Citrus Sinensis ID: 043159

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-
Protein Sequence
MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTSQSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTAHLRAESTNQSITNSVDLLH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
mipgdiagiqyylapenaaqlpanlgmmqaniqpnfHLNRLLanlpnslipqqghelmtsqssslsnnstsdeAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTElqlsspytnaslrdlgevpcntahlraestnqsitnsvdllh
Flexible Loop (DISEMBL)
MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTSQSSSLsnnstsdeaEEQQLriiderkqrrmisnresarrsrmrkqrhldELWSHVVRLRTENHnlidklnhvseshdRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTAHlraestnqsitnsvdllh
Low Complexity Region (SEG)
MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMtsqssslsnnstsDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTAHLRAESTNQSITNSVDLLH
Disordered region (IsUnstruct)
*****IAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLP**************************************************************DELWSHVVRLRTENHNLIDKL************************************************************************
Disordered Region (DISOPRED)
******************************************************************************************************R**RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ**************************************L*
Disordered Region (DISEMBL)
MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGH*********************QQLRIIDERKQRRMI**************RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTAHLRAESTNQSI********
Disordered Region (DISPRO)
MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQ**************************************************RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTA*******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTSQSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSPYTNASLRDLGEVPCNTAHLRAESTNQSITNSVDLLH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	201	2.2.26 [Sep-21-2011]
P24068	151	Ocs element-binding facto	N/A	no	0.616	0.821	0.351	1e-10
P42774	315	G-box-binding factor 1 OS	no	no	0.353	0.225	0.418	2e-07
P23922	349	Transcription factor HBP-	N/A	no	0.323	0.186	0.426	5e-07
Q99091	296	Light-inducible protein C	N/A	no	0.348	0.236	0.479	6e-07
P42776	382	G-box-binding factor 3 OS	no	no	0.532	0.280	0.341	2e-06
Q9M7Q4	416	ABSCISIC ACID-INSENSITIVE	no	no	0.263	0.127	0.509	3e-06
Q9M7Q5	392	ABSCISIC ACID-INSENSITIVE	no	no	0.333	0.170	0.402	5e-06
Q9M7Q2	431	ABSCISIC ACID-INSENSITIVE	no	no	0.333	0.155	0.417	8e-06
P12959	453	Regulatory protein opaque	N/A	no	0.407	0.181	0.365	1e-05
Q99089	411	Common plant regulatory f	N/A	no	0.328	0.160	0.424	2e-05

>sp|P24068|OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 4/128 (3%)

Query: 62  SSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTE 121
           SSSLS  +      +        R+++R +SNRESARRSR+RKQ+HLDEL   V RL+ +
Sbjct: 3   SSSLSPTAGRTSGSDGDSAADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQAD 62

Query: 122 NHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE----LQLSSPYTNASLRDLGEV 177
           N  +  +   ++  + RV QEN  LR  A++L   L      L+L   ++  ++    E+
Sbjct: 63  NARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRLVEEFSGVAMDIQEEM 122

Query: 178 PCNTAHLR 185
           P +   LR
Sbjct: 123 PADDPLLR 130

May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites.
Zea mays (taxid: 4577)

>sp|P42774|GBF1_ARATH G-box-binding factor 1 OS=Arabidopsis thaliana GN=GBF1 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/74 (41%), Positives = 46/74 (62%), Gaps = 3/74 (4%)

Query: 79  LRIIDER---KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES 135
           + + DER   +Q+R  SNRESARRSR+RKQ   ++L   V  L  EN +L D+L  +S  
Sbjct: 215 VPVKDERELKRQKRKQSNRESARRSRLRKQAECEQLQQRVESLSNENQSLRDELQRLSSE 274

Query: 136 HDRVLQENARLREE 149
            D++  EN  +++E
Sbjct: 275 CDKLKSENNSIQDE 288

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|P23922|HBP1A_WHEAT Transcription factor HBP-1a OS=Triticum aestivum PE=2 SV=1

 Score = 54.3 bits (129), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/68 (42%), Positives = 45/68 (66%), Gaps = 3/68 (4%)

Query: 83  DER---KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRV 139
           DER   KQ+R +SNRESARRSR+RKQ   +EL      L++EN +L  +L+ + + ++ +
Sbjct: 249 DERELKKQKRKLSNRESARRSRLRKQAECEELGQRAEALKSENSSLRIELDRIKKEYEEL 308

Query: 140 LQENARLR 147
           L +N  L+
Sbjct: 309 LSKNTSLK 316

Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.

Triticum aestivum (taxid: 4565)

>sp|Q99091|CPRF3_PETCR Light-inducible protein CPRF3 OS=Petroselinum crispum GN=CPRF3 PE=2 SV=1

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 35/73 (47%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 80  RIIDER---KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH 136
           R+ DER   +QRR  SNRESARRSR+RKQ   DEL   +  L  EN  L   L  +SE+ 
Sbjct: 190 RVNDERELKRQRRKQSNRESARRSRLRKQAKSDELQERLDNLSKENRILRKNLQRISEAC 249

Query: 137 DRVLQENARLREE 149
             V  EN  ++EE
Sbjct: 250 AEVTSENHSIKEE 262

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

>sp|P42776|GBF3_ARATH G-box-binding factor 3 OS=Arabidopsis thaliana GN=GBF3 PE=1 SV=2

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/117 (34%), Positives = 58/117 (49%), Gaps = 10/117 (8%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144
           +++RR  SNRESARRSR+RKQ   +EL   V  L  EN  L  +LN ++E  D++   NA
Sbjct: 261 KRERRKQSNRESARRSRLRKQAETEELARKVEALTAENMALRSELNQLNEKSDKLRGANA 320

Query: 145 RLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTAHLRAESTNQSITNSVDLLH 201
            L          L +L+ S P        L  V  + A  + ++   + +NS   LH
Sbjct: 321 TL----------LDKLKCSEPEKRVPANMLSRVKNSGAGDKNKNQGDNDSNSTSKLH 367

Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q4|AI5L5_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 5 OS=Arabidopsis thaliana GN=ABF2 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 34/53 (64%)

Query: 82  IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134
           + ER+QRRMI NRESA RSR RKQ +  EL + V +L+ EN  L  K   + E
Sbjct: 335 VVERRQRRMIKNRESAARSRARKQAYTVELEAEVAKLKEENDELQRKQARIME 387

Involved in ABA and stress responses and acts as a positive component of glucose signal transduction. Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q5|AI5L4_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 4 OS=Arabidopsis thaliana GN=ABF1 PE=1 SV=1

 Score = 51.2 bits (121), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 42/67 (62%)

Query: 79  LRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDR 138
           L  + ER+Q+RMI NRESA RSR RKQ +  EL + +  L+  N +L  K   + ++H+ 
Sbjct: 307 LEKVVERRQKRMIKNRESAARSRARKQAYTLELEAEIESLKLVNQDLQKKQAEIMKTHNS 366

Query: 139 VLQENAR 145
            L+E ++
Sbjct: 367 ELKEFSK 373

Binds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M7Q2|AI5L7_ARATH ABSCISIC ACID-INSENSITIVE 5-like protein 7 OS=Arabidopsis thaliana GN=ABF4 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 39/67 (58%)

Query: 79  LRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDR 138
           L  + ER+QRRMI NRESA RSR RKQ +  EL + + +L+  N  L  K   + E    
Sbjct: 347 LEKVIERRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKTNQELQKKQAEMVEMQKN 406

Query: 139 VLQENAR 145
            L+E ++
Sbjct: 407 ELKETSK 413

Functions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter.

Arabidopsis thaliana (taxid: 3702)

>sp|P12959|OP2_MAIZE Regulatory protein opaque-2 OS=Zea mays GN=O2 PE=1 SV=1

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/82 (36%), Positives = 46/82 (56%)

Query: 73  EAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV 132
           E E    ++  E + R+  SNRESARRSR RK  HL EL   V +L+ EN  L+ ++  +
Sbjct: 215 EVEILGFKMPTEERVRKKESNRESARRSRYRKAAHLKELEDQVAQLKAENSCLLRRIAAL 274

Query: 133 SESHDRVLQENARLREEASDLR 154
           ++ ++    +N  LR +   LR
Sbjct: 275 NQKYNDANVDNRVLRADMETLR 296

Involved in the regulation of the endosperm-specific production of albumin b-32 and other zein proteins. It is a trans-acting transcriptional activator that binds to the consensus sequence 5'-GATGAYRTGR-3'.

Zea mays (taxid: 4577)

>sp|Q99089|CPRF1_PETCR Common plant regulatory factor 1 OS=Petroselinum crispum GN=CPRF1 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%)

Query: 83  DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
           D +++RR  SNRESARRSR+RKQ   +EL   V  L  EN  L  ++N ++ + +++  +
Sbjct: 269 DLKRERRKQSNRESARRSRLRKQAEAEELAIKVDSLTAENMALKAEINRLTLTAEKLTND 328

Query: 143 NARLRE 148
           N+RL E
Sbjct: 329 NSRLLE 334

Binds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.

Petroselinum crispum (taxid: 4043)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
224111822	200	predicted protein [Populus trichocarpa]	0.995	1.0	0.746	4e-75
224099281	200	predicted protein [Populus trichocarpa]	0.995	1.0	0.731	1e-72
255546989	200	Ocs element-binding factor, putative [Ri	0.990	0.995	0.752	9e-69
147782835	195	hypothetical protein VITISV_032595 [Viti	0.970	1.0	0.721	4e-66
225425023	195	PREDICTED: uncharacterized protein LOC10	0.970	1.0	0.721	7e-66
356499972	199	PREDICTED: ocs element-binding factor 1-	0.980	0.989	0.633	7e-65
449434700	200	PREDICTED: ocs element-binding factor 1-	0.985	0.99	0.674	2e-63
449478335	200	PREDICTED: uncharacterized protein LOC10	0.985	0.99	0.669	2e-62
351721340	198	bZIP transcription factor bZIP35 [Glycin	0.980	0.994	0.636	7e-62
13430400	193	bZip transcription factor [Phaseolus vul	0.955	0.994	0.601	4e-59

>gi|224111822|ref|XP_002315989.1| predicted protein [Populus trichocarpa] gi|222865029|gb|EEF02160.1| predicted protein [Populus trichocarpa]

 Score =  286 bits (731), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 150/201 (74%), Positives = 170/201 (84%), Gaps = 1/201 (0%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+PG++ GI+Y  A +N    PAN GMMQ +  P+FH NRLL+NL NS +PQ  +E    
Sbjct: 1   MLPGELTGIRYLTADQNLVPFPANFGMMQQSNIPSFHFNRLLSNLQNSSLPQPVYEF-AP 59

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
           QSSSLSNNSTSDE+EE QL IIDERKQRRMISNRESARRSRMRKQ+HLDELWS VVRLRT
Sbjct: 60  QSSSLSNNSTSDESEEHQLSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRT 119

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENHNLIDKL+HVSE HDRVLQENARL++EASD RQMLT+ Q+ SPYT  +LRDL EVPCN
Sbjct: 120 ENHNLIDKLSHVSECHDRVLQENARLKQEASDFRQMLTDFQIGSPYTTTALRDLEEVPCN 179

Query: 181 TAHLRAESTNQSITNSVDLLH 201
           TAHLRAES+NQSIT+SVDLLH
Sbjct: 180 TAHLRAESSNQSITSSVDLLH 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224099281|ref|XP_002311422.1| predicted protein [Populus trichocarpa] gi|222851242|gb|EEE88789.1| predicted protein [Populus trichocarpa]

 Score =  277 bits (709), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 147/201 (73%), Positives = 167/201 (83%), Gaps = 1/201 (0%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+PG++ GI Y    ++    PAN GMMQ +  P FH NRLL NL +S  PQ   E  T 
Sbjct: 1   MLPGELTGIHYIAPDQSLIPFPANFGMMQQSSIPAFHFNRLLNNLQSSSFPQPVREF-TP 59

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
           QSSSLSNNSTSDE+EE QL IIDERKQRRMISNRESARRSRMRKQ+HLDELW+ VVRLRT
Sbjct: 60  QSSSLSNNSTSDESEEHQLSIIDERKQRRMISNRESARRSRMRKQKHLDELWTQVVRLRT 119

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENHNLIDKLNHVSE HDRVLQENARL++EASDLRQM+T+LQ+ SPYT  +LRDL EVPCN
Sbjct: 120 ENHNLIDKLNHVSECHDRVLQENARLKKEASDLRQMITDLQIGSPYTATALRDLEEVPCN 179

Query: 181 TAHLRAESTNQSITNSVDLLH 201
           TAH+RAES+NQS+T+SVDLLH
Sbjct: 180 TAHVRAESSNQSVTSSVDLLH 200

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546989|ref|XP_002514552.1| Ocs element-binding factor, putative [Ricinus communis] gi|223546156|gb|EEF47658.1| Ocs element-binding factor, putative [Ricinus communis]

 Score =  265 bits (676), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 152/202 (75%), Positives = 170/202 (84%), Gaps = 3/202 (1%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANL-PNSLIPQQGHELMT 59
           M+PG++ GIQY LAPEN     ANLG+MQ    P FH NRL++N   N   PQ   +  T
Sbjct: 1   MLPGELTGIQY-LAPENPIPFSANLGLMQQTSMPTFHYNRLISNFYSNPSFPQPVQDF-T 58

Query: 60  SQSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLR 119
            QSSSLSNNSTSDEAEE QL IIDERKQRRMISNRESARRSRMRKQ+HLDELWS VVRLR
Sbjct: 59  QQSSSLSNNSTSDEAEENQLSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLR 118

Query: 120 TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPC 179
           TENHNLIDKLNHVSE HDRVLQENARL+EEASDLRQMLT+LQ+ SP+T ++LRDL +VPC
Sbjct: 119 TENHNLIDKLNHVSECHDRVLQENARLKEEASDLRQMLTDLQIGSPFTASALRDLEDVPC 178

Query: 180 NTAHLRAESTNQSITNSVDLLH 201
           NTAHLRAES+NQSI++SVDLLH
Sbjct: 179 NTAHLRAESSNQSISSSVDLLH 200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782835|emb|CAN76820.1| hypothetical protein VITISV_032595 [Vitis vinifera]

 Score =  256 bits (654), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 161/201 (80%), Gaps = 6/201 (2%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+PG+  GI +Y+APEN    PAN GM   N  P  H    L+NL  S IP   HE  T 
Sbjct: 1   MLPGEFTGI-HYMAPENPTPFPANFGMTYGNT-PTLHFGGYLSNLTXSQIPPI-HEF-TP 56

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
           QSSSLSNNSTSDEAEE QL IIDERKQRRMISNRESARRSRMRKQ+HLDELWS VVRLR 
Sbjct: 57  QSSSLSNNSTSDEAEEHQLSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRN 116

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENH+LIDKLNHVSE HDRVLQEN RL+EEASDLRQMLT+L++ SPYT  +LR+L  V CN
Sbjct: 117 ENHSLIDKLNHVSECHDRVLQENVRLKEEASDLRQMLTDLRIGSPYT--TLRELEGVSCN 174

Query: 181 TAHLRAESTNQSITNSVDLLH 201
           TAHLRAES+NQSIT+S+DLLH
Sbjct: 175 TAHLRAESSNQSITSSIDLLH 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425023|ref|XP_002269495.1| PREDICTED: uncharacterized protein LOC100258132 [Vitis vinifera] gi|297738226|emb|CBI27427.3| unnamed protein product [Vitis vinifera]

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 145/201 (72%), Positives = 161/201 (80%), Gaps = 6/201 (2%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+PG+  GI +Y+APEN    PAN GM   N  P  H    L+NL  S IP   HE  T 
Sbjct: 1   MLPGEFTGI-HYMAPENPTPFPANFGMTYDNT-PTLHFGGYLSNLTTSQIPPI-HEF-TP 56

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
           QSSSLSNNSTSDEAEE QL IIDERKQRRMISNRESARRSRMRKQ+HLDELWS VVRLR 
Sbjct: 57  QSSSLSNNSTSDEAEEHQLSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVVRLRN 116

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENH+LIDKLNHVSE HDRVLQEN RL+EEASDLRQMLT+L++ SPYT  +LR+L  V CN
Sbjct: 117 ENHSLIDKLNHVSECHDRVLQENVRLKEEASDLRQMLTDLRIGSPYT--TLRELEGVSCN 174

Query: 181 TAHLRAESTNQSITNSVDLLH 201
           TAHLRAES+NQSIT+S+DLLH
Sbjct: 175 TAHLRAESSNQSITSSIDLLH 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499972|ref|XP_003518809.1| PREDICTED: ocs element-binding factor 1-like [Glycine max]

 Score =  252 bits (643), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 128/202 (63%), Positives = 156/202 (77%), Gaps = 5/202 (2%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+P +I G+ +YLAPEN   +P N  ++Q +I PN HLN LL N PN   P  GHE +  
Sbjct: 1   MVPSEIRGV-HYLAPENPFLVPPNFSLLQNDI-PNLHLNTLLRNFPNCHYPPSGHEFVVP 58

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
            SS LSNNSTSDEA+E Q  IIDERK RRMISNRESARRSRMRKQ+HLDELWS VVRLRT
Sbjct: 59  PSSCLSNNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRT 118

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENH+LIDKLNHVSESHDRVLQENARL+EEASDLRQML ++Q+ + +   ++ DL ++PCN
Sbjct: 119 ENHSLIDKLNHVSESHDRVLQENARLKEEASDLRQMLADMQIGTSFA-CTMEDLEDLPCN 177

Query: 181 TAH-LRAESTNQSITNSVDLLH 201
           T+  L+ +  N+SIT   D++H
Sbjct: 178 TSQLLKPDPLNESIT-PADMIH 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434700|ref|XP_004135134.1| PREDICTED: ocs element-binding factor 1-like [Cucumis sativus]

 Score =  247 bits (631), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 137/203 (67%), Positives = 164/203 (80%), Gaps = 5/203 (2%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+PG+I+GIQ++ + EN+ Q P+N+ MMQ + Q   H N  L NLP S +P   HE +  
Sbjct: 1   MLPGEISGIQFFPS-ENSFQFPSNIDMMQNSFQTLHHFNGFLGNLPMSHVPHPSHEFL-K 58

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
           QSSS S NSTSD+AEEQQ  IIDERKQRRMISNRESARRSRMRKQ+HLDELWS V+RLRT
Sbjct: 59  QSSSFSYNSTSDDAEEQQKSIIDERKQRRMISNRESARRSRMRKQKHLDELWSQVLRLRT 118

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENH LIDKLNHVS++H++VL ENARL+EEASDLRQMLT+LQ+ SPYT   L  L ++PCN
Sbjct: 119 ENHKLIDKLNHVSDNHEKVLLENARLKEEASDLRQMLTDLQIGSPYT-PCLSILEDIPCN 177

Query: 181 TAHLRAESTN-QSITNSVD-LLH 201
           TAHLRAES++ QSI NS+D LLH
Sbjct: 178 TAHLRAESSSCQSIANSIDNLLH 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478335|ref|XP_004155288.1| PREDICTED: uncharacterized protein LOC101224302 [Cucumis sativus]

 Score =  244 bits (623), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 136/203 (66%), Positives = 162/203 (79%), Gaps = 5/203 (2%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+PG+I+GIQ++ + EN+ Q P+N+ MMQ + Q   H N  L NLP S +P   HE +  
Sbjct: 1   MLPGEISGIQFFPS-ENSFQFPSNIDMMQNSFQTLHHFNGFLGNLPMSHVPHPSHEFL-K 58

