988765321 112    23356


Q ss_pred             HHHHHHHhcCChhHHHHHHHHc-------CCC--C-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC----ChhhH
Q 043144          159 VLISGYCRLGEIDNALQVLERM-------SVA--P-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP----DVITY  224 (580)
Q Consensus       159 ~l~~~~~~~g~~~~A~~~~~~~-------~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~  224 (580)
                      .++..+...|++++|...+++.       +.+  | ...++..+...+...|++++|...+++.+......    ...++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6778888899999998888876       111  1 13356667788888888888888888877643211    12356


Q ss_pred             HHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-HhHHH-----HHHHHHHhcCCHHHHHHHHHHhhhCCCCC---CHHHHH
Q 043144          225 TILIEATCKESGVGQAMKLLDEMRNKGCIPD-VVTYN-----VLVNGICKEGRLDEAIKFLNDMPSYGCQP---NVITHN  295 (580)
Q Consensus       225 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~  295 (580)
                      ..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++.......+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            6667777778888888888877764311111 11121     22334667788888888777766532111   122345


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHc----CCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          296 IILRSMCSTGRWMDAERLLAEMVLK----GCSPSV-VTFNILINFLCRKGLLGRAIDILEKMPK  354 (580)
Q Consensus       296 ~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~  354 (580)
                      .+...+...|++++|...++.....    |..++. ..+..+..++...|+.++|...+++...
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            5566666677777777766665432    111111 1344445555566666666666655543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.42  E-value=8.8e-11  Score=113.93  Aligned_cols=302  Identities=14%  Similarity=0.068  Sum_probs=205.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCh----hhH
Q 043144          259 YNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVI----THNIILRSMCSTGRWMDAERLLAEMVLKGC-SPSV----VTF  329 (580)
Q Consensus       259 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~----~~~  329 (580)
                      .......+...|++++|...+++.....-..+..    .+..+...+...|++++|...+++...... ..+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            4445567778999999999999877653222222    455666778889999999999988876411 1122    235


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--C--CHHH
Q 043144          330 NILINFLCRKGLLGRAIDILEKMPKH----GCT--P-NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY--P--DIVT  398 (580)
Q Consensus       330 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~--~~~~  398 (580)
                      ..+...+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++.......  +  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            66778888999999999999887653    211  2 2345566778888999999999999988764322  1  2346


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHH-----HHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 043144          399 YNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-LITYN-----TVIDGLSKVGKTEQAMKLLEEMRTKGLKP---DTITY  469 (580)
Q Consensus       399 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~  469 (580)
                      +..+...+...|++++|...+++.......++ ...+.     ..+..+...|++++|...+++.......+   ....+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            77788888999999999999988765321111 11222     23344678899999999998876543211   13356


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          470 SSLVGGLSREGKVDEAIKLFHDLERL----GVRPNV-ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       470 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      ..+...+...|++++|...++++...    +..++. ..+..+..++...|++++|...+++.....  +.    .....
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~  330 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFIS  330 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHH
Confidence            67778888999999999999887532    211222 356677788888999999999999988652  11    12334


Q ss_pred             HHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          545 GIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       545 ~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      .+...|  +....+++++......
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHHcc--HHHHHHHHHHHhCCCC
Confidence            455555  6777888888877653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=2.1e-11  Score=105.04  Aligned_cols=167  Identities=16%  Similarity=0.062  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043144          397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGL  476 (580)
Q Consensus       397 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~  476 (580)
                      ..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            356667777778888888888888776654 3456777788888888888888888888887653 44677788888888


Q ss_pred             HhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          477 SREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       477 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  556 (580)
                      ...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            8888899999888888765433 67788888888888999999999998888764 666788888888999999999999


Q ss_pred             HHHHHHHhCCC
Q 043144          557 DLLNQLCSRGV  567 (580)
Q Consensus       557 ~~~~~~~~~g~  567 (580)
                      ++++++.+..+
T Consensus       165 ~~~~~~~~~~~  175 (186)
T 3as5_A          165 PHFKKANELDE  175 (186)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHcCC
Confidence            99988877653

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=1.4e-11  Score=128.09  Aligned_cols=163  Identities=13%  Similarity=0.083  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS  477 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  477 (580)
                      +++.+..+|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+..++.
T Consensus        11 al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~   88 (723)
T 4gyw_A           11 SLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLK   88 (723)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            55555555555555555555555555443 2234455555555555555555555555555442 223455555555666


Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144          478 REGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALD  557 (580)
Q Consensus       478 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  557 (580)
                      ..|++++|++.|+++.+..+. +...|..++.+|...|++++|++.|+++++.. +.+...+..++.++...|++++|.+
T Consensus        89 ~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~  166 (723)
T 4gyw_A           89 EMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE  166 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence            666666666666665554433 45555556666666666666666666655542 3445555566666666666666655


Q ss_pred             HHHHHHh
Q 043144          558 LLNQLCS  564 (580)
Q Consensus       558 ~~~~~~~  564 (580)
                      .++++.+
T Consensus       167 ~~~kal~  173 (723)
T 4gyw_A          167 RMKKLVS  173 (723)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.41  E-value=3.1e-11  Score=117.35  Aligned_cols=126  Identities=10%  Similarity=0.055  Sum_probs=53.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCCHHHH
Q 043144          364 YNPVLHGFCKEKKMDRAIEYLEIMVS-----RGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHC----SPVLITY  434 (580)
Q Consensus       364 ~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~  434 (580)
                      +..+...|...|++++|+..+++..+     ..+. ...++..+..++.+.|++++|...+++..+...    +.....+
T Consensus       225 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  303 (378)
T 3q15_A          225 LLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELF  303 (378)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            33344444444444444444444433     2111 123444444445555555555555544433210    1112223


Q ss_pred             HHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          435 NTVIDGLSKVGK---TEQAMKLLEEMRTKGLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLE  493 (580)
Q Consensus       435 ~~l~~~~~~~g~---~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  493 (580)
                      ..+...+...|+   +.+|+..+++.   +..|+ ...+..+...|...|++++|...|+++.
T Consensus       304 ~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al  363 (378)
T 3q15_A          304 LFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVL  363 (378)
T ss_dssp             HHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            333344444444   44444444431   11111 2234445555555666666655555553

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=6.3e-11  Score=106.08  Aligned_cols=201  Identities=12%  Similarity=0.060  Sum_probs=157.2

Q ss_pred             CCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          359 PNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVI  438 (580)
Q Consensus       359 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  438 (580)
                      .|+..+......+...|++++|+..|++.++....++...+..+..++...|++++|...+++..+.. +.+...|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            36788888999999999999999999999987654677777779999999999999999999999876 34567888899


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKPDT-------ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIM  508 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~  508 (580)
                      .+|...|++++|...+++..+.. +.+.       ..|..+...+...|++++|...|+++.+..  |+   ...|..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT--SKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS--CHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC--CCcccHHHHHHHH
Confidence            99999999999999999998763 2344       457788888899999999999999998753  43   56777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144          509 LGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      .+|...|     ...++++...+ ..+...+....  ....|.+++|...+++..+..+....
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~  215 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTE  215 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence            7776544     34455555443 34444444433  44567789999999999998765443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.36  E-value=3.5e-11  Score=103.64  Aligned_cols=161  Identities=14%  Similarity=0.104  Sum_probs=94.1

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|+..+++++.. .+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            4455566666667777777777666554 33455566666666666677777776666666554 445556666666666


Q ss_pred             hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHH
Q 043144          166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKL  243 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  243 (580)
                      ..|++++|.+.++++  ..+.+...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~  166 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPH  166 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHH
Confidence            666666666666655  223344455555555666666666666665555543 22344455555555555555555555


Q ss_pred             HHHHHH
Q 043144          244 LDEMRN  249 (580)
Q Consensus       244 ~~~~~~  249 (580)
                      ++.+.+
T Consensus       167 ~~~~~~  172 (186)
T 3as5_A          167 FKKANE  172 (186)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.35  E-value=2.1e-10  Score=102.68  Aligned_cols=209  Identities=14%  Similarity=0.016  Sum_probs=164.1

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 043144          324 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLL  403 (580)
Q Consensus       324 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li  403 (580)
                      .|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..+++..+..+. +...+..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence            4667888899999999999999999999998865468888888999999999999999999999987433 456899999


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 043144          404 TALCKDGKVDVAVEILNQLSNKHCSPVL-------ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD---TITYSSLV  473 (580)
Q Consensus       404 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~  473 (580)
                      .++...|++++|...+++..+.. +.+.       ..|..+...+...|++++|...|++.++.  .|+   ...+..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            99999999999999999998866 2334       45788888899999999999999999875  454   56777777


Q ss_pred             HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          474 GGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       474 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      ..+...     +..+++++...+.. +...|....  ....+.+++|+..+++..+.. |.+..+...+...
T Consensus       161 ~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i  223 (228)
T 4i17_A          161 VLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence            777544     44556666655433 455554443  345677999999999999873 5556665555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.33  E-value=6e-11  Score=123.40  Aligned_cols=166  Identities=13%  Similarity=0.057  Sum_probs=120.5

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID  439 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  439 (580)
                      +...++.+...|.+.|++++|+..|++.++..+. +..++..+..+|.+.|++++|+..|+++.+.. +.+...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3456777777777777777777777777765322 45577777777777777777777777777655 334667777777


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  519 (580)
                      +|...|++++|++.|++.++.. +-+...|..+..++...|++++|+..|+++.+..+. +...+..++.+|...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            7778888888888888777653 235667778888888888888888888888776544 67777788888888888888


Q ss_pred             HHHHHHHHHH
Q 043144          520 AIDILADMVT  529 (580)
Q Consensus       520 A~~~~~~~~~  529 (580)
                      |.+.++++++
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8877777653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.29  E-value=3.5e-11  Score=111.51  Aligned_cols=228  Identities=14%  Similarity=0.055  Sum_probs=157.6

Q ss_pred             HhcCCHHHHHHHHHHhhhC-------CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHH
Q 043144          337 CRKGLLGRAIDILEKMPKH-------GCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSR------GCYPD-IVTYNTL  402 (580)
Q Consensus       337 ~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-~~~~~~l  402 (580)
                      ...|++++|+..+++.++.       ..+....++..+...|...|++++|+..++++.+.      +..|. ..++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3457777777777666542       22234567888889999999999999999998764      22233 3478889


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNK------H-CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTK------GLKP-DTIT  468 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~  468 (580)
                      ...|...|++++|...++++...      . .+.....+..+...|...|++++|...++++.+.      +-.| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999988754      1 1233567888899999999999999999998764      1122 3457


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHH------HHHHHHHcCCCC
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERL-------GVRP-NVITYNSIMLGLCKARQTYRAID------ILADMVTRSCKP  534 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~------~~~~~~~~~~~~  534 (580)
                      +..+...+...|++++|..+++++.+.       ...+ ....|..+...+...+....+..      .++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888899999999999999999998653       1111 22344444444444333333222      2221110 1122


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          535 TEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       535 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      ...++..++.+|...|++++|.++++++++.
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3457888999999999999999999998764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.27  E-value=1.3e-08  Score=101.59  Aligned_cols=388  Identities=10%  Similarity=-0.009  Sum_probs=186.8

Q ss_pred             HcC-ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-hhHH
Q 043144           96 RNG-ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE-IDNA  173 (580)
Q Consensus        96 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A  173 (580)
                      +.| +.+.|..+|+.++..-  |.              |+++.+..+|++.+..  .|++..|...+....+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            446 3777888888876641  11              8888888888888874  4688888888877777653 3455


Q ss_pred             HHHHHHc----CC-CCCcchHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          174 LQVLERM----SV-APDVVTYNTILRTLC----DSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       174 ~~~~~~~----~~-~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      ..+|+.+    |. +.+...|...+..+.    ..++.+.+..+|++++..  ++..  +..+             ...|
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~--~~~l-------------w~~Y  130 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT--PMGS--LSEL-------------WKDF  130 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS--CCTT--HHHH-------------HHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC--hhhh--HHHH-------------HHHH
Confidence            5666654    32 334566666666543    235566777777777763  2111  1111             1111


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC--C-----hHHHHHHHHHH
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG--R-----WMDAERLLAEM  317 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~-----~~~a~~~~~~~  317 (580)
                      ..+...   .+..+...++.-.  .+.+..|..+++++...--..+...|...+.--...+  -     .+.+..+|+++
T Consensus       131 ~~fE~~---~~~~~~~~~~~~~--~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a  205 (493)
T 2uy1_A          131 ENFELE---LNKITGKKIVGDT--LPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI  205 (493)
T ss_dssp             HHHHHH---HCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH---hccccHHHHHHHH--hHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence            111110   0111111111111  1122333333333321000012233433333222110  0     12344455555


Q ss_pred             HHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 043144          318 VLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV  397 (580)
Q Consensus       318 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  397 (580)
                      +... +.+...|...+..+.+.|+.+.|..++++....  +.+...|..    |....+.++.   ++.+.+.       
T Consensus       206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~---~~~l~~~-------  268 (493)
T 2uy1_A          206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV---YGDLKRK-------  268 (493)
T ss_dssp             HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---HHHHHHH-------
T ss_pred             HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---HHHHHHH-------
Confidence            5432 334455555555555556666666666655554  212221111    1111111111   1111110       


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS  477 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  477 (580)
                              +.. ...+.+     .. . ........|...+..+.+.+..+.|..+|++. .. ...+...|...+..-.
T Consensus       269 --------~~~-~~~~~~-----~~-~-~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~  330 (493)
T 2uy1_A          269 --------YSM-GEAESA-----EK-V-FSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEY  330 (493)
T ss_dssp             --------TC------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHH
T ss_pred             --------HHh-hccchh-----hh-h-cccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHH
Confidence                    000 000000     00 0 00011244555666666667788888888877 32 1234444433222222


Q ss_pred             hCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          478 REG-KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       478 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  556 (580)
                      ..+ +.+.|..+|+...+..+. +...|...+......|+.+.|..+|+++.     .....|...+..-...|+.+.+.
T Consensus       331 ~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r  404 (493)
T 2uy1_A          331 YATGSRATPYNIFSSGLLKHPD-STLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFR  404 (493)
T ss_dssp             HHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHH
Confidence            223 588888888887754322 34555666666677788888888888762     24677777777667778888888


Q ss_pred             HHHHHHHh
Q 043144          557 DLLNQLCS  564 (580)
Q Consensus       557 ~~~~~~~~  564 (580)
                      +++++..+
T Consensus       405 ~v~~~~~~  412 (493)
T 2uy1_A          405 ELVDQKMD  412 (493)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.24  E-value=1.3e-10  Score=107.70  Aligned_cols=229  Identities=14%  Similarity=0.016  Sum_probs=160.1

Q ss_pred             HHhcCChHHHHHHHHHHHHc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhC------CC-CCCHhhHHH
Q 043144          301 MCSTGRWMDAERLLAEMVLK-------GCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKH------GC-TPNSLSYNP  366 (580)
Q Consensus       301 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~  366 (580)
                      ....|++++|..++++.++.       ..+....++..+...|...|++++|...++++.+.      +. +....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34568888888888877652       22334567888999999999999999999998764      11 223567888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC------CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhC------C-CCCCHH
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSR------GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNK------H-CSPVLI  432 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~-~~~~~~  432 (580)
                      +...|...|++++|...+++..+.      ...|+ ..++..+...+...|++++|...++++.+.      . .+....
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            899999999999999999998764      11233 458889999999999999999999998764      1 122356


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhCCC------HHHHHHHHHHHHhCCCC
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTK-------GLKP-DTITYSSLVGGLSREGK------VDEAIKLFHDLERLGVR  498 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~-------~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~  498 (580)
                      ++..+...|...|++++|..+++++.+.       ...+ ....+..+...+...+.      +.++...++..... ..
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  249 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVD-SP  249 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCC-CH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCC-CH
Confidence            7888999999999999999999998753       1122 22234444434433333      22232222222111 11


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          499 PNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ....++..++.+|...|++++|..+++++++.
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            23557888999999999999999999998753

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.22  E-value=1.7e-08  Score=100.70  Aligned_cols=210  Identities=9%  Similarity=-0.088  Sum_probs=127.6

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hHHHHHHHHHHHhC-CC-CCCHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGK-TRKATRVMEIVEDS-GA-VPDVITYNVLI  161 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~-~~-~~~~~~~~~l~  161 (580)
                      ..|...+..+-. |+++.+..+|++++..  .|+..+|...+....+.++ .+....+|+..... |. +.+...|...+
T Consensus        16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi   92 (493)
T 2uy1_A           16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI   92 (493)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence            355555555554 8999999999999885  4688899999988777764 45677888887763 32 45778898888


Q ss_pred             HHHHh----cCChhHHHHHHHHc-CCCCCc--chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 043144          162 SGYCR----LGEIDNALQVLERM-SVAPDV--VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKE  234 (580)
Q Consensus       162 ~~~~~----~g~~~~A~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  234 (580)
                      ..+..    .|+.+.+..+|+++ .+|+..  ..|......- +......+..++.+                   .  .
T Consensus        93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE-~~~~~~~~~~~~~~-------------------~--~  150 (493)
T 2uy1_A           93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFE-LELNKITGKKIVGD-------------------T--L  150 (493)
T ss_dssp             HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHH-HHHCHHHHHHHHHH-------------------H--H
T ss_pred             HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHH-HHhccccHHHHHHH-------------------H--h
Confidence            87643    46788899999998 543321  1222222111 11111222222211                   1  1


Q ss_pred             CCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcC--C-----HHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144          235 SGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEG--R-----LDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRW  307 (580)
Q Consensus       235 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~-----~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~  307 (580)
                      +.+..|..+++.+...-...+...|...+..-...+  -     .+.+..+|+++.... +.+...|...+..+...|+.
T Consensus       151 ~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~  229 (493)
T 2uy1_A          151 PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQK  229 (493)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence            234445555554443100113446666555432221  1     234667888877643 45677788888888888899


Q ss_pred             HHHHHHHHHHHHc
Q 043144          308 MDAERLLAEMVLK  320 (580)
Q Consensus       308 ~~a~~~~~~~~~~  320 (580)
                      +.|..+++..+..
T Consensus       230 ~~ar~i~erAi~~  242 (493)
T 2uy1_A          230 EKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC
Confidence            9999999988877

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.21  E-value=4.4e-10  Score=104.67  Aligned_cols=157  Identities=11%  Similarity=-0.044  Sum_probs=77.8

Q ss_pred             HHHhcCChHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHc-CCC---CC----cchHHHHHH
Q 043144          128 GFCKVGKTRKATRVMEIVEDS----GAVPD-VITYNVLISGYCRLGEIDNALQVLERM-SVA---PD----VVTYNTILR  194 (580)
Q Consensus       128 ~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---~~----~~~~~~l~~  194 (580)
                      .|...|++++|...|.+....    +.+++ ..+|+.++.+|...|++++|+..|++. ...   .+    ..+++.++.
T Consensus        46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~  125 (292)
T 1qqe_A           46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (292)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            455666666666666655432    21111 345666666666666666666666654 100   11    234555555


Q ss_pred             HHHhc-CChhHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHh------HHHHH
Q 043144          195 TLCDS-GKLNLAMEVLHKQLEKECYP-D----VITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVV------TYNVL  262 (580)
Q Consensus       195 ~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l  262 (580)
                      +|... |++++|+..|++.++..... +    ..++..+...+.+.|++++|+..|++..+........      .|..+
T Consensus       126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  205 (292)
T 1qqe_A          126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (292)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            55554 66666666665555431100 0    2234445555555555555555555555432211110      33444


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhh
Q 043144          263 VNGICKEGRLDEAIKFLNDMPS  284 (580)
Q Consensus       263 ~~~~~~~g~~~~A~~~~~~~~~  284 (580)
                      ..++...|++++|+..|++..+
T Consensus       206 g~~~~~~g~~~~A~~~~~~al~  227 (292)
T 1qqe_A          206 GLCQLAATDAVAAARTLQEGQS  227 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            4455555555555555555443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.20  E-value=5.3e-10  Score=104.16  Aligned_cols=197  Identities=11%  Similarity=-0.024  Sum_probs=149.8

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CC--CHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYH----GDIPD-IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA---VP--DVI  155 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~  155 (580)
                      .+......|...|++++|+..|++++..    |.+++ ..+++.+..+|.+.|++++|+..|++..+...   .+  ...
T Consensus        39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~  118 (292)
T 1qqe_A           39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (292)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5667778899999999999999998654    32222 46889999999999999999999998876421   11  145


Q ss_pred             HHHHHHHHHHhc-CChhHHHHHHHHc-CCCC---C----cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----
Q 043144          156 TYNVLISGYCRL-GEIDNALQVLERM-SVAP---D----VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVI----  222 (580)
Q Consensus       156 ~~~~l~~~~~~~-g~~~~A~~~~~~~-~~~~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----  222 (580)
                      +++.++.+|... |++++|+..|++. ...|   +    ..++..++..+.+.|++++|+..|+++.+........    
T Consensus       119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  198 (292)
T 1qqe_A          119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (292)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence            788899999996 9999999999987 2111   1    3468899999999999999999999999875433221    


Q ss_pred             --hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH------hHHHHHHHHHH--hcCCHHHHHHHHHHhhh
Q 043144          223 --TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV------VTYNVLVNGIC--KEGRLDEAIKFLNDMPS  284 (580)
Q Consensus       223 --~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~--~~g~~~~A~~~~~~~~~  284 (580)
                        .+..+..++...|++++|...|++..+..  |+.      ..+..++..+.  ..+++++|+..|+++..
T Consensus       199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          199 KDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence              56778888999999999999999987652  221      12344555554  45678899998888764

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.19  E-value=1.3e-09  Score=87.99  Aligned_cols=131  Identities=14%  Similarity=0.172  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+..+. +...+..++..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            45566677777778888888887776653 335666777777777888888888888887765433 5667777788888


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          513 KARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       513 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      ..|++++|.+.++++.+.. +.+...+..++.++...|++++|.+.++++.+.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            8888888888888887663 5567777888888888888888888888877654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.19  E-value=5.8e-09  Score=95.02  Aligned_cols=243  Identities=10%  Similarity=0.038  Sum_probs=145.1

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHH
Q 043144          264 NGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLG  343 (580)
Q Consensus       264 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  343 (580)
                      +-..-.|.+..++.-..++...   .......-+.+++...|++...         ....|....+..+...+ ..+   
T Consensus        21 kn~fy~G~yq~~i~e~~~~~~~---~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~---   84 (310)
T 3mv2_B           21 KQNYYTGNFVQCLQEIEKFSKV---TDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK---   84 (310)
T ss_dssp             HHHHTTTCHHHHTHHHHTSSCC---CCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT---
T ss_pred             HHHHHhhHHHHHHHHHHhcCcc---chHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc---
Confidence            4445578888888754444321   1223334455777777776642         11123333333333333 222   


Q ss_pred             HHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 043144          344 RAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKVDVAVEILNQL  422 (580)
Q Consensus       344 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~  422 (580)
                       ++..|++..+.+ .++..++..+..++...|++++|++++.+.+..+..+ +...+..++..+.+.|+.+.|.+.++.|
T Consensus        85 -a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 -NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             -CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence             667777776654 3355555677777888888888888888776654322 4457777778888888888888888888


Q ss_pred             HhCCCCC-----CHHHHHHHHHH--HHhCC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          423 SNKHCSP-----VLITYNTVIDG--LSKVG--KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE  493 (580)
Q Consensus       423 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  493 (580)
                      .+..  |     +..+...++.+  ....|  ++++|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus       163 ~~~~--~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          163 TNAI--EDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HHHS--CHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhcC--ccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            7654  4     23444445444  22233  778888888887654  3443333334447777888888888887654


Q ss_pred             hCCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          494 RLGV---------RPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       494 ~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +..+         ..|+.++..++......|+  +|.+++.++.+.
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            3210         1245566455555555665  677777777765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.16  E-value=6e-10  Score=97.94  Aligned_cols=110  Identities=11%  Similarity=0.047  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHH----------------HHHHHHhcCChHHHHHHHHHHHhCCC
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTS----------------LIRGFCKVGKTRKATRVMEIVEDSGA  150 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~g~~~~A~~~~~~~~~~~~  150 (580)
                      +......+...|++++|+..|++++.. .|.+...|..                +..+|.+.|++++|...|++..+.. 
T Consensus         7 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-   84 (208)
T 3urz_A            7 MLQKVSAAIEAGQNGQAVSYFRQTIAL-NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-   84 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence            344556777888888888888888775 2333444544                5555555555555555555555544 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHh
Q 043144          151 VPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCD  198 (580)
Q Consensus       151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~  198 (580)
                      |.++..+..++.+|...|++++|+..|+++ . .|.+..+|..++.+|..
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL  134 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            344555555555555555555555555554 1 12234445555554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.16  E-value=9.6e-10  Score=100.61  Aligned_cols=95  Identities=9%  Similarity=0.050  Sum_probs=75.2

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCCHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD---IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA--VPDVITYNV  159 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~  159 (580)
                      ..+..+...+.+.|++++|+..|++++... |.+   ...+..++.+|.+.|++++|...|+++.+..+  +.....+..
T Consensus        16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            356677788889999999999999998763 333   56788888889999999999999999888642  123456777


Q ss_pred             HHHHHHh--------cCChhHHHHHHHHc
Q 043144          160 LISGYCR--------LGEIDNALQVLERM  180 (580)
Q Consensus       160 l~~~~~~--------~g~~~~A~~~~~~~  180 (580)
                      ++.++..        .|++++|+..|+++
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~  123 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLF  123 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHH
Confidence            8888888        88899999998887

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.15  E-value=1e-08  Score=93.45  Aligned_cols=12  Identities=8%  Similarity=-0.006  Sum_probs=5.2

Q ss_pred             HHhcCChHHHHH
Q 043144          129 FCKVGKTRKATR  140 (580)
Q Consensus       129 ~~~~g~~~~A~~  140 (580)
                      ..-.|++..++.
T Consensus        23 ~fy~G~yq~~i~   34 (310)
T 3mv2_B           23 NYYTGNFVQCLQ   34 (310)
T ss_dssp             HHTTTCHHHHTH
T ss_pred             HHHhhHHHHHHH
Confidence            334444444444

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.15  E-value=1.5e-09  Score=99.39  Aligned_cols=185  Identities=12%  Similarity=-0.021  Sum_probs=117.5

Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC---C-cc
Q 043144          116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD---VITYNVLISGYCRLGEIDNALQVLERM-SVAP---D-VV  187 (580)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~---~-~~  187 (580)
                      +.+...+...+..+.+.|++++|...|+.+.+.. |.+   ...+..++.+|.+.|++++|+..|+++ ...|   . ..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHH
Confidence            4456677788888899999999999999998875 334   677888899999999999999999987 2222   2 34


Q ss_pred             hHHHHHHHHHh--------cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHH
Q 043144          188 TYNTILRTLCD--------SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTY  259 (580)
Q Consensus       188 ~~~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  259 (580)
                      ++..++.++..        .|++++|+..|+++++..+. +......+              ..+..+...    -...+
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~  151 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHH
T ss_pred             HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHH
Confidence            67788888888        89999999999988876421 22222111              001111000    01123


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhCCCC--CCHHHHHHHHHHHHhc----------CChHHHHHHHHHHHHc
Q 043144          260 NVLVNGICKEGRLDEAIKFLNDMPSYGCQ--PNVITHNIILRSMCST----------GRWMDAERLLAEMVLK  320 (580)
Q Consensus       260 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~  320 (580)
                      ..+...|.+.|++++|+..|+++.+....  .....+..+..++...          |++++|...|+.+++.
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            44555666666666666666666543210  1233455555555544          6666666666666654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.14  E-value=2.7e-08  Score=91.71  Aligned_cols=217  Identities=10%  Similarity=0.006  Sum_probs=116.3

Q ss_pred             HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc---CChH
Q 043144          343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK--KMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL----CKD---GKVD  413 (580)
Q Consensus       343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~----~~~---g~~~  413 (580)
                      ++|+.+++.++..++. +...|+.-...+...+  ++++++..++.++...++ +..+|+.-...+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence            3555555555554332 3344444444555555  555555555555554332 222333322222    333   4556


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC------HHHH
Q 043144          414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTE--QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK------VDEA  485 (580)
Q Consensus       414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~~A  485 (580)
                      +++.+++.+.+.+ +.+..+|+.-...+.+.|.++  +++++++++++.+ .-|...|+.-...+...|.      ++++
T Consensus       128 ~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            6666666665544 344555555555555555555  6666666666554 2255555555555555554      6666


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          486 IKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR-AIDILADMVTRS--CKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       486 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      ++.+++++...+. |...|+.+...+.+.|+... +..+..++.+.+  -+.+...+..++.+|.+.|+.++|.++++.+
T Consensus       206 l~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            6666666655544 66666666666666665333 334444444321  1345566666666666667777777777776


Q ss_pred             Hh
Q 043144          563 CS  564 (580)
Q Consensus       563 ~~  564 (580)
                      .+
T Consensus       285 ~~  286 (306)
T 3dra_A          285 KS  286 (306)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.14  E-value=6.9e-10  Score=116.11  Aligned_cols=183  Identities=11%  Similarity=0.001  Sum_probs=139.2

Q ss_pred             HHcCChHHHHHHHHHHH--------hCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           95 VRNGELEEGFKFLESMV--------YHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        95 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      ...|++++|++.+++++        .. .+.+...+..+..++...|++++|...|+++.+.. +.+...|..++.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            67889999999999988        33 45566788888888999999999999999888876 6678888888999999


Q ss_pred             cCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          167 LGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      .|++++|++.|+++ . .+.+...|..++.++.+.|++++ ++.|+++++.+ +.+...|..+..++.+.|++++|...|
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999887 2 34467788888888889999988 88888888765 235677888888888888888888888