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
           QSSS S NSTSD+AEEQQ  IIDERKQRRMISNRESARRSRMRKQ+ LDELWS V+R RT
Sbjct: 59  QSSSFSYNSTSDDAEEQQKSIIDERKQRRMISNRESARRSRMRKQKRLDELWSQVLRFRT 118

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENH LIDKLNHVS++H++VL ENARL+EEASDLRQMLT+LQ+ SPYT   L  L +VPCN
Sbjct: 119 ENHKLIDKLNHVSDNHEKVLLENARLKEEASDLRQMLTDLQIGSPYT-PCLSILEDVPCN 177

Query: 181 TAHLRAESTN-QSITNSVD-LLH 201
           TAHLRAES++ QSI NS+D LLH
Sbjct: 178 TAHLRAESSSCQSIANSIDNLLH 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721340|ref|NP_001236950.1| bZIP transcription factor bZIP35 [Glycine max] gi|113367166|gb|ABI34640.1| bZIP transcription factor bZIP35 [Glycine max]

 Score =  242 bits (617), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 128/201 (63%), Positives = 157/201 (78%), Gaps = 4/201 (1%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+P +I G+ +YLAPEN   +P N  ++Q++I PN HLN LL+N PN   P  GHE +  
Sbjct: 1   MVPSEIRGV-HYLAPENPFLVPPNFSLLQSDI-PNLHLNTLLSNFPNCHFPPSGHEFVVP 58

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
            SS LS+NSTSDEA+E Q  IIDERK RRMISNRESARRSRMRKQ+HLDELWS VVRLRT
Sbjct: 59  PSSCLSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRT 118

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENHNLIDKLNHVSESHDRVLQENARL+EEAS LRQML ++Q+ + +   ++ DL ++PCN
Sbjct: 119 ENHNLIDKLNHVSESHDRVLQENARLKEEASALRQMLADMQIGTAFA-CTMEDLEDLPCN 177

Query: 181 TAHLRAESTNQSITNSVDLLH 201
           T+ L+ +  NQSIT   D++H
Sbjct: 178 TSQLKPDPLNQSIT-PADMIH 197

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13430400|gb|AAK25822.1|AF350505_1 bZip transcription factor [Phaseolus vulgaris]

 Score =  233 bits (593), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 121/201 (60%), Positives = 150/201 (74%), Gaps = 9/201 (4%)

Query: 1   MIPGDIAGIQYYLAPENAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMTS 60
           M+P +I G+ Y LAPEN   +P N G++Q +I PN HLN LL+N PN   P  G E +  
Sbjct: 1   MVPSEIRGVNY-LAPENPFLVPPNFGLLQNDI-PNLHLNTLLSNFPNCHFPPSGLEFVAP 58

Query: 61  QSSSLSNNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRT 120
            S  LS+NSTSDEA+E Q  IIDERK RRMISNRESARRSRMRKQ+HLDELWS VVRLRT
Sbjct: 59  HSC-LSSNSTSDEADEIQFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRT 117

Query: 121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCN 180
           ENHNLIDKLNH+S+SHDRVLQEN RL+EEASDLRQML ++Q+ + +   ++ +L ++PCN
Sbjct: 118 ENHNLIDKLNHMSDSHDRVLQENTRLKEEASDLRQMLADMQIGTSFA-CTMEELEDLPCN 176

Query: 181 TAHLRAESTNQSITNSVDLLH 201
               +   +NQ IT   D++H
Sbjct: 177 ----KPGPSNQLIT-PADMIH 192

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	201
TAIR|locus:2009932	196	bZIP58 "AT1G13600" [Arabidopsi	0.890	0.913	0.474	4.4e-36
TAIR|locus:2827461	166	bZIP48 "AT2G04038" [Arabidopsi	0.800	0.969	0.482	3.2e-33
TAIR|locus:2092595	173	bZIP42 "AT3G30530" [Arabidopsi	0.477	0.554	0.704	8.5e-33
TAIR|locus:2166650	165	bZIP43 "AT5G38800" [Arabidopsi	0.527	0.642	0.566	4.5e-27
TAIR|locus:2143191	186	bZIP3 "AT5G15830" [Arabidopsis	0.651	0.704	0.492	5.2e-26
TAIR|locus:2012413	138	bZIP "AT1G68880" [Arabidopsis	0.402	0.586	0.543	7.2e-20
TAIR|locus:2159325	206	bZIP70 "AT5G60830" [Arabidopsi	0.537	0.524	0.394	1.1e-16
TAIR|locus:2018411	173	bZIP44 "AT1G75390" [Arabidopsi	0.512	0.595	0.388	1.6e-13
TAIR|locus:2053124	171	bZIP2 "AT2G18160" [Arabidopsis	0.393	0.461	0.417	3.4e-13
TAIR|locus:2096024	146	BZIP53 "AT3G62420" [Arabidopsi	0.482	0.664	0.382	3.4e-13

TAIR|locus:2009932 bZIP58 "AT1G13600" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 94/198 (47%), Positives = 124/198 (62%)

Query:     2 IPGDIAGIQYYLAPENAA-QLPA------NLGMMQANIQPNFHLNRLLANLPNSLIPQQG 54
             IP ++ G  +YL P+    Q P       N+     +    +HLN L+ N  N      G
Sbjct:     4 IPAELTGYFHYLPPDKYNNQTPIMESEYFNMPSSPTSCSSFYHLNGLINN-NNYSSSSNG 62

Query:    55 HELMXXXXXXXXXXXXXDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSH 114
              +LM             DE + QQ  +IDERKQRRMISNRESARRSRMRKQRHLDELWS 
Sbjct:    63 QDLMTSNNSTS------DE-DHQQSMVIDERKQRRMISNRESARRSRMRKQRHLDELWSQ 115

Query:   115 VVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDL 174
             V+RLRT+NH L+DKLN VSESH+  L+ENA+L+EE SDLRQ+++E++  +   N+ LR+L
Sbjct:   116 VIRLRTDNHCLMDKLNRVSESHELALKENAKLKEETSDLRQLISEIKSHNEDDNSFLREL 175

Query:   175 GEVPCNTAHLRAESTNQS 192
              +   N+   R++S NQS
Sbjct:   176 EDSISNS---RSDS-NQS 189

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2827461 bZIP48 "AT2G04038" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 84/174 (48%), Positives = 110/174 (63%)

Query:     1 MIPGDIAGIQYYLAPE-NAAQLPANLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMX 59
             MIP +I G   YL+PE N   +P++          N+ LN L+ N  N        +LM 
Sbjct:     1 MIPAEINGYFQYLSPEYNVINMPSS-----PTSSLNY-LNDLIINNNNYSSSSNSQDLMI 54

Query:    60 XXXXXXXXXXXXDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLR 119
                         DE   Q + ++DERKQRRM+SNRESARRSRMRKQRHLDELWS V+RLR
Sbjct:    55 SNNSTS------DEDHHQSIMVLDERKQRRMLSNRESARRSRMRKQRHLDELWSQVIRLR 108

Query:   120 TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRD 173
              EN+ LIDKLN VSE+ + VL+EN++L+EEASDLRQ++ EL+ +    N+  R+
Sbjct:   109 NENNCLIDKLNRVSETQNCVLKENSKLKEEASDLRQLVCELKSNKNNNNSFPRE 162

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2092595 bZIP42 "AT3G30530" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 69/98 (70%), Positives = 87/98 (88%)

Query:    72 DEAEEQQLR--IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKL 129
             DEAEEQQ    II+ERKQRRMISNRESARRSRMRKQRHLDELWS V+ LR ENH L+DKL
Sbjct:    66 DEAEEQQTNNNIINERKQRRMISNRESARRSRMRKQRHLDELWSQVMWLRIENHQLLDKL 125

Query:   130 NHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYT 167
             N++SESHD+VLQENA+L+EE  +L+Q+++++Q+ SP++
Sbjct:   126 NNLSESHDKVLQENAQLKEETFELKQVISDMQIQSPFS 163

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2166650 bZIP43 "AT5G38800" [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 60/106 (56%), Positives = 82/106 (77%)

Query:    72 DEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNH 131
             DEAEE    II+ERKQ+R ISNRESARRSRMRKQR +DELWS V+ LR ENH L+ KLN 
Sbjct:    59 DEAEENHKEIINERKQKRKISNRESARRSRMRKQRQVDELWSQVMWLRDENHQLLRKLNC 118

Query:   132 VSESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLGEV 177
             V ES ++V++EN +L+EE ++L+QM++++QL +    + +RD  +V
Sbjct:   119 VLESQEKVIEENVQLKEETTELKQMISDMQLQNQSPFSCIRDDDDV 164

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2143191 bZIP3 "AT5G15830" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 68/138 (49%), Positives = 88/138 (63%)

Query:    24 NLGMMQANIQPNFHLNRLLANLPNSLIPQQGHELMXXXXXXXXXXXXXDEAEEQQLRIID 83
             NL     N+ P+ + N L     N L   Q  EL              D  EE  + +I+
Sbjct:    20 NLNNYYNNLNPSTNNNNL-----NILQYPQIQELNLQSPVSNNSTTSDDATEE--IFVIN 72

Query:    84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143
             ERKQRRM+SNRESARRSRMRKQRHLDEL S V  LR+ENH L+DKLN VS+++D V+QEN
Sbjct:    73 ERKQRRMVSNRESARRSRMRKQRHLDELLSQVAWLRSENHQLLDKLNQVSDNNDLVIQEN 132

Query:   144 ARLREEASDLRQMLTELQ 161
             + L+EE  +LRQ++T ++
Sbjct:   133 SSLKEENLELRQVITSMK 150

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

TAIR|locus:2012413 bZIP "AT1G68880" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 7.2e-20, P = 7.2e-20
 Identities = 44/81 (54%), Positives = 66/81 (81%)

Query:    83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
             +ERK+RR +SNRESARRSRMRKQRH++ELWS +V+L  +N +L+D+L+   E +++V++E
Sbjct:    45 NERKRRRKVSNRESARRSRMRKQRHMEELWSMLVQLINKNKSLVDELSQARECYEKVIEE 104

Query:   143 NARLREEASDLRQMLTELQLS 163
             N +LREE S  R+M+ E+ L+
Sbjct:   105 NMKLREENSKSRKMIGEIGLN 125

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2159325 bZIP70 "AT5G60830" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/114 (39%), Positives = 75/114 (65%)

Query:    83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
             +ER+ RRM+SNRESARRSRMRK++ ++EL   V +L   NH+L +K+ ++ ES+ ++LQE
Sbjct:    69 EERRARRMVSNRESARRSRMRKKKQIEELQQQVEQLMMLNHHLSEKVINLLESNHQILQE 128

Query:   143 NARLREEASDLRQMLTELQLSSPYTNASLRDLGEVPCNTAHLRAESTNQSITNS 196
             N++L+E+ S    ++ ++ L      +++ D      N  +LR E +N+  TNS
Sbjct:   129 NSQLKEKVSSFHLLMADVLLPMRNAESNINDR-----NVNYLRGEPSNRP-TNS 176

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

TAIR|locus:2018411 bZIP44 "AT1G75390" [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
 Identities = 40/103 (38%), Positives = 60/103 (58%)

Query:    73 EAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV 132
             E++ +Q  +IDERK++R  SNRESARRSRMRKQ+HLD+L + V  LR EN  ++  +   
Sbjct:    29 ESDLRQRDLIDERKRKRKQSNRESARRSRMRKQKHLDDLTAQVTHLRKENAQIVAGIAVT 88

Query:   133 SESHDRVLQENARLREEASDLRQMLTELQLSSPYTNASLRDLG 175
             ++ +  +  EN  LR +  +L   L  L     +  +S    G
Sbjct:    89 TQHYVTIEAENDILRAQVLELNHRLQSLNEIVDFVESSSSGFG 131

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0009845 "seed germination" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IDA

TAIR|locus:2053124 bZIP2 "AT2G18160" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 33/79 (41%), Positives = 54/79 (68%)

Query:    82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQ 141
             +DERK++RM+SNRESARRSRMRKQ+H+D+L + + +L  +N  +++ L   S+ + ++  
Sbjct:    28 VDERKRKRMLSNRESARRSRMRKQKHVDDLTAQINQLSNDNRQILNSLTVTSQLYMKIQA 87

Query:   142 ENARLREEASDLRQMLTEL 160
             EN+ L  +  +L   L  L
Sbjct:    88 ENSVLTAQMEELSTRLQSL 106

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

TAIR|locus:2096024 BZIP53 "AT3G62420" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-13, P = 3.4e-13
 Identities = 39/102 (38%), Positives = 66/102 (64%)

Query:    81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140
             + DERK++RMISNRESARRSRMRKQ+ L +L + V  L+ +N  + ++++  S+ +  + 
Sbjct:    21 VTDERKRKRMISNRESARRSRMRKQKQLGDLINEVTLLKNDNAKITEQVDEASKKYIEME 80

Query:   141 QENARLREEASDL----RQMLTELQLSSPYTNASLRDLGEVP 178
              +N  LR +AS+L    R + + L++    +  +L D+ E+P
Sbjct:    81 SKNNVLRAQASELTDRLRSLNSVLEMVEEISGQAL-DIPEIP 121

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0043565 "sequence-specific DNA binding" evidence=IDA

GO:2000693 "positive regulation of seed maturation" evidence=IDA

GO:0009267 "cellular response to starvation" evidence=IEP

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	201
smart00338	65	smart00338, BRLZ, basic region leucin zipper	1e-11
pfam00170	64	pfam00170, bZIP_1, bZIP transcription factor	1e-07
pfam07716	54	pfam07716, bZIP_2, Basic region leucine zipper	2e-04
cd12193	54	cd12193, B_zip1, basic leucine zipper DNA-binding	0.001

>gnl|CDD|197664 smart00338, BRLZ, basic region leucin zipper

 Score = 57.2 bits (139), Expect = 1e-11
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 83  DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
           DE+++RR   NRE+ARRSR RK+  ++EL   V +L  EN  L  ++  +    +++  E
Sbjct: 3   DEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSE 62

Query: 143 NAR 145
              
Sbjct: 63  LEE 65

Length = 65

>gnl|CDD|201054 pfam00170, bZIP_1, bZIP transcription factor

 Score = 46.5 bits (111), Expect = 1e-07
 Identities = 22/59 (37%), Positives = 36/59 (61%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143
           +++RR   NRE+ARRSR+RK+ +++EL   V  L  EN  L  +L  + +   ++  EN
Sbjct: 5   KRERRRQKNREAARRSRLRKKAYIEELEEKVKELEAENKTLRSELERLKKECAKLKSEN 63

The Pfam entry includes the basic region and the leucine zipper region. Length = 64

>gnl|CDD|203738 pfam07716, bZIP_2, Basic region leucine zipper

 Score = 38.0 bits (89), Expect = 2e-04
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 83  DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKL 129
           DE + RR   N E+ARRSR +K++  +EL   V  L  EN  L  K+
Sbjct: 3   DEYRDRRR-RNNEAARRSREKKKQREEELEERVKELEEENAQLRQKV 48

Length = 54

>gnl|CDD|213400 cd12193, B_zip1, basic leucine zipper DNA-binding and multimerization region of GCN4 and related proteins

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134
            + R+   NRE+ARRSR RK   + +L   V  L +EN +L D+++ + +
Sbjct: 2   PRARKRARNREAARRSRARKMERMKQLEDKVEELTSENSDLEDEVDRLKK 51

Basic leucine zipper (bZIP) transcription factors act in networks of homo- and hetero-dimers in the regulation in a diverse set of cellular pathways. Classical leucine zippers have alpha helices with leucine residues 7 amino acids apart, which stabilize dimerization with a parallel leucine zipper domain. Dimerization creates a pair of basic regions that bind DNA and undergo conformational change. GCN4 was identified in Saccharomyces cerevisiae from mutations in a deficiency in activation with the general amino acid control pathway. GCN4 encodes a trans-activator of amino acid biosynthetic genes containing 2 acidic activation domains and a C-terminal bZIP domain, comprised of a basic alpha-helical DNA-binding region and a coiled-coil dimerization region. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	201
smart00338	65	BRLZ basic region leucin zipper.	99.44
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	99.42
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	99.4
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	99.27
PF07716	54	bZIP_2: Basic region leucine zipper; InterPro: IPR	99.16
KOG0709	472	consensus CREB/ATF family transcription factor [Tr	98.97
KOG3584	348	consensus cAMP response element binding protein an	98.94
PF03131	92	bZIP_Maf: bZIP Maf transcription factor; InterPro:	98.17
KOG0837	279	consensus Transcriptional activator of the JUN fam	97.93
KOG4571	294	consensus Activating transcription factor 4 [Trans	97.91
KOG4196	135	consensus bZIP transcription factor MafK [Transcri	97.61
KOG3119	269	consensus Basic region leucine zipper transcriptio	97.39
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.54
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.52
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.5
KOG3863	604	consensus bZIP transcription factor NRF1 [Transcri	96.43
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	96.26
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	96.2
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	96.16
PRK13169	110	DNA replication intiation control protein YabA; Re	96.16
PRK13169	110	DNA replication intiation control protein YabA; Re	96.07
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	95.96
PRK15422	79	septal ring assembly protein ZapB; Provisional	95.94
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	95.87
COG4467	114	Regulator of replication initiation timing [Replic	95.34
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	95.23
PF07989	75	Microtub_assoc: Microtubule associated; InterPro:	94.86
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	94.85
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.83
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	94.74
PRK10884	206	SH3 domain-containing protein; Provisional	94.69
PRK13729	475	conjugal transfer pilus assembly protein TraB; Pro	94.27
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	93.66
PF14662	193	CCDC155: Coiled-coil region of CCDC155	93.65
KOG4005	292	consensus Transcription factor XBP-1 [Transcriptio	93.37
PRK10884	206	SH3 domain-containing protein; Provisional	93.22
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	93.19
PRK02119	73	hypothetical protein; Provisional	93.18
PRK15422	79	septal ring assembly protein ZapB; Provisional	93.16
PRK04406	75	hypothetical protein; Provisional	93.1
COG4026	290	Uncharacterized protein containing TOPRIM domain,	93.1
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	92.92
PF09304	107	Cortex-I_coil: Cortexillin I, coiled coil; InterPr	92.84
COG4467	114	Regulator of replication initiation timing [Replic	92.83
PRK04325	74	hypothetical protein; Provisional	92.5
TIGR00219	283	mreC rod shape-determining protein MreC. MreC (mur	92.37
smart00340	44	HALZ homeobox associated leucin zipper.	92.37
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	92.17
PF09738	302	DUF2051: Double stranded RNA binding protein (DUF2	92.05
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	91.91
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	91.87
PRK00846	77	hypothetical protein; Provisional	91.81
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	91.54
PRK02793	72	phi X174 lysis protein; Provisional	91.31
PF13747	89	DUF4164: Domain of unknown function (DUF4164)	91.24
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	91.23
PF15294	278	Leu_zip: Leucine zipper	90.93
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	90.86
PF04880	166	NUDE_C: NUDE protein, C-terminal conserved region;	90.79
PF12808	52	Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2	90.67
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.67
TIGR03752	472	conj_TIGR03752 integrating conjugative element pro	90.45
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	90.23
PF14197	69	Cep57_CLD_2: Centrosome localisation domain of PPC	90.13
PRK11637	428	AmiB activator; Provisional	90.05
PRK00295	68	hypothetical protein; Provisional	90.0
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	89.5
PF10186	302	Atg14: UV radiation resistance protein and autopha	89.13
PRK02119	73	hypothetical protein; Provisional	88.59
PRK13922	276	rod shape-determining protein MreC; Provisional	88.57
PF08647	96	BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR01395	88.55
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	88.54
PRK11637	428	AmiB activator; Provisional	88.14
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	88.01
PF11180	192	DUF2968: Protein of unknown function (DUF2968); In	87.83
PF12711	86	Kinesin-relat_1: Kinesin motor; InterPro: IPR02465	86.95
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	86.9
PF15058	200	Speriolin_N: Speriolin N terminus	86.79
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	86.79
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	86.71
PF10224	80	DUF2205: Predicted coiled-coil protein (DUF2205);	86.61
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	86.44
COG3883	265	Uncharacterized protein conserved in bacteria [Fun	86.41
PRK09039	343	hypothetical protein; Validated	86.24
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	86.13
PF14662	193	CCDC155: Coiled-coil region of CCDC155	86.06
PRK02793	72	phi X174 lysis protein; Provisional	85.83
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	85.68
PRK09039	343	hypothetical protein; Validated	85.68
PRK00888	105	ftsB cell division protein FtsB; Reviewed	85.63
smart00338	65	BRLZ basic region leucin zipper.	85.61
PRK00295	68	hypothetical protein; Provisional	85.55
PHA02562	562	46 endonuclease subunit; Provisional	85.52
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	85.41
PF08172	248	CASP_C: CASP C terminal; InterPro: IPR012955 This	85.36
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	85.29
KOG1962	216	consensus B-cell receptor-associated protein and r	85.12
KOG1853	333	consensus LIS1-interacting protein NUDE [Cytoskele	85.07
PF04111	314	APG6: Autophagy protein Apg6; InterPro: IPR007243	85.06
PRK00888	105	ftsB cell division protein FtsB; Reviewed	84.81
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.55
PF05278	269	PEARLI-4: Arabidopsis phospholipase-like protein (	84.52
PF07407	420	Seadorna_VP6: Seadornavirus VP6 protein; InterPro:	84.38
KOG3119	269	consensus Basic region leucine zipper transcriptio	84.34
KOG1318	411	consensus Helix loop helix transcription factor EB	84.18
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	84.05
PF05266	190	DUF724: Protein of unknown function (DUF724); Inte	84.04
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	83.92
PF15035	182	Rootletin: Ciliary rootlet component, centrosome c	83.88
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	83.76
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	83.67
PRK00736	68	hypothetical protein; Provisional	83.56
PRK04325	74	hypothetical protein; Provisional	83.52
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	83.38
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	83.36
COG4026	290	Uncharacterized protein containing TOPRIM domain,	83.31
PF04899	70	MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 Th	83.12
PF10805	106	DUF2730: Protein of unknown function (DUF2730); In	82.9
KOG1962	216	consensus B-cell receptor-associated protein and r	82.87
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	82.85
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	82.82
PRK04406	75	hypothetical protein; Provisional	82.54
TIGR02209	85	ftsL_broad cell division protein FtsL. This model	82.53
KOG0982	502	consensus Centrosomal protein Nuf [Cell cycle cont	82.41
PF09744	158	Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; Inte	82.41
KOG1414	395	consensus Transcriptional activator FOSB/c-Fos and	82.13
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	82.05
COG4942	420	Membrane-bound metallopeptidase [Cell division and	81.65
PRK10803	263	tol-pal system protein YbgF; Provisional	81.54
COG4942	420	Membrane-bound metallopeptidase [Cell division and	81.12
KOG4343	655	consensus bZIP transcription factor ATF6 [Transcri	81.11
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	81.11
KOG2077	832	consensus JNK/SAPK-associated protein-1 [Signal tr	80.97
PF06785	401	UPF0242: Uncharacterised protein family (UPF0242);	80.72
PRK00736	68	hypothetical protein; Provisional	80.51
KOG3650	120	consensus Predicted coiled-coil protein [General f	80.17

>smart00338 BRLZ basic region leucin zipper

Probab=99.44  E-value=9.3e-13  Score=93.01  Aligned_cols=62  Identities=35%  Similarity=0.516  Sum_probs=54.6

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN  143 (201)
Q Consensus        82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN  143 (201)
                      .|+|+.||+++||+||++||.||++|+.+|+.+|..|..+|..|..++..|..++..+..+|
T Consensus         2 ~~~k~~rR~~rNR~aA~~~R~rKk~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338        2 EDEKRRRRRERNREAARRSRERKKAEIEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46799999999999999999999999999999999999999999999987766555555444

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=99.42  E-value=1.5e-12  Score=114.67  Aligned_cols=82  Identities=30%  Similarity=0.401  Sum_probs=79.3

Q ss_pred             cchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           80 RIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE  159 (201)
Q Consensus        80 ~~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~  159 (201)
                      -.-|||-+|||++||.+|+.+|.|||++++++|.+|..|..||+.|+.+++.|++..+.|..+|.+|+.++..+++.|..
T Consensus        64 LS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~  143 (292)
T KOG4005|consen   64 LSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAE  143 (292)
T ss_pred             cCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hh
Q 043159          160 LQ  161 (201)
Q Consensus       160 l~  161 (201)
                      ++
T Consensus       144 ~~  145 (292)
T KOG4005|consen  144 LK  145 (292)
T ss_pred             hH
Confidence            87

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=99.40  E-value=2.6e-12  Score=90.55  Aligned_cols=62  Identities=35%  Similarity=0.544  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA  144 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~  144 (201)
                      +.++.+|+++||+||++||.||++++.+|+.+|..|..+|..|..++..|...+..|..+|.
T Consensus         3 ~~k~~~rr~rNR~AAr~~R~RKk~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~~   64 (64)
T PF00170_consen    3 EDKRERRRERNREAARRSRQRKKQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSENH   64 (64)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            56789999999999999999999999999999999999999999999999888888888773

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=99.27  E-value=7.9e-12  Score=119.65  Aligned_cols=70  Identities=33%  Similarity=0.400  Sum_probs=65.4

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      +.--||+.|||+|||||..||+|||+|+..||.++..|..||+.|+.++..|++++..++.||..||--.
T Consensus       277 ~kv~krqQRmIKNResA~~SRkKKKEy~~~Le~rLq~ll~Ene~Lk~ENatLk~qL~~l~~En~~~kvps  346 (655)
T KOG4343|consen  277 IKVLKRQQRMIKNRESACQSRKKKKEYMLGLEARLQALLSENEQLKKENATLKRQLDELVSENQRLKVPS  346 (655)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcCcccccCC
Confidence            4456788899999999999999999999999999999999999999999999999999999999997543

>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization

Probab=99.16  E-value=2.7e-10  Score=78.30  Aligned_cols=52  Identities=38%  Similarity=0.564  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus        82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      .++++.||. +||+||++||.||++++.+|+.+|..|..+|..|..++..|..
T Consensus         2 ~~~~~~rR~-rNr~AA~r~R~rkk~~~~~le~~~~~L~~en~~L~~~i~~L~~   53 (54)
T PF07716_consen    2 DEEKRERRE-RNREAARRSRQRKKQREEELEQEVQELEEENEQLRQEIAQLER   53 (54)
T ss_dssp             CHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            367788888 9999999999999999999999999999999999988887754

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....

>KOG0709 consensus CREB/ATF family transcription factor [Transcription]

Probab=98.97  E-value=9.8e-10  Score=103.79  Aligned_cols=72  Identities=28%  Similarity=0.378  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .-||.||||+|++||+.||+|||.|++.||.+|.....||++|.+++..       ++.+|..|-+++.+|+.++....
T Consensus       249 iLKrvRRKIrNK~SAQESRrkKkeYid~LE~rv~~~taeNqeL~kkV~~-------Le~~N~sLl~qL~klQt~v~q~a  320 (472)
T KOG0709|consen  249 ILKRVRRKIRNKRSAQESRRKKKEYIDGLESRVSAFTAENQELQKKVEE-------LELSNRSLLAQLKKLQTLVIQVA  320 (472)
T ss_pred             HHHHHHHHHHhhhhhHHHHHhHhhHHHHHhhhhhhcccCcHHHHHHHHH-------HhhccHHHHHHHHHHHHHHhhcc
Confidence            4478999999999999999999999999999999999999999888775       57788888888888887775543

>KOG3584 consensus cAMP response element binding protein and related transcription factors [Transcription]

Probab=98.94  E-value=2.5e-09  Score=96.68  Aligned_cols=53  Identities=30%  Similarity=0.488  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES  135 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~  135 (201)
                      ..||+-|+.||||+||.+|+|||+|+.-||.+|..|+.+|..|..+|..|++-
T Consensus       289 trKRevRLmKNREAARECRRKKKEYVKCLENRVAVLENQNKaLIEELKtLKeL  341 (348)
T KOG3584|consen  289 TRKREVRLMKNREAARECRRKKKEYVKCLENRVAVLENQNKALIEELKTLKEL  341 (348)
T ss_pred             hhHHHHHHHhhHHHHHHHHHhHhHHHHHHHhHHHHHhcccHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999988763

>PF03131 bZIP_Maf: bZIP Maf transcription factor; InterPro: IPR004826 There are several different types of Maf transcription factors with different roles in the cell

Probab=98.17  E-value=2.6e-08  Score=75.15  Aligned_cols=56  Identities=29%  Similarity=0.455  Sum_probs=46.5

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH  136 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~  136 (201)
                      ..+-|..||.++||.+|+.||.||..++.+|+.++..|+.+...|..++..+....
T Consensus        26 ~~~lK~~RRr~KNR~~A~~cR~rk~~~~~~Le~e~~~l~~~~~~L~~e~~~l~~e~   81 (92)
T PF03131_consen   26 IAELKQRRRRLKNRGYAQNCRKRKLDQIEELEEEIEQLRQEIEQLQQELSELRQER   81 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34668899999999999999999999999999999988887777766666554433

MafG and MafH are small Mafs which lack a putative transactivation domain. They behave as transcriptional repressors when they dimerize among themselves. However they also serve as transcriptional activators by dimerizing with other (usually larger) basic-zipper proteins and recruiting them to specific DNA-binding sites. Maf transcription factors contain a conserved basic region leucine zipper (bZIP) domain, which mediates their dimerization and DNA binding property. Neural retina-specific leucine zipper proteins also belong to this family. Together with the basic region, the Maf extended homology region (EHR), conserved only within the Maf family, defines the DNA binding specific to Mafs. This structure enables Mafs to make a broader area of contact with DNA and to recognise longer DNA sequences. In particular, the two residues at the beginning of helix H2 are positioned to recognise the flanking region []. Small Maf proteins heterodimerize with Fos and may act as competitive repressors of the NF2-E2 transcription factor. In mouse, Maf1 may play an early role in axial patterning. Defects in these proteins are a cause of autosomal dominant retinitis pigmentosa. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2KZ5_A 3A5T_A 1K1V_A 1SKN_P 2WT7_B 2WTY_B.

>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]

Probab=97.93  E-value=3.4e-05  Score=69.10  Aligned_cols=47  Identities=30%  Similarity=0.472  Sum_probs=40.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus        87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      .|..++|||+|.+||.||.+||..||.+|..|..+|..|...+..|.
T Consensus       208 eRkrlrnreaa~Kcr~rkLdrisrLEdkv~~lk~~n~~L~~~l~~l~  254 (279)
T KOG0837|consen  208 ERKRLRNREAASKCRKRKLDRISRLEDKVKTLKIYNRDLASELSKLK  254 (279)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHH
Confidence            44478999999999999999999999999999999988777666443

>KOG4571 consensus Activating transcription factor 4 [Transcription]

Probab=97.91  E-value=6.4e-05  Score=68.11  Aligned_cols=55  Identities=25%  Similarity=0.355  Sum_probs=45.0

Q ss_pred             chHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           81 IIDERKQRR-MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES  135 (201)
Q Consensus        81 ~~deRR~RR-~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~  135 (201)
                      ..++|+.|| .+.|..+|-|.|+||++..+.|+.++..|+.+|++|+.++..+.++
T Consensus       222 ~~~~~~~~rkr~qnk~AAtRYRqKkRae~E~l~ge~~~Le~rN~~LK~qa~~lerE  277 (294)
T KOG4571|consen  222 KTPEKKLRRKRQQNKAAATRYRQKKRAEKEALLGELEGLEKRNEELKDQASELERE  277 (294)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666555 4556666999999999999999999999999999999988865543

>KOG4196 consensus bZIP transcription factor MafK [Transcription]

Probab=97.61  E-value=0.0008  Score=54.91  Aligned_cols=68  Identities=26%  Similarity=0.396  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +--|.+||-++||--|.-+|.|+-.+-.+||.+-..|.++...              |..||.+++.++..++.++..+.
T Consensus        50 vrlKQrRRTLKNRGYA~sCR~KRv~Qk~eLE~~k~~L~qqv~~--------------L~~e~s~~~~E~da~k~k~e~l~  115 (135)
T KOG4196|consen   50 VRLKQRRRTLKNRGYAQSCRVKRVQQKHELEKEKAELQQQVEK--------------LKEENSRLRRELDAYKSKYEALQ  115 (135)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3346788999999999999999999888888776655554443              45577777778888888887777


Q ss_pred             cC
Q 043159          162 LS  163 (201)
Q Consensus       162 ~~  163 (201)
                      ..
T Consensus       116 ~~  117 (135)
T KOG4196|consen  116 NS  117 (135)
T ss_pred             hh
Confidence            43

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=97.39  E-value=0.00077  Score=59.96  Aligned_cols=51  Identities=27%  Similarity=0.419  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      +.+=..|..+|=++|||||.+.+...++++.+|..|+.||..|+.++..|+
T Consensus       192 ~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~  242 (269)
T KOG3119|consen  192 DPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLK  242 (269)
T ss_pred             CHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445666899999999999999999999999999999998887766543

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.54  E-value=0.018  Score=45.23  Aligned_cols=53  Identities=34%  Similarity=0.542  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      +|-.++..|+..-..|..+++.|+.....|..||..|+-+...||.+|..+..
T Consensus         5 ~l~~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    5 ELFDRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455666666666667777777777777777888888888888888877653

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.52  E-value=0.036  Score=40.74  Aligned_cols=54  Identities=28%  Similarity=0.457  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          107 HLDELWSHVVR-------LRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       107 ~l~eLe~qV~~-------L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      -++.|+.+|..       |+.++..|+.++..+......|..||..|+.+-.....+|..+
T Consensus         5 ~l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen    5 LLEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666655       4445555555555555556677777777777766666666543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.50  E-value=0.03  Score=40.68  Aligned_cols=52  Identities=19%  Similarity=0.164  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ..|+.+|++|-..-++|+.++..|.++...+..|+..|.++...-|.+|..|
T Consensus         3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEam   54 (65)
T TIGR02449         3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAM   54 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444455555555555555555554444

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]

Probab=96.43  E-value=0.0072  Score=59.62  Aligned_cols=69  Identities=23%  Similarity=0.298  Sum_probs=54.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      |=.||.=+||.||+++|+||-.-|..||.+|..|+.+.++|+++-..+..       +=.+++.++..|-+.+...
T Consensus       490 rDIRRRgKNkvAAQnCRKRKLd~I~nLE~ev~~l~~eKeqLl~Er~~~d~-------~L~~~kqqls~L~~~Vf~~  558 (604)
T KOG3863|consen  490 RDIRRRGKNKVAAQNCRKRKLDCILNLEDEVEKLQKEKEQLLRERDELDS-------TLGVMKQQLSELYQEVFQQ  558 (604)
T ss_pred             hccccccccchhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999999999999998887665433       3345566677766655443

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=96.26  E-value=0.028  Score=44.16  Aligned_cols=50  Identities=32%  Similarity=0.406  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      ..+.+|+.++..|-.+-..|+..+..|.++...|..||..||..+.++.+
T Consensus         8 ~~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~   57 (107)
T PF06156_consen    8 DRLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ   57 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46889999999999999999999999999999999999999999999877

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=96.20  E-value=0.059  Score=39.16  Aligned_cols=56  Identities=21%  Similarity=0.340  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +.++.|-..+.+|+.||..|+.++..+...-..+...|..=+.++.++-.+|..|.
T Consensus         7 ~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le   62 (65)
T TIGR02449         7 AQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE   62 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            56889999999999999999999999999999999999999999999999998875

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=96.16  E-value=0.078  Score=38.98  Aligned_cols=53  Identities=19%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .-+.-|..+|+.|+.+|..|..+...|...+..+..|=.....++..|=.+|.
T Consensus        18 eti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~   70 (72)
T PF06005_consen   18 ETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKLE   70 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34566777777777777777777777777777777776666666666555543

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.16  E-value=0.039  Score=43.68  Aligned_cols=51  Identities=29%  Similarity=0.432  Sum_probs=33.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +|=.+|..|+..-..|..+++.|+.....+..||..|+.+-..||.+|..+
T Consensus         5 elfd~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          5 EIFDALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344555666666666666666666666677777777777777777777765

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=96.07  E-value=0.038  Score=43.75  Aligned_cols=50  Identities=28%  Similarity=0.316  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      ..+..|+.++..+-.+-..|+..+..|.+++..|..||..||..+.++..
T Consensus         8 d~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~~~   57 (110)
T PRK13169          8 DALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEELEA   57 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            46889999999999999999999999999999999999999999999844

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=0.067  Score=39.91  Aligned_cols=54  Identities=20%  Similarity=0.361  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +.-|.-+|+.|+..|..|..+...++.....|+.||..|+.+-...+.+|..+-
T Consensus        20 I~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsLL   73 (79)
T COG3074          20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344666888999999999999999999999999999999999998888887764

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=95.94  E-value=0.066  Score=40.38  Aligned_cols=53  Identities=19%  Similarity=0.339  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .-|.-+|+.|+.+|..|..++..+......|..||..|+.+...+..+|..|=
T Consensus        21 ~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~LL   73 (79)
T PRK15422         21 TLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   73 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455667777777777777777777777789999999999988888887663

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=95.87  E-value=0.036  Score=37.38  Aligned_cols=42  Identities=24%  Similarity=0.420  Sum_probs=34.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      +|+.+-..|+...+.|...++.|..||..|++++..|..+|.
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            466677778888888888888888899999999988887764

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=95.34  E-value=0.099  Score=41.72  Aligned_cols=50  Identities=28%  Similarity=0.413  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE  159 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~  159 (201)
                      ++=.+|..|+...-.|.++++.+++.+..+..||..|+-+...||.+|..
T Consensus         5 eiFd~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           5 EIFDQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            34456667777777778888888888888999999999999999999887

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=95.23  E-value=0.26  Score=35.94  Aligned_cols=56  Identities=29%  Similarity=0.353  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +.+++-+..++.....+|..|..+-.....++...-.+|..|++++..|+..|...
T Consensus        11 r~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~   66 (69)
T PF14197_consen   11 RNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL   66 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677788888888888888888887777778888888888888888888877653

>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division []

Probab=94.86  E-value=0.26  Score=36.40  Aligned_cols=54  Identities=30%  Similarity=0.415  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHD--------RVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~--------~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +.+.+.+++.|+.||=.|+-++-.|.+...        .+..||..|+.++..|++.|...+
T Consensus         2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~   63 (75)
T PF07989_consen    2 LREQEEQIDKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKK   63 (75)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999999998887755        468899999999999998887765

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=94.85  E-value=0.89  Score=38.22  Aligned_cols=72  Identities=19%  Similarity=0.141  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus        84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      .++.+.....+.+-+.-.......+.++..-+..|..|...|.-++..+.+++..+..||..|-.+.++...
T Consensus       115 ~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k~  186 (194)
T PF08614_consen  115 ERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRKA  186 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555566666777777777777777777777777777788888888877777665443

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.83  E-value=1  Score=44.48  Aligned_cols=77  Identities=17%  Similarity=0.321  Sum_probs=59.2

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      |....+++-..........-+.+++.|+.++...+.++..|..+...+......+..|+..|..+..+++.++..+.
T Consensus       150 kE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~ri~~LE  226 (546)
T PF07888_consen  150 KEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQRIRELE  226 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445667777777777777888888888888888888888888888887777888888888877777777776665