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCC--------HHHHHHHHHHh
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGR--------LDEAIKFLNDM  282 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~  282 (580)
                      +++.+.+. .+...+..+..++...++        +++|.+.+..+
T Consensus       558 ~~al~l~P-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          558 DEVPPTSR-HFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HTSCTTST-THHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HhhcccCc-ccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            88876532 135667677777655443        44555555444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.13  E-value=1.6e-09  Score=87.40  Aligned_cols=128  Identities=15%  Similarity=0.193  Sum_probs=80.4

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|+.+|++++.. .+.+...+..++..+...|++++|..+++++.... +.+...+..++..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHc-CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            3555666677777777777777777655 23455566666666777777777777777766654 445556666666666


Q ss_pred             hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144          166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  215 (580)
                      ..|++++|...++++  ..+.+..++..++..+.+.|++++|...++++...
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            666776666666665  12234455556666666666666666666665543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.12  E-value=2.4e-09  Score=94.05  Aligned_cols=182  Identities=9%  Similarity=-0.017  Sum_probs=95.6

Q ss_pred             HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          361 SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIV-TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVID  439 (580)
Q Consensus       361 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  439 (580)
                      ...+......+...|++++|+..|++.++.  .|+.. .+...     .....              ..........+..
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~-----~~~~~--------------~~~~~~~~~~lg~   62 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWT-----NVDKN--------------SEISSKLATELAL   62 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHH-----HSCTT--------------SHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHh-----hhcch--------------hhhhHHHHHHHHH
Confidence            334445556677788888888888888765  33322 33330     00000              0001112233555


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC--H
Q 043144          440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ--T  517 (580)
Q Consensus       440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~  517 (580)
                      +|...|++++|...|++.++.. +-+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|+  .
T Consensus        63 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~  140 (208)
T 3urz_A           63 AYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEK  140 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHH
Confidence            6666666666666666666543 234556666666666666666666666666655433 55566666666554433  2


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          518 YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       518 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      +.+...++....  ..|....+..+..++...|++++|...|+++++..+
T Consensus       141 ~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P  188 (208)
T 3urz_A          141 KKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP  188 (208)
T ss_dssp             HHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            333444444321  122222344445555566666666666666666544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.12  E-value=2.9e-09  Score=93.74  Aligned_cols=176  Identities=15%  Similarity=0.019  Sum_probs=116.4

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----ChhHHHHHH
Q 043144          102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG----EIDNALQVL  177 (580)
Q Consensus       102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~  177 (580)
                      +|++.|+++.+.|   +...+..+...|...+++++|..+|++..+.+   ++..+..|...|.. +    ++++|+.+|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            5777777777764   66677777778888888888888888887765   56667777777776 5    777888887


Q ss_pred             HHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCC-CChhhHHHHHHHHHh----cCCHhHHHHHHHHHH
Q 043144          178 ERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKECY-PDVITYTILIEATCK----ESGVGQAMKLLDEMR  248 (580)
Q Consensus       178 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~  248 (580)
                      ++.-...+..++..|...|..    .+++++|+..|++..+.+.. .+...+..|...|..    .+++++|...|+...
T Consensus        77 ~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           77 EKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            777223456667777777766    66777777777777765511 015566666666666    566777777777666


Q ss_pred             HcCCCCCHhHHHHHHHHHHhc-C-----CHHHHHHHHHHhhhCC
Q 043144          249 NKGCIPDVVTYNVLVNGICKE-G-----RLDEAIKFLNDMPSYG  286 (580)
Q Consensus       249 ~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~  286 (580)
                      +.  ..+...+..|...|... |     +.++|..+|++..+.|
T Consensus       157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            55  12344555566655542 2     5666666666665544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.11  E-value=8.4e-08  Score=88.40  Aligned_cols=231  Identities=9%  Similarity=-0.003  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH----Hhc---CCHH
Q 043144          308 MDAERLLAEMVLKGCSPSVVTFNILINFLCRKG--LLGRAIDILEKMPKHGCTPNSLSYNPVLHGF----CKE---KKMD  378 (580)
Q Consensus       308 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~  378 (580)
                      ++|+.+++.++..+ +.+..+|+.-...+...|  +++++++.++.++...+. +..+|+.-...+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCHH
Confidence            45566666555543 233445555555555555  666666666666655333 444444443333    333   5566


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC------HHHH
Q 043144          379 RAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD--VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK------TEQA  450 (580)
Q Consensus       379 ~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A  450 (580)
                      +++.+++++++..++ +..+|+.-.-++.+.|.++  +++++++.+.+.+ +.+...|+.-...+...|.      ++++
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            677777766665433 5556666666666666666  6777777766655 3455566665555555555      7788


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKV-DEAIKLFHDLERLG--VRPNVITYNSIMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      ++.+++++... +-|...|+.+...+.+.|+. +++..+..++.+.+  -..+...+..++.+|.+.|+.++|.++++.+
T Consensus       206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            88888887764 34677787777777777763 33445666554432  1236777888888888888888888888888


Q ss_pred             HHcCCCCCHHHHHHHH
Q 043144          528 VTRSCKPTEATYTILI  543 (580)
Q Consensus       528 ~~~~~~~~~~~~~~l~  543 (580)
                      .+.--|.....|...+
T Consensus       285 ~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          285 KSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHTTCGGGHHHHHHHH
T ss_pred             HhccChHHHHHHHHHH
Confidence            7642244455555443

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.10  E-value=1.3e-09  Score=113.95  Aligned_cols=172  Identities=10%  Similarity=0.019  Sum_probs=131.9

Q ss_pred             HhcCChHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhc
Q 043144          130 CKVGKTRKATRVMEIVE--------DSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDS  199 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~  199 (580)
                      ...|++++|++.+++..        +.. +.+...+..++.+|...|++++|+..|+++  ..+.+...|..++.++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence            77888999999998887        443 556778888888888899999999988887  2345667888888888899


Q ss_pred             CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHH
Q 043144          200 GKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFL  279 (580)
Q Consensus       200 g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  279 (580)
                      |++++|++.|+++++.. +.+...+..+..++.+.|++++ +..|+++.+.+.. +...|..+..++.+.|++++|+..|
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999888865 2356778888888888899988 8888888876432 6778888888888899999999998


Q ss_pred             HHhhhCCCCCCHHHHHHHHHHHHhcCC
Q 043144          280 NDMPSYGCQPNVITHNIILRSMCSTGR  306 (580)
Q Consensus       280 ~~~~~~~~~~~~~~~~~ll~~~~~~~~  306 (580)
                      ++..+.+ +.+...+..+..++...++
T Consensus       558 ~~al~l~-P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPTS-RHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred             HhhcccC-cccHHHHHHHHHHHHccCC
Confidence            8887653 3335566666666655444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.10  E-value=4.7e-10  Score=92.68  Aligned_cols=146  Identities=14%  Similarity=0.004  Sum_probs=99.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC
Q 043144          402 LLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK  481 (580)
Q Consensus       402 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~  481 (580)
                      |..++...|++++|+..+....... +.+...+..+...|.+.|++++|.+.|++.++.. +-+..+|..+..++...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence            3444555667777777777765543 1223445567777788888888888888877654 3366777888888888888


Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144          482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDI-LADMVTRSCKPTEATYTILIEGIAYEGL  551 (580)
Q Consensus       482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  551 (580)
                      +++|...|+++.+..+. +...|..++.+|...|++++|.+. ++++++.. |.++.+|......+...|+
T Consensus        81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            88888888888776544 677777888888888887765554 57777653 5567777777777776664

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.10  E-value=1.4e-08  Score=90.40  Aligned_cols=189  Identities=10%  Similarity=0.015  Sum_probs=123.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH--HHHH
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCY-PD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVL--ITYN  435 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~  435 (580)
                      +...+..+...+...|++++|+..|+++++..+. |. ...+..+..++.+.|++++|+..|+++.+.......  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4455666778888899999999999998875432 21 347778888899999999999999998876522111  2344


Q ss_pred             HHHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144          436 TVIDGLSK------------------VGKTEQAMKLLEEMRTKGLKPDT-ITYSSLVGGLSREGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       436 ~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  496 (580)
                      .+..++..                  .|++++|...|+++++..  |+. ..+......          ..+....    
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHH----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHH----
Confidence            44555443                  344555555555555431  221 111110000          0000000    


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144          497 VRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTE---ATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       497 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  569 (580)
                          ......++..|...|++++|+..++++++.. |.++   ..+..++.++.+.|++++|.+.++++...++..
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                0112356778899999999999999999862 3333   578899999999999999999999999887654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.09  E-value=1.1e-09  Score=93.40  Aligned_cols=159  Identities=9%  Similarity=-0.002  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HH
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG-YC  165 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~  165 (580)
                      +..+...+.+.|++++|+..|++++.. .|.+...+..+..++...|++++|...|+++.... | ++..+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~-p-~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDE-LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY-Q-DNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHH-HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG-C-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc-C-ChHHHHHHHHHHHH
Confidence            445556666666666666666666554 33455566666666666666666666666665543 2 44333222211 11


Q ss_pred             hcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHhcCCHhHHHH
Q 043144          166 RLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP-DVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      ..++..+|+..+++. . .|.+...+..++.++...|++++|...|+++++..+.+ +...+..+...+...|+.++|..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            222223345555554 1 22334555555556666666666666666555544221 23345555555555555555555


Q ss_pred             HHHHHH
Q 043144          243 LLDEMR  248 (580)
Q Consensus       243 ~~~~~~  248 (580)
                      .|++.+
T Consensus       166 ~y~~al  171 (176)
T 2r5s_A          166 KYRRQL  171 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.08  E-value=1.5e-09  Score=92.55  Aligned_cols=160  Identities=11%  Similarity=0.012  Sum_probs=91.9

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHH-HHh
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRT-LCD  198 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~-~~~  198 (580)
                      .+......+...|++++|...|++..+.. |.+...+..++.++...|++++|+..|+++ ...|+...+..+... +..
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence            45556667777888888888887776654 556777777788888888888888888776 323333222222211 112


Q ss_pred             cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCHHHHHH
Q 043144          199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRLDEAIK  277 (580)
Q Consensus       199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  277 (580)
                      .+....|+..+++.++.. +.+...+..+...+...|++++|...|+++.+..+.+ +...+..+..++...|+.++|..
T Consensus        87 ~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           87 QAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            222334555566555543 1234555555566666666666666666655543221 23355555556666666666665


Q ss_pred             HHHHh
Q 043144          278 FLNDM  282 (580)
Q Consensus       278 ~~~~~  282 (580)
                      .|++.
T Consensus       166 ~y~~a  170 (176)
T 2r5s_A          166 KYRRQ  170 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=6.6e-09  Score=91.47  Aligned_cols=176  Identities=13%  Similarity=0.048  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcC----ChhHHHHHHHHH
Q 043144          137 KATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSG----KLNLAMEVLHKQ  212 (580)
Q Consensus       137 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~  212 (580)
                      +|.++|++..+.|   ++..+..|+..|...+++++|+..|++.-...+..++..|...|.. +    ++++|+..|++.
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A   79 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKA   79 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHH
Confidence            4666677666654   5666777777777777777777777776222355666666666666 5    677777777777


Q ss_pred             HhCCCCCChhhHHHHHHHHHh----cCCHhHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHh----cCCHHHHHHHHHHhh
Q 043144          213 LEKECYPDVITYTILIEATCK----ESGVGQAMKLLDEMRNKGCI-PDVVTYNVLVNGICK----EGRLDEAIKFLNDMP  283 (580)
Q Consensus       213 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~  283 (580)
                      .+.+   +...+..+...|..    .+++++|...|++..+.+.. .++..+..|...|..    .+++++|+.+|++..
T Consensus        80 ~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~  156 (212)
T 3rjv_A           80 VEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS  156 (212)
T ss_dssp             HHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred             HHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence            6654   55566666666655    56667777777666655321 014556666666665    556666666666665


Q ss_pred             hCCCCCCHHHHHHHHHHHHhc-C-----ChHHHHHHHHHHHHcC
Q 043144          284 SYGCQPNVITHNIILRSMCST-G-----RWMDAERLLAEMVLKG  321 (580)
Q Consensus       284 ~~~~~~~~~~~~~ll~~~~~~-~-----~~~~a~~~~~~~~~~~  321 (580)
                      +.  ..+...+..+...|... |     ++++|..+|+...+.|
T Consensus       157 ~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          157 SL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             Hc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            54  12333455555555432 2     5666666666666554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.07  E-value=4.2e-10  Score=93.01  Aligned_cols=120  Identities=10%  Similarity=0.015  Sum_probs=64.9

Q ss_pred             HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043144           94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNA  173 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  173 (580)
                      +...|++++|+..++.+... .+.+...+..+...|.+.|++++|.+.|++.++.. |.++.+|..++.+|...|++++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~-~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPS-PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCS-HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcChHHHHHHHHHHhccc-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHH
Confidence            33445566666666665443 22233445555666666666666666666666554 44555666666666666666666


Q ss_pred             HHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHH-HHHHHhC
Q 043144          174 LQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEV-LHKQLEK  215 (580)
Q Consensus       174 ~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~  215 (580)
                      +..|+++ .. |.+..+|..++..|.+.|++++|.+. ++++++.
T Consensus        85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l  129 (150)
T 4ga2_A           85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL  129 (150)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            6666555 22 22344555555555555555544433 3444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.06  E-value=9.1e-09  Score=91.61  Aligned_cols=183  Identities=10%  Similarity=0.005  Sum_probs=122.9

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCH---HHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDI-P-DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDV---ITYNV  159 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~  159 (580)
                      ..+..+...+.+.|++++|+..|++++...+. + ....+..++.+|.+.|++++|+..|+++.+..+ .+.   ..+..
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~~~~~~a~~~   83 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-THPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CCCcHHHHHHH
Confidence            35667788899999999999999999876322 1 135788889999999999999999999988752 232   24555


Q ss_pred             HHHHHHh------------------cCChhHHHHHHHHc-CCCCCc-chHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC
Q 043144          160 LISGYCR------------------LGEIDNALQVLERM-SVAPDV-VTYNTILRTLCDSGKLNLAMEVLHKQLEKECYP  219 (580)
Q Consensus       160 l~~~~~~------------------~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  219 (580)
                      ++.++..                  .|++++|+..|+++ ...|+. .++........          +....       
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~----------~~~~~-------  146 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVF----------LKDRL-------  146 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHH----------HHHHH-------
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHH----------HHHHH-------
Confidence            6666654                  35566666666665 322332 22221111000          00000       


Q ss_pred             ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          220 DVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSYG  286 (580)
Q Consensus       220 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  286 (580)
                       ......+...|.+.|++++|...|+.+.+..+...  ...+..+..+|.+.|+.++|.+.++.+...+
T Consensus       147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence             01123466788899999999999999988632211  2467888899999999999999999887763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.06  E-value=5.7e-09  Score=107.25  Aligned_cols=165  Identities=12%  Similarity=0.007  Sum_probs=118.4

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 043144          374 EKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKL  453 (580)
Q Consensus       374 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  453 (580)
                      .|++++|+..+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47888999999988776332 56788888889999999999999999988876 34577888888899999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 043144          454 LEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA---RQTYRAIDILADMVTR  530 (580)
Q Consensus       454 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  530 (580)
                      +++..+.. +.+...+..+..++...|++++|.+.++++.+..+. +...+..+..++...   |++++|.+.++++++.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99988764 346778888889999999999999999998876544 677888888899888   9999999999998876


Q ss_pred             CCCCCHHHHHHHH
Q 043144          531 SCKPTEATYTILI  543 (580)
Q Consensus       531 ~~~~~~~~~~~l~  543 (580)
                      + +.+...|..+.
T Consensus       158 ~-p~~~~~~~~l~  169 (568)
T 2vsy_A          158 G-VGAVEPFAFLS  169 (568)
T ss_dssp             T-CCCSCHHHHTT
T ss_pred             C-CcccChHHHhC
Confidence            4 44444454444

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.06  E-value=5e-09  Score=97.11  Aligned_cols=165  Identities=12%  Similarity=-0.021  Sum_probs=105.1

Q ss_pred             CCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchH-HHHH
Q 043144          116 IPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTY-NTIL  193 (580)
Q Consensus       116 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~-~~l~  193 (580)
                      +.+...+..+...+...|++++|...|+++.... |.+...+..++..+.+.|++++|...++++ ...|+.... ....
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~  192 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQ  192 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHH
Confidence            3445566667777777777777777777777665 556677777777777777777777777776 333443322 2222


Q ss_pred             HHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhcCCH
Q 043144          194 RTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIP-DVVTYNVLVNGICKEGRL  272 (580)
Q Consensus       194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  272 (580)
                      ..+...++.++|...+++.+... +.+...+..+...+...|++++|...|.++.+..+.. +...+..++..+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            33555666666777777766654 2355666666777777777777777777766653221 144566666666666766


Q ss_pred             HHHHHHHHHh
Q 043144          273 DEAIKFLNDM  282 (580)
Q Consensus       273 ~~A~~~~~~~  282 (580)
                      ++|...|++.
T Consensus       272 ~~a~~~~r~a  281 (287)
T 3qou_A          272 DALASXYRRQ  281 (287)
T ss_dssp             CHHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            6666666554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.01  E-value=7.3e-09  Score=96.01  Aligned_cols=162  Identities=12%  Similarity=0.038  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH
Q 043144          397 VTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYS-SLVGG  475 (580)
Q Consensus       397 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~l~~~  475 (580)
                      ..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++...  .|+..... .....
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~~  194 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHHH
Confidence            345555566666666666666666666554 234555666666666677777777766666543  23333222 22223


Q ss_pred             HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHH
Q 043144          476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT--EATYTILIEGIAYEGLAK  553 (580)
Q Consensus       476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~  553 (580)
                      +...++.++|...++++....+. +...+..+..+|...|++++|+..++++++.. +.+  ...+..++..+...|+.+
T Consensus       195 l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          195 LLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             HHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcCCCC
Confidence            45556666677777776665443 56666777777777777777777777777653 222  556777777777777777


Q ss_pred             HHHHHHHHHH
Q 043144          554 EALDLLNQLC  563 (580)
Q Consensus       554 ~A~~~~~~~~  563 (580)
                      +|...+++..
T Consensus       273 ~a~~~~r~al  282 (287)
T 3qou_A          273 ALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHH
T ss_pred             cHHHHHHHHH
Confidence            7777766654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.98  E-value=2.4e-08  Score=102.62  Aligned_cols=156  Identities=11%  Similarity=-0.059  Sum_probs=113.3

Q ss_pred             cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 043144          339 KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEI  418 (580)
Q Consensus       339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  418 (580)
                      .|++++|...+++..+.... +...+..+...+...|++++|...+++..+.... +...+..+..+|...|++++|...
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47888999999888876433 6778888888999999999999999998876433 567888888999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHhC
Q 043144          419 LNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE---GKVDEAIKLFHDLERL  495 (580)
Q Consensus       419 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  495 (580)
                      +++..+.. +.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+...+...   |++++|.+.++++.+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            99988765 3457788888899999999999999999988764 34677888888888888   9999999999998876


Q ss_pred             CCC
Q 043144          496 GVR  498 (580)
Q Consensus       496 ~~~  498 (580)
                      ++.
T Consensus       158 ~p~  160 (568)
T 2vsy_A          158 GVG  160 (568)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.97  E-value=1.2e-08  Score=95.74  Aligned_cols=161  Identities=9%  Similarity=-0.004  Sum_probs=88.4

Q ss_pred             cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 043144           97 NGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQV  176 (580)
Q Consensus        97 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  176 (580)
                      .|++++|.++++++.+... ...         +...|+++.|...|...               +..|...|++++|...
T Consensus         4 ~~~~~eA~~~~~~a~k~~~-~~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK-TSF---------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CCS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc-ccc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            4677888888887765411 110         11146777777777654               4456677777777777


Q ss_pred             HHHc-------CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC---C--ChhhHHHHHHHHHhcCCHhHHHHH
Q 043144          177 LERM-------SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY---P--DVITYTILIEATCKESGVGQAMKL  243 (580)
Q Consensus       177 ~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~  243 (580)
                      |.++       +.++. ..+|+.++.+|.+.|++++|+..|++.+.....   +  ...++..+...|.. |++++|+..
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            7765       11001 235666667777777777777777666542100   0  12344455555555 666666666


Q ss_pred             HHHHHHcCCCC-----CHhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          244 LDEMRNKGCIP-----DVVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       244 ~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      |++..+.....     ...+++.+...|...|++++|+..|++..
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  182 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK  182 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            65554321000     02344555555555555555555555544

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.92  E-value=1.6e-08  Score=94.87  Aligned_cols=225  Identities=13%  Similarity=0.040  Sum_probs=160.8

Q ss_pred             hcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHh-cCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHH
Q 043144          303 STGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCR-KGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAI  381 (580)
Q Consensus       303 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  381 (580)
                      ..|++++|.+++++..+.. + .         .+.. .++++.|...|.++               ...|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~-~-~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL-K-T---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-C-C---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc-c-c---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            3567788888888777642 1 1         0222 57777777777654               45678889999999


Q ss_pred             HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCCC--HHHHHHHHHHHHhCCCHHHHH
Q 043144          382 EYLEIMVSR----GCYPD-IVTYNTLLTALCKDGKVDVAVEILNQLSNKH---CSPV--LITYNTVIDGLSKVGKTEQAM  451 (580)
Q Consensus       382 ~~~~~~~~~----~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~~~--~~~~~~l~~~~~~~g~~~~A~  451 (580)
                      ..|.+..+.    +..+. ..++..+..+|...|++++|...|++..+..   -.+.  ..++..+...|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            999987653    11111 3478889999999999999999999876532   1121  3567888888888 9999999


Q ss_pred             HHHHHHHHCCC---CC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 043144          452 KLLEEMRTKGL---KP--DTITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRPN-VITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       452 ~~~~~m~~~~~---~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      ..|++.++...   .+  ...++..+...+...|++++|+..|+++.+.    +..+. ...+..++.++...|++++|.
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999875411   11  1457888999999999999999999998753    21111 236677778888889999999


Q ss_pred             HHHHHHHHcCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 043144          522 DILADMVTRSCKPT------EATYTILIEGIAYEGLAKEALDL  558 (580)
Q Consensus       522 ~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~  558 (580)
                      ..+++.+ .  .|+      ......++.++ ..|+.+.+.++
T Consensus       216 ~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999998 4  232      12345556655 67888777663

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.92  E-value=8.8e-08  Score=84.31  Aligned_cols=128  Identities=13%  Similarity=-0.033  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLS  477 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~  477 (580)
                      .+..+...+...|++++|...|++..    .|+...|..+...|...|++++|...|++..... +.+...+..+..++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            45556667777888888888877663    3566777777778888888888888888777653 345667777777888


Q ss_pred             hCCCHHHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          478 REGKVDEAIKLFHDLERLGVRPN---------------VITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       478 ~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ..|++++|...|+++.+..+...               ...+..++.+|...|++++|.+.++++++.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            88888888888888776543311               256677777777888888888888777754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.90  E-value=5.5e-07  Score=83.83  Aligned_cols=217  Identities=10%  Similarity=0.014  Sum_probs=114.6

Q ss_pred             HHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-ChHHHHHHH
Q 043144          343 GRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-KMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD-G-KVDVAVEIL  419 (580)
Q Consensus       343 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g-~~~~A~~~~  419 (580)
                      ++|++++++++..++. +..+|+.-...+...| .+++++.+++.++...++ +..+|+.-..++.+. + ++++++.++
T Consensus        71 e~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            4455555555554332 3444444444444444 355555555555554332 334444444444443 4 555555555


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC-------HHH
Q 043144          420 NQLSNKHCSPVLITYNTVIDGLSKVGKTE--------QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK-------VDE  484 (580)
Q Consensus       420 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-------~~~  484 (580)
                      +.+.+.+ +.+...|+.-...+.+.|.++        ++++.++++++.. +-|...|+.....+.+.+.       +++
T Consensus       149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHH
Confidence            5555544 334444544444443333333        6666666666654 2355666666666655554       566


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHcC-----CCCCHHHH
Q 043144          485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQT--------------------YRAIDILADMVTRS-----CKPTEATY  539 (580)
Q Consensus       485 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~  539 (580)
                      +++.+++++...+. |...|+.+-..+.+.|+.                    ....++..++....     -.++...+
T Consensus       227 ELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  305 (349)
T 3q7a_A          227 ELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL  305 (349)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence            77777776665544 666666665555555543                    22222222222211     13556677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          540 TILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       540 ~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                      ..|+++|...|+.++|.++++.+.+
T Consensus       306 ~~l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          306 EYLADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHh
Confidence            7778888877888888888888763

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.89  E-value=6.2e-07  Score=83.29  Aligned_cols=164  Identities=13%  Similarity=0.069  Sum_probs=112.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 043144          401 TLLTALCKDGKVDVAVEILNQLSNKHC-SPVL----ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PD----TITYS  470 (580)
Q Consensus       401 ~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~  470 (580)
                      ..+..+...|++++|..++++..+... .|+.    ..+..+...+...|++++|+..|++..+.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            345667778888888888888776431 1221    12334566666777888888888888764222 22    23578


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHh----C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHH
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLER----L-GVRP-NVITYNSIMLGLCKARQTYRAIDILADMVTR----SCKPT-EATY  539 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~  539 (580)
                      .+...|...|++++|..+|+++.+    . +..+ ...++..++.+|...|++++|++.++++++.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            888888888888888888888763    1 1111 1346778888888899999998888887643    21222 5678


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHh
Q 043144          540 TILIEGIAYEGL-AKEALDLLNQLCS  564 (580)
Q Consensus       540 ~~l~~~~~~~g~-~~~A~~~~~~~~~  564 (580)
                      ..++.+|...|+ +++|.+.++++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            888888888884 5888888887754

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.89  E-value=7.3e-08  Score=84.84  Aligned_cols=126  Identities=10%  Similarity=0.018  Sum_probs=105.7

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|+..|++++    .|+...+..++..+.+.|++++|...|++..... +.+...+..++.+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            45667788889999999999998874    4577889999999999999999999999998876 667888999999999


Q ss_pred             hcCChhHHHHHHHHc--CCCCCc----------------chHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          166 RLGEIDNALQVLERM--SVAPDV----------------VTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~--~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      ..|++++|++.|+++  ..+.+.                ..+..++.++.+.|++++|.+.|+++++..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999999987  223333                678888888999999999999999888765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.87  E-value=8.1e-08  Score=76.31  Aligned_cols=98  Identities=12%  Similarity=0.039  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      .+......+.+.|++++|+..|+++.+..+. +...|..++.+|...|++++|+..+++.++.. +.+...|..++.++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            3444455555555555555555555544332 44555555555555555555555555555442 344555555555555


Q ss_pred             hcCCHHHHHHHHHHHHhCCC
Q 043144          548 YEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       548 ~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ..|++++|.+.++++++..+
T Consensus        93 ~~~~~~~A~~~~~~al~l~P  112 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDP  112 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT
T ss_pred             HCCCHHHHHHHHHHHHHHCc
Confidence            55555555555555555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.85  E-value=3e-08  Score=81.33  Aligned_cols=97  Identities=14%  Similarity=-0.008  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      .+..+...+.+.|++++|...|+++....+. +...|..+..+|...|++++|+..|+++++.. |.++..|..++.+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            3444444555555555555555555544332 44455555555555555555555555555442 334445555555555


Q ss_pred             hcCCHHHHHHHHHHHHhCC
Q 043144          548 YEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       548 ~~g~~~~A~~~~~~~~~~g  566 (580)
                      ..|++++|.+.|+++++..
T Consensus       116 ~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHHC
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            5555555555555555443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.85  E-value=2e-06  Score=80.01  Aligned_cols=231  Identities=7%  Similarity=-0.012  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc-C-CHHHHHHHHH
Q 043144          309 DAERLLAEMVLKGCSPSVVTFNILINFLCRKG-LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE-K-KMDRAIEYLE  385 (580)
Q Consensus       309 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~~~~~  385 (580)
                      +|+++++.++..+ +.+..+|+.-...+...| .+++++..++.++...++ +..+|+.-...+... + ++++++.+++
T Consensus        72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~  149 (349)
T 3q7a_A           72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIH  149 (349)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            3444444444432 223333443333333334 244444444444443322 334444433333333 3 4444444444


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCChH--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-------HHHH
Q 043144          386 IMVSRGCYPDIVTYNTLLTALCKDGKVD--------VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK-------TEQA  450 (580)
Q Consensus       386 ~~~~~~~~~~~~~~~~li~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A  450 (580)
                      ++++...+ +..+|+.-.-++.+.|.++        ++++.++++.+.+ +.|...|+.....+.+.++       ++++
T Consensus       150 k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE  227 (349)
T 3q7a_A          150 GSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE  227 (349)
T ss_dssp             HHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred             HHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence            44443222 3334433333333333333        5555555555443 2344455555555444443       4566


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH--------------------HHHHHHHHHHHhCC-----CCCCHHHHH
Q 043144          451 MKLLEEMRTKGLKPDTITYSSLVGGLSREGKV--------------------DEAIKLFHDLERLG-----VRPNVITYN  505 (580)
Q Consensus       451 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~~~~~  505 (580)
                      ++.+++++... +-|...|+.+-..+.+.|+.                    ........++....     ..++...+.
T Consensus       228 Le~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~  306 (349)
T 3q7a_A          228 LIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALE  306 (349)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHH
Confidence            66666666543 33555565555555544432                    22222222222211     124677788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       506 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      .|+..|...|+.++|.++++.+.+.--+....-|...++
T Consensus       307 ~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          307 YLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            888888888888888888888876533444455554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.84  E-value=1.6e-07  Score=78.66  Aligned_cols=129  Identities=12%  Similarity=-0.011  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144          432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL  511 (580)
Q Consensus       432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  511 (580)
                      ..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...++++.+..+. +...|..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            345666677777888888888888777653 335677777788888888888888888888765433 677778888888