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=94.74  E-value=0.26  Score=41.65  Aligned_cols=47  Identities=19%  Similarity=0.289  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ....+..||..|..++..|+.++..|..||..|..++..+..-...|
T Consensus        98 ~~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L  144 (161)
T TIGR02894        98 SDQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTL  144 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888888888888888877776655544

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.69  E-value=0.37  Score=41.69  Aligned_cols=43  Identities=16%  Similarity=0.126  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE  148 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra  148 (201)
                      +.+++++.++..|+.+|++|..++..++.+.+.+.++|..++.
T Consensus       125 ~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~  167 (206)
T PRK10884        125 QKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQR  167 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555444444444444444443

>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional

Probab=94.27  E-value=0.15  Score=49.38  Aligned_cols=54  Identities=19%  Similarity=0.146  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      +..+.+||.+++.|+.|.+.+.++...+.+++..++.||..|++++..+...+.
T Consensus        75 Q~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~~  128 (475)
T PRK13729         75 QVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANPV  128 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence            447889999999999999999999999999999999999999999976665543

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=93.66  E-value=2.4  Score=33.95  Aligned_cols=77  Identities=18%  Similarity=0.283  Sum_probs=58.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ....|=..-||..-....++...++.|...+..|+.++..+..++..+..+...+..++..+...+...+..+..+.
T Consensus        45 ~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk  121 (151)
T PF11559_consen   45 QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK  121 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667788888888888888999999998888888888888888777777777777666666666665555554

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=93.65  E-value=0.44  Score=41.29  Aligned_cols=54  Identities=35%  Similarity=0.444  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..+|-..|+.|+.-|+.|..++..|......++..|+.|..++.+|+..+..++
T Consensus         3 t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Q   56 (193)
T PF14662_consen    3 TSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQ   56 (193)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            357778888899999999999998888888889999999999999998888876

>KOG4005 consensus Transcription factor XBP-1 [Transcription]

Probab=93.37  E-value=0.71  Score=41.68  Aligned_cols=75  Identities=23%  Similarity=0.298  Sum_probs=56.7

Q ss_pred             chHHHHHHHHHH-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           81 IIDERKQRRMIS-----NRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus        81 ~~deRR~RR~ls-----NRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      ..+.||.+-.+.     .|.-||-+.+  ...+.+|+.+-..|+.||+.|+.....|..+.+.+..+=..|++++++|.+
T Consensus        69 K~~RrKLKNRVAAQtaRDrKKaRm~em--e~~i~dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~le~~~~~l~~~~~  146 (292)
T KOG4005|consen   69 KVQRRKLKNRVAAQTARDRKKARMEEM--EYEIKDLTEENEILQNENDSLRAINESLLAKNHELDSELELLRQELAELKQ  146 (292)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHH
Confidence            456666663332     3333332222  345789999999999999999999999999999999999999999999876


Q ss_pred             HH
Q 043159          156 ML  157 (201)
Q Consensus       156 ~L  157 (201)
                      .-
T Consensus       147 ~~  148 (292)
T KOG4005|consen  147 QQ  148 (292)
T ss_pred             HH
Confidence            53

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.22  E-value=2.3  Score=36.83  Aligned_cols=52  Identities=8%  Similarity=0.058  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      ++..+|..+++.+..+...|..++..|++++..+..|+..|++++..++..+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~  169 (206)
T PRK10884        118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTI  169 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666666666666666666666666666666666666666555433

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=93.19  E-value=0.65  Score=43.66  Aligned_cols=63  Identities=21%  Similarity=0.249  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      --=+|-+.+...||.-+.+++.||+.|..+++.+.+++...+.|+..|..|+++-.+..+.++
T Consensus       120 ~vf~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L~  182 (401)
T PF06785_consen  120 EVFMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQELN  182 (401)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888999999999999999999999999999999999999888877666666665

>PRK02119 hypothetical protein; Provisional

Probab=93.18  E-value=2  Score=31.44  Aligned_cols=50  Identities=12%  Similarity=0.052  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      +++.+||.++...+.....|-..+..       -..+-..|+.++..|..+|.++..
T Consensus         9 ~Ri~~LE~rla~QE~tie~LN~~v~~-------Qq~~id~L~~ql~~L~~rl~~~~~   58 (73)
T PRK02119          9 NRIAELEMKIAFQENLLEELNQALIE-------QQFVIDKMQVQLRYMANKLKDMQP   58 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45666666666666655555554443       344446677788888888888763

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=93.16  E-value=0.88  Score=34.38  Aligned_cols=55  Identities=15%  Similarity=0.172  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      -++.||.+|...-....-|+-+++.|+++...+..|+..++..-.+|.+.-..++
T Consensus         5 vleqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk   59 (79)
T PRK15422          5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK   59 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999988887776666666665554

>PRK04406 hypothetical protein; Provisional

Probab=93.10  E-value=2.3  Score=31.40  Aligned_cols=49  Identities=2%  Similarity=0.080  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      ++.+||.++..++.-..       .|.+....-..+-..|+.++..|..+|..+..
T Consensus        12 Ri~~LE~~lAfQE~tIe-------~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~~~~   60 (75)
T PRK04406         12 RINDLECQLAFQEQTIE-------ELNDALSQQQLLITKMQDQMKYVVGKVKNMDS   60 (75)
T ss_pred             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            45555555555555444       44444444455557788889999999988874

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=93.10  E-value=0.89  Score=40.87  Aligned_cols=56  Identities=29%  Similarity=0.310  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +..++++..+-..|..++..|..+++.+++.+.+++.||++|.+.+..|-..+.++
T Consensus       141 kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L  196 (290)
T COG4026         141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDL  196 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHH
Confidence            45577777777888888888888888999999999999999988765544443333

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=92.92  E-value=0.93  Score=34.14  Aligned_cols=45  Identities=24%  Similarity=0.437  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL  153 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L  153 (201)
                      ++|..++..|+..-..|..++..+++.+..|..||..|..=+..|
T Consensus        19 ~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nL   63 (80)
T PF10224_consen   19 EELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNL   63 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888888888888888888888888888888888777777

The exact function is unknown.

>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold)

Probab=92.84  E-value=1.6  Score=34.70  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=19.0

Q ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           92 SNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH  136 (201)
Q Consensus        92 sNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~  136 (201)
                      .-.|...-|+..=.+.-++|+..+..|+.++...-.++..|..++
T Consensus        23 ~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki   67 (107)
T PF09304_consen   23 RSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKI   67 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444443344444444444444444444444444443333

The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.

>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]

Probab=92.83  E-value=0.55  Score=37.56  Aligned_cols=47  Identities=26%  Similarity=0.309  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD  152 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~  152 (201)
                      ..+.+|+.++..|-++...|+..+..+.++...|.-||..||.++.+
T Consensus         8 d~v~~le~~l~~l~~el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~   54 (114)
T COG4467           8 DQVDNLEEQLGVLLAELGGLKQHLGSLVEENTALRLENEKLRERLGE   54 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence            46889999999999999999999999999999999999999999988

>PRK04325 hypothetical protein; Provisional

Probab=92.50  E-value=2.5  Score=31.01  Aligned_cols=49  Identities=14%  Similarity=0.043  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      ++.+||.++..++.....|-..+..-.       .+-..|+.++..|..+|.++..
T Consensus        10 Ri~~LE~klAfQE~tIe~LN~vv~~Qq-------~~I~~L~~ql~~L~~rl~~~~~   58 (74)
T PRK04325         10 RITELEIQLAFQEDLIDGLNATVARQQ-------QTLDLLQAQLRLLYQQMRDANP   58 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcc
Confidence            477777777777766666655554433       3446677788888888888864

>TIGR00219 mreC rod shape-determining protein MreC

Probab=92.37  E-value=0.36  Score=43.26  Aligned_cols=36  Identities=36%  Similarity=0.417  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 043159          113 SHVVRLRTENHNLIDKLNHVSESHD----RVLQENARLRE  148 (201)
Q Consensus       113 ~qV~~L~~EN~~L~~el~~L~~~~~----~l~~EN~~Lra  148 (201)
                      ..+..|..||++|+.++..+..+..    .+..||.+||+
T Consensus        66 ~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~  105 (283)
T TIGR00219        66 KDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE  105 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556677888888888776644333    26666766666

MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.

>smart00340 HALZ homeobox associated leucin zipper

Probab=92.37  E-value=0.35  Score=32.74  Aligned_cols=28  Identities=25%  Similarity=0.443  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          128 KLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       128 el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      ..+.|++.|..|..||++|+.++.+||+
T Consensus         6 dCe~LKrcce~LteeNrRL~ke~~eLra   33 (44)
T smart00340        6 DCELLKRCCESLTEENRRLQKEVQELRA   33 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3567889999999999999999999985

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=92.17  E-value=2.3  Score=34.13  Aligned_cols=58  Identities=17%  Similarity=0.205  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE  159 (201)
Q Consensus       102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~  159 (201)
                      .+-+..++.|+.+++.++.+...+..+...+..++..+..-+..+++++..+...+..
T Consensus        69 ~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~  126 (151)
T PF11559_consen   69 ERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQ  126 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555555555555555544443

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA

Probab=92.05  E-value=9.7  Score=34.96  Aligned_cols=86  Identities=24%  Similarity=0.361  Sum_probs=68.2

Q ss_pred             hhcchHHHHHHHHHHhH-----HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           78 QLRIIDERKQRRMISNR-----ESARRSRMRK-QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS  151 (201)
Q Consensus        78 ~~~~~deRR~RR~lsNR-----ESARRSR~RK-q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~  151 (201)
                      .+...++|=++-|++|-     .++-....-- +..|++|+..+.+++.+......+++.+++.++.+..|-..|++++.
T Consensus        85 ~l~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L~  164 (302)
T PF09738_consen   85 SLAEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQLK  164 (302)
T ss_pred             HHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566777788899875     3444444444 57788899999999999988888899999999999999999999998


Q ss_pred             HHHHHHHHhhcC
Q 043159          152 DLRQMLTELQLS  163 (201)
Q Consensus       152 ~Lr~~L~~l~~~  163 (201)
                      ..-..|..-++.
T Consensus       165 ~rdeli~khGlV  176 (302)
T PF09738_consen  165 QRDELIEKHGLV  176 (302)
T ss_pred             HHHHHHHHCCee
Confidence            888888887754

They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=91.91  E-value=1.1  Score=32.20  Aligned_cols=49  Identities=24%  Similarity=0.287  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +++.+||.++..++.....|-..+..-.+.++       .|+.++..|..+|.++.
T Consensus         4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~-------~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQID-------RLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhc
Confidence            57888888888888877777776665555444       45556666666776666

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=91.87  E-value=2.8  Score=42.35  Aligned_cols=53  Identities=21%  Similarity=0.207  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREE-------ASDLRQMLTELQ  161 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrae-------l~~Lr~~L~~l~  161 (201)
                      +-+..+..+|+.|-..|+.++....+++..++.|...||..       .+.|-..|..|+
T Consensus       541 e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amq  600 (697)
T PF09726_consen  541 ESCRQRRRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQ  600 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence            34566667777777777777777777777777766655542       344444455554

; GO: 0016021 integral to membrane

>PRK00846 hypothetical protein; Provisional

Probab=91.81  E-value=3.4  Score=30.93  Aligned_cols=51  Identities=22%  Similarity=0.110  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS  163 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~  163 (201)
                      +++++||.++...+.-...|       .+.......+-..|+.++..|..+|.+++..
T Consensus        13 ~Ri~~LE~rlAfQe~tIe~L-------N~~v~~qq~~I~~L~~ql~~L~~rL~~~~~s   63 (77)
T PRK00846         13 ARLVELETRLSFQEQALTEL-------SEALADARLTGARNAELIRHLLEDLGKVRST   63 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            45566666666555544444       4444445556777888999999999999843

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=91.54  E-value=0.77  Score=30.90  Aligned_cols=39  Identities=26%  Similarity=0.324  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          124 NLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      +|....+.|+..++.|.++|..|..+...|+..+..+..
T Consensus         2 QlE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~   40 (45)
T PF02183_consen    2 QLERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKE   40 (45)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677888999999999999999999999998888763

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK02793 phi X174 lysis protein; Provisional

Probab=91.31  E-value=4.4  Score=29.56  Aligned_cols=51  Identities=25%  Similarity=0.138  Sum_probs=34.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS  163 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~  163 (201)
                      +++.+||.++...+.-...|-.-+...       ..+-..|..++..|..+|.++...
T Consensus         8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Q-------q~~I~~L~~~l~~L~~rl~~~~~~   58 (72)
T PRK02793          8 ARLAELESRLAFQEITIEELNVTVTAH-------EMEMAKLRDHLRLLTEKLKASQPS   58 (72)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccc
Confidence            467777777777776666655554443       334467777888888888887643

>PF13747 DUF4164: Domain of unknown function (DUF4164)

Probab=91.24  E-value=5.2  Score=30.29  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus        84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .++..+.+.+=|++=..|.-+.....+++.+|..|......|-.++......+..++.-|.++..++...-..|.
T Consensus        10 l~rL~~aid~LE~~v~~r~~~~~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir   84 (89)
T PF13747_consen   10 LTRLEAAIDRLEKAVDRRLERDRKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIR   84 (89)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777788888887777777777799999999999999999999999999999999999888888766555444

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=91.23  E-value=1.7  Score=35.51  Aligned_cols=55  Identities=25%  Similarity=0.399  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSES--HDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~--~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      +.+|..++..|+.+...|..++..|...  ...+..+-..|+.++..|..+|..+..
T Consensus        81 i~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   81 IKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5556666666666666666666666543  456666777777777777777777774

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF15294 Leu_zip: Leucine zipper

Probab=90.93  E-value=1.2  Score=40.52  Aligned_cols=51  Identities=22%  Similarity=0.389  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      |..++..|+.||..|+.++..+...+..+..|+..|..++.+|+.......
T Consensus       130 l~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~  180 (278)
T PF15294_consen  130 LNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK  180 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            788999999999999999999999999999999999999999999666555

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=90.86  E-value=3.9  Score=35.48  Aligned_cols=59  Identities=12%  Similarity=0.160  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           99 RSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus        99 RSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      .-+..-.+.+..|..+++.|+..|..|...+....++...+..+-..+......|.-.+
T Consensus        49 ~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m  107 (251)
T PF11932_consen   49 DEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLM  107 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444556666667777777777777777777666666666666655555544444433

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF04880 NUDE_C: NUDE protein, C-terminal conserved region; InterPro: IPR006964 This domain represents the C-terminal conserved region of NUDE proteins

Probab=90.79  E-value=0.43  Score=40.34  Aligned_cols=46  Identities=28%  Similarity=0.404  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      |+++|.+.++.-..|.-|..+|.    +-..|..++++||.|+.+|++.|
T Consensus         2 LeD~EsklN~AIERnalLE~ELd----EKE~L~~~~QRLkDE~RDLKqEl   47 (166)
T PF04880_consen    2 LEDFESKLNQAIERNALLESELD----EKENLREEVQRLKDELRDLKQEL   47 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHCH--------------
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999888888888888883    45567778888888888887777

Emericella nidulans (Aspergillus nidulans) NUDE, acts in the cytoplasmic dynein/dynactin pathway and is required for distribution of nuclei []. It is a homologue of the nuclear distribution protein RO11 of Neurospora crassa. NUDE interacts with the NUDF via an N-terminal coiled coil domain; this is the only domain which is absolutely required for NUDE function.; PDB: 2V66_B 2V71_B.

>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi

Probab=90.67  E-value=0.82  Score=31.95  Aligned_cols=49  Identities=24%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR  154 (201)
Q Consensus       103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr  154 (201)
                      |+..+|.||+.++..=+ |..  ...-....+.+..+..||..|++++..++
T Consensus         1 kw~~Rl~ELe~klkaer-E~R--~~d~~~a~~rl~~l~~EN~~Lr~eL~~~r   49 (52)
T PF12808_consen    1 KWLLRLEELERKLKAER-EAR--SLDRSAARKRLSKLEGENRLLRAELERLR   49 (52)
T ss_pred             CHHHHHHHHHHHHHHhH-Hhc--cCCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46677788877665433 111  12234556777788999999999988765

In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.67  E-value=2.9  Score=33.52  Aligned_cols=20  Identities=30%  Similarity=0.478  Sum_probs=11.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 043159          139 VLQENARLREEASDLRQMLT  158 (201)
Q Consensus       139 l~~EN~~Lrael~~Lr~~L~  158 (201)
                      ...++.+|+..+.+++..+.
T Consensus        94 K~E~veEL~~Dv~DlK~myr  113 (120)
T PF12325_consen   94 KSEEVEELRADVQDLKEMYR  113 (120)
T ss_pred             hHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666665554

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family

Probab=90.45  E-value=1.6  Score=42.36  Aligned_cols=53  Identities=23%  Similarity=0.373  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHD--------RVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~--------~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +..|..+-+.|..||++|+.+...+.+++.        .+..|-..|+.+...++..|.+|
T Consensus        75 ~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l  135 (472)
T TIGR03752        75 LAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQL  135 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556666666666666554444333322        22233444444444444444444

Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=90.23  E-value=1.8  Score=35.37  Aligned_cols=52  Identities=25%  Similarity=0.286  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          104 KQRHLDELWSHVVRLRTENHNLIDKL--NHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       104 Kq~~l~eLe~qV~~L~~EN~~L~~el--~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      .++.+.+|..++..|+.+-..|...+  ..+......+..|+..|.+++..|+.
T Consensus        84 L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~  137 (169)
T PF07106_consen   84 LREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS  137 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45567777777777777777777765  46667777778888888888877776

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89

Probab=90.13  E-value=2.2  Score=31.05  Aligned_cols=49  Identities=27%  Similarity=0.309  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      ++...+.....|..|+.....++..+-..+..|..||..|+.++..++.
T Consensus        20 k~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~r~   68 (69)
T PF14197_consen   20 KNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEELRA   68 (69)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4555566777777888888888888778888888888888888776653

>PRK11637 AmiB activator; Provisional

Probab=90.05  E-value=7.3  Score=36.35  Aligned_cols=65  Identities=12%  Similarity=0.184  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           94 RESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus        94 RESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      ....+.....-...+..|+.++..+..+-..+..++..+..++..+..+=..++.++..++..|.
T Consensus        63 i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~  127 (428)
T PRK11637         63 VRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA  127 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445556666666666666666666666666666666666665555555555444443

>PRK00295 hypothetical protein; Provisional

Probab=90.00  E-value=5.7  Score=28.66  Aligned_cols=49  Identities=20%  Similarity=0.104  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +++.+||.++..++.....|-..+..-.+       +-..|+.++..|..+|.++.
T Consensus         5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~-------~I~~L~~ql~~L~~rl~~~~   53 (68)
T PRK00295          5 ERVTELESRQAFQDDTIQALNDVLVEQQR-------VIERLQLQMAALIKRQEEMV   53 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh
Confidence            45888888888888777766665554433       44667778888888888887

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=89.50  E-value=4.9  Score=32.18  Aligned_cols=14  Identities=29%  Similarity=0.437  Sum_probs=5.6

Q ss_pred             HHHHHHHHHHHHHH
Q 043159          144 ARLREEASDLRQML  157 (201)
Q Consensus       144 ~~Lrael~~Lr~~L  157 (201)
                      ..|+.++.+|..++
T Consensus        71 ~~L~~el~~l~~ry   84 (120)
T PF12325_consen   71 EELEQELEELQQRY   84 (120)
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444333