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 043144          512 CKARQTYRAIDILADMVTRSCKPTEATYTIL--IEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      ...|++++|...++++.+.. +.+...+..+  +..+...|++++|.+.+++..
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            88888888888888887763 4455555433  334677788888888877664

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.83  E-value=1.4e-07  Score=74.87  Aligned_cols=110  Identities=16%  Similarity=0.110  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144          432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGL  511 (580)
Q Consensus       432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  511 (580)
                      ..+......|.+.|++++|++.|++.++.. +.+...|..+..++...|++++|+..++++++.++. +...|..++.+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            345556666777777777777777776653 335667777777777777777777777777765543 566777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          512 CKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       512 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      ...|++++|++.|++.++.. |.+...+..+..
T Consensus        92 ~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~  123 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVD-PSNEEAREGVRN  123 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence            77777777777777777653 445555555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.80  E-value=1.2e-06  Score=81.29  Aligned_cols=166  Identities=12%  Similarity=0.033  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC---CCC--HH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV-----LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL---KPD--TI  467 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~  467 (580)
                      .+...+..+...|++++|.+.+....+......     ...+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344455566677777777777766655432111     11233345556677788888888877765321   111  34


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHH---hCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLE---RLGVR-P--NVITYNSIMLGLCKARQTYRAIDILADMVTRS----CKP-TE  536 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~  536 (580)
                      +++.+...|...|++++|...++++.   +.... +  ...++..++.+|...|++++|+..+++.++..    ... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            67777778888888888888888775   21111 1  12467777888888888888888888776431    111 15


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 043144          537 ATYTILIEGIAYEGLAKEA-LDLLNQLC  563 (580)
Q Consensus       537 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~  563 (580)
                      .++..++.+|...|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            6777788888888888888 66676654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.80  E-value=3.2e-08  Score=81.28  Aligned_cols=95  Identities=13%  Similarity=-0.021  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      .+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...|+++....+. +...+..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHH
Confidence            34444445555555555555555554432 224444555555555555555555555555444332 3444445555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 043144          513 KARQTYRAIDILADMVT  529 (580)
Q Consensus       513 ~~g~~~~A~~~~~~~~~  529 (580)
                      ..|++++|+..|++.++
T Consensus       101 ~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.79  E-value=4.6e-08  Score=87.93  Aligned_cols=188  Identities=8%  Similarity=-0.058  Sum_probs=105.8

Q ss_pred             HcCChHHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCChHHHHHHHHHHHhC------------CCC-----
Q 043144           96 RNGELEEGFKFLESMVYHGDIPDIIPCTSL-------IRGFCKVGKTRKATRVMEIVEDS------------GAV-----  151 (580)
Q Consensus        96 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~-----  151 (580)
                      +.+++.+|.+.|.++... .|.....|..+       ...+.+.++..++...+..-...            |..     
T Consensus        18 ~~~d~~~A~~~F~~a~~~-dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNY-DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHh-ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            467777777777777765 34455667666       45555555555555555554431            100     


Q ss_pred             ---CCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC--hhhHH
Q 043144          152 ---PDVITYNVLISGYCRLGEIDNALQVLERM-SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD--VITYT  225 (580)
Q Consensus       152 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~  225 (580)
                         .-...+..+...+...|++++|.++|+.+ ...|+......+...+.+.+++++|+..|+...... .|.  ...+.
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~  175 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV  175 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence               00122334556666677777777777766 223332255556666667777777777766544321 111  22455


Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          226 ILIEATCKESGVGQAMKLLDEMRNKGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSY  285 (580)
Q Consensus       226 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  285 (580)
                      .+..++...|++++|+..|++.......|.  ...+..+..++.+.|+.++|..+|+++...
T Consensus       176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          176 AHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            566666666666666666666653321132  234445555666666666666666666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.78  E-value=3.8e-08  Score=90.81  Aligned_cols=192  Identities=7%  Similarity=-0.019  Sum_probs=96.3

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCC-CCcchHHHHHHH
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVA-PDVVTYNTILRT  195 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~  195 (580)
                      +...+..++..+.+.|++++|...|++..... +.+...|..++.+|.+.|++++|+..++++ ... .+...+..++.+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34455556666666666666666666666654 445666666666666667777776666665 222 334566666666


Q ss_pred             HHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHH
Q 043144          196 LCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEA  275 (580)
Q Consensus       196 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  275 (580)
                      +...|++++|...|+++++.+.. +...+...+....+   ..++.. +..........+......+...  ..|+.++|
T Consensus        82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A  154 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERE  154 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHH
Confidence            66777777777666666553210 10011111111111   111111 1112222223333333333222  25677777


Q ss_pred             HHHHHHhhhCCCCCCH-HHHHHHHHHHHhc-CChHHHHHHHHHHHH
Q 043144          276 IKFLNDMPSYGCQPNV-ITHNIILRSMCST-GRWMDAERLLAEMVL  319 (580)
Q Consensus       276 ~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~-~~~~~a~~~~~~~~~  319 (580)
                      ++.+++..+.  .|+. .....+...+... +.+++|.++|..+.+
T Consensus       155 ~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          155 LEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            7777766654  2333 2222232223333 456666666666544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.77  E-value=1.5e-07  Score=84.57  Aligned_cols=49  Identities=4%  Similarity=-0.135  Sum_probs=34.7

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHH-------HHHHHhcCChhHHHHHHHHc
Q 043144          131 KVGKTRKATRVMEIVEDSGAVPDVITYNVL-------ISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       131 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~  180 (580)
                      ..++...|.+.|.++.... |.....|+.+       ...+.+.++..+++..+.+.
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~   73 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGS   73 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHT
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            5788888888888888876 6677788777       45555555556666555554

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.77  E-value=1.4e-06  Score=80.91  Aligned_cols=163  Identities=12%  Similarity=0.052  Sum_probs=117.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----HHHHHH
Q 043144          367 VLHGFCKEKKMDRAIEYLEIMVSRGC-YPDIV----TYNTLLTALCKDGKVDVAVEILNQLSNKHCS-PV----LITYNT  436 (580)
Q Consensus       367 l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~----~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~  436 (580)
                      .+..+...|++++|...+++..+... .|+..    .+..+...+...|++++|...++++...... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            35667778888888888888776422 12211    2334666677777888998888888764322 22    235888


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCCC-HHHHH
Q 043144          437 VIDGLSKVGKTEQAMKLLEEMRTK-----GLKPD-TITYSSLVGGLSREGKVDEAIKLFHDLERL----GVRPN-VITYN  505 (580)
Q Consensus       437 l~~~~~~~g~~~~A~~~~~~m~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~  505 (580)
                      +...|...|++++|...|+++.+.     +..+. ..++..+...|.+.|++++|...++++.+.    +..+. ..+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888899999999999999888741     11122 336788889999999999999999987642    22222 66888


Q ss_pred             HHHHHHHhcCC-HHHHHHHHHHHHH
Q 043144          506 SIMLGLCKARQ-TYRAIDILADMVT  529 (580)
Q Consensus       506 ~l~~~~~~~g~-~~~A~~~~~~~~~  529 (580)
                      .++.+|...|+ +++|.+.+++++.
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999994 6999999998864

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.76  E-value=4.6e-07  Score=71.51  Aligned_cols=116  Identities=13%  Similarity=0.142  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      ...+..+...+...|++++|.+.++++.... +.+..++..+...+...|++++|..+++++.+..+. +...+..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            3455556666666666666666666665542 234556666666666667777777766666654332 55566666666


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043144          511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE  549 (580)
Q Consensus       511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  549 (580)
                      |...|++++|...++++.+.. +.+...+..+..++...
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  124 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQKQ  124 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhc
Confidence            667777777777777666553 44555555555555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.76  E-value=1.3e-07  Score=79.21  Aligned_cols=125  Identities=12%  Similarity=0.062  Sum_probs=79.6

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|+..|++++.. .+.+..++..++.++...|++++|...+++..... +.+...+..++.++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            4566677777777777777777777765 34456667777777777777777777777776654 455666777777777


Q ss_pred             hcCChhHHHHHHHHc-CC-CCCcchHHH--HHHHHHhcCChhHHHHHHHHH
Q 043144          166 RLGEIDNALQVLERM-SV-APDVVTYNT--ILRTLCDSGKLNLAMEVLHKQ  212 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-~~-~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~  212 (580)
                      ..|++++|...|+++ .. +.+...+..  ++..+...|++++|++.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            777777777777665 21 223333322  223355556666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.76  E-value=1.1e-07  Score=80.90  Aligned_cols=120  Identities=5%  Similarity=0.013  Sum_probs=59.8

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhCCCH--HH
Q 043144          408 KDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG-LSREGKV--DE  484 (580)
Q Consensus       408 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~--~~  484 (580)
                      ..|++++|...++...+.. +.+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence            3455555555555554433 2334555555555555555555555555555432 2234444455555 4455555  55


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          485 AIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       485 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      |...++++.+..+. +...+..++.+|...|++++|...++++++.
T Consensus       100 A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            55555555544322 3445555555555555555555555555544

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.75  E-value=3.2e-07  Score=73.12  Aligned_cols=119  Identities=13%  Similarity=0.049  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...++++.+..+. +...+..++.+
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHH
Confidence            4456666777777777888887777776653 335667777777778888888888888887765433 56677777778


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043144          511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLA  552 (580)
Q Consensus       511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  552 (580)
                      |...|++++|...+++..+.. +.+...+..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            888888888888888877663 55677777777777777664

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.75  E-value=9.5e-08  Score=78.34  Aligned_cols=98  Identities=11%  Similarity=-0.055  Sum_probs=77.5

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHH
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRT  195 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~  195 (580)
                      +...+..+...+.+.|++++|...|+++.... |.++..|..++.+|...|++++|+..|+++  -.|.+...|..++.+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            45567777888888888888888888888776 667888888888888888888888888887  224456778888888


Q ss_pred             HHhcCChhHHHHHHHHHHhCC
Q 043144          196 LCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       196 ~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      |.+.|++++|+..|+++++..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHcCCHHHHHHHHHHHHHhC
Confidence            888888888888888887754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.74  E-value=2.7e-07  Score=73.90  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=79.8

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIML  509 (580)
Q Consensus       430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  509 (580)
                      +...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+..+. +...+..++.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHHH
Confidence            34556666777777777777777777776653 335666777777777777777777777777665433 5667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 043144          510 GLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEG  550 (580)
Q Consensus       510 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  550 (580)
                      +|...|++++|...+++..+.. +.+...+..+..++...|
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            7777777777777777777652 344556666666666554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.74  E-value=1.3e-07  Score=82.46  Aligned_cols=96  Identities=11%  Similarity=-0.062  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----H
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERL----GVRP--NVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPT----E  536 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~  536 (580)
                      ++..+...+...|++++|...+++..+.    +..|  ....+..+...+...|++++|...+++..+..- ..+    .
T Consensus        68 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  147 (203)
T 3gw4_A           68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIA  147 (203)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHH
Confidence            3444444555555555555555544321    1011  122344455555555555555555555442100 011    1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          537 ATYTILIEGIAYEGLAKEALDLLNQLC  563 (580)
Q Consensus       537 ~~~~~l~~~~~~~g~~~~A~~~~~~~~  563 (580)
                      .++..++.++...|++++|.+.+++..
T Consensus       148 ~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          148 CAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            223445555555555555555555544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=5.1e-08  Score=89.90  Aligned_cols=190  Identities=10%  Similarity=-0.001  Sum_probs=133.2

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+...|++++|+..|++++.. .+.+...+..+..+|.+.|++++|...+++..+.. +.+...+..++.+|
T Consensus         5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (281)
T 2c2l_A            5 QELKEQGNRLFVGRKYPEAAACYGRAITR-NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ   82 (281)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            35777889999999999999999999987 45578899999999999999999999999999876 67788999999999


Q ss_pred             HhcCChhHHHHHHHHc-CCCCC-cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144          165 CRLGEIDNALQVLERM-SVAPD-VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      ...|++++|+..|+++ ...|+ ...+...+....+.   .++.. +........+.+......+...  ..|++++|.+
T Consensus        83 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~~  156 (281)
T 2c2l_A           83 LEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAERERELE  156 (281)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHHT
T ss_pred             HHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHHH
Confidence            9999999999999987 21121 11111122211111   11111 2222233344455444444332  3688999999


Q ss_pred             HHHHHHHcCCCCC-HhHHHHHHHHHHhc-CCHHHHHHHHHHhhh
Q 043144          243 LLDEMRNKGCIPD-VVTYNVLVNGICKE-GRLDEAIKFLNDMPS  284 (580)
Q Consensus       243 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~  284 (580)
                      .++...+.  .|+ ......+...+.+. +.+++|.++|.++.+
T Consensus       157 ~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          157 ECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             TTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            99888765  333 34444455555554 678899999998765

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.73  E-value=5.5e-07  Score=83.69  Aligned_cols=164  Identities=9%  Similarity=0.014  Sum_probs=91.7

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhcCChhHHHHHHHHc-CC---CCC----c
Q 043144          120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD-----VITYNVLISGYCRLGEIDNALQVLERM-SV---APD----V  186 (580)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~~~----~  186 (580)
                      ..+...+..+...|++++|.+.+....+......     ...+..++..+...|++++|+..+++. ..   ..+    .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3444455556666666666666665555431111     012333555556666666666666654 11   111    2


Q ss_pred             chHHHHHHHHHhcCChhHHHHHHHHHHh---CCCC-C--ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcC----CCC-C
Q 043144          187 VTYNTILRTLCDSGKLNLAMEVLHKQLE---KECY-P--DVITYTILIEATCKESGVGQAMKLLDEMRNKG----CIP-D  255 (580)
Q Consensus       187 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~----~~~-~  255 (580)
                      .+++.++..|...|++++|+..|+++++   .... +  ...++..+...|...|++++|...+++..+..    ... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            2566666677777777777777766652   1100 0  11466666777777777777777777665431    111 1


Q ss_pred             HhHHHHHHHHHHhcCCHHHH-HHHHHHhh
Q 043144          256 VVTYNVLVNGICKEGRLDEA-IKFLNDMP  283 (580)
Q Consensus       256 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  283 (580)
                      ..+|..+..+|.+.|++++| ...|++..
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            45667777777777777777 66566544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=9.4e-06  Score=75.22  Aligned_cols=187  Identities=7%  Similarity=0.003  Sum_probs=97.0

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-HHHHHHH
Q 043144          377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDG--KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK-TEQAMKL  453 (580)
Q Consensus       377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~  453 (580)
                      +++++.+++.++...++ +..+|+.-..++.+.|  .+++++.+++.+.+.+ +.+...|+.-...+...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            34555555555554332 4445554444444544  2555555555555544 3345555555555555555 3556666


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----
Q 043144          454 LEEMRTKGLKPDTITYSSLVGGLSRE--------------GKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA-----  514 (580)
Q Consensus       454 ~~~m~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  514 (580)
                      ++++++.. +-|...|+.....+...              +.++++++.+..+....+. |...|+.+-..+...     
T Consensus       168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccc
Confidence            66665543 22444555444443332              3456666666666655544 566665554444443     


Q ss_pred             ------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---HHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          515 ------RQTYRAIDILADMVTRSCKPTEATYTILIE---GIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       515 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                            +.++++++.++++.+.. |.+.-++..++.   .....|..+++..++.++++.++.
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~-pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~  307 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELE-PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM  307 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGG
T ss_pred             cchHHHHHHHHHHHHHHHHHhhC-cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcc
Confidence                  34667777777777652 222222222221   112356667777777777765543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.71  E-value=9.3e-08  Score=81.34  Aligned_cols=121  Identities=7%  Similarity=0.053  Sum_probs=98.4

Q ss_pred             HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCh--
Q 043144           94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISG-YCRLGEI--  170 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  170 (580)
                      +...|++++|+..++.++.. .+.+...|..++..|...|++++|...|++..... +.+...+..++.+ |...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHH-CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcch
Confidence            34578899999999998876 45677889999999999999999999999998876 5678888888888 7788998  


Q ss_pred             hHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          171 DNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       171 ~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      ++|+..|+++  ..+.+...+..++.++...|++++|...|+++++..
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            9999999987  224456788889999999999999999999988865

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.70  E-value=5.9e-08  Score=79.66  Aligned_cols=107  Identities=15%  Similarity=-0.020  Sum_probs=69.7

Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCC
Q 043144          107 LESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAP  184 (580)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~  184 (580)
                      |++++.. .|.+...+..+...+.+.|++++|...|+.+.... |.+...|..++.+|...|++++|+..|+++  -.+.
T Consensus        10 ~~~al~~-~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           10 IAMLNEI-SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHTTC-CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHcC-CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            4444433 23344556666667777777777777777776655 556667777777777777777777777766  2234


Q ss_pred             CcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144          185 DVVTYNTILRTLCDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  215 (580)
                      +...+..++.+|...|++++|...|++.++.
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5566677777777777777777777776654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.70  E-value=4.4e-07  Score=86.01  Aligned_cols=123  Identities=11%  Similarity=-0.027  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV--------------LITYNTVIDGLSKVGKTEQAMKLLEEMRTKG  461 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  461 (580)
                      ...+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..+++.++..
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34666677777777777777777777666542111              2344444444444444444444444444432


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144          462 LKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRA  520 (580)
Q Consensus       462 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  520 (580)
                       +.+...|..+..++...|++++|...|+++.+..+. +...+..+..++...|++++|
T Consensus       227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence             223444444444444444444444444444443322 334444444444444444444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.69  E-value=3.1e-07  Score=73.56  Aligned_cols=114  Identities=10%  Similarity=0.066  Sum_probs=80.4

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+...|++++|+..|++++.. .+.+..++..+...+...|++++|...+++..+.. +.+...+..++.++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKR-NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTT-CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence            46677777888888888888888888765 34466777777777888888888888888777765 45667777777777


Q ss_pred             HhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcC
Q 043144          165 CRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSG  200 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g  200 (580)
                      ...|++++|++.|++. .. +.+...+..+..++.+.|
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred             HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence            7778888887777776 22 233455555555555443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.69  E-value=3e-07  Score=72.55  Aligned_cols=93  Identities=14%  Similarity=0.206  Sum_probs=57.9

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|++.|++++.. .+.+..++..++..+...|++++|..+|+++.... +.+..++..++..|.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~   88 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH-CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHH
Confidence            4555666666666777776666666654 23445566666666666666666666666666544 445556666666666


Q ss_pred             hcCChhHHHHHHHHc
Q 043144          166 RLGEIDNALQVLERM  180 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~  180 (580)
                      ..|++++|...|+++
T Consensus        89 ~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           89 KQGDYDEAIEYYQKA  103 (125)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHH
Confidence            666666666666655

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.68  E-value=3.1e-07  Score=73.23  Aligned_cols=114  Identities=8%  Similarity=0.016  Sum_probs=72.2

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|+..|++++.. .+.+...+..++..+...|++++|...++...... +.+...+..++.++.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   91 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIEL-NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS   91 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence            4556666777777777777777777665 33455666666777777777777777777766654 445666666666666


Q ss_pred             hcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCC
Q 043144          166 RLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGK  201 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~  201 (580)
                      ..|++++|...|++. . .+.+...+..+..++.+.|+
T Consensus        92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            677777777766665 2 22344555555555555554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.67  E-value=1.3e-07  Score=82.34  Aligned_cols=60  Identities=12%  Similarity=-0.048  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhcCCHhHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          224 YTILIEATCKESGVGQAMKLLDEMRNKGC-IPD----VVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       224 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      +..+...+...|++++|...+++..+... ..+    ..++..+...+...|++++|...+++..
T Consensus       110 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          110 AYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence            44444455555555555555554432100 001    1224455556666666666666655543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.66  E-value=4e-07  Score=72.32  Aligned_cols=95  Identities=17%  Similarity=0.059  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      .|......+...|++++|...|++.++.. +.+...|..+..++...|++++|+..++++.+..+. +...|..++.++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHH
Confidence            34444455555555555555555555432 223445555555555555555555555555544322 3445555555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 043144          513 KARQTYRAIDILADMVT  529 (580)
Q Consensus       513 ~~g~~~~A~~~~~~~~~  529 (580)
                      ..|++++|+..++++++
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            55555555555555543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.65  E-value=3.6e-05  Score=71.34  Aligned_cols=250  Identities=10%  Similarity=0.021  Sum_probs=122.1

Q ss_pred             hcCCHH-HHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHcCCCCChhhHHHHHHHH
Q 043144          268 KEGRLD-EAIKFLNDMPSYGCQPNVITHNIILRSMCSTGR----------WMDAERLLAEMVLKGCSPSVVTFNILINFL  336 (580)
Q Consensus       268 ~~g~~~-~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  336 (580)
                      +.|.++ +|+.+++.+...+ +-+...|+.--..+...+.          +++++.+++.++... +-+..+|+.-..++
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL  118 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLL  118 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            455544 6777777777654 3344555544444333222          345555555555442 33444555444444


Q ss_pred             HhcC--CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 043144          337 CRKG--LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKK-MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVD  413 (580)
Q Consensus       337 ~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  413 (580)
                      ...+  .+++++..++++.+..+. |..+|+.-...+...|. ++++++.+.++++..+. |...|+....++.+.+...
T Consensus       119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred             hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence            4444  245555555555554332 44445544444444454 35555555555544332 4444444444333321100


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC-----------CCH
Q 043144          414 VAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE-----------GKV  482 (580)
Q Consensus       414 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----------g~~  482 (580)
                      .+-       ..+ .             ...+.++++++.+.+.+... +-|...|+.+-..+.+.           +.+
T Consensus       197 ~~~-------~~~-~-------------~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l  254 (331)
T 3dss_A          197 DSG-------PQG-R-------------LPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVL  254 (331)
T ss_dssp             --------------C-------------CCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHH
T ss_pred             ccc-------ccc-c-------------cchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHH
Confidence            000       000 0             00033566667776666543 33555666554444444           346


Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLG---LCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      +++++.++++.+..+. +.-.+..++..   ....|..+++...+.++.+.. |....-|.-+...
T Consensus       255 ~~el~~~~elle~~pd-~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D-p~r~~~y~d~~~~  318 (331)
T 3dss_A          255 QSELESCKELQELEPE-NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLDDLRSK  318 (331)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC-GGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhCcc-cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC-cchhhHHHHHHHH
Confidence            7788888888765443 33333332221   113566777888888887652 3334445544443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.64  E-value=4.1e-07  Score=74.02  Aligned_cols=96  Identities=9%  Similarity=-0.049  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      .+..+...+...|++++|...|++.+... +.+...|..+..++...|++++|...|+++....+. +...+..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence            34444555555666666666666555442 224455555555556666666666666665554433 4445555555556


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 043144          513 KARQTYRAIDILADMVTR  530 (580)
Q Consensus       513 ~~g~~~~A~~~~~~~~~~  530 (580)
                      ..|++++|+..++++++.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666555543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.63  E-value=1.2e-06  Score=68.23  Aligned_cols=98  Identities=12%  Similarity=0.100  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      .+..+...+...|++++|...++++....+. +...+..++.++...|++++|...+++..+.. +.+...+..++.++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3444455555555555555555555443322 44455555555555555555555555555442 334555555555555


Q ss_pred             hcCCHHHHHHHHHHHHhCCC
Q 043144          548 YEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       548 ~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ..|++++|.+.+++..+.++
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT
T ss_pred             HHhhHHHHHHHHHHHHHcCC
Confidence            55555555555555555443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.62  E-value=6.1e-07  Score=75.10  Aligned_cols=100  Identities=10%  Similarity=0.036  Sum_probs=83.5

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      .+...+..+...+...|++++|+..|++.++.. +.+...|..+..++...|++++|+..|+++.+..+. +...|..+.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg   86 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLG   86 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            345677788888889999999999999988764 346778888888999999999999999998876644 678888889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 043144          509 LGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .+|...|++++|+..|++.++.
T Consensus        87 ~~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           87 LARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999988875

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.61  E-value=4.2e-07  Score=70.16  Aligned_cols=102  Identities=14%  Similarity=0.035  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 043144          466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKP--TEATYTILI  543 (580)
Q Consensus       466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~  543 (580)
                      ...+..+...+...|++++|...++++.+..+. +...+..++.++...|++++|...++++++.. +.  +...+..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            445566677777788888888888877765433 56677778888888888888888888887663 44  577788888


Q ss_pred             HHHHhc-CCHHHHHHHHHHHHhCCCCC
Q 043144          544 EGIAYE-GLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       544 ~~~~~~-g~~~~A~~~~~~~~~~g~~~  569 (580)
                      .++... |++++|.+.++++.+..+..
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            888888 88888888888887766543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.58  E-value=1.3e-06  Score=69.21  Aligned_cols=99  Identities=11%  Similarity=0.023  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      ...+..+...+...|++++|...|+++.+..+. +...|..++.+|...|++++|+..++++++.. +.+...|..++.+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence            345566666777777777777777777665443 56677777777777777777777777777653 5556677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHhCC
Q 043144          546 IAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       546 ~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +...|++++|.+.++++.+..
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhC
Confidence            777777777777777777655

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.58  E-value=1.1e-06  Score=83.21  Aligned_cols=131  Identities=16%  Similarity=0.027  Sum_probs=78.9

Q ss_pred             CHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144          360 NSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD--------------IVTYNTLLTALCKDGKVDVAVEILNQLSNK  425 (580)
Q Consensus       360 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  425 (580)
                      +...+..+...+.+.|++++|+..|++.++......              ...+..+..+|.+.|++++|+..++++.+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344556666666666666666666666665432211              356666666666666666666666666655


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHH-HHHHHHH
Q 043144          426 HCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEA-IKLFHDL  492 (580)
Q Consensus       426 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A-~~~~~~~  492 (580)
                      . +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++...|+.++| ...++.|
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 3345566666666666666666666666666543 23455566666666666666665 3344444

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.57  E-value=2.4e-06  Score=66.40  Aligned_cols=112  Identities=12%  Similarity=0.012  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+..+. +...+..++.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            3455666667777777777777777776653 335666777777777778888888888777765433 56677777777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          511 LCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       511 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      +...|++++|.+.+++..+.. +.+...+..+..+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  115 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM  115 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            888888888888888777653 4455555555443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.57  E-value=6.7e-07  Score=70.32  Aligned_cols=96  Identities=16%  Similarity=-0.014  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAY  548 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  548 (580)
                      +..+...+.+.|++++|...|+++.+..+. +...|..+..++...|++++|+..++++++.. +.+...+..++.++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            344555666777777777777777665443 66677777777777777777777777777653 4556677777777777


Q ss_pred             cCCHHHHHHHHHHHHhCC
Q 043144          549 EGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       549 ~g~~~~A~~~~~~~~~~g  566 (580)
                      .|++++|...++++++..
T Consensus        98 ~g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHHC--
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            777777777777776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.56  E-value=1.6e-06  Score=75.15  Aligned_cols=132  Identities=9%  Similarity=-0.038  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-C--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 043144          434 YNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-P--------------DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR  498 (580)
Q Consensus       434 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  498 (580)
                      +..+...+...|++++|...|++.+..... |              ....+..+..++...|++++|+..++++.+..+.
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~  120 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN  120 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc
Confidence            444444555555555555555555543211 0              1256777888888889999999998888876543


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHhCCC
Q 043144          499 PNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEAL-DLLNQLCSRGV  567 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~g~  567 (580)
                       +...+..++.+|...|++++|+..+++.++.. +.+...+..+..++...|+.+++. ..+..+...|.
T Consensus       121 -~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          121 -NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             -cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence             67788888888889999999999998888763 566778888888888888777776 56666665544

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.56  E-value=2e-06  Score=69.27  Aligned_cols=100  Identities=12%  Similarity=-0.045  Sum_probs=63.5

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      .+...|..+...+...|++++|...|++.+... +.+...+..+..++...|++++|...++++.+..+. +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch-hHHHHHHHH
Confidence            345566666666666777777777776666543 234556666666666667777777766666655433 556666666


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 043144          509 LGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .+|...|++++|+..++++++.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            6666667777776666666543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.55  E-value=2.9e-07  Score=74.99  Aligned_cols=95  Identities=15%  Similarity=-0.060  Sum_probs=54.2

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHH
Q 043144          120 IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLC  197 (580)
Q Consensus       120 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~  197 (580)
                      ..+..+...+.+.|++++|...|+.+.... |.+...|..++.+|...|++++|+..|+++  -.+.+...+..++.++.
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence            344455555566666666666666655544 445555566666666666666666666655  12334455555666666


Q ss_pred             hcCChhHHHHHHHHHHhC
Q 043144          198 DSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       198 ~~g~~~~A~~~~~~~~~~  215 (580)
                      ..|++++|...|+++++.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666655543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.54  E-value=6.2e-07  Score=71.24  Aligned_cols=92  Identities=16%  Similarity=0.163  Sum_probs=44.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCCC--------cchHHHH
Q 043144          122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAPD--------VVTYNTI  192 (580)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--------~~~~~~l  192 (580)
                      +..++..+.+.|++++|+..|++.++.. |.+...|..++.+|...|++++|++.|++. .+.|+        ..+|..+
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l   89 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA   89 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence            3444445555555555555555554443 334445555555555555555555555444 11110        1134444


Q ss_pred             HHHHHhcCChhHHHHHHHHHHh
Q 043144          193 LRTLCDSGKLNLAMEVLHKQLE  214 (580)
Q Consensus       193 ~~~~~~~g~~~~A~~~~~~~~~  214 (580)
                      +.++...|++++|++.|++.+.
T Consensus        90 g~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           90 GNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh
Confidence            5555555555555555555544

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.53  E-value=2e-06  Score=68.22  Aligned_cols=93  Identities=11%  Similarity=0.071  Sum_probs=37.7