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking

Probab=89.13  E-value=13  Score=31.87  Aligned_cols=15  Identities=13%  Similarity=0.180  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 043159          109 DELWSHVVRLRTENH  123 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~  123 (201)
                      +++..++..++..++
T Consensus        87 ~~~r~~l~~~~~~l~  101 (302)
T PF10186_consen   87 EQKRERLEELRESLE  101 (302)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy

>PRK02119 hypothetical protein; Provisional

Probab=88.59  E-value=3.6  Score=30.09  Aligned_cols=46  Identities=9%  Similarity=0.125  Sum_probs=24.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +..++.++..|+....-+..-++.|..   .+....    .++..|++.|..|
T Consensus         4 ~~~~e~Ri~~LE~rla~QE~tie~LN~---~v~~Qq----~~id~L~~ql~~L   49 (73)
T PRK02119          4 QQNLENRIAELEMKIAFQENLLEELNQ---ALIEQQ----FVIDKMQVQLRYM   49 (73)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHH
Confidence            456777777777766555444443321   223323    3345566666655

>PRK13922 rod shape-determining protein MreC; Provisional

Probab=88.57  E-value=4  Score=35.69  Aligned_cols=34  Identities=38%  Similarity=0.483  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 043159          116 VRLRTENHNLIDKLNHVSESH---DRVLQENARLREE  149 (201)
Q Consensus       116 ~~L~~EN~~L~~el~~L~~~~---~~l~~EN~~Lrae  149 (201)
                      ..+..||..|++++..|+.+.   ..+..||.+||+.
T Consensus        72 ~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~l  108 (276)
T PRK13922         72 FDLREENEELKKELLELESRLQELEQLEAENARLREL  108 (276)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444443322   3456666666653

>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions []

Probab=88.55  E-value=9  Score=29.06  Aligned_cols=74  Identities=19%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      -++...++.....=..|...+..|+.++..|..|-..-..+.-.+.+..+.+..||..|+..+..=+..+..|+
T Consensus         6 ~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~   79 (96)
T PF08647_consen    6 VSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLK   79 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            35666777777888889999999999999999999999999999999999999999999999876665555554

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=88.54  E-value=9.8  Score=31.95  Aligned_cols=62  Identities=15%  Similarity=0.176  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          100 SRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       100 SR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      -+...+..+..|+.++......++.|..++..|.-++..++.....|..+-.+|-.++....
T Consensus       124 ~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm~~k  185 (194)
T PF08614_consen  124 ELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWMQRK  185 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444456666677777777777777777777777777777777777777777777765543

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK11637 AmiB activator; Provisional

Probab=88.14  E-value=12  Score=34.95  Aligned_cols=59  Identities=12%  Similarity=0.170  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..+..+.+++.++..+..+...+..++..+..++..+..+=..|..++.+++..|....
T Consensus        65 ~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~  123 (428)
T PRK11637         65 QQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQE  123 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555555555555555555555555555555555555555555554444

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=88.01  E-value=11  Score=32.68  Aligned_cols=54  Identities=15%  Similarity=0.240  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      .++++..+...|..+-..|..+++.+...+..+...-..++.++.+|.+++..+
T Consensus        43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~   96 (251)
T PF11932_consen   43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQI   96 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444444444444444444444444444444444444444444444444443

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function

Probab=87.83  E-value=18  Score=31.54  Aligned_cols=79  Identities=9%  Similarity=0.172  Sum_probs=69.7

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS  163 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~  163 (201)
                      =|+-++..-.+-+.|.-..-++++..|...+..-+.+-+....+-..++.+...|..|....+++|.+|++.|..|+..
T Consensus       105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q  183 (192)
T PF11180_consen  105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQ  183 (192)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677778888888888899999999999999999888888888999999999999999999999999999999964

>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=86.95  E-value=5.4  Score=30.47  Aligned_cols=42  Identities=33%  Similarity=0.439  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH
Q 043159          116 VRLRTENHNLIDKLNHVSES------HDRVLQENARLREEASDLRQML  157 (201)
Q Consensus       116 ~~L~~EN~~L~~el~~L~~~------~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      ..+..+|..|..++..|+.+      ......||.+|++++..|+...
T Consensus        20 ~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~   67 (86)
T PF12711_consen   20 SYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY   67 (86)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45556666677777666643      5668899999999998887665

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=86.90  E-value=1  Score=32.28  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          120 TENHNLIDKLNHVSESHDRVLQENARLREE  149 (201)
Q Consensus       120 ~EN~~L~~el~~L~~~~~~l~~EN~~Lrae  149 (201)
                      .|-+.|+.+|..|..+...++.||..||+.
T Consensus        14 EEVevLK~~I~eL~~~n~~Le~EN~~Lk~~   43 (59)
T PF01166_consen   14 EEVEVLKEQIAELEERNSQLEEENNLLKQN   43 (59)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345566667777777777778888888764

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>PF15058 Speriolin_N: Speriolin N terminus

Probab=86.79  E-value=1.7  Score=37.92  Aligned_cols=38  Identities=24%  Similarity=0.394  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL  153 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L  153 (201)
                      .+.|.+++++|-.||++|++.+.        |..||.+||.-+.+-
T Consensus         7 yeGlrhqierLv~ENeeLKKlVr--------LirEN~eLksaL~ea   44 (200)
T PF15058_consen    7 YEGLRHQIERLVRENEELKKLVR--------LIRENHELKSALGEA   44 (200)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHH--------HHHHHHHHHHHHHHh
Confidence            36788889999999999988776        566888888775443

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=86.79  E-value=0.03  Score=52.27  Aligned_cols=55  Identities=22%  Similarity=0.184  Sum_probs=47.6

Q ss_pred             cchHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q 043159           80 RIIDERKQRRMISNRESARR---SRMRKQRHLDELWSHVVRLR-TENHNLIDKLNHVSE  134 (201)
Q Consensus        80 ~~~deRR~RR~lsNRESARR---SR~RKq~~l~eLe~qV~~L~-~EN~~L~~el~~L~~  134 (201)
                      ...+.|+.+|+++|+.+|.+   +|.||+.....|..+|+.|+ .++..|..++..|..
T Consensus       149 ~~~~~~~~~rr~rn~~aA~~~~~~r~~~~~~t~~l~~qv~~l~~~~~~~l~~~is~Lqn  207 (395)
T KOG1414|consen  149 PEPEEKRLLRRERNPVAAAKPIPCRNRKKPSTSPLQRQVELLPPGINSPLSPQISPLQN  207 (395)
T ss_pred             CcchHHHHhhccccccccCCCCCCccccccccccccchHhhcCCCCCcccCcccccccc
Confidence            35788999999999999999   99999999999999999999 888876666665443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=86.71  E-value=4.7  Score=39.92  Aligned_cols=62  Identities=29%  Similarity=0.451  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           96 SARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus        96 SARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      .|.+.|..-...+.+....+..++.+...+++++..+..+...|..||.+|+.++..++..|
T Consensus       131 ~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~l  192 (546)
T KOG0977|consen  131 KAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQL  192 (546)
T ss_pred             HHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            33334444445555666666777777777777777777777788888888888877777544

>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure

Probab=86.61  E-value=6.5  Score=29.61  Aligned_cols=58  Identities=26%  Similarity=0.315  Sum_probs=42.1

Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          105 QRHLDELWS-HVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       105 q~~l~eLe~-qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      ...++.++. .-+.|..+-..|+..+..|..+.+.+..||..|+.+-.-|+.=|..|-.
T Consensus         7 ~~d~e~~~~e~k~~Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~   65 (80)
T PF10224_consen    7 SEDIEKLEKEEKEELIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMS   65 (80)
T ss_pred             hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444553 3567777777888888888888888888888888888888877777653

The exact function is unknown.

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=86.44  E-value=7.2  Score=38.98  Aligned_cols=72  Identities=22%  Similarity=0.374  Sum_probs=45.3

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLID---KLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~---el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ...|.+.--+--..+..+|.+|+.++..+..+......   .+..=+....++++.|..||.++.+|...+..|.
T Consensus       106 qv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk~t~SRAlsQN~eLK~QL~Elq~~Fv~lt  180 (617)
T PF15070_consen  106 QVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDKATASRALSQNRELKEQLAELQDAFVKLT  180 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            34455544444447788888888888777665433322   2222233466677778888888888877776665

>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.41  E-value=6.4  Score=35.67  Aligned_cols=56  Identities=13%  Similarity=0.250  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLS  163 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~  163 (201)
                      ...++++..++..++.++.++..++..+..++..+   +..++++-.-|..+++.|+.+
T Consensus        58 ~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~---~~~I~~r~~~l~~raRAmq~n  113 (265)
T COG3883          58 DNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAEL---KENIVERQELLKKRARAMQVN  113 (265)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHc
Confidence            33333333333444444444433333333332222   223333444444555555543

>PRK09039 hypothetical protein; Validated

Probab=86.24  E-value=5  Score=36.98  Aligned_cols=50  Identities=16%  Similarity=0.153  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ...+|..|+.+...|+.++..+...++.++.+....++++.+|.++|...
T Consensus       135 ~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a  184 (343)
T PRK09039        135 ALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVA  184 (343)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456677777777777777777777777777777777777777766555

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=86.13  E-value=11  Score=27.51  Aligned_cols=58  Identities=14%  Similarity=0.277  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      |.+.+..|-.+-..|......+...+..|+.+...++.+...|+.++..+...+..+.
T Consensus        10 KDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~   67 (74)
T PF12329_consen   10 KDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLE   67 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666777777777777766666667777777776777777777776666666666554

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=86.06  E-value=5.3  Score=34.74  Aligned_cols=51  Identities=24%  Similarity=0.356  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      +++|+..-..|..||..|++.+..+.+....|..|+..|+.++..+.+.|.
T Consensus        10 v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~   60 (193)
T PF14662_consen   10 VEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQ   60 (193)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555555555555555555555555555555555555555554444443

>PRK02793 phi X174 lysis protein; Provisional

Probab=85.83  E-value=6.6  Score=28.61  Aligned_cols=44  Identities=18%  Similarity=0.125  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +++.++..|+....-+..-++.|.+   .+..    ...++..|++.|..|
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~Ln~---~v~~----Qq~~I~~L~~~l~~L   48 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEELNV---TVTA----HEMEMAKLRDHLRLL   48 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHHH----HHHHHHHHHHHHHHH
Confidence            4677777777665555444443322   2222    233345555555555

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=85.68  E-value=6.8  Score=28.10  Aligned_cols=44  Identities=14%  Similarity=0.161  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      |+.++..|+....-+-..++.|..       .=.....++..|++.|..|.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~-------~v~~Qq~~I~~L~~~l~~L~   45 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELND-------VVTEQQRQIDRLQRQLRLLR   45 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence            456666666555444444443322       22223335566666666665

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK09039 hypothetical protein; Validated

Probab=85.68  E-value=11  Score=34.75  Aligned_cols=21  Identities=24%  Similarity=0.232  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 043159          110 ELWSHVVRLRTENHNLIDKLN  130 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~  130 (201)
                      -|..+++.|+.+...|...|.
T Consensus       141 ~L~~qI~aLr~Qla~le~~L~  161 (343)
T PRK09039        141 LLNQQIAALRRQLAALEAALD  161 (343)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=85.63  E-value=3.1  Score=32.26  Aligned_cols=30  Identities=10%  Similarity=0.262  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          104 KQRHLDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus       104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      .++++++++.+++.|+.+|..|..++..|+
T Consensus        32 l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~   61 (105)
T PRK00888         32 VNDQVAAQQQTNAKLKARNDQLFAEIDDLK   61 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444455555555555555555555554443

>smart00338 BRLZ basic region leucin zipper

Probab=85.61  E-value=4.4  Score=28.20  Aligned_cols=30  Identities=30%  Similarity=0.489  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          131 HVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      .|..++..+..+|..|+.++..|+..+..+
T Consensus        30 ~Le~~~~~L~~en~~L~~~~~~l~~e~~~l   59 (65)
T smart00338       30 ELERKVEQLEAENERLKKEIERLRRELEKL   59 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444555555555555555544443

>PRK00295 hypothetical protein; Provisional

Probab=85.55  E-value=9  Score=27.61  Aligned_cols=19  Identities=21%  Similarity=0.171  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043159          111 LWSHVVRLRTENHNLIDKL  129 (201)
Q Consensus       111 Le~qV~~L~~EN~~L~~el  129 (201)
                      ++.++..|+....-+..-+
T Consensus         3 ~e~Ri~~LE~kla~qE~ti   21 (68)
T PRK00295          3 LEERVTELESRQAFQDDTI   21 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555444443333

>PHA02562 46 endonuclease subunit; Provisional

Probab=85.52  E-value=15  Score=34.67  Aligned_cols=44  Identities=14%  Similarity=0.290  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREE  149 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrae  149 (201)
                      .....|+.++..|+.++..+..++..+..++..+..+-..+..+
T Consensus       358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~~~~~~~ke  401 (562)
T PHA02562        358 DKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVKTKSELVKE  401 (562)
T ss_pred             HHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555555555555555555555544444444

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=85.41  E-value=19  Score=29.52  Aligned_cols=73  Identities=22%  Similarity=0.287  Sum_probs=49.0

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           89 RMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        89 R~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .........+.-++.+++.++.++..+..+..+-..|..++.........+..+-..+.+....+.+++.+.+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  185 (191)
T PF04156_consen  113 KLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQ  185 (191)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334445555556677777777777777777777777766666666666666666666666666666666654

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins

Probab=85.36  E-value=4.2  Score=36.16  Aligned_cols=39  Identities=15%  Similarity=0.210  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      +++..|||.++..+..+...|+.+++       .|.++|..|-+++
T Consensus        92 R~Rn~ELE~elr~~~~~~~~L~~Ev~-------~L~~DN~kLYEKi  130 (248)
T PF08172_consen   92 RQRNAELEEELRKQQQTISSLRREVE-------SLRADNVKLYEKI  130 (248)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence            34456677777666666655555544       4555666665554

These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=85.29  E-value=6.2  Score=36.43  Aligned_cols=50  Identities=26%  Similarity=0.323  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          111 LWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       111 Le~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      |+.++..+..||..|...+...+.....|.+|...|+.+.++....|.+.
T Consensus       246 lQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~Ea  295 (306)
T PF04849_consen  246 LQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEA  295 (306)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444444444444444444444444444444444444444433

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=85.12  E-value=3.7  Score=36.19  Aligned_cols=16  Identities=38%  Similarity=0.686  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHHHHHHH
Q 043159          133 SESHDRVLQENARLRE  148 (201)
Q Consensus       133 ~~~~~~l~~EN~~Lra  148 (201)
                      ..++++|..||+.|+.
T Consensus       192 ~~EydrLlee~~~Lq~  207 (216)
T KOG1962|consen  192 QDEYDRLLEEYSKLQE  207 (216)
T ss_pred             ccHHHHHHHHHHHHHH
Confidence            3333333333333333

>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]

Probab=85.07  E-value=29  Score=31.97  Aligned_cols=55  Identities=22%  Similarity=0.313  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSES-----------HDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~-----------~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +|+.|+.+...|+.+|+.|.-++..++++           ...|+.+|..+++....|+..+..|.
T Consensus        53 qL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLE  118 (333)
T KOG1853|consen   53 QLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELE  118 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444555555544444332           34567778888888888887777765

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=85.06  E-value=27  Score=31.89  Aligned_cols=77  Identities=17%  Similarity=0.238  Sum_probs=51.4

Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 043159           90 MISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPY  166 (201)
Q Consensus        90 ~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~  166 (201)
                      .+..=+....-+..=.+.+.+|+.+...|..+-..+-.....+..+...+..|...|..++......|..+....+|
T Consensus        62 l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~ktNv~  138 (314)
T PF04111_consen   62 LLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYASNQLDRLRKTNVY  138 (314)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT--TT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence            33333334444444455566666666667666666666777777777778888888888888888888888866655

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.

>PRK00888 ftsB cell division protein FtsB; Reviewed

Probab=84.81  E-value=2.7  Score=32.60  Aligned_cols=31  Identities=19%  Similarity=0.347  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          124 NLIDKLNHVSESHDRVLQENARLREEASDLR  154 (201)
Q Consensus       124 ~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr  154 (201)
                      .+..++..+++++..+..+|..|+.++..|+
T Consensus        31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~   61 (105)
T PRK00888         31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLK   61 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3334444444444444555555555555554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.55  E-value=11  Score=28.29  Aligned_cols=53  Identities=15%  Similarity=0.167  Sum_probs=29.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ++.|+.+|.+.-....-|.-+++.|+++...+..|-..+.....+|++.-..+
T Consensus         6 ~ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneql   58 (79)
T COG3074           6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQL   58 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666666555555666666666655555555555555555554443333

>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4

Probab=84.52  E-value=31  Score=31.40  Aligned_cols=60  Identities=13%  Similarity=0.256  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSS  164 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~  164 (201)
                      +..++.+..++.+.+.+-..++.++...+.++..+..+-..|...+..+..++......+
T Consensus       206 ~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~s  265 (269)
T PF05278_consen  206 KEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKS  265 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            567777777888888888888888888888888888888888888888888888776433

>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus

Probab=84.38  E-value=2  Score=40.57  Aligned_cols=32  Identities=38%  Similarity=0.479  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          114 HVVRLRTENHNLIDKLNHVSESHDRVLQENARLR  147 (201)
Q Consensus       114 qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lr  147 (201)
                      +...|+.||+.|+++++.|+.+..+|  ||..|+
T Consensus        33 e~~aLr~EN~~LKkEN~~Lk~eVerL--E~e~l~   64 (420)
T PF07407_consen   33 ENFALRMENHSLKKENNDLKIEVERL--ENEMLR   64 (420)
T ss_pred             hhhhHHHHhHHHHHHHHHHHHHHHHH--HHHhhh
Confidence            55677788888888888888777777  555665

Members of this family are typically of around 420 residues in length. The function of this family is unknown.