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CC----HHHHHHHHH
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PN----VITYNSIML  509 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~~l~~  509 (580)
                      .+...+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++..+.  ++    ..+|..+..
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~   91 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN   91 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence            33444444444444444444444332 123334444444444444444444444444322110  00    123334444


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 043144          510 GLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       510 ~~~~~g~~~~A~~~~~~~~~  529 (580)
                      ++...|++++|++.|++.+.
T Consensus        92 ~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           92 AFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHh
Confidence            44444444444444444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.51  E-value=9.8e-07  Score=68.01  Aligned_cols=93  Identities=9%  Similarity=-0.061  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCC--CcchHHHHHHHH
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAP--DVVTYNTILRTL  196 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~--~~~~~~~l~~~~  196 (580)
                      .+..++..+...|++++|...|++..+.. +.+...+..++.++...|++++|+..|++.  ..+.  +...+..++.++
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            34444444444444444444444444433 233344444444444444444444444443  1112  233444444444


Q ss_pred             Hhc-CChhHHHHHHHHHHh
Q 043144          197 CDS-GKLNLAMEVLHKQLE  214 (580)
Q Consensus       197 ~~~-g~~~~A~~~~~~~~~  214 (580)
                      .+. |++++|.+.++....
T Consensus        87 ~~~~~~~~~A~~~~~~~~~  105 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKL  105 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGG
T ss_pred             HHHhCCHHHHHHHHHHHhh
Confidence            444 444444444444443

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.51  E-value=7.4e-07  Score=70.09  Aligned_cols=93  Identities=13%  Similarity=0.003  Sum_probs=79.2

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+.+.|++++|+..|++++.. .|.+...|..+..++...|++++|+..|++..+.. |.+...+..++.+|.
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT   96 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4667778888999999999999999886 45677888888899999999999999999988876 567778888888998


Q ss_pred             hcCChhHHHHHHHHc
Q 043144          166 RLGEIDNALQVLERM  180 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~  180 (580)
                      ..|++++|+..|+++
T Consensus        97 ~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           97 NEHNANAALASLRAW  111 (121)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            999999999988887

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.49  E-value=1.6e-06  Score=72.54  Aligned_cols=94  Identities=10%  Similarity=0.044  Sum_probs=81.4

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGY  164 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  164 (580)
                      ..+..+...+.+.|++++|+..|++++.. .+.+...|..+..+|.+.|++++|+..|++.+... +.+...|..++.+|
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSI-APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            36777888899999999999999999886 45577888889999999999999999999998876 66788888899999


Q ss_pred             HhcCChhHHHHHHHHc
Q 043144          165 CRLGEIDNALQVLERM  180 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~  180 (580)
                      ...|++++|+..|++.
T Consensus        90 ~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKG  105 (164)
T ss_dssp             HHTTCHHHHHHHHHHH
T ss_pred             HHccCHHHHHHHHHHH
Confidence            9999999999999887

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.49  E-value=1e-06  Score=76.44  Aligned_cols=119  Identities=12%  Similarity=-0.013  Sum_probs=83.2

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI----------------IPCTSLIRGFCKVGKTRKATRVMEIVEDSG  149 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  149 (580)
                      .+..+...+...|++++|+..|++++.... .+.                .++..+..+|.+.|++++|...++......
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHh-cccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            567778889999999999999999987632 222                566677777777777777777777777665


Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHH
Q 043144          150 AVPDVITYNVLISGYCRLGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAM  206 (580)
Q Consensus       150 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~  206 (580)
                       +.+...+..++.+|...|++++|+..|++. .. +.+..++..+..++...++.+++.
T Consensus       119 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          119 -KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             -cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence             556667777777777777777777777776 22 334555666666666655555554

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.49  E-value=6.1e-06  Score=67.27  Aligned_cols=112  Identities=12%  Similarity=-0.058  Sum_probs=73.3

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 043144          430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPD----TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYN  505 (580)
Q Consensus       430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  505 (580)
                      +...+..+...+...|++++|...|++..+.  .|+    ...+..+...+...|++++|...++++.+..+. +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence            4555666666777777777777777777654  344    456666677777777777777777777655433 566666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       506 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      .+..+|...|++++|...+++.++.. +.+...+..+...
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  142 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRNI  142 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHH
Confidence            77777777777777777777777652 4445555544443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.48  E-value=2.6e-06  Score=68.59  Aligned_cols=99  Identities=14%  Similarity=-0.029  Sum_probs=54.4

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      +...+..+...+...|++++|...|+++....+. +...|..++.+|...|++++|...++++++.. +.+...|..++.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHH
Confidence            3445555555555555555555555555544332 45555555555555555555555555555542 344555555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHhC
Q 043144          545 GIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       545 ~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      ++...|++++|...++++.+.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHH
Confidence            555555555555555555543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=5.4e-06  Score=67.60  Aligned_cols=106  Identities=10%  Similarity=-0.019  Sum_probs=92.0

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043144          464 PDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYT  540 (580)
Q Consensus       464 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  540 (580)
                      .+...+..+...+...|++++|...|+++.+..+. +   ...|..+..+|...|++++|+..+++.++.. +.+...+.
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDAT-PQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHccc-chHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            35778888999999999999999999999976432 2   6788899999999999999999999999873 56788999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhCCCCCch
Q 043144          541 ILIEGIAYEGLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       541 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      .++.++...|++++|.+.++++.+..+....
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~  134 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKV  134 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence            9999999999999999999999987755443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.43  E-value=7.4e-07  Score=70.99  Aligned_cols=93  Identities=11%  Similarity=0.172  Sum_probs=53.6

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------HHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD-------VITYN  158 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~  158 (580)
                      .+..+...+...|++++|+..|++++.. .+.+...+..++..+...|++++|...++.+.... +.+       ..++.
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence            3455566666666666666666666654 23445556666666666666666666666655443 111       44555


Q ss_pred             HHHHHHHhcCChhHHHHHHHHc
Q 043144          159 VLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       159 ~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      .++.+|...|++++|.+.|+++
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHH
Confidence            5555555555555555555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.43  E-value=2.6e-06  Score=67.77  Aligned_cols=112  Identities=11%  Similarity=0.093  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CC----HHHHH
Q 043144          432 ITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PN----VITYN  505 (580)
Q Consensus       432 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~----~~~~~  505 (580)
                      ..+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++++.+..+.  ++    ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345555556666666666666666665543 334555666666666666666666666666543221  11    45566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144          506 SIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI  546 (580)
Q Consensus       506 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  546 (580)
                      .++.+|...|++++|.+.++++.+.  .|+...+..+..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~  122 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQQAE  122 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence            6666677777777777777766654  34555555544443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.42  E-value=1e-05  Score=79.81  Aligned_cols=61  Identities=15%  Similarity=0.157  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI----------------IPCTSLIRGFCKVGKTRKATRVMEIVED  147 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  147 (580)
                      -..-.+.+...|++++|++.|..++........                .++..++..|.+.|++++|.+.+..+.+
T Consensus         7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~   83 (434)
T 4b4t_Q            7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTE   83 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344567788889999999999998876322111                1244555666666666666666655443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.39  E-value=1.9e-05  Score=77.84  Aligned_cols=23  Identities=9%  Similarity=0.039  Sum_probs=14.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhC
Q 043144          333 INFLCRKGLLGRAIDILEKMPKH  355 (580)
Q Consensus       333 ~~~~~~~g~~~~a~~~~~~~~~~  355 (580)
                      .+.+.+.|++++|++.|..+.+.
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~   33 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDK   33 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhh
Confidence            44455666777777777666654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.36  E-value=8.8e-06  Score=64.58  Aligned_cols=93  Identities=16%  Similarity=0.008  Sum_probs=55.8

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDT---ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPN---VITYNSIML  509 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~  509 (580)
                      .+...+...|++++|...|+++.+.. +.+.   ..+..+..++...|++++|...|+++.+..+. +   ...+..++.
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence            34555666667777777776666542 1122   35555666666666666666666666654332 2   445566666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 043144          510 GLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       510 ~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ++...|++++|...++++++.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            666666666666666666654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.34  E-value=2.8e-06  Score=70.54  Aligned_cols=133  Identities=14%  Similarity=0.076  Sum_probs=82.0

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC----CCC-CHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK-PD----TITYSSLVGGLSREGKVDEAIKLFHDLERLG----VRP-NVI  502 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~  502 (580)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...++++.+..    ..+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455555566666666666666665432100 11    1355666667777777777777777764321    111 134


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMVTR----SCK-PTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      .+..+..++...|++++|.+.+++.++.    +.+ ....++..++.++...|++++|.+.+++..+.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            5667777788888888888888777643    111 11345677788888888888888888877653

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.34  E-value=2.8e-06  Score=84.51  Aligned_cols=119  Identities=11%  Similarity=0.041  Sum_probs=96.2

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      +...+.+.|++++|++.|+++++. .+.+..+|..+..+|.+.|++++|...+++..+.. +.+...+..++.+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL-NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            344566789999999999999887 45568899999999999999999999999999886 6678899999999999999


Q ss_pred             hhHHHHHHHHc-C-CCCCcchHHHHHHH--HHhcCChhHHHHHHH
Q 043144          170 IDNALQVLERM-S-VAPDVVTYNTILRT--LCDSGKLNLAMEVLH  210 (580)
Q Consensus       170 ~~~A~~~~~~~-~-~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  210 (580)
                      +++|++.|+++ . .+.+...+..+..+  +.+.|++++|++.++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999987 2 23445567667666  888899999999988

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.33  E-value=1e-05  Score=64.15  Aligned_cols=92  Identities=12%  Similarity=0.001  Sum_probs=64.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---HHHHHHH
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDI---IPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD---VITYNVL  160 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l  160 (580)
                      +..+...+...|++++|+..|+.++... |.+.   ..+..+..++.+.|++++|...|+.+.... |.+   ...+..+
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l   82 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL   82 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence            4456667777888888888888777652 2233   466677777778888888888887777654 333   5566667


Q ss_pred             HHHHHhcCChhHHHHHHHHc
Q 043144          161 ISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~  180 (580)
                      +.+|...|++++|+..|+++
T Consensus        83 a~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           83 GLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            77777777777777777776

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.32  E-value=6.7e-07  Score=69.90  Aligned_cols=84  Identities=15%  Similarity=0.093  Sum_probs=64.3

Q ss_pred             HcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHH
Q 043144           96 RNGELEEGFKFLESMVYHG--DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNA  173 (580)
Q Consensus        96 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  173 (580)
                      ..|++++|+..|++++..+  .+.+..++..+..+|...|++++|...|++..+.. |.+...+..++.++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            3578888888888888764  34455778888888888888888888888888776 55677888888888888888888


Q ss_pred             HHHHHHc
Q 043144          174 LQVLERM  180 (580)
Q Consensus       174 ~~~~~~~  180 (580)
                      +..|++.
T Consensus        81 ~~~~~~a   87 (117)
T 3k9i_A           81 VELLLKI   87 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888876

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.32  E-value=5.7e-06  Score=68.90  Aligned_cols=99  Identities=11%  Similarity=0.012  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------CC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTK--------GL---------KPDTITYSSLVGGLSREGKVDEAIKLFHDLE  493 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------~~---------~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  493 (580)
                      ...+......+.+.|++++|+..|.+.+..        ..         +.+...|..+..++.+.|++++|+..++++.
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445666777777888888888888877653        00         1122456666667777777777777777776


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          494 RLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       494 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +..+. +...|..++.+|...|++++|+..+++.++.
T Consensus        91 ~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           91 KREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            65433 5666667777777777777777777777655

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.31  E-value=6.3e-06  Score=81.65  Aligned_cols=150  Identities=15%  Similarity=0.043  Sum_probs=90.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------HHHHHHHHH
Q 043144          375 KKMDRAIEYLEIMVSRGCYP-DIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPV--------------LITYNTVID  439 (580)
Q Consensus       375 ~~~~~A~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~  439 (580)
                      +++++|+..|+...+.  .| ....+..+...+.+.|++++|...|+++.+......              ...|..+..
T Consensus       248 ~~~~~A~~~~~~~~~~--~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKE--KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEECCCCGGGSCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHH--HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3444555544433322  12 344778888889999999999999998877542111              355666666


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          440 GLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR  519 (580)
Q Consensus       440 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  519 (580)
                      +|.+.|++++|+..+++.++.. +.+...|..+..+|...|++++|...|+++.+..+. +...+..+..++...+++++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            6667777777777777666553 234556666666666777777777777766665433 44556666666666666655


Q ss_pred             HHH-HHHHHH
Q 043144          520 AID-ILADMV  528 (580)
Q Consensus       520 A~~-~~~~~~  528 (580)
                      +.+ .++.|.
T Consensus       404 a~~~~~~~~f  413 (457)
T 1kt0_A          404 RDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            543 344443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.28  E-value=1.1e-05  Score=77.35  Aligned_cols=140  Identities=7%  Similarity=-0.048  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG  475 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  475 (580)
                      ...+..+...+.+.|++++|...|+++.+..  +..          ......       ++..... +.+...|..+..+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKLQ-PVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHHH-HHHHHHHHHHHHH
Confidence            3456667777777777777777777766421  000          000001       1111110 1235677788888


Q ss_pred             HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144          476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEA  555 (580)
Q Consensus       476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  555 (580)
                      +.+.|++++|+..++++.+..+. +...|..+..+|...|++++|++.++++++.. +.+...+..+..++...++.+++
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999888876544 67788888888889999999999998888763 55677888888888887777776


Q ss_pred             HH
Q 043144          556 LD  557 (580)
Q Consensus       556 ~~  557 (580)
                      .+
T Consensus       361 ~k  362 (370)
T 1ihg_A          361 EK  362 (370)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.28  E-value=2.7e-06  Score=84.69  Aligned_cols=119  Identities=13%  Similarity=0.004  Sum_probs=81.0

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTY  518 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  518 (580)
                      ..+...|++++|.+.|++.++.. +.+...|..+..++.+.|++++|+..++++.+..+. +...|..++.+|...|+++
T Consensus        14 ~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~   91 (477)
T 1wao_1           14 NDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFR   91 (477)
T ss_dssp             SSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence            34556777888888887777653 335677777777888888888888888888776543 6677777778888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 043144          519 RAIDILADMVTRSCKPTEATYTILIEG--IAYEGLAKEALDLLN  560 (580)
Q Consensus       519 ~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  560 (580)
                      +|.+.++++++.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        92 eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           92 AALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            8888888877653 3344555555555  677788888877777

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.27  E-value=6e-06  Score=81.79  Aligned_cols=119  Identities=10%  Similarity=-0.014  Sum_probs=83.0

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCC---------------hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPD---------------IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA  150 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  150 (580)
                      .+..+...+.+.|++++|+..|++++... +.+               ..+|..+..+|.+.|++++|+..|++++... 
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-  347 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-  347 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence            45677788888999999999999888752 222               4566777777777777777777777777765 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCC-CCcchHHHHHHHHHhcCChhHHH
Q 043144          151 VPDVITYNVLISGYCRLGEIDNALQVLERM-SVA-PDVVTYNTILRTLCDSGKLNLAM  206 (580)
Q Consensus       151 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~A~  206 (580)
                      +.+...|..++.+|...|++++|+..|+++ ... .+..++..+..++.+.++.+++.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            556677777777777777777777777776 333 34556666777776666666554

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=1.5e-05  Score=64.51  Aligned_cols=96  Identities=11%  Similarity=0.016  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLERLGVRP------N-----VITYNSIMLGLCKARQTYRAIDILADMVTR-------  530 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  530 (580)
                      +......+...|++++|+..|+++++..+..      +     ...|..+..++...|++++|+..+++.++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444455556666666666666665443221      2     226777777777777777777777777764       


Q ss_pred             CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          531 SCKPTEATY----TILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       531 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      . +.+...|    ...+.++...|++++|+..|++.++.
T Consensus        94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            3 3345567    77777778888888888888777653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.25  E-value=2.2e-06  Score=66.90  Aligned_cols=86  Identities=15%  Similarity=0.137  Sum_probs=53.2

Q ss_pred             CCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 043144          444 VGKTEQAMKLLEEMRTKGL--KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       444 ~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      .|++++|+..|++.++.+.  +.+...+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            4566667777776665421  223445666666777777777777777777665544 5666666777777777777777


Q ss_pred             HHHHHHHHc
Q 043144          522 DILADMVTR  530 (580)
Q Consensus       522 ~~~~~~~~~  530 (580)
                      ..+++.+..
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            777776654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.24  E-value=2.9e-06  Score=70.40  Aligned_cols=95  Identities=13%  Similarity=0.049  Sum_probs=57.4

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CC-CCHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDI-PD----IIPCTSLIRGFCKVGKTRKATRVMEIVEDSG----AV-PDVI  155 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~-~~~~  155 (580)
                      .+..+...+...|++++|+..+++++..... ++    ..++..+...+...|++++|...+++..+..    .+ ....
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            5667777788888888888888877654110 11    1356666677777777777777776655421    00 0133


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          156 TYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       156 ~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      ++..++..+...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            4555556666666666666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.24  E-value=5.1e-05  Score=76.89  Aligned_cols=173  Identities=8%  Similarity=-0.013  Sum_probs=134.6

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-
Q 043144          377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGK----------VDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVG-  445 (580)
Q Consensus       377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-  445 (580)
                      .++|++.+++++...+. +..+|+.-..++...|+          +++++++++.+.+.+ +.+..+|+.-..++.+.| 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence            46778888888876433 44466666666666666          888899998888766 456778888888888888 


Q ss_pred             -CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---------
Q 043144          446 -KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG-KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKA---------  514 (580)
Q Consensus       446 -~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  514 (580)
                       +++++++.++++.+.. +-+...|+.-...+.+.| .++++++.++++.+..+. |...|+....++...         
T Consensus       123 ~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence             6799999999998875 347788888888888888 889999999999887766 788888877777663         


Q ss_pred             -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 043144          515 -----RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKE  554 (580)
Q Consensus       515 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  554 (580)
                           +.++++++.+++++... |.+...|..+...+.+.|+.++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                 55789999999998774 7778899988888887777544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.22  E-value=3.4e-06  Score=79.93  Aligned_cols=154  Identities=12%  Similarity=-0.041  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGG  475 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~  475 (580)
                      ...+..+...+.+.|++++|...|++.....  |+...       +...|+.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            4466777777888888888888888877654  33221       223344444433221          1367788889


Q ss_pred             HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHH
Q 043144          476 LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI-AYEGLAKE  554 (580)
Q Consensus       476 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~  554 (580)
                      +.+.|++++|+..++++.+..+. +...|..+..+|...|++++|+..|+++++.. +.+...+..+.... ...+..+.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999876544 78889999999999999999999999987652 44556666666653 45677888


Q ss_pred             HHHHHHHHHhCCCCCc
Q 043144          555 ALDLLNQLCSRGVVKK  570 (580)
Q Consensus       555 A~~~~~~~~~~g~~~~  570 (580)
                      +.+++++|....+..+
T Consensus       318 a~~~~~~~l~~~p~~~  333 (338)
T 2if4_A          318 QKEMYKGIFKGKDEGG  333 (338)
T ss_dssp             ----------------
T ss_pred             HHHHHHHhhCCCCCCC
Confidence            8899999887665443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.20  E-value=5.8e-05  Score=60.63  Aligned_cols=112  Identities=9%  Similarity=-0.044  Sum_probs=81.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 043144          445 GKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----ARQTYRA  520 (580)
Q Consensus       445 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  520 (580)
                      +++++|++.|++..+.+ .|+..    |...|...+.+++|.+.|++..+.+   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            35677788888777776 33333    6666667777777888888887754   56667777777777    6788888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 043144          521 IDILADMVTRSCKPTEATYTILIEGIAY----EGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~  567 (580)
                      .+++++..+.|   ++..+..|...|..    .++.++|.+++++..+.|.
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            88888887764   56777777777777    7888888888888887763

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.18  E-value=1.3e-05  Score=66.70  Aligned_cols=100  Identities=12%  Similarity=0.052  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------C---------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 043144          396 IVTYNTLLTALCKDGKVDVAVEILNQLSNK--------H---------CSPVLITYNTVIDGLSKVGKTEQAMKLLEEMR  458 (580)
Q Consensus       396 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--------~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  458 (580)
                      ...+......+.+.|++++|...|......        .         .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            346677777788888888888888877654        1         01123567777777888888888888888887


Q ss_pred             HCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 043144          459 TKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLG  496 (580)
Q Consensus       459 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  496 (580)
                      ... +.+...|..+..++...|++++|...|+++.+..
T Consensus        91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            754 3456777778888888888888888888887654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.15  E-value=9.4e-06  Score=77.73  Aligned_cols=93  Identities=13%  Similarity=0.007  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhC---------------CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYH---------------GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAV  151 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  151 (580)
                      +..+...+.+.|++++|+..|++++..               ..+.+..+|..+..+|.+.|++++|+..++++++.. +
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID-P  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-T
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-c
Confidence            566777888888888888888887752               011122344444444444444444444444444433 3


Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          152 PDVITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       152 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      .+...+..++.+|...|++++|+..|+++
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~~l~~A  333 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALADLKKA  333 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            33444444444444444444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.13  E-value=1.7e-05  Score=64.16  Aligned_cols=63  Identities=13%  Similarity=0.081  Sum_probs=43.6

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCC-C-----Ch-----hhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDI-P-----DI-----IPCTSLIRGFCKVGKTRKATRVMEIVEDS  148 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-----~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  148 (580)
                      .+......+...|++++|+..|+++++..+. |     +.     ..|..+..++.+.|++++|+..+++.++.
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l   86 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY   86 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            5677788889999999999999999876322 1     12     25666666666666666666666665543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.11  E-value=7e-06  Score=77.72  Aligned_cols=92  Identities=15%  Similarity=0.086  Sum_probs=52.4

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChh------------------hHHHHHHHHHhcCChHHHHHHHHHHHh
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDII------------------PCTSLIRGFCKVGKTRKATRVMEIVED  147 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~  147 (580)
                      .+..+...+.+.|++++|+..|++++...  |+..                  .|..+..+|.+.|++++|+..+++.+.
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45666777888999999999999988752  2222                  344444444455555555555554444


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          148 SGAVPDVITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       148 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      .. +.+...|..++.+|...|++++|+..|+++
T Consensus       259 ~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          259 EE-EKNPKALFRRGKAKAELGQMDSARDDFRKA  290 (338)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            33 334444444445555555555555555444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.08  E-value=0.00018  Score=72.88  Aligned_cols=161  Identities=12%  Similarity=0.063  Sum_probs=135.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC
Q 043144          411 KVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK----------TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG  480 (580)
Q Consensus       411 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g  480 (580)
                      ..++|++.++.+...+ +.+...|+.-..++...|+          ++++++.++.+.+.. +-+..+|..-...+.+.|
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence            4467899999999876 3456778877777777777          899999999999875 347888988888889999


Q ss_pred             --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 043144          481 --KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR-QTYRAIDILADMVTRSCKPTEATYTILIEGIAYE--------  549 (580)
Q Consensus       481 --~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------  549 (580)
                        ++++++..++++.+..++ +..+|+.-..++...| .++++++.++++++.. +.+...|.....++...        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              779999999999988766 8999999888889999 8999999999999874 77889999888887663        


Q ss_pred             ------CCHHHHHHHHHHHHhCCCCCchhHHH
Q 043144          550 ------GLAKEALDLLNQLCSRGVVKKSSAEQ  575 (580)
Q Consensus       550 ------g~~~~A~~~~~~~~~~g~~~~~~~~~  575 (580)
                            +.++++.+++++++...+.-.+.+.+
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y  231 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFY  231 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHH
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHH
Confidence                  56899999999999988777766654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.01  E-value=6e-06  Score=63.46  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHH
Q 043144          465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPT------EAT  538 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~  538 (580)
                      +...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|++++|++.++++++.. +.+      ...
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHH
Confidence            4456666777777778888888888877765443 56777777777888888888888888877542 333      556


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 043144          539 YTILIEGIAYEGLAKEALDLLNQ  561 (580)
Q Consensus       539 ~~~l~~~~~~~g~~~~A~~~~~~  561 (580)
                      +..+..++...|+++.|.+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHH
Confidence            66667777777766666554443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.97  E-value=7.6e-05  Score=59.93  Aligned_cols=110  Identities=10%  Similarity=-0.026  Sum_probs=67.9

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 043144           99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNAL  174 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  174 (580)
                      ++++|+++|+++.+.|. ++  ..  +...|...+.+++|.++|++..+.|   ++..+..|..+|..    .+++++|+
T Consensus        10 d~~~A~~~~~~aa~~g~-~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNE-MF--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTC-TT--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCC-Hh--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            56677777777776652 22  22  5556666666677777777776654   55666666666666    56666777


Q ss_pred             HHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 043144          175 QVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  216 (580)
                      ++|++.-...+...+..|...|..    .+++++|...|++..+.|
T Consensus        82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            766666222445556666666665    566666666666665554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.96  E-value=1.1e-05  Score=62.02  Aligned_cols=93  Identities=9%  Similarity=0.100  Sum_probs=66.0

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC------HHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD------VITYNV  159 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~  159 (580)
                      .+..+...+...|++++|+..|++++.. .|.+...+..+..++.+.|++++|...|++..... +.+      ...+..
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            6 KQKEQGNSLFKQGLYREAVHCYDQLITA-QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHH
Confidence            5666777778888888888888888776 34566777777888888888888888888877664 333      455666


Q ss_pred             HHHHHHhcCChhHHHHHHHHc
Q 043144          160 LISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       160 l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      +..++...|+++.|+..++++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~~  104 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDEL  104 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSSC
T ss_pred             HHHHHHHHHhHhhhHhHHHHh
Confidence            666666677766666655544

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.96  E-value=5.4e-05  Score=58.56  Aligned_cols=80  Identities=11%  Similarity=0.069  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  528 (580)
                      +|+..|++..+.. +.+...+..+...+...|++++|...|+++.+..+. +...|..+..+|...|++++|...+++.+
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4667777777653 345677777788888888888888888888765543 56677778888888888888888888776


Q ss_pred             Hc
Q 043144          529 TR  530 (580)
Q Consensus       529 ~~  530 (580)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.95  E-value=2.7e-05  Score=60.34  Aligned_cols=78  Identities=14%  Similarity=0.065  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          101 EEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       101 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      ++|+..|++++.. .|.+...+..+...|...|++++|...|++..... +.+...|..++.+|...|++++|+..|++.
T Consensus         2 ~~a~~~~~~al~~-~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQ-GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTT-TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3577788888776 45567788888888888888888888888888765 556778888888888888888888888876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.90  E-value=0.00016  Score=52.79  Aligned_cols=82  Identities=15%  Similarity=0.143  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      ...+..+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~   86 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            345566666667777777777777776654433 55666677777777777777777777776653 4456666666666


Q ss_pred             HHhc
Q 043144          546 IAYE  549 (580)
Q Consensus       546 ~~~~  549 (580)
                      +...
T Consensus        87 ~~~~   90 (91)
T 1na3_A           87 KQKQ   90 (91)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.85  E-value=2.4e-05  Score=63.16  Aligned_cols=97  Identities=14%  Similarity=-0.003  Sum_probs=70.4

Q ss_pred             HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKT----------RKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      ..+.+++++|++.++.++.. .|.+...|+.+..++...|++          ++|+..|++.++.. |.+..+|..++.+
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l-~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~a   89 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            34556788999999998887 466778888888888888765          48888888888876 5577788888888


Q ss_pred             HHhcC-----------ChhHHHHHHHHc-CCCCCcchHHHH
Q 043144          164 YCRLG-----------EIDNALQVLERM-SVAPDVVTYNTI  192 (580)
Q Consensus       164 ~~~~g-----------~~~~A~~~~~~~-~~~~~~~~~~~l  192 (580)
                      |...|           ++++|++.|+++ .+.|+...|..-
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~a  130 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKS  130 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            87764           677777777766 445555444333

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.84  E-value=3.8e-05  Score=75.87  Aligned_cols=122  Identities=10%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             HHhcCChHHHHHHHHHHHhC-----C--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--------C-CCCC-cchHHH
Q 043144          129 FCKVGKTRKATRVMEIVEDS-----G--AVPDVITYNVLISGYCRLGEIDNALQVLERM--------S-VAPD-VVTYNT  191 (580)
Q Consensus       129 ~~~~g~~~~A~~~~~~~~~~-----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~  191 (580)
                      +..+|++++|..++++..+.     |  .+....+++.|+..|...|++++|..+++++        | ..|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44566666666666655432     1  0112345666666666666666666666654        1 1122 335667


Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhC-----CCC-C-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc
Q 043144          192 ILRTLCDSGKLNLAMEVLHKQLEK-----ECY-P-DVITYTILIEATCKESGVGQAMKLLDEMRNK  250 (580)
Q Consensus       192 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~  250 (580)
                      |+..|...|++++|..+++++++.     |.. | ...+...+...+...+.+.+|+.+|..+++.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777777777777777776666532     211 1 1223445556666777788888888777653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.81  E-value=0.00018  Score=52.57  Aligned_cols=80  Identities=11%  Similarity=0.074  Sum_probs=53.3

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      .+..+...+...|++++|+..|++++.. .+.+..++..+..++.+.|++++|...|++..... |.+...+..+..++.
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~   88 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            4556667777777777777777777665 34455666777777777777777777777776654 445666666666554


Q ss_pred             hc
Q 043144          166 RL  167 (580)
Q Consensus       166 ~~  167 (580)
                      ..
T Consensus        89 ~~   90 (91)
T 1na3_A           89 KQ   90 (91)
T ss_dssp             HH
T ss_pred             hc
Confidence            43

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.77  E-value=0.00013  Score=72.12  Aligned_cols=97  Identities=8%  Similarity=-0.037  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCC--
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLER-----LGVR-PN-VITYNSIMLGLCKARQTYRAIDILADMVTR---SCKPT--  535 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~--  535 (580)
                      +++.|..+|...|++++|..+++++.+     .|.. |+ ..+++.|+..|...|++++|..+++++++-   -+.|+  
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            455555555555555555555555431     2221 11 234555566666666666666666555421   11111  