>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]

Probab=84.34  E-value=7.8  Score=34.62  Aligned_cols=32  Identities=22%  Similarity=0.403  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          130 NHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..+..+...|+.||..||.++..|++.|..+.
T Consensus       218 ~e~~~r~~~leken~~lr~~v~~l~~el~~~~  249 (269)
T KOG3119|consen  218 DEMAHRVAELEKENEALRTQVEQLKKELATLR  249 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666666666666666665554

>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]

Probab=84.18  E-value=35  Score=32.81  Aligned_cols=31  Identities=29%  Similarity=0.339  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWS  113 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~  113 (201)
                      ++|.+||+..--|-=||.|.+=...+.||-.
T Consensus       227 ~~rdr~Krd~HNeVERRRR~nIN~~IkeLg~  257 (411)
T KOG1318|consen  227 LERDRRKRDNHNEVERRRRENINDRIKELGQ  257 (411)
T ss_pred             hHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            4444444444444444444444444444443

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=84.05  E-value=10  Score=30.82  Aligned_cols=35  Identities=17%  Similarity=0.299  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQ  141 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~  141 (201)
                      ..++++.++..|..++..+-.+|..|..++..++.
T Consensus        15 r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~   49 (143)
T PF12718_consen   15 RAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEE   49 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444433333333

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana

Probab=84.04  E-value=23  Score=30.29  Aligned_cols=79  Identities=14%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHH
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES--------------HDRVLQENARLRE  148 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~--------------~~~l~~EN~~Lra  148 (201)
                      +-+-.+..+...-+-+-.+.+.+.+...|+.++..-..++..+..++..|..+              ......|..+|+.
T Consensus        87 nV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks  166 (190)
T PF05266_consen   87 NVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIKELEMKILELQRQAAKLKEKKEAKDKEISRLKS  166 (190)
T ss_pred             ccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555555666666666666666666666654433333333333333333              2333344555555


Q ss_pred             HHHHHHHHHHHhh
Q 043159          149 EASDLRQMLTELQ  161 (201)
Q Consensus       149 el~~Lr~~L~~l~  161 (201)
                      .+..+.+.+.++.
T Consensus       167 ~~~~l~~~~~~~e  179 (190)
T PF05266_consen  167 EAEALKEEIENAE  179 (190)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555443

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=83.92  E-value=13  Score=26.40  Aligned_cols=47  Identities=21%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD  152 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~  152 (201)
                      +.+++|..+|..|.....+|...+..++........|=.+-..++..
T Consensus         3 akid~Ls~dVq~L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN   49 (56)
T PF04728_consen    3 AKIDQLSSDVQTLNSKVDQLSSDVNALRADVQAAKEEAARANQRLDN   49 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677777777777777777777777766655555544444444433

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion

Probab=83.88  E-value=9  Score=32.57  Aligned_cols=52  Identities=19%  Similarity=0.275  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      +|++=..+.+.|..-|.-|+.+++.....++.|..+...|..+...++..|.
T Consensus        68 rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~  119 (182)
T PF15035_consen   68 RLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELE  119 (182)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444455666666666667666666666666666666666666666555554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=83.76  E-value=5.7  Score=36.79  Aligned_cols=47  Identities=23%  Similarity=0.351  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      +.|...+..|+.+|..|+.++...+..+..|..||..||+....+.+
T Consensus        23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~   69 (310)
T PF09755_consen   23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQA   69 (310)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666666666666666666666666666666666666544443

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=83.67  E-value=17  Score=38.74  Aligned_cols=67  Identities=16%  Similarity=0.279  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           95 ESARRSRMRKQRHLDELWSHV-VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        95 ESARRSR~RKq~~l~eLe~qV-~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ...+.+..+..+.+.+++.+. ..+..+-.+...+++.|.++...++..+..|+++..++...+...+
T Consensus       368 ~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~  435 (1074)
T KOG0250|consen  368 RKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEE  435 (1074)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            334444444445555555555 4444445555555556666666666666666666555554444443

>PRK00736 hypothetical protein; Provisional

Probab=83.56  E-value=10  Score=27.31  Aligned_cols=50  Identities=20%  Similarity=0.233  Sum_probs=36.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      +++.+||.++..++.....|-..+..-.+.+       ..|..++..|..+|.++..
T Consensus         5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i-------~~L~~ql~~L~~rl~~~~~   54 (68)
T PRK00736          5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTV-------EQMRKKLDALTERFLSLEE   54 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhcc
Confidence            4588999999988887777766655544433       5666778888888888764

>PRK04325 hypothetical protein; Provisional

Probab=83.52  E-value=10  Score=27.73  Aligned_cols=47  Identities=15%  Similarity=0.172  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ++..++.++..|+....-+..-++.|..   .+....    .++..|+++|..|
T Consensus         3 ~~~~~e~Ri~~LE~klAfQE~tIe~LN~---vv~~Qq----~~I~~L~~ql~~L   49 (74)
T PRK04325          3 AVQEMEDRITELEIQLAFQEDLIDGLNA---TVARQQ----QTLDLLQAQLRLL   49 (74)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH----HHHHHHHHHHHHH
Confidence            3556777777777666555544443322   222223    3345666666666

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=83.38  E-value=7.7  Score=26.91  Aligned_cols=30  Identities=23%  Similarity=0.432  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          131 HVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       131 ~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      .|...+..|..+|..|+.++..|...+..|
T Consensus        30 ~Le~~~~~L~~en~~L~~~~~~L~~~~~~L   59 (64)
T PF00170_consen   30 ELEEKVEELESENEELKKELEQLKKEIQSL   59 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444444444444444444444444433

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=83.36  E-value=24  Score=29.06  Aligned_cols=73  Identities=19%  Similarity=0.195  Sum_probs=44.2

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ..-+|-......|++.+-+=-.-+++.+..|+.++..+..+...|..++..++.       |+..|-..+.+.+.++..|
T Consensus        27 ~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~s-------Ek~~L~k~lq~~q~kv~eL   99 (140)
T PF10473_consen   27 ESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRS-------EKENLDKELQKKQEKVSEL   99 (140)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH
Confidence            344556666777777777777777777777777777776666666666555443       4444444444444444444

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=83.31  E-value=9.7  Score=34.43  Aligned_cols=16  Identities=25%  Similarity=0.522  Sum_probs=5.7

Q ss_pred             HHHHHHHHHHHHHHHH
Q 043159          115 VVRLRTENHNLIDKLN  130 (201)
Q Consensus       115 V~~L~~EN~~L~~el~  130 (201)
                      +..+..|+..|..++.
T Consensus       144 l~E~~~EkeeL~~ele  159 (290)
T COG4026         144 LEELQKEKEELLKELE  159 (290)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3333333333333333

>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids []

Probab=83.12  E-value=16  Score=26.83  Aligned_cols=47  Identities=19%  Similarity=0.269  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          116 VRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       116 ~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      ......-+........+...+.....+|..|++++..|.+++..|..
T Consensus        17 ~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~   63 (70)
T PF04899_consen   17 QSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQRLSE   63 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555566777788888888889999999999999999988863

>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins

Probab=82.90  E-value=12  Score=28.94  Aligned_cols=12  Identities=25%  Similarity=0.329  Sum_probs=5.0

Q ss_pred             HHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRL  118 (201)
Q Consensus       107 ~l~eLe~qV~~L  118 (201)
                      ++..+|.+++.|
T Consensus        50 Rl~~lE~~l~~L   61 (106)
T PF10805_consen   50 RLQALETKLEHL   61 (106)
T ss_pred             HHHHHHHHHHhC
Confidence            344444444444

The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.

>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]

Probab=82.87  E-value=18  Score=31.89  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      +.++.|+.+++....+-..+..+...|+.+.+.+..|=.+|.++-..|+.++.
T Consensus       158 ~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e~~~~EydrLlee~~~Lq~~i~  210 (216)
T KOG1962|consen  158 ADLEKLETELEKKQKKLEKAQKKVDALKKQSEGLQDEYDRLLEEYSKLQEQIE  210 (216)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHh
Confidence            33444444444444444444445555555555555555555555556655543

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=82.85  E-value=8  Score=27.02  Aligned_cols=29  Identities=21%  Similarity=0.431  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          104 KQRHLDELWSHVVRLRTENHNLIDKLNHV  132 (201)
Q Consensus       104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L  132 (201)
                      .++.+.+|+.+++.++.+|..|..++..+
T Consensus        22 ~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   22 LNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            33445555555555555555555544443

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=82.82  E-value=35  Score=30.51  Aligned_cols=46  Identities=13%  Similarity=0.270  Sum_probs=24.7

Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           88 RRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus        88 RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      +++..-.+.+++.=.-++..+++|+.+|..++.+-+.+..++..+.
T Consensus        34 ~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e   79 (239)
T COG1579          34 KKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAE   79 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444555555555555566666666655555555555554443

>PRK04406 hypothetical protein; Provisional

Probab=82.54  E-value=11  Score=27.86  Aligned_cols=46  Identities=4%  Similarity=0.106  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ++.|+.++..|+...       .....-++.|-..=.....++..|+++|..|
T Consensus         6 ~~~le~Ri~~LE~~l-------AfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L   51 (75)
T PRK04406          6 IEQLEERINDLECQL-------AFQEQTIEELNDALSQQQLLITKMQDQMKYV   51 (75)
T ss_pred             HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335666666665433       3322222222222223333456666666666

>TIGR02209 ftsL_broad cell division protein FtsL

Probab=82.53  E-value=6.6  Score=28.21  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          121 ENHNLIDKLNHVSESHDRVLQENARLREEASDLR  154 (201)
Q Consensus       121 EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr  154 (201)
                      ....+..++..+.++...+..||..|+.++..|.
T Consensus        25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~   58 (85)
T TIGR02209        25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELS   58 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3344444555555555555556666665555543

This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.

>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=82.41  E-value=23  Score=34.60  Aligned_cols=55  Identities=22%  Similarity=0.225  Sum_probs=46.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..+.|+.++.+|..+|..|+..+..|+-.++.+..|-.++-.++..|+-+|.+.+
T Consensus       298 e~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq  352 (502)
T KOG0982|consen  298 EKENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQ  352 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            3455667888999999999999999999999999998888888888888776655

>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans

Probab=82.41  E-value=22  Score=29.69  Aligned_cols=50  Identities=30%  Similarity=0.392  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .+|..+|..|+.+|..|..++..+..+...+......|+.+...+..+-.
T Consensus        92 k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee~e~~l~~e~~~l~er~~  141 (158)
T PF09744_consen   92 KDLQSQVEQLEEENRQLELKLKNLSDQSSRLEEREAELKKEYNRLHERER  141 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence            35666777777777777766666666666666666666666655554433

Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.

>KOG1414 consensus Transcriptional activator FOSB/c-Fos and related bZIP transcription factors [Transcription]

Probab=82.13  E-value=0.22  Score=46.52  Aligned_cols=45  Identities=33%  Similarity=0.421  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLI  126 (201)
Q Consensus        82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~  126 (201)
                      .++|+.|=.++||.+|-++|.|||.....|+.+...+..+|..|.
T Consensus       282 p~~~~~~~lern~~aas~~r~~~k~~~~~~~~~~~~~~~~n~~l~  326 (395)
T KOG1414|consen  282 PDERRRRFLERNRAAASRCRQKKKVWVLSLEKKAEELSSENGQLL  326 (395)
T ss_pred             chhhhhhhhhhhhhhhccccCCcccccccccccccchhhhhcccc
Confidence            466775559999999999999999999999999999999998876

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=82.05  E-value=12  Score=34.03  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .+..|..++..+..+...++.++..++.+...+..+-..+.++..++...|..+.
T Consensus       210 eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~  264 (325)
T PF08317_consen  210 ELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAE  264 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444444444444444444444444433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=81.65  E-value=20  Score=34.51  Aligned_cols=65  Identities=14%  Similarity=0.178  Sum_probs=31.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREE  149 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrae  149 (201)
                      ++.+-+.++=+.-.++....++....|+.++..++.+...+..++.........+......+...
T Consensus        38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~  102 (420)
T COG4942          38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNAR  102 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHH
Confidence            33333444444444444455555556666666666665555555554444444444443333333

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=81.54  E-value=7.6  Score=34.39  Aligned_cols=52  Identities=10%  Similarity=0.126  Sum_probs=43.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      +-+.+|..+++.|+.|...|+.+++.+..+++.+....+.|-.++..+..++
T Consensus        54 ~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~~~  105 (263)
T PRK10803         54 QLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDSLSSGG  105 (263)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3457888999999999999999999999888889888888888888765433

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

Probab=81.12  E-value=28  Score=33.53  Aligned_cols=56  Identities=7%  Similarity=0.128  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..+..++.++.....++..+...|..+...+..+..+-.+=+..++++-+.+..++
T Consensus        73 ~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L~A~~r~g  128 (420)
T COG4942          73 TEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRLAEQLAALQRSG  128 (420)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            44444555555555555566666666665555555544333333333333333333

>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]

Probab=81.11  E-value=6.1  Score=39.42  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSES  135 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~  135 (201)
                      ++|.+|..+.+.|+.||..|++++..+..+
T Consensus       309 ~rLq~ll~Ene~Lk~ENatLk~qL~~l~~E  338 (655)
T KOG4343|consen  309 ARLQALLSENEQLKKENATLKRQLDELVSE  338 (655)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            344455555555555555555555554433

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=81.11  E-value=12  Score=31.02  Aligned_cols=16  Identities=38%  Similarity=0.563  Sum_probs=7.3

Q ss_pred             HHHHHHHHHHHHHHHh
Q 043159          145 RLREEASDLRQMLTEL  160 (201)
Q Consensus       145 ~Lrael~~Lr~~L~~l  160 (201)
                      +.+++...+..++.++
T Consensus       117 ~~r~e~~~~~~ki~e~  132 (177)
T PF07798_consen  117 RIREEQAKQELKIQEL  132 (177)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            3444444444444444

>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]

Probab=80.97  E-value=6  Score=39.97  Aligned_cols=52  Identities=19%  Similarity=0.243  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      .+|-.+|.+|..|+.-|+.++..+++.-..++..+.+|.+++..+++.+.+.
T Consensus       325 NDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~a  376 (832)
T KOG2077|consen  325 NDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDA  376 (832)
T ss_pred             HHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4788899999999999999999998888888888999999988888877665

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function

Probab=80.72  E-value=25  Score=33.44  Aligned_cols=74  Identities=24%  Similarity=0.310  Sum_probs=51.9

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHH
Q 043159           84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV--------------SESHDRVLQENARLREE  149 (201)
Q Consensus        84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L--------------~~~~~~l~~EN~~Lrae  149 (201)
                      +-|.|.+.-|-|.-|..|.-    +++-..+.++|+..|++|+.++..+              ......+..||..|..+
T Consensus        74 q~kirk~~e~~eglr~i~es----~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn~~lqlq  149 (401)
T PF06785_consen   74 QTKIRKITEKDEGLRKIRES----VEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREENQCLQLQ  149 (401)
T ss_pred             HHHHHHHHhccHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            45667777777877766643    3444455667777777777776544              34466778899999999


Q ss_pred             HHHHHHHHHHhh
Q 043159          150 ASDLRQMLTELQ  161 (201)
Q Consensus       150 l~~Lr~~L~~l~  161 (201)
                      +.++.+...++.
T Consensus       150 L~~l~~e~~Eke  161 (401)
T PF06785_consen  150 LDALQQECGEKE  161 (401)
T ss_pred             HHHHHHHHhHhH
Confidence            998888876654

>PRK00736 hypothetical protein; Provisional

Probab=80.51  E-value=19  Score=25.96  Aligned_cols=19  Identities=5%  Similarity=-0.020  Sum_probs=9.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 043159          111 LWSHVVRLRTENHNLIDKL  129 (201)
Q Consensus       111 Le~qV~~L~~EN~~L~~el  129 (201)
                      ++.++..|+....-+-.-+
T Consensus         3 ~e~Ri~~LE~klafqe~ti   21 (68)
T PRK00736          3 AEERLTELEIRVAEQEKTI   21 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4455555555444443333

>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]

Probab=80.17  E-value=9.4  Score=30.44  Aligned_cols=42  Identities=21%  Similarity=0.330  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL  153 (201)
Q Consensus       112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L  153 (201)
                      -.||-+|+..-..|..++..++++.-.|..||..|-+-+..|
T Consensus        62 ItQVLELQnTLdDLSqRVdsVKEEnLKLrSENQVLGQYIeNL  103 (120)
T KOG3650|consen   62 ITQVLELQNTLDDLSQRVDSVKEENLKLRSENQVLGQYIENL  103 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence            345665555555555555555555555555555554444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	201
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	5e-11
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	8e-09
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	7e-08
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	1e-06
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	1e-06
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	9e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	2e-05
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	3e-04
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	8e-04
2wt7_B	90	Transcription factor MAFB; transcription, transcri	9e-04

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1 Length = 55

 Score = 55.1 bits (133), Expect = 5e-11
 Identities = 16/50 (32%), Positives = 32/50 (64%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE 134
           +++ R++ NRE+AR SR +K+ ++  L + V  L  +N  LI++L  + +
Sbjct: 1   KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKD 50

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1 Length = 63

 Score = 49.3 bits (118), Expect = 8e-09
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 14/76 (18%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144
           +K ++M  N+ +A R R +K+   + L      L  +N  L ++ +              
Sbjct: 2   KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERAD-------------- 47

Query: 145 RLREEASDLRQMLTEL 160
            L +E   L+ ++ E+
Sbjct: 48  SLAKEIQYLKDLIEEV 63

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1 Length = 61

 Score = 46.6 bits (111), Expect = 7e-08
 Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 14/73 (19%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144
           ++++ +  NR +A RSR +++  +  L      L + N  L                E  
Sbjct: 1   KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQL--------------QSEVT 46

Query: 145 RLREEASDLRQML 157
            LR E + L+Q+L
Sbjct: 47  LLRNEVAQLKQLL 59

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A Length = 62

 Score = 43.5 bits (103), Expect = 1e-06
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 14/75 (18%)

Query: 85  RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENA 144
           + +R+ + NR +A +SR RK   +  L   V  L+ +N  L                   
Sbjct: 1   KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSEL--------------ASTAN 46

Query: 145 RLREEASDLRQMLTE 159
            LRE+ + L+Q +  
Sbjct: 47  MLREQVAQLKQKVMN 61

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D Length = 63

 Score = 43.2 bits (102), Expect = 1e-06
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 14/74 (18%)

Query: 84  ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQEN 143
           E+++ R   N+ +A + R R++   D L +   +L  E   L                E 
Sbjct: 1   EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSAL--------------QTEI 46

Query: 144 ARLREEASDLRQML 157
           A L +E   L  +L
Sbjct: 47  ANLLKEKEKLEFIL 60

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus} Length = 107

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 16/75 (21%), Positives = 32/75 (42%)

Query: 81  IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL 140
           II  +++RR + NR  A   R+++    +EL      L+ E   L  +   +    D + 
Sbjct: 33  IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALR 92

Query: 141 QENARLREEASDLRQ 155
            +   L+  A  + +
Sbjct: 93  SKYEALQNFARTVAR 107

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 2e-05
 Identities = 30/192 (15%), Positives = 65/192 (33%), Gaps = 53/192 (27%)

Query: 44  NLPNSLIPQQGHELMTSQSSSLSNNSTS--DEAEEQQLRIIDERKQRRMISNRESARRSR 101
           N P +++     E++      +  N TS  D +   +LRI   + + R +          
Sbjct: 193 NSPETVL-----EMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---------- 237

Query: 102 MRKQRH------LDELWS-HVVR---------LRTENHNLIDKLNHVSESHDRVLQENAR 145
           ++ + +      L  + +              L T    + D L+  + +H  +   +  
Sbjct: 238 LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 146 LREE-------------ASDLRQMLTELQLSSPYT----NASLRDLGEVPCNTAHLRAES 188
           L  +               DL +   E+  ++P        S+RD      N  H+  + 
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK 354

Query: 189 TNQSITNSVDLL 200
               I +S+++L
Sbjct: 355 LTTIIESSLNVL 366

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1 Length = 87

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 83  DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
            +  + R   N  + R+SR + +    E    V+ L  EN  L  K+             
Sbjct: 13  SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV------------- 59

Query: 143 NARLREEASDLRQMLTELQLSSPYTNAS 170
             +L  E S LR +  +L      ++  
Sbjct: 60  -EQLSRELSTLRNLFKQLPEPLLASSGH 86

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A Length = 78

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 15/79 (18%)

Query: 83  DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
           DE K RR   N  + R+SR + +    E    V+ L  EN  L  K+             
Sbjct: 14  DEYKIRRE-RNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKV------------- 59

Query: 143 NARLREEASDLRQMLTELQ 161
             +L  E S LR +  +L 
Sbjct: 60  -EQLSRELSTLRNLFKQLP 77

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1 Length = 70

 Score = 35.8 bits (82), Expect = 8e-04
 Identities = 16/65 (24%), Positives = 31/65 (47%)

Query: 83  DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE 142
            E   +R   NR + R  R RK+ HL  L + VV L+  + +   + + + +   ++ +E
Sbjct: 6   QEPSSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEE 65

Query: 143 NARLR 147
              L+
Sbjct: 66  LRILK 70

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A Length = 90

 Score = 36.1 bits (83), Expect = 9e-04
 Identities = 13/80 (16%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 67  NNSTSDEAEEQQLRIIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLI 126
           N       +++ +R+   +++RR + NR  A+  R ++ +    L +   +L  +   L 
Sbjct: 12  NRHLRGFTKDEVIRL---KQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLK 68