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          536 --EATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       536 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                        ..+...+..++...|++++|..+++++.+
T Consensus       433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              22334444555556666666666666544

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.71  E-value=0.0001  Score=59.46  Aligned_cols=87  Identities=15%  Similarity=0.030  Sum_probs=62.7

Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 043144          442 SKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV----------DEAIKLFHDLERLGVRPNVITYNSIMLGL  511 (580)
Q Consensus       442 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  511 (580)
                      .+.+.+++|.+.++..++.. +.+...|..+..++...+++          ++|+..|+++++.++. +..+|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            45566788888888877764 34677777777777776654          4788888888776554 667777788887


Q ss_pred             HhcC-----------CHHHHHHHHHHHHHc
Q 043144          512 CKAR-----------QTYRAIDILADMVTR  530 (580)
Q Consensus       512 ~~~g-----------~~~~A~~~~~~~~~~  530 (580)
                      ...|           ++++|++.|+++++.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l  120 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE  120 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence            7664           677788888777765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.70  E-value=9.2e-05  Score=55.55  Aligned_cols=62  Identities=23%  Similarity=0.200  Sum_probs=34.2

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      +...+..+..+|.+.|++++|+..|+++.+.. |.+...|..++.+|...|++++|++.|++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   67 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQG   67 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44455555555555555555555555555544 334445555555555555555555555544

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.62  E-value=0.00036  Score=52.21  Aligned_cols=65  Identities=23%  Similarity=0.189  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +...+..+...+...|++++|+..|+++.+..+. +...|..+..+|...|++++|++.+++.++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            5667778888888888888888888888776544 5667788888888888888888888887643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.34  E-value=0.0024  Score=46.69  Aligned_cols=68  Identities=13%  Similarity=0.016  Sum_probs=31.4

Q ss_pred             CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          500 NVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      +...+..+..++...++   .++|..++++.++.. +.+...+..++..+.+.|++++|+..|+++.+..+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            34444444444433222   345555555554442 334444444555555555555555555555544433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.27  E-value=0.00079  Score=50.06  Aligned_cols=82  Identities=12%  Similarity=0.152  Sum_probs=54.8

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144           89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDII-PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL  167 (580)
Q Consensus        89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (580)
                      .....+...|++++|+..|++++.. .+.+.. .+..+..+|...|++++|...|++..+.. +.+...+..        
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------   74 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQT-EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH-CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH-CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------
Confidence            3456677788888888888888775 344556 77777888888888888888888877765 333333311        


Q ss_pred             CChhHHHHHHHHc
Q 043144          168 GEIDNALQVLERM  180 (580)
Q Consensus       168 g~~~~A~~~~~~~  180 (580)
                      +.+.++...|++.
T Consensus        75 ~~~~~a~~~~~~~   87 (99)
T 2kc7_A           75 KMVMDILNFYNKD   87 (99)
T ss_dssp             HHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHH
Confidence            3445555555554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.25  E-value=0.00037  Score=51.91  Aligned_cols=57  Identities=11%  Similarity=0.137  Sum_probs=35.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          473 VGGLSREGKVDEAIKLFHDLERLGVRPNVI-TYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ...+...|++++|...++++.+..+. +.. .+..++.+|...|++++|++.++++++.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            34555666666666666666654433 445 6666666666667777777777666655

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.19  E-value=0.0051  Score=57.17  Aligned_cols=152  Identities=12%  Similarity=-0.003  Sum_probs=76.1

Q ss_pred             CCCChhhHHHHHHHH--HhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchH
Q 043144          115 DIPDIIPCTSLIRGF--CKVGK---TRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTY  189 (580)
Q Consensus       115 ~~~~~~~~~~l~~~~--~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  189 (580)
                      .+.+...|...+++.  ...++   ..+|..+|++.++.. |.....|..+..+|..          ....+ +.+....
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~----------~~~~~-~~~~~~~  257 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIV----------RHSQH-PLDEKQL  257 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH----------HHHHS-CCCHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH----------HhccC-CCchhhH
Confidence            455666777666553  33333   468888899888876 4455566655555541          00001 0000000


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 043144          190 NTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE  269 (580)
Q Consensus       190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  269 (580)
                      ..+          ..+...... .. ..+.+..++..+...+...|++++|...+++++..+  |+...|..+...+.-.
T Consensus       258 ~~l----------~~a~~a~~a-~~-~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~  323 (372)
T 3ly7_A          258 AAL----------NTEIDNIVT-LP-ELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMK  323 (372)
T ss_dssp             HHH----------HHHHHHHHT-CG-GGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHT
T ss_pred             HHH----------HHHHHHHHh-cc-cCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHC
Confidence            000          111110000 01 113345555555555555566666666666666653  4555555556666666


Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHHHH
Q 043144          270 GRLDEAIKFLNDMPSYGCQPNVITH  294 (580)
Q Consensus       270 g~~~~A~~~~~~~~~~~~~~~~~~~  294 (580)
                      |++++|.+.|++....  .|...+|
T Consensus       324 G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          324 GMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CCHHHHHHHHHHHHhc--CCCcChH
Confidence            6666666666665554  3444443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.10  E-value=0.0096  Score=55.38  Aligned_cols=65  Identities=14%  Similarity=0.090  Sum_probs=33.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          500 NVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +..+|..+...+...|++++|...+++++..+  |+...|..++..+.-.|++++|.+.++++...+
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~  340 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR  340 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            44445444444444455555555555555443  444444455555555555555555555555544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.05  E-value=0.00078  Score=63.93  Aligned_cols=231  Identities=12%  Similarity=0.039  Sum_probs=147.7

Q ss_pred             cccCCCccccccccCCCCCcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHH
Q 043144           65 HLNNGHISSGMENSSLNFEDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEI  144 (580)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  144 (580)
                      ++..+.+..++..--..-++..|..++....+.|.+++-+++++-+.+.  ..++.+=+.|+-+|++.++..+-.+.+  
T Consensus        64 qL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl--  139 (624)
T 3lvg_A           64 QLQKGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFI--  139 (624)
T ss_dssp             TTTSSSCTTTTTSSCCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT--
T ss_pred             HHccCchHHHHHHHHhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH--
Confidence            3344444443332222335678889999999999999999988776554  445666778899999999876544433  


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-----------------------CCCCCcchHHHHHHHHHhcCC
Q 043144          145 VEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-----------------------SVAPDVVTYNTILRTLCDSGK  201 (580)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----------------------~~~~~~~~~~~l~~~~~~~g~  201 (580)
                        .   .|++.-...+++-|...|.++.|.-+|..+                       ....+..+|..+-.+|...++
T Consensus       140 --~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~E  214 (624)
T 3lvg_A          140 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKE  214 (624)
T ss_dssp             --S---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCT
T ss_pred             --c---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchH
Confidence              1   355555566788888888888888777765                       113456788888888888888


Q ss_pred             hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          202 LNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLND  281 (580)
Q Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  281 (580)
                      +..|.-.--.++-.     ..-...++..|-..|-+++-+.+++...... ......|+-|.-.|++- +.++..+.++.
T Consensus       215 frLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlkl  287 (624)
T 3lvg_A          215 FRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLEL  287 (624)
T ss_dssp             TTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTT
T ss_pred             HHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence            87775443333321     2223346667778888888888888876432 23566777777777765 34555554443


Q ss_pred             hhh-CCCCC------CHHHHHHHHHHHHhcCChHHHH
Q 043144          282 MPS-YGCQP------NVITHNIILRSMCSTGRWMDAE  311 (580)
Q Consensus       282 ~~~-~~~~~------~~~~~~~ll~~~~~~~~~~~a~  311 (580)
                      .-. .+++.      ....|.-++..|..-.+++.|.
T Consensus       288 f~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          288 FWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            221 12211      2344666666677667776654

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.00  E-value=0.0037  Score=60.61  Aligned_cols=86  Identities=9%  Similarity=-0.008  Sum_probs=40.4

Q ss_pred             hCCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-CC-HHHHHHHH
Q 043144          443 KVGKTEQAMKLLEEMRTK---GLKPD----TITYSSLVGGLSREGKVDEAIKLFHDLER-----LGVR-PN-VITYNSIM  508 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~~~~l~  508 (580)
                      ..|++++|..++++.++.   -+.|+    ..+++.|..+|...|++++|+.+++++..     .|.. |+ ..+++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            345555555555554431   11111    23455555555555555555555555431     2211 11 22345555


Q ss_pred             HHHHhcCCHHHHHHHHHHHH
Q 043144          509 LGLCKARQTYRAIDILADMV  528 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~  528 (580)
                      ..|...|++++|..++++++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHH
Confidence            55555555555555555554

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.96  E-value=0.0055  Score=48.84  Aligned_cols=82  Identities=13%  Similarity=0.127  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043144          447 TEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREG---KVDEAIKLFHDLERLGVRP--NVITYNSIMLGLCKARQTYRAI  521 (580)
Q Consensus       447 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  521 (580)
                      ...+.+-|.+....+ .++..+...+..++++.+   ++++++.+|++..+.. .|  +...+..|..+|.+.|++++|+
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            344555555555544 355666666666666666   4556666666665543 12  2344445555666666666666


Q ss_pred             HHHHHHHHc
Q 043144          522 DILADMVTR  530 (580)
Q Consensus       522 ~~~~~~~~~  530 (580)
                      +.++.+++.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            666666654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.90  E-value=0.05  Score=58.11  Aligned_cols=156  Identities=15%  Similarity=0.165  Sum_probs=102.7

Q ss_pred             HHHHHHcCChHHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144           91 LRRLVRNGELEEGFK-FLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGE  169 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  169 (580)
                      .......+++++|.+ ++..+      ++......++..+.+.|..+.|.++.+         +..   .-.......|+
T Consensus       606 ~~~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~---------~~~---~~f~~~l~~~~  667 (814)
T 3mkq_A          606 FQTLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISP---------DQD---QKFELALKVGQ  667 (814)
T ss_dssp             HHHHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCC---------CHH---HHHHHHHHHTC
T ss_pred             HhHHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCC---------Ccc---hheehhhhcCC
Confidence            345567889999877 55221      112223677788889999999887663         111   11344567899


Q ss_pred             hhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144          170 IDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN  249 (580)
Q Consensus       170 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  249 (580)
                      +++|+++.+.+   .+...|..++..+.+.|+++.|.+.|.++.+         |..+...+...|+.+...++-+....
T Consensus       668 ~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          668 LTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999998766   4678999999999999999999999987643         34555556666666665555554444


Q ss_pred             cCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          250 KGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM  282 (580)
Q Consensus       250 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  282 (580)
                      .|      -++.-..+|.+.|++++|+++|.++
T Consensus       736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence            32      1233334455566666666665544

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.90  E-value=3e-05  Score=73.27  Aligned_cols=245  Identities=9%  Similarity=0.036  Sum_probs=147.9

Q ss_pred             CcccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144           83 EDFESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLIS  162 (580)
Q Consensus        83 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  162 (580)
                      .+..|..+..+....|+..+|++-|-++      .|...|..++.++.+.|.+++-.+.+...++.  ..++.+=+.|+-
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~  124 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF  124 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence            3468899999999999999998766332      36667888999999999999999999877765  345555668999


Q ss_pred             HHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCC--------------------CCCChh
Q 043144          163 GYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKE--------------------CYPDVI  222 (580)
Q Consensus       163 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------------~~~~~~  222 (580)
                      +|++.++..+-.+++.    .||..-...++.-|...|.++.|.-+|..+....                    -..+..
T Consensus       125 ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          125 ALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             HHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             HHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            9999988765444332    4676667778888888888888777665432210                    012455


Q ss_pred             hHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHH
Q 043144          223 TYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMC  302 (580)
Q Consensus       223 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~  302 (580)
                      +|..+-.+|...+.+.-|.-.--.+.-.     ..-...++..|-..|.+++-+.+++.-.... ......++-|.-.|+
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYs  274 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS  274 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHH
Confidence            6666666666666665554433333211     1122234445566666666666666554322 334455555555554


Q ss_pred             hcCChHHHHHHHHHHHHc-CCC------CChhhHHHHHHHHHhcCCHHHHH
Q 043144          303 STGRWMDAERLLAEMVLK-GCS------PSVVTFNILINFLCRKGLLGRAI  346 (580)
Q Consensus       303 ~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l~~~~~~~g~~~~a~  346 (580)
                      +- +.++..+.++....+ +++      .....|..+.-.|.+-.+++.|.
T Consensus       275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            43 333333333322111 111      12345666666666666666554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.88  E-value=0.014  Score=42.58  Aligned_cols=63  Identities=6%  Similarity=-0.021  Sum_probs=34.3

Q ss_pred             CChhhHHHHHHHHHhcCC---hHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          117 PDIIPCTSLIRGFCKVGK---TRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       117 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      ++...+..+..++...++   .++|..++++....+ |.++.....++..+.+.|++++|+..|+++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344455555555543333   455666666555554 445555555555555566666666665555

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.83  E-value=0.011  Score=57.37  Aligned_cols=93  Identities=13%  Similarity=-0.009  Sum_probs=48.8

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----CCCC-CC-HHH
Q 043144          438 IDGLSKVGKTEQAMKLLEEMRTKG---LKPD----TITYSSLVGGLSREGKVDEAIKLFHDLER-----LGVR-PN-VIT  503 (580)
Q Consensus       438 ~~~~~~~g~~~~A~~~~~~m~~~~---~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~-~~-~~~  503 (580)
                      +..+...|++++|..++++.++..   +.|+    ..+++.++.+|...|++++|+.+++++..     .|.. |+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            333445566666666666665431   1111    23455566666666666666666665532     2211 21 234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          504 YNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       504 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ++.|+..|...|++++|..+++++++-
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            555666666666666666666666543

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.77  E-value=0.002  Score=62.56  Aligned_cols=82  Identities=7%  Similarity=0.039  Sum_probs=38.0

Q ss_pred             cCChHHHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHc--------C-CCCC-cchHHHHHH
Q 043144          132 VGKTRKATRVMEIVEDS---GAVP----DVITYNVLISGYCRLGEIDNALQVLERM--------S-VAPD-VVTYNTILR  194 (580)
Q Consensus       132 ~g~~~~A~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~-~~~~-~~~~~~l~~  194 (580)
                      .|++++|..++++..+.   -+.+    ...+++.|+.+|...|++++|+.+++++        | ..|+ ..+++.|+.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            35555666555554431   0111    1234555555555555555555555544        1 1111 223445555


Q ss_pred             HHHhcCChhHHHHHHHHHH
Q 043144          195 TLCDSGKLNLAMEVLHKQL  213 (580)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~~  213 (580)
                      .|...|++++|..++++++
T Consensus       391 ~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHH
Confidence            5555555555555544443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.75  E-value=0.067  Score=57.11  Aligned_cols=153  Identities=19%  Similarity=0.160  Sum_probs=93.4

Q ss_pred             HHhcCChhHHHH-HHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHH
Q 043144          164 YCRLGEIDNALQ-VLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMK  242 (580)
Q Consensus       164 ~~~~g~~~~A~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  242 (580)
                      ....+++++|.+ ++..+   ++......++..+.+.|..++|+++.+.         .   ..-.......|++++|.+
T Consensus       609 ~~~~~~~~~a~~~~l~~i---~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~---~~~f~~~l~~~~~~~A~~  673 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV---EGKDSLTKIARFLEGQEYYEEALNISPD---------Q---DQKFELALKVGQLTLARD  673 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC---CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------H---HHHHHHHHHHTCHHHHHH
T ss_pred             HHHhCCHHHHHHHHHhcC---CchHHHHHHHHHHHhCCChHHheecCCC---------c---chheehhhhcCCHHHHHH
Confidence            345778888877 55332   2122336777777888888888765421         1   111334556788888888


Q ss_pred             HHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          243 LLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                      +.+.+      .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...++.+...++.+.....| 
T Consensus       674 ~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~-  737 (814)
T 3mkq_A          674 LLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG-  737 (814)
T ss_dssp             HHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT-
T ss_pred             HHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence            76433      3678888888888889999988888887753         3344445555666666555554444432 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                           -++....+|.+.|++++|.+++.++
T Consensus       738 -----~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          738 -----KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 1233334455556666666655443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.69  E-value=0.0075  Score=58.54  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=56.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCC---CC----CCHHHHHHHHHHHHhcCChhHHHHHHHHc---------CCCCC-cchH
Q 043144          127 RGFCKVGKTRKATRVMEIVEDSG---AV----PDVITYNVLISGYCRLGEIDNALQVLERM---------SVAPD-VVTY  189 (580)
Q Consensus       127 ~~~~~~g~~~~A~~~~~~~~~~~---~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~  189 (580)
                      ..+.++|++++|..++++..+..   +.    ....+++.|+..|...|++++|+.+++++         +..|+ ..++
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            33556677777777777766431   11    12345667777777777777777777765         11222 3357


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHh
Q 043144          190 NTILRTLCDSGKLNLAMEVLHKQLE  214 (580)
Q Consensus       190 ~~l~~~~~~~g~~~~A~~~~~~~~~  214 (580)
                      +.|+..|...|++++|..+++++++
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            7777778888888887777777654

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.63  E-value=0.17  Score=45.04  Aligned_cols=66  Identities=6%  Similarity=-0.028  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCC
Q 043144          503 TYNSIMLGLCKA-----RQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE-GLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       503 ~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~g~~  568 (580)
                      .|..++..|...     |+.++|.+.|+++++.+-.-+..++..+++.++.. |+.++|.+++++.++..+.
T Consensus       201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            444444444442     45555555555554432111244444444444442 4455555555555444443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.62  E-value=0.17  Score=41.45  Aligned_cols=100  Identities=14%  Similarity=0.230  Sum_probs=52.2

Q ss_pred             HhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHH
Q 043144          165 CRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLL  244 (580)
Q Consensus       165 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  244 (580)
                      .+.|+++.|.++.+.+   .+...|..|+......|+++-|...|.+..+         +..+.-.|.-.|+.+.-.++-
T Consensus        16 L~lg~l~~A~e~a~~l---~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL---NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHTTCHHHHHHHHHHH---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh---CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence            4455555555555544   2344556666666666666666555554422         233444455555555555444


Q ss_pred             HHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          245 DEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM  282 (580)
Q Consensus       245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  282 (580)
                      +.....|      -++.....+...|+++++.++|.+.
T Consensus        84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            4443332      2333444455566666666666554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.48  E-value=0.017  Score=43.22  Aligned_cols=71  Identities=8%  Similarity=-0.033  Sum_probs=48.4

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCC------CCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHG------DIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVIT  156 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  156 (580)
                      ..|..+...+...|++..|...|+.++...      ..+...++..+..++.+.|+++.|...++++.+.. |.+..+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~   82 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA   82 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence            356677888888888888888888876541      12334566777777777777777777777777654 334433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.40  E-value=0.22  Score=44.34  Aligned_cols=85  Identities=11%  Similarity=0.125  Sum_probs=53.9

Q ss_pred             hhHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHh-----cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc-CCH
Q 043144          202 LNLAMEVLHKQLEKECYPD---VITYTILIEATCK-----ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE-GRL  272 (580)
Q Consensus       202 ~~~A~~~~~~~~~~~~~~~---~~~~~~li~~~~~-----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~  272 (580)
                      ...|...++++++..  |+   ...|..+...|.+     -|+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleLD--P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDLW--PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHC--TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHhC--CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            345666666666643  43   4466667777776     377777777777777764332466666666766663 777


Q ss_pred             HHHHHHHHHhhhCCCC
Q 043144          273 DEAIKFLNDMPSYGCQ  288 (580)
Q Consensus       273 ~~A~~~~~~~~~~~~~  288 (580)
                      +++.+.+++..+....
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            7777777777665433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.36  E-value=0.036  Score=44.11  Aligned_cols=82  Identities=15%  Similarity=0.092  Sum_probs=43.3

Q ss_pred             HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 043144          483 DEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR---QTYRAIDILADMVTRSCKP--TEATYTILIEGIAYEGLAKEALD  557 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~  557 (580)
                      ..+.+.|.+....+. ++..+...+.+++++++   +.++++.++++..+.. .|  ....+..|+-+|.+.|++++|++
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            344444444444443 35555555555666555   4445666666655542 22  24455555555566666666666


Q ss_pred             HHHHHHhCC
Q 043144          558 LLNQLCSRG  566 (580)
Q Consensus       558 ~~~~~~~~g  566 (580)
                      +++++++..
T Consensus        93 y~~~lL~ie  101 (152)
T 1pc2_A           93 YVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            666665544

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.35  E-value=0.036  Score=41.34  Aligned_cols=73  Identities=7%  Similarity=-0.042  Sum_probs=53.4

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 043144          465 DTITYSSLVGGLSREGKVDEAIKLFHDLERLG------VRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEAT  538 (580)
Q Consensus       465 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  538 (580)
                      +..-...+...+...|+++.|...|+.+.+..      ..+...++..|..+|.+.|++++|+.+++++++.. |.+..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence            44555677888888999999999988876421      12346778888888999999999999998888752 334444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.33  E-value=0.027  Score=44.12  Aligned_cols=58  Identities=17%  Similarity=0.071  Sum_probs=38.1

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCchh
Q 043144          514 ARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVKKSS  572 (580)
Q Consensus       514 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~  572 (580)
                      .++.++|.++|+.+++.+-.. ...|...+.--.++|+.+.|++++.+.+..++++..-
T Consensus        73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence            367777777777776543222 6666666666677777777777777777776655433

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.17  E-value=0.059  Score=42.27  Aligned_cols=102  Identities=9%  Similarity=0.066  Sum_probs=54.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCh------hHHHHHHHHc--CCCCCcc-hHHHHHHHH------HhcCChhHHHHHHHHHHhC
Q 043144          151 VPDVITYNVLISGYCRLGEI------DNALQVLERM--SVAPDVV-TYNTILRTL------CDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       151 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~~~~~-~~~~l~~~~------~~~g~~~~A~~~~~~~~~~  215 (580)
                      +.|..+|-..+....+.|++      ++.+++|+++  .+||+.. .|...|..+      ...++.++|.++|+.+++.
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            44555666666666555666      5666666665  3344321 122211111      1235666666666666544


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC
Q 043144          216 ECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCI  253 (580)
Q Consensus       216 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~  253 (580)
                      . +--...|......-.++|++..|.+++...+..+..
T Consensus        90 h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           90 C-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             C-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             h-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            2 112445555555566677777777777776666544

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.45  Score=38.90  Aligned_cols=101  Identities=11%  Similarity=0.078  Sum_probs=59.5

Q ss_pred             HHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHH
Q 043144          231 TCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDA  310 (580)
Q Consensus       231 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a  310 (580)
                      ....|+++.|.++.+.+      .+...|..|.......|+++-|.+.|.+...         +..+.-.|...|+.+.-
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L   79 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL   79 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence            34567777777766554      1566777777777777777777777776653         33344445556666555


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          311 ERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       311 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  352 (580)
                      .++-+.....|      -++.....+...|+++++.++|.+.
T Consensus        80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~  115 (177)
T 3mkq_B           80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG  115 (177)
T ss_dssp             HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence            55544444432      2333444455566777776666543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.78  E-value=0.46  Score=36.42  Aligned_cols=65  Identities=14%  Similarity=0.181  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ......+..+...|.-++-.+++.+++.. -+|++.....++.+|.+.|+..+|.+++.++-++|+
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            34444555556666666666666664332 355666666666666666666666666666666664

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.76  E-value=0.072  Score=40.73  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHH---HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144          448 EQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDE---AIKLFHDLERLG-VRPNVITYNSIMLGLCKARQTYRAIDI  523 (580)
Q Consensus       448 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~  523 (580)
                      ..+.+-|.+....| .|+..+--.+..++.+..+...   ++.+++.+.+.+ +.-.....-.|+-++.+.|++++|++.
T Consensus        18 ~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~   96 (126)
T 1nzn_A           18 LKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY   96 (126)
T ss_dssp             HHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            33444444443333 2444444445555555554333   555555554432 101222333444455555555555555


Q ss_pred             HHHHHHc
Q 043144          524 LADMVTR  530 (580)
Q Consensus       524 ~~~~~~~  530 (580)
                      ++.+++.
T Consensus        97 ~~~lL~~  103 (126)
T 1nzn_A           97 VRGLLQT  103 (126)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.57  E-value=2.9  Score=44.16  Aligned_cols=256  Identities=13%  Similarity=0.112  Sum_probs=132.8

Q ss_pred             HHHhcCCHHHHHHHHHHhhhCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC-------CCChhhHHHHHHH
Q 043144          265 GICKEGRLDEAIKFLNDMPSYG--CQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGC-------SPSVVTFNILINF  335 (580)
Q Consensus       265 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~~  335 (580)
                      +....|+.++++.++......+  -.+....-..+.-+....|...++..++...+...-       .+....-.++.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            4456777777877777665421  112223333444455666666677777766665321       0111122222222


Q ss_pred             H--HhcCCHHHHHHHHHHhhhCCCCCCHh----hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 043144          336 L--CRKGLLGRAIDILEKMPKHGCTPNSL----SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKD  409 (580)
Q Consensus       336 ~--~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~  409 (580)
                      .  .-.++ +++.+.+..+....   +..    ....+...+.-.|+.+....++..+.+.. .-+..-...+.-++...
T Consensus       463 la~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~  537 (963)
T 4ady_A          463 LAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINY  537 (963)
T ss_dssp             HHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhC
Confidence            2  33344 34455555544431   221    11223344556677777777777666531 11222223333344467


Q ss_pred             CChHHHHHHHHHHHhCCCCCCHHHHH---HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144          410 GKVDVAVEILNQLSNKHCSPVLITYN---TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI  486 (580)
Q Consensus       410 g~~~~A~~~~~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  486 (580)
                      |+.+.+..+.+.+.... .| ..-|.   ++.-+|+..|+.....+++..+.... ..+..-...+.-++...|+.+.+.
T Consensus       538 g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          538 GRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             TCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             CChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence            88888888888777632 12 22232   23445667888777777888887642 223333333344555567766677


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 043144          487 KLFHDLERLGVRPNVITYNSIMLGLCKARQT-YRAIDILADMVT  529 (580)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~  529 (580)
                      +++..+.+.+ .|.+..-..+..+....|.. .+++..+..+..
T Consensus       615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            7776665543 34444333444444444443 678888888863

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=94.69  E-value=0.37  Score=36.80  Aligned_cols=83  Identities=16%  Similarity=0.083  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 043144          482 VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYR---AIDILADMVTRSCKP--TEATYTILIEGIAYEGLAKEAL  556 (580)
Q Consensus       482 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  556 (580)
                      +..+.+-|.+....+. ++..+-..+++++.++.+...   ++.++++..+.+ .|  .......|+-++.+.|++++|+
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            3444444444443332 455555556666666665444   666666665542 12  2344555566666666666666


Q ss_pred             HHHHHHHhCC
Q 043144          557 DLLNQLCSRG  566 (580)
Q Consensus       557 ~~~~~~~~~g  566 (580)
                      ++++.+++..
T Consensus        95 ~~~~~lL~~e  104 (126)
T 1nzn_A           95 KYVRGLLQTE  104 (126)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            6666666644

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.48  E-value=1.2  Score=34.14  Aligned_cols=135  Identities=12%  Similarity=0.100  Sum_probs=65.3

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcch---HHHHHHHHHhcCChhHHH
Q 043144          130 CKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVT---YNTILRTLCDSGKLNLAM  206 (580)
Q Consensus       130 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~  206 (580)
                      .-.|..++..++..+.....   +..-+|-+|.-....-+-+-..++++.+|---|...   ...++.+|++.+..    
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~----   90 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTL----   90 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCC----
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcch----
Confidence            44566666677666666532   344444445444444455555555555532222211   22333333333322    


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 043144          207 EVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYG  286 (580)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  286 (580)
                                    ...+...++.....|+-++-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+.|
T Consensus        91 --------------se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           91 --------------NEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             --------------CHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             --------------HHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence                          222333344445555555555555554321 23445555555556666666666666555555554

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.27  E-value=0.45  Score=38.22  Aligned_cols=118  Identities=7%  Similarity=-0.017  Sum_probs=68.8

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCC-CCCCh-------hhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCCHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHG-DIPDI-------IPCTSLIRGFCKVGKTRKATRVMEIVEDSG--AVPDVI  155 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~  155 (580)
                      .+..-+..+...|.++.|.-+.+.++... ..++.       .+...+++++...|++..|...|++.++..  .+.+..
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s  101 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK  101 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            45666889999999999999988865431 22331       356778899999999999999999865421  111111


Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHH
Q 043144          156 TYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQL  213 (580)
Q Consensus       156 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  213 (580)
                      +...+.    .......      ......+...-..+..+|.+.+++++|+.+++.+.
T Consensus       102 ~~~~~~----~~ss~p~------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip  149 (167)
T 3ffl_A          102 VRPSTG----NSASTPQ------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP  149 (167)
T ss_dssp             -------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             cccccc----ccCCCcc------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            111110    0000000      01112344455557777777777777777766543

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.15  E-value=0.23  Score=51.31  Aligned_cols=54  Identities=13%  Similarity=0.130  Sum_probs=36.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      ...|...|+++.|+.+-+++....+. +..+|..|+.+|...|+++.|+-.+..+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33455667777777777777665433 5677777777777777777777766655

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.13  E-value=0.68  Score=35.53  Aligned_cols=68  Identities=16%  Similarity=0.140  Sum_probs=32.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          498 RPNVITYNSIMLGLCKARQT---YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       498 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      .|+..+--.+++++.++.+.   .+++.+++++.+.+.......+..|+-++.+.|++++|+++.+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            34444444445555544432   344555555554331112344445555555555555555555555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=93.86  E-value=1.8  Score=33.76  Aligned_cols=68  Identities=10%  Similarity=0.072  Sum_probs=38.3

Q ss_pred             CCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          463 KPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .|+..+--.+..++.+..+   ..+++.+++.+.+.++.......-.|+.++.+.|++++|+++.+.+++.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            4555555555556655554   3456666666655433223334444555666677777777776666654

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=93.51  E-value=9  Score=40.60  Aligned_cols=256  Identities=9%  Similarity=0.085  Sum_probs=142.8

Q ss_pred             HHHhcCCHhHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC--C-----CCHHHHHHHHHH
Q 043144          230 ATCKESGVGQAMKLLDEMRNKGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGC--Q-----PNVITHNIILRS  300 (580)
Q Consensus       230 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~-----~~~~~~~~ll~~  300 (580)
                      +....|+.++++.+++..+..+...+  ...-..+.-+.+..|..+++.+++.......-  .     +....-.++.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            35567888888888877654210112  22333444556667776778887777654210  0     111222233333


Q ss_pred             HHhcCC-hHHHHHHHHHHHHcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhH--HHHHHHHHhcC
Q 043144          301 MCSTGR-WMDAERLLAEMVLKGCSPSVVTFN--ILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSY--NPVLHGFCKEK  375 (580)
Q Consensus       301 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~  375 (580)
                      ++..|. -+++...+..++.... +......  +|...+.-.|+.+....++..+.+..   +....  ..+.-++...|
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence            433343 2456666666665421 1111122  33344556788888888887766531   22333  33334455778


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144          376 KMDRAIEYLEIMVSRGCYPDIV-TY---NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAM  451 (580)
Q Consensus       376 ~~~~A~~~~~~~~~~~~~~~~~-~~---~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  451 (580)
                      +.+.+..+.+.+...   .++. -|   ..+.-+|+..|+......++..+.+.. ..++.....+.-++...|+.+.+.
T Consensus       539 ~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~  614 (963)
T 4ady_A          539 RQELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVP  614 (963)
T ss_dssp             CGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred             ChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHH
Confidence            888888888887764   2333 22   344556788899777777888887642 222332333333444577777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHHh
Q 043144          452 KLLEEMRTKGLKPDTITYSSLVGGLSREGKV-DEAIKLFHDLER  494 (580)
Q Consensus       452 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~  494 (580)
                      ++++.+.+.+ .|...--..+.-+....|+. .++...+..+..
T Consensus       615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            7777666543 44444334444444445443 678888888874

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.25  E-value=2.8  Score=46.44  Aligned_cols=168  Identities=13%  Similarity=0.069  Sum_probs=95.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCC
Q 043144          124 SLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGK  201 (580)
Q Consensus       124 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~  201 (580)
                      .++..+.+.|.++-+.++....     +.++...-.++.+|...|++++|.+.|++.  ++..+......          
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~----------  881 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAV----------  881 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSS----------
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhh----------
Confidence            3445556666666665544332     234444445667777777777777777776  22221111000          


Q ss_pred             hhHHHHHHHHHHhCC--CCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHhcCCHHHH
Q 043144          202 LNLAMEVLHKQLEKE--CYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDV----VTYNVLVNGICKEGRLDEA  275 (580)
Q Consensus       202 ~~~A~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A  275 (580)
                      ...    +..+....  ...-..-|.-++..+-+.+.++.+.+.-....+...+.+.    ..|..+...+...|++++|
T Consensus       882 ~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~A  957 (1139)
T 4fhn_B          882 LRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAA  957 (1139)
T ss_dssp             HHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGG
T ss_pred             hcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHH
Confidence            000    00111110  0112234566777788888888888877776654222121    2577788888888999998


Q ss_pred             HHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 043144          276 IKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAER  312 (580)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~  312 (580)
                      ...+-.+.....  -......++..+|..|..+.-..
T Consensus       958 y~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~  992 (1139)
T 4fhn_B          958 HVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLN  992 (1139)
T ss_dssp             GHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             HHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhC
Confidence            888888776533  34566777777777777655443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.03  E-value=6.9  Score=37.89  Aligned_cols=185  Identities=11%  Similarity=0.109  Sum_probs=101.9

Q ss_pred             CChHHHHHHHHHHHhC-----CCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcC
Q 043144           98 GELEEGFKFLESMVYH-----GDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC----RLG  168 (580)
Q Consensus        98 g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g  168 (580)
                      |++++|++.+-.+.+.     ...........++..|...|+++...+.+..+.+.... -......+++.+.    ...
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCC
Confidence            6788888877555432     12334566788899999999999988888776654312 2222333443332    223


Q ss_pred             Chh--HHHHHHHHc-CCCCC--------cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHH
Q 043144          169 EID--NALQVLERM-SVAPD--------VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPD-----VITYTILIEATC  232 (580)
Q Consensus       169 ~~~--~A~~~~~~~-~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~  232 (580)
                      ..+  .-..+.+.. .+...        ......|...+...|++.+|..++..+...-...+     +..+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            222  222333333 11111        11234566777777888887777777653211111     234555566677


Q ss_pred             hcCCHhHHHHHHHHHHH----cCCCCC--HhHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 043144          233 KESGVGQAMKLLDEMRN----KGCIPD--VVTYNVLVNGICKEGRLDEAIKFLNDMP  283 (580)
Q Consensus       233 ~~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~  283 (580)
                      ..+++.+|..++..+..    ....|+  ...+...+..+...+++.+|...|.++.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~  245 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIY  245 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            77777777777766532    111111  1234555566666677777666666553

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.80  E-value=2.3  Score=43.93  Aligned_cols=54  Identities=11%  Similarity=-0.058  Sum_probs=47.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          508 MLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       508 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      +..|...|+++-|+++.++++.. .|.+-.+|..|+.+|...|+++.|+-.++.+
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            45566789999999999999987 3777899999999999999999999888876

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.07  E-value=0.83  Score=43.51  Aligned_cols=74  Identities=8%  Similarity=0.025  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVT-----RSCKPTEATYTIL  542 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l  542 (580)
                      ....++.++...|+++++...+..+....+- +...|..++.+|.+.|+..+|++.|++..+     .|+.|.+.+-...
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~-~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            4455666677778888887777777654433 666777788888888888888887777643     3677776654433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=91.22  E-value=2.4  Score=32.49  Aligned_cols=69  Identities=10%  Similarity=0.060  Sum_probs=45.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          462 LKPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       462 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      -.|+..+--.+..++.+..+   ..+++.+++++.+.++.-....+-.|+-++.+.|++++|++..+.+++.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            35566665566666666554   4467777777765443223455556667788888888888888888764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=90.78  E-value=2  Score=40.87  Aligned_cols=72  Identities=11%  Similarity=0.236  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-----hCCCCCCHHH
Q 043144          431 LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLE-----RLGVRPNVIT  503 (580)
Q Consensus       431 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~  503 (580)
                      ......++..+...|++++|...+..+.... +-+...+..++.++.+.|+..+|++.|+...     +.|+.|...+
T Consensus       171 ~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          171 VLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            4455667777888999999999999888764 5578899999999999999999999998874     4688887655

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.78  E-value=4.8  Score=31.33  Aligned_cols=68  Identities=16%  Similarity=0.137  Sum_probs=32.8

Q ss_pred             CCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          499 PNVITYNSIMLGLCKARQT---YRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      |+..+-..+++++.++.+.   .+++.+++++.+.+-.........|+-++.+.|++++|+++.+.+++..
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e  107 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  107 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence            4444444455555554432   3455555555543211123344445555555555555555555555543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=90.36  E-value=10  Score=34.40  Aligned_cols=39  Identities=10%  Similarity=0.308  Sum_probs=24.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHH
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVME  143 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  143 (580)
                      -++..+..|++=||.+.++....+               |.+++++++|++++.
T Consensus        19 rl~~~I~~G~yYEAhQ~~Rtl~~R---------------y~~~~~~~eAidlL~   57 (312)
T 2wpv_A           19 RFENKIKAGDYYEAHQTLRTIANR---------------YVRSKSYEHAIELIS   57 (312)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH---------------HHHTTCHHHHHHHHH
T ss_pred             HHHHHhhccChHHHHHHHHHHHHH---------------HHHhcCHHHHHHHHH
Confidence            345566667777776666655333               667777777777654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=89.54  E-value=2.2  Score=34.29  Aligned_cols=113  Identities=12%  Similarity=0.055  Sum_probs=59.8

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCCHHHHHH
Q 043144          437 VIDGLSKVGKTEQAMKLLEEMRTK-GLKPD-------TITYSSLVGGLSREGKVDEAIKLFHDLERLG--VRPNVITYNS  506 (580)
Q Consensus       437 l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~  506 (580)
                      -+..+...|.++.|.-+.+.+... +..|+       ..++..+.+++...|++.+|...|+++.+..  +.-+......
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            355566677777777666664432 11222       1245566667777777777777777764211  1101111111


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 043144          507 IMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQL  562 (580)
Q Consensus       507 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  562 (580)
                      +.    .......         ......+.+.-..+..+|.+.|++++|+.+++.+
T Consensus       106 ~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A          106 TG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             cc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence            10    0000000         0112344566677889999999999999998875

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.18  E-value=6.1  Score=43.75  Aligned_cols=151  Identities=13%  Similarity=0.089  Sum_probs=96.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHc------------------
Q 043144          189 YNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNK------------------  250 (580)
Q Consensus       189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------------------  250 (580)
                      ...++..+.+.+.++.+.++....     +.+......+..++...|++++|...|.+....                  
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            344556666667776666544332     223344445566677777777777777654210                  


Q ss_pred             --C--CCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 043144          251 --G--CIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNV----ITHNIILRSMCSTGRWMDAERLLAEMVLKGC  322 (580)
Q Consensus       251 --~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  322 (580)
                        .  ...-..-|..++..+.+.+.++.+.++-....+...+.+.    ..|..+...+...|++++|...+-.+.... 
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~-  968 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP-  968 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS-
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH-
Confidence              0  0111234677888999999999998887766543212221    257888999999999999999988877653 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHH
Q 043144          323 SPSVVTFNILINFLCRKGLLGRAI  346 (580)
Q Consensus       323 ~~~~~~~~~l~~~~~~~g~~~~a~  346 (580)
                       .-......|+...+..|..+.-.
T Consensus       969 -~r~~cLr~LV~~lce~~~~~~L~  991 (1139)
T 4fhn_B          969 -LKKSCLLDFVNQLTKQGKINQLL  991 (1139)
T ss_dssp             -SCHHHHHHHHHHHHHHCCHHHHH
T ss_pred             -HHHHHHHHHHHHHHhCCChhhhh
Confidence             33456777777777777665443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=88.43  E-value=4.3  Score=35.63  Aligned_cols=115  Identities=16%  Similarity=0.081  Sum_probs=78.0

Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhcCC
Q 043144          439 DGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR--PNVITYNSIMLGLCKARQ  516 (580)
Q Consensus       439 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~  516 (580)
                      ....+.|++++|+.....-++.. +-|...-..++..++-.|++++|.+-++...+..+.  |-...|..+|.+-     
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE-----   78 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-----   78 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence            44668899999999999888875 557888888999999999999999999998876433  1122344444331     


Q ss_pred             HHHHHHHHHHHH-HcCC-----CCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhC
Q 043144          517 TYRAIDILADMV-TRSC-----KPTEATYTILIEGI--AYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       517 ~~~A~~~~~~~~-~~~~-----~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~  565 (580)
                            .++.-+ .-+-     .....-...++.+.  ...|+.++|.++-.++.+.
T Consensus        79 ------~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           79 ------QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             ------HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ------HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence                  122222 1111     12233445555555  4579999999999998765

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=87.51  E-value=2.7  Score=30.26  Aligned_cols=63  Identities=16%  Similarity=0.186  Sum_probs=44.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      +.=+..+-+..+.....-|++.+..+.+.+|.+.+++..|..+++-...+. .+...+|..++.
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence            445667777777777778888888888888888888888888888777653 333445655543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.38  E-value=22  Score=34.37  Aligned_cols=95  Identities=14%  Similarity=0.111  Sum_probs=53.6

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCC--HHH
Q 043144          435 NTVIDGLSKVGKTEQAMKLLEEMRTK--GLKPD---TITYSSLVGGLSREGKVDEAIKLFHDLE----RLGVRPN--VIT  503 (580)
Q Consensus       435 ~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~--~~~  503 (580)
                      ..+...|...|++.+|..++.++...  +..+.   ...+...+..|...+++.+|..++.++.    .....|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            34556666677777777777666432  21111   2344555566677777777777776653    1111222  234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 043144          504 YNSIMLGLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       504 ~~~l~~~~~~~g~~~~A~~~~~~~~~  529 (580)
                      +...+..+...++|.+|...|.++.+
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            45566666667777777766666553

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=85.80  E-value=21  Score=32.63  Aligned_cols=81  Identities=11%  Similarity=-0.019  Sum_probs=44.8

Q ss_pred             CCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHH
Q 043144          254 PDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILI  333 (580)
Q Consensus       254 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  333 (580)
                      -|+.....+...|.+.+++.+|...|-  .  |-.+....+..++.-+...+...+              .|...-.+++
T Consensus       134 Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaVL  195 (336)
T 3lpz_A          134 GDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAVL  195 (336)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHHH
Confidence            367777888888999999988888773  2  212333555555444333332111              1212222222


Q ss_pred             HHHHhcCCHHHHHHHHHHhh
Q 043144          334 NFLCRKGLLGRAIDILEKMP  353 (580)
Q Consensus       334 ~~~~~~g~~~~a~~~~~~~~  353 (580)
                       .|.-.+++..|...++...
T Consensus       196 -~yL~l~n~~~A~~~~~~f~  214 (336)
T 3lpz_A          196 -PYLLVANVRAANTAYRIFT  214 (336)
T ss_dssp             -HHHHTTCHHHHHHHHHHHH
T ss_pred             -HHHHhCCHHHHHHHHHHHH
Confidence             3445677777777665544

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=83.59  E-value=30  Score=32.61  Aligned_cols=130  Identities=6%  Similarity=-0.047  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCC---ChhhHHHHHHHHHhc-CCHHHHHHHHHHhhhCCCCCCHhhH---
Q 043144          293 THNIILRSMCSTGRWMDAERLLAEMVLK-GCSP---SVVTFNILINFLCRK-GLLGRAIDILEKMPKHGCTPNSLSY---  364 (580)
Q Consensus       293 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~---  364 (580)
                      ....+...|.+.|+.++..+++...... +..+   .......+++.+... +..+.-.+++.+..+.... +..+|   
T Consensus        21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr~   99 (394)
T 3txn_A           21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLRQ   99 (394)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence            4445566666666666666666554321 0001   112233444444432 2233333333333321000 11122   


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 043144          365 ---NPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-----IVTYNTLLTALCKDGKVDVAVEILNQLS  423 (580)
Q Consensus       365 ---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~~  423 (580)
                         ..++..|...|++.+|..++.++.+.--..|     ..++..-+..|...+++.++...+....
T Consensus       100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~  166 (394)
T 3txn_A          100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSAR  166 (394)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence               1344555555555555555555544210101     1133344444555555555555555443

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.25  E-value=13  Score=26.84  Aligned_cols=61  Identities=11%  Similarity=0.174  Sum_probs=47.0

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCHHHHHHHH
Q 043144          446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLER-LGVRPNVITYNSIM  508 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~  508 (580)
                      +.-+..+-++.+....+.|++.+....+.+|.+.+++..|.++|+.+.. .+.  ...+|..++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~l   86 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVI   86 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHH
Confidence            4557777778877778889999999999999999999999999998863 332  234565554

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=80.89  E-value=38  Score=31.92  Aligned_cols=93  Identities=12%  Similarity=-0.068  Sum_probs=48.9

Q ss_pred             HHHHHHHhcCCHhHHHHHHHHHHHcCCCCC-----HhHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCCCHHHHHHH-
Q 043144          226 ILIEATCKESGVGQAMKLLDEMRNKGCIPD-----VVTYNVLVNGICKEGRLDEAIKFLNDMPSY--GCQPNVITHNII-  297 (580)
Q Consensus       226 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~l-  297 (580)
                      -++..|...|++.+|.+++..+.+.=-..|     ..++-.-+..|...+++.++...+......  .+.+++.....+ 
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            456677777777777777766654210111     223444556666777777777777665431  111222221111 


Q ss_pred             ---HHHHH-hcCChHHHHHHHHHHH
Q 043144          298 ---LRSMC-STGRWMDAERLLAEMV  318 (580)
Q Consensus       298 ---l~~~~-~~~~~~~a~~~~~~~~  318 (580)
                         ...+. ..++|..|...|-+..
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHH
Confidence               11234 5677777766665543

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.65  E-value=11  Score=36.39  Aligned_cols=61  Identities=11%  Similarity=0.036  Sum_probs=29.2

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC--CChhhHHHHHHHHHhcCCHhHHHHHHHHHH
Q 043144          188 TYNTILRTLCDSGKLNLAMEVLHKQLEKECY--PDVITYTILIEATCKESGVGQAMKLLDEMR  248 (580)
Q Consensus       188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  248 (580)
                      +...++..|.+.|+++.|.+.|.++...-..  .-...+..+++.+...+++..+...+.++.
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~  195 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN  195 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            3444555555555555555555554432111  123344445555555555555555555543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=80.55  E-value=7  Score=29.91  Aligned_cols=63  Identities=16%  Similarity=0.186  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIE  544 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  544 (580)
                      +.=+..+-+..+...++-|++.+..+.+.+|.+.+++..|..+++-...+. .+...+|..++.
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence            444666777777777778888888888888888888888888888877653 444555665543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=80.36  E-value=35  Score=31.18  Aligned_cols=83  Identities=10%  Similarity=-0.068  Sum_probs=48.4

Q ss_pred             CCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHH
Q 043144          218 YPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNII  297 (580)
Q Consensus       218 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  297 (580)
                      ..|......+...|.+.+++.+|..-|-  .  |..+++..+..++.-+...+...+              ++.....++
T Consensus       133 ~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e--------------~dlfiaRaV  194 (336)
T 3lpz_A          133 AGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEWYKQDESHT--------------APLYCARAV  194 (336)
T ss_dssp             TCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGG--------------HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHHHHhcCCcc--------------HHHHHHHHH
Confidence            3467777888899999999999888773  2  223334566544444433332111              122222222


Q ss_pred             HHHHHhcCChHHHHHHHHHHHH
Q 043144          298 LRSMCSTGRWMDAERLLAEMVL  319 (580)
Q Consensus       298 l~~~~~~~~~~~a~~~~~~~~~  319 (580)
                       -.|...++...|..+++...+
T Consensus       195 -L~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          195 -LPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             -HHHHHTTCHHHHHHHHHHHHH
T ss_pred             -HHHHHhCCHHHHHHHHHHHHH
Confidence             235667788888887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	580
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.68
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.33
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.32
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.29
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.28
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.23
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.22
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.22
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.17
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.15
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.84
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.79
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.77
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.77
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.75
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.75
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.74
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.64
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.61
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.59
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.55
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.52
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.48
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.42
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.37
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.35
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.33
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.32
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.23
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.17
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.14
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.13
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.08
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.02
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.98
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.95
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.89
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.88
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.84
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.78
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.76
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.49
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.3
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.27
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.22
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.14
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.81
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	95.57
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.46
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.35
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	94.36
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.12
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.42
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.06
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	80.68

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-23  Score=202.77  Aligned_cols=382  Identities=13%  Similarity=0.066  Sum_probs=213.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-C-CCCCcchHHHHHHHHHhcCCh
Q 043144          125 LIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-S-VAPDVVTYNTILRTLCDSGKL  202 (580)
Q Consensus       125 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~  202 (580)
                      ++..+.+.|++++|.+.|+++.+.. |.++..+..++.+|.+.|++++|+..|+++ . .|.+..+|..++.+|.+.|++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence            3445566666666666666666554 445556666666666666666666666655 1 222344555555555555555


Q ss_pred             hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHh
Q 043144          203 NLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDM  282 (580)
Q Consensus       203 ~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  282 (580)
                      ++|+..+........ .+..............+....+...........                               
T Consensus        84 ~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------  131 (388)
T d1w3ba_          84 QEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-------------------------------  131 (388)
T ss_dssp             HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------------------
T ss_pred             ccccccccccccccc-ccccccccccccccccccccccccccccccccc-------------------------------
Confidence            555555555554321 122222222223333333333333333222221                               


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHh
Q 043144          283 PSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSL  362 (580)
Q Consensus       283 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  362 (580)
                           .................+....+...+....... +.+...+..+...+...|++++|...+++..+..+. +..
T Consensus       132 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~  204 (388)
T d1w3ba_         132 -----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD  204 (388)
T ss_dssp             -----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred             -----cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHH
Confidence                 1222222333333444444444444444444332 223344555555555556666666666555554322 444


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          363 SYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLS  442 (580)
Q Consensus       363 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  442 (580)
                      .+..+...+...|++++|+..+++....+. .+...+..+...+.+.|++++|...|+++.+.. +.+...|..+...+.
T Consensus       205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  282 (388)
T d1w3ba_         205 AYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            555566666666666666666666555432 244455556666666666666666666666544 233556666666777


Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 043144          443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAID  522 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  522 (580)
                      ..|++++|.+.++...... +.+...+..+...+...|++++|+..|+++.+..+. +..++..++.+|...|++++|++
T Consensus       283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~  360 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALM  360 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHH
T ss_pred             HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777666543 445666667777777777777777777777665433 56667777777777777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144          523 ILADMVTRSCKPTEATYTILIEGIAYEGL  551 (580)
Q Consensus       523 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  551 (580)
                      .++++++.. |.+..+|..++.+|.+.||
T Consensus       361 ~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         361 HYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            777777542 4456677777777776664

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.9e-23  Score=202.37  Aligned_cols=382  Identities=12%  Similarity=0.054  Sum_probs=248.6

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144           89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLG  168 (580)
Q Consensus        89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  168 (580)
                      .+...+.+.|++++|++.|+++++. .|.+..++..++.+|.+.|++++|...|+++.+.. |.+..+|..++.+|.+.|
T Consensus         4 ~la~~~~~~G~~~~A~~~~~~~l~~-~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           4 ELAHREYQAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             THHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc
Confidence            4677889999999999999999887 45678899999999999999999999999999876 667889999999999999


Q ss_pred             ChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHH
Q 043144          169 EIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDE  246 (580)
Q Consensus       169 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  246 (580)
                      ++++|+..+...  ..+.+...+..........+....+........... .................+....+...+..
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence            999999999988  334455556666666777777777777666665543 23444555566667777888888888877


Q ss_pred             HHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh
Q 043144          247 MRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV  326 (580)
Q Consensus       247 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  326 (580)
                      ..... +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...+......+ +.+.
T Consensus       161 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  237 (388)
T d1w3ba_         161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA  237 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred             hhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence            77653 2256667777777778888888888877766543 3345566666666666777777776666666543 2344


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 043144          327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTAL  406 (580)
Q Consensus       327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~  406 (580)
                      ..+..+...+.+.|++++|...|+++.+..+. +..++..+...+...|++++|+..++.....                
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----------------  300 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRL----------------  300 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc----------------
Confidence            45555556666666666666666655554322 3444555555555555555555555554443                


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 043144          407 CKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAI  486 (580)
Q Consensus       407 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  486 (580)
                                         . +.+...+..+...+...|++++|+..|++.++.. +-+..++..+..++...|++++|.
T Consensus       301 -------------------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         301 -------------------C-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             -------------------C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred             -------------------C-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence                               2 2233344444444444555555555555444332 123344455555555555555555


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144          487 KLFHDLERLGVRPNVITYNSIMLGLCKAR  515 (580)
Q Consensus       487 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  515 (580)
                      ..|+++.+..+. +...|..++.+|.+.|
T Consensus       360 ~~~~~al~l~P~-~~~a~~~lg~~~~~~~  387 (388)
T d1w3ba_         360 MHYKEAIRISPT-FADAYSNMGNTLKEMQ  387 (388)
T ss_dssp             HHHHHHHTTCTT-CHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence            555555544322 3445555555554444

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.5e-14  Score=133.86  Aligned_cols=273  Identities=10%  Similarity=0.012  Sum_probs=181.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC
Q 043144          261 VLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKG  340 (580)
Q Consensus       261 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  340 (580)
                      .....+.+.|++++|+..|+++.+.. +.+..+|..+..++...|++++|...|.++++.. +.+...+..++..|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            45566677777788887777777654 4456677777777777777777777777777653 335566777777777777


Q ss_pred             CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 043144          341 LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN  420 (580)
Q Consensus       341 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  420 (580)
                      ++++|.+.++++.....  +.............                   ..+.......+..+...+.+.+|...+.
T Consensus       102 ~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYTP--AYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTST--TTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhcc--chHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            77777777777666422  11110000000000                   0000011111223334456677777777


Q ss_pred             HHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 043144          421 QLSNKHC-SPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP  499 (580)
Q Consensus       421 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  499 (580)
                      +..+... .++...+..+...+...|++++|...|++..... +-+...|..+...+...|++++|.+.|+++.+..+. 
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-  238 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-  238 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-
Confidence            7665442 2456677788888889999999999999887754 335778888889999999999999999998876544 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 043144          500 NVITYNSIMLGLCKARQTYRAIDILADMVTR----------SCKPTEATYTILIEGIAYEGLAKEALDL  558 (580)
Q Consensus       500 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~  558 (580)
                      +..+|..++.+|...|++++|++.|+++++.          ........|..+..++...|+.+.+...
T Consensus       239 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         239 YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6778888999999999999999999988753          1112234666677777777777655433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=1.8e-14  Score=134.86  Aligned_cols=229  Identities=12%  Similarity=0.035  Sum_probs=150.0

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      .......+.+.|++++|+..|+++++. .|.+..+|..++.++...|++++|...|.+..+.. |.+...|..++..|..
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~   99 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTN   99 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccc
Confidence            346677899999999999999999987 56678899999999999999999999999999876 6678899999999999


Q ss_pred             cCChhHHHHHHHHc-CCCCCcch----------------HHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CChhhHHHHH
Q 043144          167 LGEIDNALQVLERM-SVAPDVVT----------------YNTILRTLCDSGKLNLAMEVLHKQLEKECY-PDVITYTILI  228 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~~~~~~~----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~li  228 (580)
                      .|++++|.+.++++ ...|+...                ....+..+...+.+.+|.+.|.+++..... .+...+..+.
T Consensus       100 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~  179 (323)
T d1fcha_         100 ESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLG  179 (323)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHH
T ss_pred             cccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhH
Confidence            99999999999987 22232111                011112223334455555555555543211 2334455555


Q ss_pred             HHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChH
Q 043144          229 EATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWM  308 (580)
Q Consensus       229 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~  308 (580)
                      ..+...|++++|+..|+....... .+...|..+..+|...|++++|++.|++..+.. +-+..+|..+..+|...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~  257 (323)
T d1fcha_         180 VLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHR  257 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHH
Confidence            555556666666666665555432 134555555556666666666666665555432 234445555555566666666


Q ss_pred             HHHHHHHHHHH
Q 043144          309 DAERLLAEMVL  319 (580)
Q Consensus       309 ~a~~~~~~~~~  319 (580)
                      +|+..|++.++
T Consensus       258 ~A~~~~~~al~  268 (323)
T d1fcha_         258 EAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666555554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=4.1e-10  Score=103.57  Aligned_cols=211  Identities=10%  Similarity=0.016  Sum_probs=103.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhc
Q 043144          296 IILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINFLCRKG-LLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKE  374 (580)
Q Consensus       296 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  374 (580)
                      .+...+.+.+.+++|+.+++.+++.. |.+...|+....++...| ++++|+..+++.++..+. +..+|..+...+.+.
T Consensus        48 ~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~~l  125 (315)
T d2h6fa1          48 YFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVEWL  125 (315)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHHhh
Confidence            33334444455555555555555542 233444455554444443 355555555555544332 445555555555555


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC------HH
Q 043144          375 KKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGK------TE  448 (580)
Q Consensus       375 ~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~  448 (580)
                      |++++|+..++++++..+. +...|..+..++.+.|++++|+..++.+.+.+ +.+...|+.+...+.+.+.      ++
T Consensus       126 ~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~~~~~  203 (315)
T d2h6fa1         126 RDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLE  203 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHH
T ss_pred             ccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchhhhhH
Confidence            5555555555555554222 34455555555555555555555555555544 2234444444444443333      45


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHH
Q 043144          449 QAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRP-NVITYNSIMLGLC  512 (580)
Q Consensus       449 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~  512 (580)
                      +|+..+.+.++.. +.+...|..+...+... ..+++.+.++...+..+.+ +...+..++..|.
T Consensus       204 ~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         204 REVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence            6666666666543 23455555555444333 3455666666555433322 3344444554443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=2.2e-10  Score=105.39  Aligned_cols=232  Identities=9%  Similarity=0.077  Sum_probs=182.5

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 043144          327 VTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEK-KMDRAIEYLEIMVSRGCYPDIVTYNTLLTA  405 (580)
Q Consensus       327 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~li~~  405 (580)
                      ..++.+...+.+.+..++|+++++++++.++. +...|+....++...| ++++|+..++++++..+. +..+|..+...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            45667777888899999999999999998655 7778888888888876 599999999999887544 67799999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC----
Q 043144          406 LCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK----  481 (580)
Q Consensus       406 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~----  481 (580)
                      +.+.|++++|+..++.+.+.. +.+...|..+...+.+.|++++|+..++++++.+ +-+...|+.+...+.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            999999999999999999876 4568899999999999999999999999999875 3467788887777766655    