Query: 127 DKLNHVSESHDRVLQENARL 146
            +++ ++   D    ++ +L
Sbjct: 69  QEVSRLARERDAYKVKSEKL 88

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	201
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	99.57
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	99.4
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	99.3
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	99.29
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	99.22
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	99.11
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	99.07
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	98.66
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	98.65
3a5t_A	107	Transcription factor MAFG; protein-DNA complex, BZ	98.49
2wt7_B	90	Transcription factor MAFB; transcription, transcri	98.3
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	96.57
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	96.57
1skn_P	92	DNA-binding domain of SKN-1; complex (transcriptio	96.46
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	95.78
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	95.68
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	95.58
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	94.97
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	94.44
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	94.41
3a2a_A	58	Voltage-gated hydrogen channel 1; voltage-gated pr	93.12
3vmx_A	48	Voltage-gated hydrogen channel 1; coiled-coil, ION	93.12
3hnw_A	138	Uncharacterized protein; coiled-coil, structural g	92.69
3m48_A	33	General control protein GCN4; leucine zipper, synt	92.02
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	91.81
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	91.6
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	91.56
3he5_A	49	Synzip1; heterodimeric coiled-coil, de novo protei	90.83
2c9l_Y	63	EB1, zebra, BZLF1 trans-activator protein; viral p	90.7
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.67
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.55
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	90.37
1kd8_B	36	GABH BLL, GCN4 acid base heterodimer base-D12LA16L	90.11
3cve_A	72	Homer protein homolog 1; coiled coil, alternative	89.86
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	89.52
2kz5_A	91	Transcription factor NF-E2 45 kDa subunit; structu	89.26
3cvf_A	79	Homer-3, homer protein homolog 3; coiled coil, alt	88.98
3s9g_A	104	Protein hexim1; cyclin T-binding domain (TBD), cyc	88.97
2xdj_A	83	Uncharacterized protein YBGF; unknown function; 1.	88.57
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	88.44
1p9i_A	31	Cortexillin I/GCN4 hybrid peptide; coiled-coil, un	88.24
1gd2_E	70	Transcription factor PAP1; basic leucine zipper, p	88.19
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	87.76
2bni_A	34	General control protein GCN4; four helix bundle, a	87.56
1nkp_A	88	C-MYC, MYC proto-oncogene protein; transcription,	87.51
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	87.44
1kd8_A	36	GABH AIV, GCN4 acid base heterodimer acid-D12IA16V	87.31
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	87.2
1uo4_A	34	General control protein GCN4; four helix bundle, c	86.99
3s4r_A	93	Vimentin; alpha-helix, cytoskeleton, intermediate	86.93
2dgc_A	63	Protein (GCN4); basic domain, leucine zipper, DNA	86.86
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	86.49
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	86.48
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	86.39
2hy6_A	34	General control protein GCN4; protein design, para	86.38
1gu4_A	78	CAAT/enhancer binding protein beta; transcription/	86.25
2oxj_A	34	Hybrid alpha/beta peptide based on the GCN4-P1 Se	86.19
2wq1_A	33	General control protein GCN4; TAA, nucleus, coiled	85.93
1t6f_A	37	Geminin; coiled-coil, cell cycle; 1.47A {Synthetic	85.83
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	85.81
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	85.73
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	85.7
3iv1_A	78	Tumor susceptibility gene 101 protein; coiled_COIL	85.64
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	85.47
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	85.23
3m9b_A	251	Proteasome-associated ATPase; coil COIL with 5 bet	84.97
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	84.88
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	84.85
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	84.83
2w83_C	77	C-JUN-amino-terminal kinase-interacting protein 4;	84.77
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	84.55
3m48_A	33	General control protein GCN4; leucine zipper, synt	84.13
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	83.57
4h22_A	103	Leucine-rich repeat flightless-interacting protei;	82.67
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	82.64
2lw1_A	89	ABC transporter ATP-binding protein UUP; ABC REG s	81.78
1hjb_A	87	Ccaat/enhancer binding protein beta; transcription	81.72
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	81.58
3jsv_C	94	NF-kappa-B essential modulator; ubiquitin, coiled-	81.45
2v66_B	111	Nuclear distribution protein NUDE-like 1; structur	81.38
1uii_A	83	Geminin; human, DNA replication, cell cycle; 2.00A	81.34
3c3g_A	33	Alpha/beta peptide with the GCN4-PLI SIDE chain S	81.24
2oqq_A	42	Transcription factor HY5; homodimer leucine zipper	80.96
2wt7_B	90	Transcription factor MAFB; transcription, transcri	80.9
3c3f_A	34	Alpha/beta peptide with the GCN4-PLI SIDE chain S	80.89
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	80.65
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	80.37
3swf_A	74	CGMP-gated cation channel alpha-1; coiled-coil, as	80.35
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	80.23

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=99.57  E-value=2.6e-15  Score=103.62  Aligned_cols=51  Identities=31%  Similarity=0.535  Sum_probs=47.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES  135 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~  135 (201)
                      ||.+||++||+||++||.||++|+++||.+|..|+.||..|..++..|.+.
T Consensus         1 kr~rR~~~NResA~rSR~RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~   51 (55)
T 1dh3_A            1 KREVRLMKNREAARESRRKKKEYVKSLENRVAVLENQNKTLIEELKALKDL   51 (55)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999999999999999999999999999999999999998887654

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=99.40  E-value=1.4e-12  Score=91.68  Aligned_cols=52  Identities=21%  Similarity=0.318  Sum_probs=47.6

Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           84 ERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSES  135 (201)
Q Consensus        84 eRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~  135 (201)
                      |||++|+++||+||++||.||++++.+|+.+|..|..+|..|..++..|..+
T Consensus         1 Ekr~rrrerNR~AA~rcR~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e   52 (63)
T 2wt7_A            1 EKRRIRRERNKMAAAKCRNRRRELTDTLQAETDQLEDEKSALQTEIANLLKE   52 (63)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999999999999988755443

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=99.30  E-value=4.5e-12  Score=89.55  Aligned_cols=51  Identities=27%  Similarity=0.346  Sum_probs=42.2

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           86 KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESH  136 (201)
Q Consensus        86 R~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~  136 (201)
                      ..++..+||+||+|||.||++|+.+|+.+|..|+.+|..|..++..|++.+
T Consensus        10 ~~~KR~rNreAArrsR~RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l   60 (63)
T 2dgc_A           10 AALKRARNTEAARRSRARKLQRMKQLEDKVEELLSKNYHLENEVARLKKLV   60 (63)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344599999999999999999999999999999998888887776543

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=99.29  E-value=1.4e-11  Score=85.69  Aligned_cols=59  Identities=22%  Similarity=0.317  Sum_probs=50.5

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      ||++|+++||+||++||.||++++.+|+.+|..|..+|..|..++..|.       .|+..|+..+
T Consensus         1 kR~~r~erNr~AA~k~R~rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L~-------~e~~~Lk~~l   59 (61)
T 1t2k_D            1 KRRKFLERNRAAASRSRQKRKVWVQSLEKKAEDLSSLNGQLQSEVTLLR-------NEVAQLKQLL   59 (61)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHh
Confidence            5789999999999999999999999999999999999999998887654       4555555443

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=99.22  E-value=2.7e-11  Score=84.63  Aligned_cols=50  Identities=30%  Similarity=0.436  Sum_probs=45.1

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      |+.||..+||+||++||.||++++.+|+.+|..|+.+|..|..++..|..
T Consensus         1 K~errr~rNr~AA~k~R~rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L~~   50 (62)
T 1jnm_A            1 KAERKRMRNRIAASKSRKRKLERIARLEEKVKTLKAQNSELASTANMLRE   50 (62)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788899999999999999999999999999999999999888876544

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=99.11  E-value=2.7e-10  Score=82.28  Aligned_cols=61  Identities=25%  Similarity=0.301  Sum_probs=50.6

Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           86 KQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARL  146 (201)
Q Consensus        86 R~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~L  146 (201)
                      ..||+..||+|+|.+|.||++|+.+||.+|..|+.++..|..++..|...+..|..||..|
T Consensus         9 ~~kR~~qNR~AQRafReRK~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E            9 SSKRKAQNRAAQRAFRKRKEDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            3688999999999999999999999999999999998887666666666666666666554

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=99.07  E-value=4.5e-10  Score=79.05  Aligned_cols=60  Identities=22%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           85 RKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS  151 (201)
Q Consensus        85 RR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~  151 (201)
                      |+.+++.+||.||+|+|.||++++.+|+.++..|+.+|..|..++..|       ..|+..|+.-+.
T Consensus         2 k~~rKr~rNr~AA~R~R~KKk~~~~~le~~~~~L~~~N~~L~~~i~~L-------~~E~~~Lk~ll~   61 (63)
T 1ci6_A            2 KKLKKMEQNKTAATRYRQKKRAEQEALTGECKELEKKNEALKERADSL-------AKEIQYLKDLIE   61 (63)
T ss_dssp             ------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chHhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHh
Confidence            678899999999999999999999999999999999999999888754       556666665443

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=98.66  E-value=1.4e-07  Score=70.55  Aligned_cols=51  Identities=24%  Similarity=0.248  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           82 IDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHV  132 (201)
Q Consensus        82 ~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L  132 (201)
                      .|++-..|..+|.++|+|||.++++...+++.+|..|+.||..|+.++..|
T Consensus        12 ~d~~Y~~rR~rNN~AarrSR~krk~r~~e~~~r~~~Le~EN~~Lr~~v~~L   62 (87)
T 1hjb_A           12 HSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQL   62 (87)
T ss_dssp             TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566778899999999999999999999999999999999998888753

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=98.65  E-value=1.3e-07  Score=69.40  Aligned_cols=52  Identities=25%  Similarity=0.274  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           83 DERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus        83 deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      ++.-..|..+|.++|+|||.+++....+++.+|..|+.||..|..++..|..
T Consensus        13 d~~Y~~rR~rNN~AakrSR~krk~r~~e~~~r~~~L~~eN~~L~~~v~~L~~   64 (78)
T 1gu4_A           13 SDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSR   64 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556789999999999999999999999999999999999888876544

>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}

Probab=98.49  E-value=5.4e-09  Score=81.01  Aligned_cols=47  Identities=28%  Similarity=0.413  Sum_probs=39.2

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLID  127 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~  127 (201)
                      ...-|.+||.++||.+|+.||.||.+.+++||.++..|..+...|..
T Consensus        33 ~~~lK~~RR~lKNR~yAq~CR~rk~~~~~~LE~e~~~L~~e~e~L~~   79 (107)
T 3a5t_A           33 IIQLKQRRRTLKNRGYAASCRVKRVTQKEELEKQKAELQQEVEKLAS   79 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSTTTTTTS
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999888766665554433

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=98.30  E-value=4.9e-06  Score=62.65  Aligned_cols=66  Identities=23%  Similarity=0.323  Sum_probs=51.5

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ...-|..||.++||-+|+-||.||.....+||.++..|..+-..|+.              ||..+..++..+.+++..|
T Consensus        23 v~~lKq~RRtlKNRgyAq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~--------------e~~~~~~e~d~~k~k~~~L   88 (90)
T 2wt7_B           23 VIRLKQKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQ--------------EVSRLARERDAYKVKSEKL   88 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHh
Confidence            46778899999999999999999999999999888887766655544              5555555666666666555

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=96.57  E-value=0.0067  Score=39.72  Aligned_cols=39  Identities=31%  Similarity=0.357  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      |+|+.+||.++..|+..|.+|..++..       |..||.-||+-+
T Consensus         2 KaYl~eLE~r~k~le~~naeLEervst-------Lq~EN~mLRqvl   40 (42)
T 2oqq_A            2 SAYLSELENRVKDLENKNSELEERLST-------LQNENQMLRHIL   40 (42)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHh
Confidence            589999999999999999888877775       566888777654

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=96.57  E-value=0.017  Score=42.65  Aligned_cols=51  Identities=20%  Similarity=0.362  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      -|.-+|+.|+.+|..|..++..++.....+..||..|+++......+|..+
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~L   74 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQAL   74 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566667777777777777777777778889999999998888888765

>1skn_P DNA-binding domain of SKN-1; complex (transcription factor/DNA), transcription/DNA complex; HET: DNA LDA; 2.50A {Caenorhabditis elegans} SCOP: a.37.1.1

Probab=96.46  E-value=0.0014  Score=49.47  Aligned_cols=33  Identities=30%  Similarity=0.261  Sum_probs=28.2

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQRHLDELWS  113 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~~l~eLe~  113 (201)
                      ....|..||..+||.+|+++|+||...+++|+.
T Consensus        58 l~~ir~~RRR~KNr~AA~~CRkrK~~~~d~l~~   90 (92)
T 1skn_P           58 RQLIRKIRRRGKNKVAARTCRQRRTDRHDKMSH   90 (92)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhhc
Confidence            457789999999999999999999999888763

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=95.78  E-value=0.077  Score=42.06  Aligned_cols=59  Identities=15%  Similarity=0.188  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          103 RKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       103 RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +.++..+.|+.++..+..|...|+.++..+..++..+..|+..|+.++.+|+.++..+.
T Consensus        72 k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le  130 (138)
T 3hnw_A           72 KAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE  130 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566788888888888888888888888888888888888888888888888887775

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=95.68  E-value=0.044  Score=37.33  Aligned_cols=48  Identities=27%  Similarity=0.381  Sum_probs=41.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      .+.|-.||+.|+.||..|++++..-..++..|+.|-.-+|+-+..|..
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~lq~   52 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQLQG   52 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHcc
Confidence            467889999999999999999999999999999988877776665543

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=95.58  E-value=0.099  Score=38.51  Aligned_cols=56  Identities=14%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .-++.|+.+|..+-....-|+-+++.|+++...+..||..++.....|++....+.
T Consensus         6 ElleqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk   61 (81)
T 2jee_A            6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLK   61 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            34788999999999999999999999999999999999997776666666665554

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=94.97  E-value=0.12  Score=36.30  Aligned_cols=42  Identities=26%  Similarity=0.328  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLRE  148 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra  148 (201)
                      -+..-|++|.+|..-|..|..++..++.+++.+..||..||.
T Consensus        21 ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr~   62 (63)
T 2w6a_A           21 ALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLRQ   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhcc
Confidence            455668899999999999999999999999999999999983

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=94.44  E-value=0.21  Score=38.03  Aligned_cols=28  Identities=21%  Similarity=0.483  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 043159          136 HDRVLQENARLREEASDLRQMLTELQLS  163 (201)
Q Consensus       136 ~~~l~~EN~~Lrael~~Lr~~L~~l~~~  163 (201)
                      ..+...+=..|++++..|+.+|..|..+
T Consensus        70 ~~~~~~~~e~Lq~E~erLr~~v~~lEeg   97 (100)
T 1go4_E           70 RQRLREDHSQLQAECERLRGLLRAMERG   97 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3445566678888999999999888763

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=94.41  E-value=0.25  Score=37.81  Aligned_cols=45  Identities=29%  Similarity=0.310  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          110 ELWSHVVRLRTENHNLID-------KLNHVSESHDRVLQENARLREEASDLR  154 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~-------el~~L~~~~~~l~~EN~~Lrael~~Lr  154 (201)
                      +||..++.++.||..|+.       ++..|..++..|.+||..|+.+-...+
T Consensus        41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~~e~~~~~   92 (104)
T 3s9g_A           41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLLTENELHR   92 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345555555555444444       444455555555555555555544433

>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}

Probab=93.12  E-value=0.27  Score=33.98  Aligned_cols=39  Identities=28%  Similarity=0.283  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      +.++..|+..|-.|..+++.|..+|...++|+.+|++-+
T Consensus        10 e~q~~kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LL   48 (58)
T 3a2a_A           10 ERQLLRLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLL   48 (58)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            568889999999999999999999999999888877654

>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}

Probab=93.12  E-value=0.45  Score=31.87  Aligned_cols=39  Identities=28%  Similarity=0.289  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          112 WSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       112 e~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      +.++..|+.-|..|..++..|...|..+++|+.+|+.-+
T Consensus         3 eq~l~kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LL   41 (48)
T 3vmx_A            3 ERQILRLKQINIQLATKIQHLEFSCSEKEQEIERLNKLL   41 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence            578899999999999999999999999999988887654

>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}

Probab=92.69  E-value=1.5  Score=34.62  Aligned_cols=56  Identities=11%  Similarity=0.080  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          104 KQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE  159 (201)
Q Consensus       104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~  159 (201)
                      =.+.+++++.++..|..+...+..+++.+.++...+..++..|..++.+|...+..
T Consensus        80 L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~~  135 (138)
T 3hnw_A           80 LSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLETELND  135 (138)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34556666666666666666666666666666667777777777777777666544

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=92.02  E-value=0.18  Score=31.38  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      +..||.+|+.|..+|..|..++..|+.
T Consensus         2 M~QLE~kVEeLl~~n~~Le~EV~RLk~   28 (33)
T 3m48_A            2 MAQLEAKVEELLSKNWNLENEVARLKK   28 (33)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            456777777777777777776665543

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=91.81  E-value=0.26  Score=30.80  Aligned_cols=27  Identities=19%  Similarity=0.263  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      ++..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLE~kVEeLl~~n~~Le~eV~rLk   28 (34)
T 2oxj_A            2 RMXQLEXKVXELLXKNXHLEXEVXRLK   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            466777777777777766666655544

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=91.60  E-value=4.7  Score=32.70  Aligned_cols=75  Identities=9%  Similarity=-0.016  Sum_probs=50.1

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhh
Q 043159           87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLR-QMLTELQ  161 (201)
Q Consensus        87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr-~~L~~l~  161 (201)
                      .+.+.+-+.+.++.-......+.+-..-+..|..|...|..++..+..+...+..||..|-++...-. +.-..|+
T Consensus        70 I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~MN  145 (152)
T 3a7p_A           70 LAILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKKTEKETEAMN  145 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444455555666777888899999999999999999999999988887766543 3334444

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=91.56  E-value=1.8  Score=39.43  Aligned_cols=20  Identities=40%  Similarity=0.513  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhh
Q 043159          142 ENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       142 EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .-.+|+++...+++++..+.
T Consensus       559 ~~~~l~~e~~~~~~~~~~l~  578 (597)
T 3oja_B          559 KQAELRQETSLKRQKVKQLE  578 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444454444

>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}

Probab=90.83  E-value=1.1  Score=29.37  Aligned_cols=36  Identities=25%  Similarity=0.217  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQE  142 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~E  142 (201)
                      .+..|+.+|..|+.||..|+.+.-.-+.-+.-++.|
T Consensus         4 lvaqlenevaslenenetlkkknlhkkdliayleke   39 (49)
T 3he5_A            4 LVAQLENEVASLENENETLKKKNLHKKDLIAYLEKE   39 (49)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccHHHHHhcccHHHHHHHHHHH
Confidence            356789999999999999988765544444444443

>2c9l_Y EB1, zebra, BZLF1 trans-activator protein; viral protein, epstein-BARR virus, EBV; 2.25A {Human herpesvirus 4} SCOP: h.1.3.1 PDB: 2c9n_Y

Probab=90.70  E-value=1.6  Score=30.26  Aligned_cols=24  Identities=29%  Similarity=0.394  Sum_probs=18.5

Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHH
Q 043159           89 RMISNRESARRSRMRKQRHLDELW  112 (201)
Q Consensus        89 R~lsNRESARRSR~RKq~~l~eLe  112 (201)
                      ..-+||.++|++|.|=+..++...
T Consensus         5 kryknr~asrk~rakfkn~lqh~r   28 (63)
T 2c9l_Y            5 KRYKNRVAARKSRAKFKQLLQHYR   28 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999998877665443