Q ss_pred             --HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhc--CC-----
Q 043144          482 --VDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSC-KPTEATYTILIEGIAYE--GL-----  551 (580)
Q Consensus       482 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--g~-----  551 (580)
                        +++|+..+.++.+..+. +...|..+...+.. ...+++.+.++...+... ..+...+..++.+|...  ++     
T Consensus       200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence              68899999999887655 78888888776554 446788888888876432 23455667777777432  33     


Q ss_pred             --HHHHHHHHHHHHh
Q 043144          552 --AKEALDLLNQLCS  564 (580)
Q Consensus       552 --~~~A~~~~~~~~~  564 (580)
                        +++|.++++.+..
T Consensus       278 ~~~~ka~~l~~~l~~  292 (315)
T d2h6fa1         278 DILNKALELCEILAK  292 (315)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence              4455555555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=6.8e-10  Score=104.40  Aligned_cols=265  Identities=14%  Similarity=0.038  Sum_probs=177.8

Q ss_pred             HHHHHHHcCChHHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC-----CCCHHHHHHH
Q 043144           90 HLRRLVRNGELEEGFKFLESMVYHGDIPD----IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGA-----VPDVITYNVL  160 (580)
Q Consensus        90 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l  160 (580)
                      ....+...|++++|++++++++......+    ..++..+..+|...|++++|...|+.......     +.....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            35677889999999999999988632222    24567788889999999999999998765321     1123455667


Q ss_pred             HHHHHhcCChhHHHHHHHHc-------CCCCC---cchHHHHHHHHHhcCChhHHHHHHHHHHhCCCC----CChhhHHH
Q 043144          161 ISGYCRLGEIDNALQVLERM-------SVAPD---VVTYNTILRTLCDSGKLNLAMEVLHKQLEKECY----PDVITYTI  226 (580)
Q Consensus       161 ~~~~~~~g~~~~A~~~~~~~-------~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~  226 (580)
                      ...+...|++..|...+.+.       ..+..   ...+..+...+...|+++.+...+.........    .....+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  177 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM  177 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence            77888899999988888765       11111   224556777888889999998888887764322    12334455


Q ss_pred             HHHHHHhcCCHhHHHHHHHHHHHcC--CCC----CHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---CCHHHHHHH
Q 043144          227 LIEATCKESGVGQAMKLLDEMRNKG--CIP----DVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQ---PNVITHNII  297 (580)
Q Consensus       227 li~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l  297 (580)
                      ....+...+++..+...+.......  ...    ....+..+...+...|++++|...+.+.......   .....+..+
T Consensus       178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l  257 (366)
T d1hz4a_         178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI  257 (366)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            5666777888888888777665421  111    1224555666777888888888888876653221   223445566


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHc----CCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 043144          298 LRSMCSTGRWMDAERLLAEMVLK----GCSPS-VVTFNILINFLCRKGLLGRAIDILEKMPK  354 (580)
Q Consensus       298 l~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  354 (580)
                      ...+...|++++|...++.+...    +..|+ ...+..+..+|...|++++|.+.+++.++
T Consensus       258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77788888888888888776532    22222 34566677777888888888887776654

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.2e-09  Score=100.41  Aligned_cols=187  Identities=11%  Similarity=0.007  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 043144          377 MDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEE  456 (580)
Q Consensus       377 ~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  456 (580)
                      .++|..+|++.++.....+...+...+..+...|+++.|..+|+.+.+.........|...+..+.+.|+++.|.++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45566666666654333344456666666666677777777776666544223344566666666666777777777777


Q ss_pred             HHHCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC
Q 043144          457 MRTKGLKPDTITYSSLVGG-LSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRS-CKP  534 (580)
Q Consensus       457 m~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~  534 (580)
                      +++.+ +.+...|...+.. +...|+.+.|..+|+.+.+..+. +...|...+..+...|+.++|+.+|++.++.. ..|
T Consensus       160 al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            66553 2233333333322 23456677777777776654322 56666677777777777777777777766542 222


Q ss_pred             C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 043144          535 T--EATYTILIEGIAYEGLAKEALDLLNQLCSR  565 (580)
Q Consensus       535 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  565 (580)
                      +  ...|...+..-...|+.+.+.++.+++.+.
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2  345666666556667777777777766554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.25  E-value=4e-09  Score=98.92  Aligned_cols=273  Identities=12%  Similarity=0.030  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-CC----hhh
Q 043144          258 TYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPN----VITHNIILRSMCSTGRWMDAERLLAEMVLKGCS-PS----VVT  328 (580)
Q Consensus       258 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~  328 (580)
                      ........+...|++++|+.++++..+.....+    ...+..+...+...|++++|...+++..+.... ++    ...
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            344456677889999999999998876531111    235666778888899999999999888754211 11    234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCCC---HhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHH
Q 043144          329 FNILINFLCRKGLLGRAIDILEKMPKH----GCTPN---SLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGC----YPDIV  397 (580)
Q Consensus       329 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~  397 (580)
                      +..+...+...|++..+...+......    .....   ...+..+...+...|+++.+...+........    .....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            556667788889999998888776542    11111   12445566778888899999888888765322    22334


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---CCHHH
Q 043144          398 TYNTLLTALCKDGKVDVAVEILNQLSNKH--CSPV----LITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLK---PDTIT  468 (580)
Q Consensus       398 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p~~~~  468 (580)
                      .+......+...++...+...+.......  ....    ...+......+...|++++|...++........   .....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            56666677788888888888877654321  1111    233555666677888888888888876654222   12345


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          469 YSSLVGGLSREGKVDEAIKLFHDLER----LGVRPN-VITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       469 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      +..+..++...|++++|...++++..    .+..|+ ...+..+..+|...|++++|.+.+++.++.
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            56677788888888888888887752    233332 456777888888888888888888888753

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.23  E-value=2.9e-09  Score=97.69  Aligned_cols=189  Identities=12%  Similarity=0.001  Sum_probs=145.7

Q ss_pred             CCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 043144          340 GLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEIL  419 (580)
Q Consensus       340 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  419 (580)
                      +..++|..+|++.++...+.+...|...+......|+++.|..+|+++++........+|...+..+.+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34577888888888754455667788888888889999999999999887644433457888888888999999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC-
Q 043144          420 NQLSNKHCSPVLITYNTVIDG-LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGV-  497 (580)
Q Consensus       420 ~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-  497 (580)
                      +.+.+... .+...|...+.. +...|+.+.|..+|+.+.... +.+...|...+..+...|+++.|..+|++..+..+ 
T Consensus       158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            99887662 334444444433 345688999999999998763 45678889999999999999999999999876543 


Q ss_pred             CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          498 RP--NVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       498 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .|  ....|...+..-...|+.+.+.++++++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            33  3567888888778889999999999988764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=8.8e-11  Score=109.65  Aligned_cols=263  Identities=9%  Similarity=-0.017  Sum_probs=131.4

Q ss_pred             CHhHHHHHHHHHHHcCCCCCHhHHHHHHHH----------HHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcC
Q 043144          236 GVGQAMKLLDEMRNKGCIPDVVTYNVLVNG----------ICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTG  305 (580)
Q Consensus       236 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~  305 (580)
                      ..++|+.+++.+++..+. +...|+..-..          +...|.+++|+.+++...+.+ +.+...|..+..++...+
T Consensus        44 ~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred             ccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhc
Confidence            346666677666655321 33344332222          222334566666666665543 345555555555555444


Q ss_pred             --ChHHHHHHHHHHHHcCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 043144          306 --RWMDAERLLAEMVLKGCSPSVVTFN-ILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIE  382 (580)
Q Consensus       306 --~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  382 (580)
                        ++++|...+..+++.. +.+...+. .....+...+..++|+..++.+++.++. +...|..+...+.+.|++++|..
T Consensus       122 ~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence              3566666666666553 22333333 3334555566667777766666665443 55666666666666666665554


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC
Q 043144          383 YLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGL  462 (580)
Q Consensus       383 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  462 (580)
                      .+......  .|+.   ..+...+...+..+++...+....... +++...+..+...+...|++++|...+.+....+ 
T Consensus       200 ~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-  272 (334)
T d1dcea1         200 QGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPEN-  272 (334)
T ss_dssp             CCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC-
T ss_pred             HHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC-
Confidence            44333221  1111   112222334445555555555554433 2223334444444555555566666655554432 


Q ss_pred             CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144          463 KPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLG  510 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  510 (580)
                      +.+..++..+..++...|++++|.+.++++.+..|. +...|..|...
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~-~~~y~~~L~~~  319 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM-RAAYLDDLRSK  319 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG-GHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc-cHHHHHHHHHH
Confidence            113344555555556666666666666666554321 23344444333

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=6.6e-11  Score=110.54  Aligned_cols=226  Identities=8%  Similarity=-0.013  Sum_probs=122.0

Q ss_pred             ChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCC--hhHHHHHHHHHHhCCCCCChhhHH-HHHHHHHhcCCHhHHHHH
Q 043144          169 EIDNALQVLERM--SVAPDVVTYNTILRTLCDSGK--LNLAMEVLHKQLEKECYPDVITYT-ILIEATCKESGVGQAMKL  243 (580)
Q Consensus       169 ~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~  243 (580)
                      ++++|+.+++++  ..|.+...|..++.++...++  +++|+..+.+++.... ++...+. .....+...+.+++|+..
T Consensus        88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~  166 (334)
T d1dcea1          88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAF  166 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHH
Confidence            345555555554  223344455555555555443  5566666666655431 2333332 233445556666666666


Q ss_pred             HHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 043144          244 LDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCS  323 (580)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  323 (580)
                      ++.+.+.++. +...|+.+..++...|++++|...+....+.  .|+   .......+...+..+++...+....... +
T Consensus       167 ~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~  239 (334)
T d1dcea1         167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-A  239 (334)
T ss_dssp             HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-C
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-c
Confidence            6666655422 5666666666666666666655544443322  111   1112223444555666666666665543 3


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 043144          324 PSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPD-IVTYNTL  402 (580)
Q Consensus       324 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l  402 (580)
                      ++...+..+...+...++.++|...+.+.....+. +...+..+...+...|++++|++.++++.+.  .|+ ...|..+
T Consensus       240 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L  316 (334)
T d1dcea1         240 EPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDL  316 (334)
T ss_dssp             CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHH
Confidence            34445555566666667777777777766655322 4455666667777777777777777777664  343 2344444


Q ss_pred             HHH
Q 043144          403 LTA  405 (580)
Q Consensus       403 i~~  405 (580)
                      ...
T Consensus       317 ~~~  319 (334)
T d1dcea1         317 RSK  319 (334)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.17  E-value=5.2e-10  Score=100.08  Aligned_cols=149  Identities=13%  Similarity=-0.015  Sum_probs=108.0

Q ss_pred             ChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 043144           99 ELEEGFKFLESMVYHGDIP---DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQ  175 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  175 (580)
                      +.+.|+..+++++......   ...++..++.+|.+.|++++|...|++.+... |.++.+|..++.+|.+.|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence            4566777777776652211   23567778888999999999999999998876 6788889999999999999999999


Q ss_pred             HHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144          176 VLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRN  249 (580)
Q Consensus       176 ~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  249 (580)
                      .|+++ .. |.+..++..++.++...|++++|.+.|++.++.. +.+......+...+.+.+..+.+..+......
T Consensus        93 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          93 AFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            99988 32 3456678888899999999999999999888765 22444444444445555555555555554444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=1.1e-09  Score=97.77  Aligned_cols=96  Identities=13%  Similarity=-0.059  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 043144          328 TFNILINFLCRKGLLGRAIDILEKMPKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALC  407 (580)
Q Consensus       328 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  407 (580)
                      ++..+..+|.+.|++++|+..|++.++..+. ++.+|..+..++.+.|++++|+..|+++++..+. +..++..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            3444455555555555555555555554322 4455555555555555555555555555543222 2334445555555


Q ss_pred             hcCChHHHHHHHHHHHhC
Q 043144          408 KDGKVDVAVEILNQLSNK  425 (580)
Q Consensus       408 ~~g~~~~A~~~~~~~~~~  425 (580)
                      ..|++++|...|+...+.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=8.1e-08  Score=80.53  Aligned_cols=121  Identities=10%  Similarity=0.032  Sum_probs=86.6

Q ss_pred             HHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCh
Q 043144           91 LRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEI  170 (580)
Q Consensus        91 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  170 (580)
                      ...+...|+++.|++.|.++    .+++..+|..++.+|...|++++|.+.|++.++.+ |.++..|..++.+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            56677888888888888764    34667778888888888888888888888888876 66777888888888888888


Q ss_pred             hHHHHHHHHc--CCCCC----------------cchHHHHHHHHHhcCChhHHHHHHHHHHhCC
Q 043144          171 DNALQVLERM--SVAPD----------------VVTYNTILRTLCDSGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       171 ~~A~~~~~~~--~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  216 (580)
                      ++|+..|++.  -.+.+                ..++..+..++.+.|++++|.+.+..+....
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            8888888775  11111                1234455666666666666666666665544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.8e-07  Score=78.36  Aligned_cols=123  Identities=13%  Similarity=-0.023  Sum_probs=71.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCH
Q 043144          403 LTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKV  482 (580)
Q Consensus       403 i~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~  482 (580)
                      ...+...|+++.|++.|+++.    +|+..+|..+..+|...|++++|++.|++.++.+ +-+...|..+..++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence            444556666666666665432    3455566666666666666666666666666653 23455666666666666666


Q ss_pred             HHHHHHHHHHHhCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          483 DEAIKLFHDLERLGVRPN---------------VITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       483 ~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      ++|...|++.........               ..++..+..++...|++++|.+.++.+...
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            666666666654321100               234445555666666666666666665543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.77  E-value=1.1e-07  Score=85.87  Aligned_cols=124  Identities=11%  Similarity=-0.015  Sum_probs=56.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHc----CCCCC----cchHHHH
Q 043144          126 IRGFCKVGKTRKATRVMEIVEDS----GAV-PDVITYNVLISGYCRLGEIDNALQVLERM----SVAPD----VVTYNTI  192 (580)
Q Consensus       126 ~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l  192 (580)
                      +..|...|++++|.+.|.+..+.    +-+ .-..+|..++.+|.+.|++++|++.+++.    ....+    ..++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            34455666666666666555432    101 11234555566666666666666665554    00001    2233344


Q ss_pred             HHHHHh-cCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcCCHhHHHHHHHHHHH
Q 043144          193 LRTLCD-SGKLNLAMEVLHKQLEK----ECYP-DVITYTILIEATCKESGVGQAMKLLDEMRN  249 (580)
Q Consensus       193 ~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~  249 (580)
                      +..|.. .|++++|++.|+++.+.    +.++ ...++..++..+...|++++|...|+++..
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            444422 35555555555554321    0000 012334444555555555555555555444

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.4e-07  Score=71.78  Aligned_cols=94  Identities=13%  Similarity=0.103  Sum_probs=57.2

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 043144          473 VGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLA  552 (580)
Q Consensus       473 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  552 (580)
                      ...+...|++++|+..|+++++..+. +...|..++.+|...|++++|+..++++++.. +.+...|..++.++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            44555666666666666666655433 55566666666666666666666666666553 55566666666666666666


Q ss_pred             HHHHHHHHHHHhCCCC
Q 043144          553 KEALDLLNQLCSRGVV  568 (580)
Q Consensus       553 ~~A~~~~~~~~~~g~~  568 (580)
                      ++|...+++.++..+.
T Consensus        88 ~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          88 EEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             HHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            6666666666655443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1.8e-07  Score=84.54  Aligned_cols=199  Identities=12%  Similarity=-0.003  Sum_probs=139.5

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CCCHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYH----GDIPD-IIPCTSLIRGFCKVGKTRKATRVMEIVEDS----GA-VPDVI  155 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~  155 (580)
                      .|......|...|++++|+..|.++...    +.+++ ..+|..++.+|.+.|++++|.+.+++..+.    +. .....
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            5788889999999999999999998653    22222 357888999999999999999999977653    11 11244


Q ss_pred             HHHHHHHHHHh-cCChhHHHHHHHHc-------CCCC-CcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh-----
Q 043144          156 TYNVLISGYCR-LGEIDNALQVLERM-------SVAP-DVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDV-----  221 (580)
Q Consensus       156 ~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----  221 (580)
                      ++..++..|.. .|++++|++.++++       +.++ -..++..++..+...|++++|++.|+++.........     
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~  198 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL  198 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH
Confidence            56667777754 69999999999886       1111 1345888999999999999999999998876432221     


Q ss_pred             -hhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCC-CC---HhHHHHHHHHHHh--cCCHHHHHHHHHHhhh
Q 043144          222 -ITYTILIEATCKESGVGQAMKLLDEMRNKGCI-PD---VVTYNVLVNGICK--EGRLDEAIKFLNDMPS  284 (580)
Q Consensus       222 -~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~  284 (580)
                       ..+...+..+...|+++.|...++...+..+. ++   ......++.++..  .+.+++|+..|+++.+
T Consensus       199 ~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence             12334555667788999999988888765311 11   2234556666544  2457788888876653

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.75  E-value=7.4e-06  Score=72.49  Aligned_cols=56  Identities=14%  Similarity=-0.008  Sum_probs=23.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHc
Q 043144          122 CTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNALQVLERM  180 (580)
Q Consensus       122 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~  180 (580)
                      +..+...+.+.||+++|.+.|++..+.|   +...+..|+.+|..    ..++..|...++..
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            3334444444444444444444444433   33333334444433    23344444444433

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1e-07  Score=72.48  Aligned_cols=96  Identities=11%  Similarity=0.071  Sum_probs=71.4

Q ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 043144           88 NNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRL  167 (580)
Q Consensus        88 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  167 (580)
                      ..-...+...|++++|+..|++++.. .|.+...|..+..+|.+.|++++|+..+....+.+ |.++..|..++.++...
T Consensus         7 ~~~g~~~~~~g~~~eAi~~~~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~   84 (117)
T d1elwa_           7 KEKGNKALSVGNIDDALQCYSEAIKL-DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL   84 (117)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc-CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHc
Confidence            34566777778888888888887776 45666777777888888888888888888877766 66777777778888888


Q ss_pred             CChhHHHHHHHHc-CCCCC
Q 043144          168 GEIDNALQVLERM-SVAPD  185 (580)
Q Consensus       168 g~~~~A~~~~~~~-~~~~~  185 (580)
                      |++++|+..|++. ...|+
T Consensus        85 ~~~~~A~~~~~~a~~~~p~  103 (117)
T d1elwa_          85 NRFEEAKRTYEEGLKHEAN  103 (117)
T ss_dssp             TCHHHHHHHHHHHHTTCTT
T ss_pred             cCHHHHHHHHHHHHHhCCC
Confidence            8888888887776 44444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.74  E-value=9.5e-06  Score=71.74  Aligned_cols=222  Identities=14%  Similarity=-0.001  Sum_probs=137.4

Q ss_pred             ccHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCCHHHHHHH
Q 043144           85 FESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK----VGKTRKATRVMEIVEDSGAVPDVITYNVL  160 (580)
Q Consensus        85 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  160 (580)
                      ..+..+...+...+++++|+++|+++.+.|   +...+..|...|..    ..+...|...+......+   ++.....+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l   76 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence            356778888889999999999999998876   66777788888876    668899999999988876   44555556


Q ss_pred             HHHHHh----cCChhHHHHHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 043144          161 ISGYCR----LGEIDNALQVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKECYPDVITYTILIEATC  232 (580)
Q Consensus       161 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~  232 (580)
                      +..+..    ..+.+.|...++.............+...+..    ......+...+......+   +...+..+...+.
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~  153 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYD  153 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhhhhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhhhc
Confidence            555543    45667788888776211223333334333332    334555666665555542   5555666666655


Q ss_pred             h----cCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh-
Q 043144          233 K----ESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICK----EGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS-  303 (580)
Q Consensus       233 ~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~-  303 (580)
                      .    ..+...+...++...+.|   +......+...|..    ..++++|+.+|.+..+.|   ++..+..|...|.. 
T Consensus       154 ~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         154 AGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred             cCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence            4    344555666666655543   45555555555544    345666666666665544   34444455554443 


Q ss_pred             ---cCChHHHHHHHHHHHHcC
Q 043144          304 ---TGRWMDAERLLAEMVLKG  321 (580)
Q Consensus       304 ---~~~~~~a~~~~~~~~~~~  321 (580)
                         ..+.++|.++|++..+.|
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCCccCHHHHHHHHHHHHHCc
Confidence               235556666666665554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.5e-07  Score=72.02  Aligned_cols=119  Identities=13%  Similarity=0.007  Sum_probs=85.0

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKAR  515 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  515 (580)
                      .....|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|+++.+..+. +...|..++.+|...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            34456678888888888888887764 346777888888888888888888888888876544 6778888888888888


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHH
Q 043144          516 QTYRAIDILADMVTRSCKPTEATYTILIEGI--AYEGLAKEALD  557 (580)
Q Consensus       516 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~  557 (580)
                      ++++|...+++..... +.+...+..+..+.  ...+.+++|..
T Consensus        93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888888763 44555555554443  33344555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=2.9e-07  Score=77.97  Aligned_cols=100  Identities=12%  Similarity=-0.045  Sum_probs=85.1

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          429 PVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       429 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      |+...+......|.+.|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|+++.+..+. +..+|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            666677777888999999999999999988764 457788889999999999999999999999876544 678888999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 043144          509 LGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       509 ~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .+|...|++++|+..|+++++.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988754

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=6.7e-07  Score=72.31  Aligned_cols=100  Identities=15%  Similarity=0.082  Sum_probs=89.0

Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 043144          470 SSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYE  549 (580)
Q Consensus       470 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  549 (580)
                      ......|.+.|++++|+..|+++.+..+. +...|..++.+|...|++++|+..|+++++.. +.+..+|..++.++...
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence            34466788999999999999999988765 88999999999999999999999999999874 77789999999999999


Q ss_pred             CCHHHHHHHHHHHHhCCCCCch
Q 043144          550 GLAKEALDLLNQLCSRGVVKKS  571 (580)
Q Consensus       550 g~~~~A~~~~~~~~~~g~~~~~  571 (580)
                      |++++|.+.+++.....+....
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~  113 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKD  113 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999998754433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.55  E-value=4.6e-07  Score=68.14  Aligned_cols=90  Identities=17%  Similarity=0.013  Sum_probs=65.5

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 043144          472 LVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGL  551 (580)
Q Consensus       472 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  551 (580)
                      +...+.+.|++++|...|+++....+. +...|..++.++.+.|++++|+..++++++.. |.+...|..++.+|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            455667777777777777777765544 67777777777777777777777777777663 5567777777777777777


Q ss_pred             HHHHHHHHHHHH
Q 043144          552 AKEALDLLNQLC  563 (580)
Q Consensus       552 ~~~A~~~~~~~~  563 (580)
                      +++|.+.+++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            777777777653

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.52  E-value=4.7e-07  Score=76.63  Aligned_cols=97  Identities=11%  Similarity=0.021  Sum_probs=62.4

Q ss_pred             CChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc-CCCC-CcchHHHHHH
Q 043144          117 PDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM-SVAP-DVVTYNTILR  194 (580)
Q Consensus       117 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~  194 (580)
                      |+...+...+..|.+.|++++|+..|++.+... |.++..|..++.+|.+.|++++|+..|+++ ...| +..+|..++.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            444455556666667777777777776666655 556666666677777777777777777666 3333 3456666666


Q ss_pred             HHHhcCChhHHHHHHHHHHh
Q 043144          195 TLCDSGKLNLAMEVLHKQLE  214 (580)
Q Consensus       195 ~~~~~g~~~~A~~~~~~~~~  214 (580)
                      +|.+.|++++|+..|+++++
T Consensus        81 ~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHH
Confidence            66667777777666666654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.48  E-value=4.9e-07  Score=67.96  Aligned_cols=92  Identities=13%  Similarity=0.000  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      +..+...+.+.|++++|+..|++++.. .|.+..+|..++.++.+.|++++|+..|++..... |.+..+|..++..|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQK-EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhccc-ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHH
Confidence            445677888889999999999998876 45567888888888899999999999998888876 6678888888888888


Q ss_pred             cCChhHHHHHHHHc
Q 043144          167 LGEIDNALQVLERM  180 (580)
Q Consensus       167 ~g~~~~A~~~~~~~  180 (580)
                      .|++++|++.+++.
T Consensus        97 ~g~~~~A~~~l~~~  110 (112)
T d1hxia_          97 EHNANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHH
Confidence            89999998888763

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.42  E-value=0.0004  Score=62.30  Aligned_cols=134  Identities=13%  Similarity=0.051  Sum_probs=57.5

Q ss_pred             ChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHH
Q 043144          118 DIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLC  197 (580)
Q Consensus       118 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~  197 (580)
                      +..-...++..|.+.|.++.|..+|..+..         |..++..+.+.++++.|.+++.+..   +..+|..+...+.
T Consensus        13 n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l~   80 (336)
T d1b89a_          13 NNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACV   80 (336)
T ss_dssp             ----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHHH
Confidence            333334445555555555555555543321         3345555555555555555555542   3445555555555


Q ss_pred             hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhc
Q 043144          198 DSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKE  269 (580)
Q Consensus       198 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  269 (580)
                      +..+...+.     +.......+......++..|-..|.+++...+++...... ..+...++.++..|++.
T Consensus        81 ~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          81 DGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT
T ss_pred             hCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHh
Confidence            554443321     1111122233444455555556666666666665554321 23444555555555554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=7.7e-07  Score=67.68  Aligned_cols=94  Identities=15%  Similarity=0.160  Sum_probs=47.8

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGK---VDEAIKLFHDLERLGVRPN-VITYNSIMLGL  511 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  511 (580)
                      .++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.++   +++|+.+++++...++.|+ ..+|..++.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            34445555555555555555555543 3344555555555544332   3345555555554333222 22444555555


Q ss_pred             HhcCCHHHHHHHHHHHHHc
Q 043144          512 CKARQTYRAIDILADMVTR  530 (580)
Q Consensus       512 ~~~g~~~~A~~~~~~~~~~  530 (580)
                      .+.|++++|++.|+++++.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            5555555555555555554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.35  E-value=0.00086  Score=60.05  Aligned_cols=128  Identities=14%  Similarity=0.099  Sum_probs=53.7

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCH
Q 043144          158 NVLISGYCRLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGV  237 (580)
Q Consensus       158 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~  237 (580)
                      ..++..|.+.|.++.|..+|..++      -|..++..+.+.+++..|.+++.+.      .+..+|..+...+.+..+.
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~   85 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEF   85 (336)
T ss_dssp             -----------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHH
Confidence            344555555666666666665442      2445555555555555555554432      1344555555555544433


Q ss_pred             hHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHh
Q 043144          238 GQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCS  303 (580)
Q Consensus       238 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~  303 (580)
                      ..+     .+.......+......++..|-..|.+++...+++...... ..+...++.++..|++
T Consensus        86 ~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak  145 (336)
T d1b89a_          86 RLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  145 (336)
T ss_dssp             HHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred             HHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHH
Confidence            322     11111112233333445555555555555555555443221 3344444445544444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-05  Score=65.59  Aligned_cols=85  Identities=11%  Similarity=-0.133  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGI  546 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  546 (580)
                      .+|+.+..+|.+.|++++|+..++++++..+. ++..|..++.+|...|++++|+..|+++++.. |.+......+..+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~  140 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            35667788888999999999999999887654 78888889999999999999999999998763 55677776666665


Q ss_pred             HhcCCHH
Q 043144          547 AYEGLAK  553 (580)
Q Consensus       547 ~~~g~~~  553 (580)
                      .+.+...
T Consensus       141 ~~~~~~~  147 (170)
T d1p5qa1         141 QRIRRQL  147 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.1e-06  Score=65.19  Aligned_cols=95  Identities=16%  Similarity=0.110  Sum_probs=55.2

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 043144          471 SLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPT-EATYTILIEGI  546 (580)
Q Consensus       471 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~  546 (580)
                      .++..+...+++++|.+.|+++...++. +..++..++.++.+.++   +++|+.++++++.....|+ ..+|..++.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4555566666666666666666655433 55666666666655443   3346666666654321122 23556666666


Q ss_pred             HhcCCHHHHHHHHHHHHhCC
Q 043144          547 AYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       547 ~~~g~~~~A~~~~~~~~~~g  566 (580)
                      .+.|++++|++.|+++++..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            66666666666666666654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.1e-05  Score=65.53  Aligned_cols=67  Identities=9%  Similarity=-0.125  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVVK  569 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~  569 (580)
                      .+|+.++.+|.+.|++++|+..+++.++.. |.+..+|..++.+|...|++++|...|+++.+.++.-
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n  129 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNN  129 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSC
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCC
Confidence            457778899999999999999999999874 6789999999999999999999999999999987543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.9e-06  Score=64.63  Aligned_cols=92  Identities=11%  Similarity=0.170  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-------HHHHHH
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD-------VITYNV  159 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~  159 (580)
                      +..+...+.+.|++++|+..|++++.. .|.+..++..+..+|.+.|++++|+..++++++.. +.+       ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~-~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL-DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence            445566677777777777777777665 34456666667777777777777777776665432 111       124444


Q ss_pred             HHHHHHhcCChhHHHHHHHHc
Q 043144          160 LISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       160 l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      ++..+...+++++|++.|++.
T Consensus        85 lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHH
Confidence            555555566666666666554

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.2e-06  Score=85.44  Aligned_cols=227  Identities=13%  Similarity=0.027  Sum_probs=118.2

Q ss_pred             HHHHHHHHhhhCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHH
Q 043144          274 EAIKFLNDMPSYGCQPN-VITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSV-VTFNILINFLCRKGLLGRAIDILEK  351 (580)
Q Consensus       274 ~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~  351 (580)
                      +|.+.|++..+.  .|+ ...+..+..++...+++++|   |++++..+  |+. ...+..  ...-...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e--~~Lw~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVE--QDLWNHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHH--HHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHH--HHHHHHHHHHHHHHHHH
Confidence            677888877653  233 34455566667777777665   56665442  211 111111  11111123456666666


Q ss_pred             hhhCCCCCCHhhHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 043144          352 MPKHGCTPNSLSYNPVLHGF--CKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSP  429 (580)
Q Consensus       352 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~  429 (580)
                      ..+....++..-.......+  ...+.++.|+..+....... .++...+..+...+.+.|+.+.|...+.......  +
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~  151 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C  151 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H
Confidence            55543333333222222222  22344555655555443321 1234467777888888888888888777665422  1


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 043144          430 VLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIML  509 (580)
Q Consensus       430 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  509 (580)
                       ...+..+...+...|++++|...|++..+.. +-+...|+.|...+...|+..+|...|.+..... .|...++..|..
T Consensus       152 -~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~  228 (497)
T d1ya0a1         152 -QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQK  228 (497)
T ss_dssp             -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHH
Confidence             3456778888888999999999999988764 3456788889999999999999999999988765 357778888877


Q ss_pred             HHHhcC
Q 043144          510 GLCKAR  515 (580)
Q Consensus       510 ~~~~~g  515 (580)
                      .+.+..
T Consensus       229 ~~~~~~  234 (497)
T d1ya0a1         229 ALSKAL  234 (497)
T ss_dssp             HHHHHT
T ss_pred             HHHHhh
Confidence            766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=6e-07  Score=87.64  Aligned_cols=224  Identities=10%  Similarity=-0.013  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHc
Q 043144          102 EGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPD-VITYNVLISGYCRLGEIDNALQVLERM  180 (580)
Q Consensus       102 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  180 (580)
                      +|.++|++++.. .+.....+..+..++..+|++++|   |++++..+  |+ ...++.....+  ...+..+++.++..
T Consensus         4 eA~q~~~qA~~l-~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw--~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVL-KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW--NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHH-HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH--HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH--HHHHHHHHHHHHHh
Confidence            677888888764 122334556666677777777665   56655432  21 11111111111  11234555555554


Q ss_pred             ---CCCCCcchHHH--HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCC
Q 043144          181 ---SVAPDVVTYNT--ILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPD  255 (580)
Q Consensus       181 ---~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  255 (580)
                         ...++..-...  ........+.++.|+..+....+.. +++...+..+...+.+.|+.++|...+.......   .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence               11122221111  1122223455555555555444332 2345566667777777888888877776665431   1


Q ss_pred             HhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 043144          256 VVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPSVVTFNILINF  335 (580)
Q Consensus       256 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  335 (580)
                      ..++..+...+...|++++|...|.+..+.. +.+...|+.+...+...|+..+|...|.+.+... +|...++..|...
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            3456667778888888888888888877654 4556778888888888888888888888887664 4566677777766


Q ss_pred             HHhc
Q 043144          336 LCRK  339 (580)
Q Consensus       336 ~~~~  339 (580)
                      +.+.
T Consensus       230 ~~~~  233 (497)
T d1ya0a1         230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.17  E-value=3.9e-05  Score=60.91  Aligned_cols=64  Identities=19%  Similarity=0.095  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          503 TYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       503 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      +|..++.+|.+.|++++|++.++++++.. |.+..+|..++.++...|++++|...|++..+..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P  132 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  132 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            34445555555555555555555555442 44455555555555555555555555555555443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=9.6e-06  Score=62.32  Aligned_cols=93  Identities=12%  Similarity=0.116  Sum_probs=45.1

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC-CC-----HHHHHHHHH
Q 043144          436 TVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVR-PN-----VITYNSIML  509 (580)
Q Consensus       436 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-----~~~~~~l~~  509 (580)
                      .+...+...|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|+..++++++..+. +.     ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34444555555555555555555443 224445555555555555555555555555432111 00     123444444


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 043144          510 GLCKARQTYRAIDILADMVT  529 (580)
Q Consensus       510 ~~~~~g~~~~A~~~~~~~~~  529 (580)
                      .+...+++++|++.+++.+.
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55555555555555555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.13  E-value=4.6e-05  Score=60.50  Aligned_cols=77  Identities=9%  Similarity=-0.071  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      .+|..+..+|.+.|++++|+..++++.+.++. +..+|..++.+|...|++++|+..|++.++.. |.+..+...+..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~  144 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            46677888899999999999999999887654 78899999999999999999999999998763 4456665555443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.11  E-value=3.1e-05  Score=62.80  Aligned_cols=83  Identities=8%  Similarity=-0.066  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 043144          466 TITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEG  545 (580)
Q Consensus       466 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  545 (580)
                      ...|..+..++.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++.. |.+......+..+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~  154 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            445667778888888999999988888877654 77888888888888899999999888888763 5566666666655


Q ss_pred             HHhcC
Q 043144          546 IAYEG  550 (580)
Q Consensus       546 ~~~~g  550 (580)
                      .....
T Consensus       155 ~~~l~  159 (169)
T d1ihga1         155 KQKIK  159 (169)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.08  E-value=0.00014  Score=58.62  Aligned_cols=95  Identities=6%  Similarity=-0.087  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 043144          468 TYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIA  547 (580)
Q Consensus       468 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  547 (580)
                      +|..+..+|.+.|++++|+..++++.+..+. +...|..++.+|...|++++|+..|++++... |.+..+...+..+..
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            4666777888999999999999998877654 78888888999999999999999999988763 566666666666655


Q ss_pred             hcCCHH-HHHHHHHHHHh
Q 043144          548 YEGLAK-EALDLLNQLCS  564 (580)
Q Consensus       548 ~~g~~~-~A~~~~~~~~~  564 (580)
                      ..+... ...+.+.+|.+
T Consensus       144 ~~~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHh
Confidence            544433 34455555543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.02  E-value=4.9e-05  Score=61.49  Aligned_cols=27  Identities=7%  Similarity=0.027  Sum_probs=23.1

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHh
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVY  112 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  112 (580)
                      .+......+.+.|++.+|+..|+.++.
T Consensus        17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~   43 (168)
T d1kt1a1          17 IVKEKGTVYFKGGKYVQAVIQYGKIVS   43 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456778889999999999999998865

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.98  E-value=2.2e-05  Score=63.76  Aligned_cols=126  Identities=10%  Similarity=0.006  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 043144           87 SNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR  166 (580)
Q Consensus        87 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  166 (580)
                      +......+...|++++|++.|++++...            .............       ... +.....+..++.+|.+
T Consensus        30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~------------~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~   89 (169)
T d1ihga1          30 LKNIGNTFFKSQNWEMAIKKYTKVLRYV------------EGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLK   89 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH------------HHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhh------------hhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHh
Confidence            4456677889999999999998886420            0000000101000       000 2244456666777777


Q ss_pred             cCChhHHHHHHHHc-CC-CCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 043144          167 LGEIDNALQVLERM-SV-APDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCK  233 (580)
Q Consensus       167 ~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~  233 (580)
                      .|++++|+..++++ .. |.+..+|..++.++...|++++|++.|+++++.. +.+......+..+..+
T Consensus        90 ~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          90 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK  157 (169)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             hcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            77777777777776 32 3345567777777777777777777777777654 2244444444444333

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.95  E-value=0.00012  Score=59.46  Aligned_cols=121  Identities=15%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 043144          437 VIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQ  516 (580)
Q Consensus       437 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  516 (580)
                      ........|++++|...|.+.+...  ++...     ..+ ..+.+  +...-..+..    .....+..++.++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l-----~~~-~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL-----DDL-RDFQF--VEPFATALVE----DKVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT-----GGG-TTSTT--HHHHHHHHHH----HHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc-----ccC-cchHH--HHHHHHHHHH----HHHHHHHHHHHHHHHCCC
Confidence            3456678899999999999988651  11100     000 00000  0000001110    012344555556666666


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----hCCCCCchh
Q 043144          517 TYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLC-----SRGVVKKSS  572 (580)
Q Consensus       517 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~g~~~~~~  572 (580)
                      +++|+..+++++... +.+...|..++.+|...|+.++|.+.|+++.     +.|+.|.+.
T Consensus        83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            666666666666542 5555666666666666666666666666552     245555443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.89  E-value=1.8e-05  Score=62.15  Aligned_cols=73  Identities=11%  Similarity=-0.123  Sum_probs=52.7

Q ss_pred             HHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc----------CChHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 043144           94 LVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKV----------GKTRKATRVMEIVEDSGAVPDVITYNVLISG  163 (580)
Q Consensus        94 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  163 (580)
                      |-+.+.+++|++.|+.++.. .|.+..++..+..++...          +.+++|+..|++.++.. |.+..+|..++.+
T Consensus         7 ~~r~~~fe~A~~~~e~al~~-~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~   84 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS-NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNA   84 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh-CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHH
Confidence            44556688899999988887 566777888888777644          34467777777777766 6667777777777


Q ss_pred             HHhcC
Q 043144          164 YCRLG  168 (580)
Q Consensus       164 ~~~~g  168 (580)
                      |...|
T Consensus        85 y~~~g   89 (145)
T d1zu2a1          85 YTSFA   89 (145)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            76554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.88  E-value=1.3e-05  Score=69.95  Aligned_cols=121  Identities=12%  Similarity=-0.007  Sum_probs=80.5

Q ss_pred             HHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhH
Q 043144           93 RLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDN  172 (580)
Q Consensus        93 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  172 (580)
                      ...+.|++++|+..+++.++. .|.|...+..++..|+..|++++|...|+...+.. |.+...+..+...+...+..++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~-~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~   82 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKD   82 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHT-CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHH
Confidence            455678888898888888887 56777888888888888899988888888888775 4455566666666554444444


Q ss_pred             HHHHHHHc---CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 043144          173 ALQVLERM---SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEK  215 (580)
Q Consensus       173 A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  215 (580)
                      +..-....   ..+++...+...+..+...|+.++|.+.++++.+.
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            43332222   11222233344455566677777777777776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.84  E-value=0.0002  Score=58.21  Aligned_cols=125  Identities=8%  Similarity=0.025  Sum_probs=78.4

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYC  165 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  165 (580)
                      ............|++++|.+.|.+++..- +.+....       ...+.+  +...-..+..    .....+..++..+.
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~-rG~~l~~-------~~~~~w--~~~~r~~l~~----~~~~a~~~la~~~~   78 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREW-RGPVLDD-------LRDFQF--VEPFATALVE----DKVLAHTAKAEAEI   78 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CSSTTGG-------GTTSTT--HHHHHHHHHH----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhC-ccccccc-------CcchHH--HHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            34556678899999999999999998761 1111000       000111  1111111111    12345666777788


Q ss_pred             hcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHh-----CCCCCChhhH
Q 043144          166 RLGEIDNALQVLERM--SVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLE-----KECYPDVITY  224 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~  224 (580)
                      ..|++++|+..++++  -.+.+...|..++.+|.+.|+.++|++.|+++..     .|+.|...+-
T Consensus        79 ~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          79 ACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            888888888888877  3345667788888888888888888888887643     4777776543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.78  E-value=6.3e-05  Score=58.93  Aligned_cols=115  Identities=17%  Similarity=0.112  Sum_probs=69.2

Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 043144          443 KVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSR----------EGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLC  512 (580)
Q Consensus       443 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  512 (580)
                      +.+.+++|...|+..++.. +.+...+..+..++..          .+.+++|+..|+++.+.++. +..+|..++.+|.
T Consensus         9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~   86 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcch-hhHHHhhHHHHHH
Confidence            3444566666666666543 3345555555555442          23456788888887776654 6777777777776


Q ss_pred             hcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 043144          513 KAR-----------QTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       513 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~  567 (580)
                      ..|           .+++|.+.|+++++.  .|+...+...+..+      ..|.+++.+..+.|+
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            654           367888888888865  45544444333322      356666666666553

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.76  E-value=2.3e-05  Score=68.38  Aligned_cols=126  Identities=13%  Similarity=-0.020  Sum_probs=77.0

Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 043144          441 LSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRA  520 (580)
Q Consensus       441 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  520 (580)
                      ..+.|++++|+..+++.++.. +-|...+..+...++..|++++|...++...+..+. +...+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHH
Confidence            345688888888888888764 446777888888888888888888888888775433 344555555444433333332


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          521 IDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      ..-.......+-+++...+...+..+...|+.++|.++++++.+..+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~  131 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE  131 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence            221111111111222233444556677788888888888887766543

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.49  E-value=0.001  Score=52.51  Aligned_cols=90  Identities=12%  Similarity=0.064  Sum_probs=51.8

Q ss_pred             HHHhCCCHHHHHHHHHHHHhCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC---
Q 043144          475 GLSREGKVDEAIKLFHDLERLGVR-P----------NVITYNSIMLGLCKARQTYRAIDILADMVTR-----SCKPT---  535 (580)
Q Consensus       475 ~~~~~g~~~~A~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~---  535 (580)
                      .+...|++++|+..|++.++.... |          ....|+.+..+|...|++++|++.+++.++.     ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666665432111 1          1245666677777777777777777666532     11111   


Q ss_pred             --HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 043144          536 --EATYTILIEGIAYEGLAKEALDLLNQLCS  564 (580)
Q Consensus       536 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  564 (580)
                        ...+..++.+|...|++++|.+.|+++.+
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              12455567777777777777777777654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.30  E-value=0.0013  Score=51.99  Aligned_cols=25  Identities=20%  Similarity=0.066  Sum_probs=13.7

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 043144          189 YNTILRTLCDSGKLNLAMEVLHKQL  213 (580)
Q Consensus       189 ~~~l~~~~~~~g~~~~A~~~~~~~~  213 (580)
                      ++.++.+|...|++++|+..|++++
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555555555555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=0.0061  Score=46.25  Aligned_cols=111  Identities=11%  Similarity=0.023  Sum_probs=69.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 043144          446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIMLGLCK----ARQTYRAI  521 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  521 (580)
                      ++++|.+.|++..+.|   +......|.  .....+.++|.+.+++..+.|   ++.....|...|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g---~~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELN---EMFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTT---CTTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCC---Chhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            4566666666666655   112222222  234456777788877777654   44555556666554    45678888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCC
Q 043144          522 DILADMVTRSCKPTEATYTILIEGIAY----EGLAKEALDLLNQLCSRGV  567 (580)
Q Consensus       522 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~g~  567 (580)
                      ++|++..+.+   ++.....|...|..    ..+.++|.+++++..+.|.
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888887765   45556666666654    4577888888888887774

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0014  Score=46.47  Aligned_cols=75  Identities=8%  Similarity=-0.053  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhCC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 043144          467 ITYSSLVGGLSREGKVDEAIKLFHDLERLG-----VRPN-VITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYT  540 (580)
Q Consensus       467 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  540 (580)
                      ...-.+...+.+.|++++|...|+++.+..     ..++ ..++..++.+|.+.|++++|+..++++++.. |.++.++.
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~   84 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHH
Confidence            334456677777778888877777765321     1122 4567777777777788888887777777653 44455555


Q ss_pred             HH
Q 043144          541 IL  542 (580)
Q Consensus       541 ~l  542 (580)
                      .+
T Consensus        85 Nl   86 (95)
T d1tjca_          85 NL   86 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.0015  Score=46.25  Aligned_cols=75  Identities=11%  Similarity=-0.018  Sum_probs=57.5

Q ss_pred             cHHHHHHHHHHcCChHHHHHHHHHHHhCC-----CCCC-hhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144           86 ESNNHLRRLVRNGELEEGFKFLESMVYHG-----DIPD-IIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNV  159 (580)
Q Consensus        86 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  159 (580)
                      .|-.+...+.+.|++++|+..|+++++..     ..++ ..++..+..++.+.|++++|+..++++++.. |.+..+++.
T Consensus         7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~N   85 (95)
T d1tjca_           7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            45678889999999999999999987541     1112 3567888889999999999999999988876 555666665


Q ss_pred             HH
Q 043144          160 LI  161 (580)
Q Consensus       160 l~  161 (580)
                      +.
T Consensus        86 l~   87 (95)
T d1tjca_          86 LK   87 (95)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.81  E-value=0.008  Score=45.57  Aligned_cols=110  Identities=11%  Similarity=0.048  Sum_probs=56.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCChhHHH
Q 043144           99 ELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCR----LGEIDNAL  174 (580)
Q Consensus        99 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  174 (580)
                      ++++|+++|+++.+.|.   ...+..+..  ....+.++|..++++..+.|   ++..+..|...|..    ..++++|+
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhcc--ccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            56677777777776652   223333322  33456667777777766655   44555555555543    23455555


Q ss_pred             HHHHHcCCCCCcchHHHHHHHHHh----cCChhHHHHHHHHHHhCC
Q 043144          175 QVLERMSVAPDVVTYNTILRTLCD----SGKLNLAMEVLHKQLEKE  216 (580)
Q Consensus       175 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  216 (580)
                      ++|++.-..-++.....|...|..    ..+.++|..+|++..+.|
T Consensus        80 ~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            555555111233334444444433    234444444444444443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.57  E-value=0.066  Score=38.93  Aligned_cols=67  Identities=16%  Similarity=0.166  Sum_probs=35.2

Q ss_pred             CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 043144          499 PNVITYNSIMLGLCKARQ---TYRAIDILADMVTRSCKPTE-ATYTILIEGIAYEGLAKEALDLLNQLCSRG  566 (580)
Q Consensus       499 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g  566 (580)
                      +...+--..++++.++.+   .++|+.++++..+.+ +.+. ..+..|+-+|.+.|++++|+++++++++..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            444454455555554433   345555666555432 2222 455555556666666666666666665544

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.46  E-value=0.27  Score=35.27  Aligned_cols=66  Identities=14%  Similarity=0.183  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 043144          502 ITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAKEALDLLNQLCSRGVV  568 (580)
Q Consensus       502 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~  568 (580)
                      ..++..+..+..+|.-+.-.++++++.+.+ .+++.....++.+|.+.|...++-+++.++-++|.+
T Consensus        87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            344455556666666666666666665543 666666677777777777777777777777776653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=1.1  Score=41.50  Aligned_cols=415  Identities=11%  Similarity=0.012  Sum_probs=229.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHH
Q 043144           89 NHLRRLVRNGELEEGFKFLESMVYHGDIPDIIPCTSLIRGFCK--VGKTRKATRVMEIVEDSGA-VPDVITYNVLISGYC  165 (580)
Q Consensus        89 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~  165 (580)
                      ..+....+.|+..++.++...+..  . | ...|...-..-..  .....+....+   .+..- |.....-...+..+.
T Consensus        11 ~~a~~a~~~~~~~~~~~~~~~L~d--y-p-L~pYl~~~~l~~~~~~~~~~~i~~Fl---~~~p~~P~~~~lr~~~l~~L~   83 (450)
T d1qsaa1          11 AQIKQAWDNRQMDVVEQMMPGLKD--Y-P-LYPYLEYRQITDDLMNQPAVTVTNFV---RANPTLPPARTLQSRFVNELA   83 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHSGGGTT--S-T-THHHHHHHHHHHTGGGCCHHHHHHHH---HHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhcC--C-C-CHHHHHHHHHHhccccCCHHHHHHHH---HHCCCChhHHHHHHHHHHHHH
Confidence            345567788888888777777632  2 2 2333333222222  23344433333   22210 111122233455667


Q ss_pred             hcCChhHHHHHHHHcCCCCCcchHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHH
Q 043144          166 RLGEIDNALQVLERMSVAPDVVTYNTILRTLCDSGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLD  245 (580)
Q Consensus       166 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  245 (580)
                      +.++++..+..+.  ..+.+...-...+.+....|+.++|...+..+-..|..                 ..+....+|.
T Consensus        84 ~~~~w~~~~~~~~--~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-----------------~p~~c~~l~~  144 (450)
T d1qsaa1          84 RREDWRGLLAFSP--EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-----------------QPNACDKLFS  144 (450)
T ss_dssp             HTTCHHHHHHHCC--SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-----------------CCTHHHHHHH
T ss_pred             hccCHHHHHHhcc--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-----------------CchHHHHHHH
Confidence            7788776555443  22344444556777888889988888877776655421                 1223344555


Q ss_pred             HHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 043144          246 EMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSYGCQPNVITHNIILRSMCSTGRWMDAERLLAEMVLKGCSPS  325 (580)
Q Consensus       246 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  325 (580)
                      .+...|. .+...+-.-+......|+...|..+...+...    ........+....   +...+.....   ..  ..+
T Consensus       145 ~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~---~p~~~~~~~~---~~--~~~  211 (450)
T d1qsaa1         145 VWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLAN---NPNTVLTFAR---TT--GAT  211 (450)
T ss_dssp             HHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHH---CGGGHHHHHH---HS--CCC
T ss_pred             HHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHh---ChHhHHHHHh---cC--CCC
Confidence            5555443 34555555566667789999888888765421    2233333333332   2222222221   11  223


Q ss_pred             hhhHHHHHHHHHh--cCCHHHHHHHHHHhhhCCCCCCHhhHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 043144          326 VVTFNILINFLCR--KGLLGRAIDILEKMPKHGCTPNSLSYNPVL----HGFCKEKKMDRAIEYLEIMVSRGCYPDIVTY  399 (580)
Q Consensus       326 ~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  399 (580)
                      ......+..++.+  ..+.+.+...+......... +...+..+-    ......+..+.+...+......+.  +....
T Consensus       212 ~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~  288 (450)
T d1qsaa1         212 DFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLI  288 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHH
T ss_pred             hhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHH
Confidence            3322223333322  35788888888887664322 332232222    222345667888888887776543  44444


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhC
Q 043144          400 NTLLTALCKDGKVDVAVEILNQLSNKHCSPVLITYNTVIDGLSKVGKTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSRE  479 (580)
Q Consensus       400 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~  479 (580)
                      ...+......+++..+...+..+.... .......-=+..++...|+.++|...|.....   .++  -|..|.  ..+.
T Consensus       289 ~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LA--a~~L  360 (450)
T d1qsaa1         289 ERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVA--AQRI  360 (450)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHH--HHHT
T ss_pred             HHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHH--HHHc
Confidence            445555667789999999988875432 11223333456788899999999999998864   233  343332  2222


Q ss_pred             CCHHHHHHHHHHHHhCCC--CCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 043144          480 GKVDEAIKLFHDLERLGV--RPN-VIT---YNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILIEGIAYEGLAK  553 (580)
Q Consensus       480 g~~~~A~~~~~~~~~~~~--~~~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  553 (580)
                      |..-.       +....+  .+. ...   -..-+..+...|+...|...|..+...   .++.....++....+.|.++
T Consensus       361 g~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~  430 (450)
T d1qsaa1         361 GEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWD  430 (450)
T ss_dssp             TCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHH
T ss_pred             CCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChh
Confidence            22100       000000  001 000   112345677889999999999988754   35667778888899999999


Q ss_pred             HHHHHHHHHH
Q 043144          554 EALDLLNQLC  563 (580)
Q Consensus       554 ~A~~~~~~~~  563 (580)
                      .|+....+..
T Consensus       431 ~aI~a~~~~~  440 (450)
T d1qsaa1         431 LSVQATIAGK  440 (450)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHH
Confidence            9998777653

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=1.9  Score=39.63  Aligned_cols=352  Identities=10%  Similarity=0.006  Sum_probs=205.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHc--CCCCCcchHHHHHHHHHh
Q 043144          121 PCTSLIRGFCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERM--SVAPDVVTYNTILRTLCD  198 (580)
Q Consensus       121 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~  198 (580)
                      .-...+..+.+.+++......+    .. .+.+...-..+..+....|+.++|...+..+  .-.........+...+  
T Consensus        74 lr~~~l~~L~~~~~w~~~~~~~----~~-~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~--  146 (450)
T d1qsaa1          74 LQSRFVNELARREDWRGLLAFS----PE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVW--  146 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHC----CS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHH--
T ss_pred             HHHHHHHHHHhccCHHHHHHhc----cC-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHHHHHHHHH--
Confidence            3345566778888887655444    22 2556666667788888899999999988876  2122233333333333  


Q ss_pred             cCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHH
Q 043144          199 SGKLNLAMEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKF  278 (580)
Q Consensus       199 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  278 (580)
                                    .+.| ..+...+-.-+......|++..|..+...+...    ........+........   +...
T Consensus       147 --------------~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~---~~~~  204 (450)
T d1qsaa1         147 --------------RASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNT---VLTF  204 (450)
T ss_dssp             --------------HHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGG---HHHH
T ss_pred             --------------HhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHh---HHHH
Confidence                          3332 233333444555666778999888887654321    23344455554433222   2222


Q ss_pred             HHHhhhCCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHHcCCCCChhhHHHHHH----HHHhcCCHHHHHHHHHHh
Q 043144          279 LNDMPSYGCQPNVITHNIILRSMCS--TGRWMDAERLLAEMVLKGCSPSVVTFNILIN----FLCRKGLLGRAIDILEKM  352 (580)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g~~~~a~~~~~~~  352 (580)
                      ....     .++......+..++.+  ..+.+.+..++........ .+...+..+..    .....+..+.+...+...
T Consensus       205 ~~~~-----~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~  278 (450)
T d1qsaa1         205 ARTT-----GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDA  278 (450)
T ss_dssp             HHHS-----CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHH
T ss_pred             HhcC-----CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhh
Confidence            2221     2233333333333333  3577888888888766432 22222322222    223456678888888777


Q ss_pred             hhCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCHH
Q 043144          353 PKHGCTPNSLSYNPVLHGFCKEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLSNKHCSPVLI  432 (580)
Q Consensus       353 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  432 (580)
                      ...+.  +.......+......+++..+...+..+... ........--+..++...|+.+.|...|..+...   ++  
T Consensus       279 ~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--  350 (450)
T d1qsaa1         279 IMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--  350 (450)
T ss_dssp             HHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--
T ss_pred             ccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--
Confidence            66533  4444444555667789999999999887533 2223445566778899999999999999998752   33  


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 043144          433 TYNTVIDGLSKVGKTEQAMKLLEEMRTKGL--KPDT----ITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNS  506 (580)
Q Consensus       433 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~--~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  506 (580)
                      -|..+...  +.|..-.       +....+  .+..    ..-..-+..+...|....|...|..+...   .+......
T Consensus       351 fYG~LAa~--~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~  418 (450)
T d1qsaa1         351 FYPMVAAQ--RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQ  418 (450)
T ss_dssp             HHHHHHHH--HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHH
T ss_pred             hHHHHHHH--HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHH
Confidence            23333221  1221100       000000  0000    00112355677899999999999988753   24556667


Q ss_pred             HHHHHHhcCCHHHHHHHHHHH
Q 043144          507 IMLGLCKARQTYRAIDILADM  527 (580)
Q Consensus       507 l~~~~~~~g~~~~A~~~~~~~  527 (580)
                      ++....+.|.++.|+....+.
T Consensus       419 la~lA~~~g~~~~aI~a~~~~  439 (450)
T d1qsaa1         419 LARYAFNNQWWDLSVQATIAG  439 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHCCChhHHHHHHHHH
Confidence            788888999999999877665

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.12  E-value=0.46  Score=34.32  Aligned_cols=68  Identities=10%  Similarity=0.072  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 043144          463 KPDTITYSSLVGGLSREG---KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTR  530 (580)
Q Consensus       463 ~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  530 (580)
                      .|...+--....++.+..   ++++++.+|+++.+.++......+..|..+|.+.|++++|++.++.+++.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            345555555555565443   35677777777765432212345566777778888888888888888765

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.42  E-value=0.89  Score=32.54  Aligned_cols=137  Identities=12%  Similarity=0.095  Sum_probs=69.1

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHcCCCCCcc---hHHHHHHHHHhcCChhHH
Q 043144          129 FCKVGKTRKATRVMEIVEDSGAVPDVITYNVLISGYCRLGEIDNALQVLERMSVAPDVV---TYNTILRTLCDSGKLNLA  205 (580)
Q Consensus       129 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A  205 (580)
                      +.-.|..++..++..+.....   +..-||-++.-....-+-+-..++++.+|---|..   -...++.++...+.    
T Consensus        12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~----   84 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT----   84 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC----
T ss_pred             HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcc----
Confidence            345566667777766666532   34445555544444555555555555553222211   12233333333322    


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHhcCCHhHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 043144          206 MEVLHKQLEKECYPDVITYTILIEATCKESGVGQAMKLLDEMRNKGCIPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSY  285 (580)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  285 (580)
                                    +...+...++...+.|+-++-.+++..+.+.+ ++++...-.+..+|.+-|...++-+++.+.-+.
T Consensus        85 --------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~  149 (161)
T d1wy6a1          85 --------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKK  149 (161)
T ss_dssp             --------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence                          22223334445555566666666666654432 445555556666666666666666666666555


Q ss_pred             CC
Q 043144          286 GC  287 (580)
Q Consensus       286 ~~  287 (580)
                      |+
T Consensus       150 G~  151 (161)
T d1wy6a1         150 GE  151 (161)
T ss_dssp             TC
T ss_pred             hH
Confidence            53

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.06  E-value=1.5  Score=29.70  Aligned_cols=62  Identities=16%  Similarity=0.180  Sum_probs=44.1

Q ss_pred             CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 043144          481 KVDEAIKLFHDLERLGVRPNVITYNSIMLGLCKARQTYRAIDILADMVTRSCKPTEATYTILI  543 (580)
Q Consensus       481 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  543 (580)
                      +.=+..+-+..+......|++.+..+.+.+|.+.+++..|..+++-...+. .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            445666677777777777888888888888888888888888887776552 33444555544

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.68  E-value=6.2  Score=26.55  Aligned_cols=62  Identities=11%  Similarity=0.178  Sum_probs=45.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 043144          446 KTEQAMKLLEEMRTKGLKPDTITYSSLVGGLSREGKVDEAIKLFHDLERLGVRPNVITYNSIM  508 (580)
Q Consensus       446 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  508 (580)
                      +.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.+.... .++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            455677777777777888999999999999999999999999999886321 12334555443