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.67  E-value=2.7  Score=42.77  Aligned_cols=59  Identities=14%  Similarity=0.252  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          102 MRKQRHLDELWSHVVRLRTENHNLIDKLNHV----SESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       102 ~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L----~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ...++.+++|+.++..+..|...|..++..+    .++...|..||..|++++.+|...+...
T Consensus       987 ~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A          987 LSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555554444333    3455667888888888888887655544

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.55  E-value=2.1  Score=32.33  Aligned_cols=15  Identities=33%  Similarity=0.508  Sum_probs=5.4

Q ss_pred             HHHHHHHHHHHHHHH
Q 043159          139 VLQENARLREEASDL  153 (201)
Q Consensus       139 l~~EN~~Lrael~~L  153 (201)
                      ++.++..+..++.+|
T Consensus        45 aE~~~~~ie~ElEeL   59 (97)
T 2eqb_B           45 AEEEADKLNKEVEDL   59 (97)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            333333333333333

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=90.37  E-value=2.6  Score=30.71  Aligned_cols=53  Identities=23%  Similarity=0.252  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          109 DELWSHVVRLRTENHNLIDKLN-------HVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~-------~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .++..+|+.|-.||.+|...-+       .|..+.+.|..|+..|+.++..+++....+.
T Consensus         5 ~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~   64 (77)
T 2w83_C            5 EFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLE   64 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            4667788888888888876543       4556788899999999999999888887776

>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B

Probab=90.11  E-value=0.65  Score=29.33  Aligned_cols=28  Identities=18%  Similarity=0.335  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~   29 (36)
T 1kd8_B            2 KVKQLKAKVEELKSKLWHLKNKVARLKK   29 (36)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4677888888888877777777776654

>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}

Probab=89.86  E-value=2.2  Score=30.61  Aligned_cols=43  Identities=12%  Similarity=0.228  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASD  152 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~  152 (201)
                      ++..++..++.+|+.|..++..+...+..-..+-..++.++..
T Consensus         4 ~~~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk~   46 (72)
T 3cve_A            4 NSHMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLKT   46 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5667777777777777777777777766666555555555543

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=89.52  E-value=0.56  Score=29.27  Aligned_cols=27  Identities=0%  Similarity=0.094  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      ++..||.+|+.|-.+|..|..++..|+
T Consensus         2 RMnQLEdKVEeLl~~~~~Le~EV~RLk   28 (34)
T 3c3f_A            2 RMXQIEXKLEXILSXLYHXENEXARIX   28 (34)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            466777777777777766666666554

>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=89.26  E-value=0.027  Score=42.38  Aligned_cols=26  Identities=31%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             chHHHHHHHHHHhHHHHHHHHHHHHH
Q 043159           81 IIDERKQRRMISNRESARRSRMRKQR  106 (201)
Q Consensus        81 ~~deRR~RR~lsNRESARRSR~RKq~  106 (201)
                      ...-|..||.-+||.+|+++|+||..
T Consensus        62 l~lIrdiRRRgKNKvAAqnCRKRKld   87 (91)
T 2kz5_A           62 LALVRDIRRRGKNKVAAQNYRKRKLE   87 (91)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCCCCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34668899999999999999999854

>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}

Probab=88.98  E-value=1.2  Score=32.47  Aligned_cols=44  Identities=27%  Similarity=0.304  Sum_probs=27.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS  151 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~  151 (201)
                      .+++..++..++.+|+.|..++..+...+..-..+-..++.++.
T Consensus         8 ~e~~~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk   51 (79)
T 3cvf_A            8 REETQQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG   51 (79)
T ss_dssp             --CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777777777777777777666665555555555543

>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A

Probab=88.97  E-value=2.7  Score=32.08  Aligned_cols=30  Identities=27%  Similarity=0.297  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      -..+.+|+.+|..|+.||+.|+.+.+...+
T Consensus        64 ~~~v~eLe~everL~~ENq~L~~e~~~~~~   93 (104)
T 3s9g_A           64 DARVRELELELDRLRAENLQLLTENELHRQ   93 (104)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            578899999999999999999988776543

>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A

Probab=88.57  E-value=3.1  Score=30.27  Aligned_cols=43  Identities=9%  Similarity=0.175  Sum_probs=25.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      +.+|..++..|+.|...|+..++.+..++..+....+.+-..+
T Consensus        22 ~~~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL   64 (83)
T 2xdj_A           22 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI   64 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556666667777666666666666665555555444444443

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=88.44  E-value=0.75  Score=28.55  Aligned_cols=26  Identities=4%  Similarity=0.204  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVS  133 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~  133 (201)
                      +..||.+|+.|-.+|..|..++..|+
T Consensus         2 MnQLEdKvEeLl~~~~~Le~EV~RLk   27 (33)
T 3c3g_A            2 MKXIEXKLXEIXSKXYHXENXLARIK   27 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            45677777777666666666665544

>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1

Probab=88.24  E-value=0.7  Score=27.83  Aligned_cols=23  Identities=17%  Similarity=0.229  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 043159          135 SHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus       135 ~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      -+.++++||.+|++.+.+|-.++
T Consensus         7 llasleaenkqlkakveellakv   29 (31)
T 1p9i_A            7 LLASLEAENKQLKAKVEELLAKV   29 (31)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567888888888888876654

>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1

Probab=88.19  E-value=1.2  Score=31.59  Aligned_cols=36  Identities=28%  Similarity=0.363  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          125 LIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       125 L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      |..++..+......+..||..|+.++..|+..+..+
T Consensus        34 LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El~~l   69 (70)
T 1gd2_E           34 LETQVVTLKELHSSTTLENDQLRQKVRQLEEELRIL   69 (70)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            334444455555566777777777777777766543

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=87.76  E-value=1.4  Score=30.18  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          128 KLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +...+..+...|..+|..|+.++..|+..+..|.
T Consensus        24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk   57 (63)
T 1ci6_A           24 EQEALTGECKELEKKNEALKERADSLAKEIQYLK   57 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555666667777777777777766665553

>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...

Probab=87.56  E-value=0.74  Score=28.77  Aligned_cols=28  Identities=7%  Similarity=0.361  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~   29 (34)
T 2bni_A            2 RMKQIEDKLEEILSKGHHICNELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4566777777777777776666665543

>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1

Probab=87.51  E-value=2.1  Score=31.08  Aligned_cols=18  Identities=22%  Similarity=0.185  Sum_probs=10.1

Q ss_pred             cchHHHHHHHHHHhHHHH
Q 043159           80 RIIDERKQRRMISNRESA   97 (201)
Q Consensus        80 ~~~deRR~RR~lsNRESA   97 (201)
                      ...-||++|-.++++-.+
T Consensus        10 Hn~~ER~RR~~ln~~f~~   27 (88)
T 1nkp_A           10 HNVLERQRRNELKRSFFA   27 (88)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHH
Confidence            345566666566655444

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=87.44  E-value=1.9  Score=31.04  Aligned_cols=50  Identities=20%  Similarity=0.108  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQL  162 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~  162 (201)
                      +++.+||.+++.++.....|...+..-...+       ..|+.++..|..+|.++..
T Consensus        14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~I-------d~L~~ql~~L~~rl~~~~~   63 (78)
T 3efg_A           14 ARLVELETRLSFQEQALTELSEALADARLTG-------ARNAELIRHLLEDLGKVRS   63 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhh
Confidence            4677777777777777766666665554444       4455566666666666653

>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A

Probab=87.31  E-value=0.79  Score=28.96  Aligned_cols=28  Identities=14%  Similarity=0.287  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      ++..||.+|+.|..+|..|..++..|+.
T Consensus         2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~   29 (36)
T 1kd8_A            2 EVKQLEAEVEEIESEVWHLENEVARLEK   29 (36)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567888888888888877777776654

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=87.20  E-value=3.7  Score=32.12  Aligned_cols=52  Identities=15%  Similarity=0.163  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .|+.+..+-....++|..+|..|.+++....+|=.+||.+...|..++.+-.
T Consensus        61 SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~~~~~~r~~~~~  112 (121)
T 3mq7_A           61 SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLRRENQVLSVRIADKK  112 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhHhhhcc
Confidence            3443333333445555555555555555555555556655555555554443

>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*

Probab=86.99  E-value=0.83  Score=28.54  Aligned_cols=28  Identities=4%  Similarity=0.144  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RM~QLEdKVEeLl~~n~~Le~EV~RLk~   29 (34)
T 1uo4_A            2 RMKQIEDKGEEILSKLYHIENELARIKK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3566777777777777777776665543

>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A

Probab=86.93  E-value=5.7  Score=29.20  Aligned_cols=33  Identities=18%  Similarity=0.381  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          128 KLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      .+..|+.+++.+..||..|..++..|+..+.++
T Consensus        57 ~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~   89 (93)
T 3s4r_A           57 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRL   89 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555666666666666666666555544

>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D

Probab=86.86  E-value=0.96  Score=31.24  Aligned_cols=32  Identities=16%  Similarity=0.472  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          127 DKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      ..+..|..+...|..||..|+.++..|+..|.
T Consensus        30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~   61 (63)
T 2dgc_A           30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44566666777788899999999999888764

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=86.49  E-value=10  Score=30.69  Aligned_cols=65  Identities=14%  Similarity=0.099  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159           96 SARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus        96 SARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      +-+.-+......+..|+..+..-...++.|..++..|.-++..++.....|+++-..|-++|..-
T Consensus        72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~LV~RWM~r  136 (152)
T 3a7p_A           72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQLVARWLKK  136 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444555566666677777777777777888888888788888888888888887777777543

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=86.48  E-value=12  Score=30.71  Aligned_cols=62  Identities=16%  Similarity=0.230  Sum_probs=37.0

Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159           87 QRRMISNRESARRSRMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQ  155 (201)
Q Consensus        87 ~RR~lsNRESARRSR~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~  155 (201)
                      ...+..-=+.=|+.|.+-.+.+.+|+.++..|..|...++.       ....+..||..|-.++..|..
T Consensus        71 ~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~-------~~~k~~~e~r~L~Ekl~~lEK  132 (168)
T 3o0z_A           71 YYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKH-------NLEKVEGERKEAQDMLNHSEK  132 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence            33455555566677777777777777777666665555444       344555566666666555544

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=86.39  E-value=1.7  Score=29.52  Aligned_cols=35  Identities=20%  Similarity=0.399  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..+..|......+..+|..|+.++..|+..+..|.
T Consensus        22 ~~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk   56 (62)
T 1jnm_A           22 ERIARLEEKVKTLKAQNSELASTANMLREQVAQLK   56 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666667777888888888888887776664

>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A

Probab=86.38  E-value=0.94  Score=28.28  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      ++..||.+|+.|-.+|..|..++..|+.
T Consensus         2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~   29 (34)
T 2hy6_A            2 KVKQLADAVEELASANYHLANAVARLAK   29 (34)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4567788888877777777777666544

>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A

Probab=86.25  E-value=1.8  Score=31.28  Aligned_cols=28  Identities=25%  Similarity=0.366  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          134 ESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       134 ~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .....|..||..|+.++..|...+..|.
T Consensus        43 ~r~~~L~~eN~~L~~~v~~L~~E~~~Lr   70 (78)
T 1gu4_A           43 HKVLELTAENERLQKKVEQLSRELSTLR   70 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444455555555555555555554443

>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*

Probab=86.19  E-value=1.3  Score=27.62  Aligned_cols=30  Identities=17%  Similarity=0.364  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          129 LNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       129 l~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      ..+|..+...|..+|..|..++..|+..|.
T Consensus         3 MnQLE~kVEeLl~~n~~Le~eV~rLk~ll~   32 (34)
T 2oxj_A            3 MXQLEXKVXELLXKNXHLEXEVXRLKXLVX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            345666777788888888888888887663

>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...

Probab=85.93  E-value=1.3  Score=27.52  Aligned_cols=27  Identities=4%  Similarity=0.083  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSE  134 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~  134 (201)
                      +..||.+|+.|-.+|..|..++..++.
T Consensus         2 MnQLEdKVEell~~~~~le~EV~Rl~~   28 (33)
T 2wq1_A            2 MKQLEDKIEENTSKIYHNTNEIARNTK   28 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            567888888888877777777766543

>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1

Probab=85.83  E-value=1.4  Score=27.94  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          118 LRTENHNLIDKLNHVSESHDRVLQENARLRE  148 (201)
Q Consensus       118 L~~EN~~L~~el~~L~~~~~~l~~EN~~Lra  148 (201)
                      .-.||.+|..+++.-.+++.+|..||..|.+
T Consensus         5 ~L~ENekLhk~ie~KdeeIa~Lk~eN~eL~E   35 (37)
T 1t6f_A            5 ALKENEKLHKEIEQKDNEIARLKKENKELAE   35 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            3468999999999988999999999998864

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=85.81  E-value=1.7  Score=29.15  Aligned_cols=31  Identities=23%  Similarity=0.405  Sum_probs=16.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          113 SHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       113 ~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      ..|+.|+.||..|+.++..       |..++..|++++
T Consensus        19 ~d~eaLk~E~~eLk~k~~~-------L~~~~~el~~~l   49 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEA-------IVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHH
Confidence            4556666666655555543       344444444443

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=85.73  E-value=4.3  Score=27.20  Aligned_cols=23  Identities=22%  Similarity=0.390  Sum_probs=10.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 043159          109 DELWSHVVRLRTENHNLIDKLNH  131 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~  131 (201)
                      .+|..++..|...|..|..-+..
T Consensus        12 ~~l~~~l~~L~~rN~rL~~~L~~   34 (51)
T 3m91_A           12 HQLEARIDSLAARNSKLMETLKE   34 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555555444444443

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=85.70  E-value=6.2  Score=26.47  Aligned_cols=34  Identities=18%  Similarity=0.301  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          128 KLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      .+..|......+..+|..|+.++..|+..+..|.
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk   56 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLK   56 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555666677777777777777777666553

>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}

Probab=85.64  E-value=8.4  Score=27.95  Aligned_cols=61  Identities=21%  Similarity=0.250  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          101 RMRKQRHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       101 R~RKq~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      |+|=++.+..-..++..|+.....|..--..|..-+..+..|-..|...+..|+.+...|.
T Consensus        13 Rrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~   73 (78)
T 3iv1_A           13 RWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEELS   73 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677888888899999999999888888888888999999999999999999988876

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=85.47  E-value=2.5  Score=32.04  Aligned_cols=41  Identities=22%  Similarity=0.303  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 043159          127 DKLNHVSESHDRVLQENARLREEASDLRQMLTELQLSSPYT  167 (201)
Q Consensus       127 ~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~~~~~~~  167 (201)
                      .++..++++++.|..||..|+.++..|..+|....+.+-|+
T Consensus        12 e~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~   52 (100)
T 1go4_E           12 EEADTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYD   52 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence            36777888888999999999999999999998876656664

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=85.23  E-value=5.7  Score=33.08  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE  159 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~  159 (201)
                      +..|+.++..|+..+..|...+..|...++.++...+.+.+-+.++..+|..
T Consensus        90 ~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln~  141 (189)
T 2v71_A           90 VSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLNQ  141 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            4555555555555566666666655555666666556655666666555543

>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A

Probab=84.97  E-value=1.3  Score=38.64  Aligned_cols=27  Identities=22%  Similarity=0.431  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHV  132 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L  132 (201)
                      ..+.+|+.++..|...|..|...+..+
T Consensus        54 ~~l~eL~~ql~~L~arNe~L~~~Lk~a   80 (251)
T 3m9b_A           54 RDIHQLEARIDSLAARNSKLMETLKEA   80 (251)
T ss_dssp             HHHHHHHHHHHHHTTTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666665555554443

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=84.88  E-value=6.8  Score=28.54  Aligned_cols=42  Identities=24%  Similarity=0.287  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      ..-.||..|..++..+...+..+..||..|+.-+...+....
T Consensus        31 eaL~EN~~Lh~~ie~~~eEi~~LkeEN~~L~el~~~~~~lae   72 (79)
T 2zxx_A           31 EALKENEKLHKEIEQKDSEIARLRKENKDLAEVAEHVQYMAE   72 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444689999999999999999999999998877666555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=84.85  E-value=11  Score=34.12  Aligned_cols=42  Identities=14%  Similarity=0.102  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .+..+++.+..+++...+.++.+..|...|+.++.+.++++.
T Consensus       520 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~  561 (597)
T 3oja_B          520 FKLRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQA  561 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHH
Confidence            333333334434433334444444444444444443333333

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=84.83  E-value=1.9  Score=28.96  Aligned_cols=24  Identities=17%  Similarity=0.178  Sum_probs=10.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          137 DRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       137 ~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      ..|..||..|++++..|...+..+
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el   45 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKL   45 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433

>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}

Probab=84.77  E-value=1.7  Score=31.61  Aligned_cols=42  Identities=26%  Similarity=0.355  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      ++|-.+|++|..|+..|+.++..+.+....+...+..|.+++
T Consensus        33 ~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl   74 (77)
T 2w83_C           33 NDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL   74 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667777777777777766666665555555555554444

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=84.55  E-value=0.79  Score=33.37  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          120 TENHNLIDKLNHVSESHDRVLQENARLREEA  150 (201)
Q Consensus       120 ~EN~~L~~el~~L~~~~~~l~~EN~~Lrael  150 (201)
                      .|...|+.+|..|.++...|+.||..||.-+
T Consensus        15 EEVevLKe~I~EL~e~~~qLE~EN~~Lk~~a   45 (78)
T 1dip_A           15 EEVEILKEQIRELVEKNSQLERENTLLKTLA   45 (78)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3556677777788888888888999888653

>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A

Probab=84.13  E-value=1.2  Score=27.63  Aligned_cols=29  Identities=17%  Similarity=0.384  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          130 NHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .+|..+...|..+|..|..++..|+..|.
T Consensus         3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~   31 (33)
T 3m48_A            3 AQLEAKVEELLSKNWNLENEVARLKKLVG   31 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence            35566777888899999999998887653

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=83.57  E-value=3.7  Score=29.43  Aligned_cols=45  Identities=20%  Similarity=0.161  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          110 ELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       110 eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +|+.++..|+..-.-+-.-++.|       -..=.+-..++..|+++|..|.
T Consensus        11 ~le~Ri~~LE~klAfqE~tIeeL-------n~~v~~Qq~~Id~L~~ql~~L~   55 (78)
T 3efg_A           11 ELEARLVELETRLSFQEQALTEL-------SEALADARLTGARNAELIRHLL   55 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666655544444333332       2222333445566666666665

>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}

Probab=82.67  E-value=6  Score=30.19  Aligned_cols=12  Identities=33%  Similarity=0.750  Sum_probs=6.3

Q ss_pred             hHHHHHHHHHHh
Q 043159           82 IDERKQRRMISN   93 (201)
Q Consensus        82 ~deRR~RR~lsN   93 (201)
                      .++|=++-|++|
T Consensus         7 vEEKyrKAMVsn   18 (103)
T 4h22_A            7 VEEKYKKAMVSN   18 (103)
T ss_dssp             -CCTHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            345555566664

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=82.64  E-value=11  Score=38.26  Aligned_cols=26  Identities=15%  Similarity=0.194  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 043159          135 SHDRVLQENARLREEASDLRQMLTEL  160 (201)
Q Consensus       135 ~~~~l~~EN~~Lrael~~Lr~~L~~l  160 (201)
                      .+..+..+...|.+++.++...+..+
T Consensus       914 ~l~~l~~~~~~Le~~l~ele~elee~  939 (1184)
T 1i84_S          914 MRVRLAAKKQELEEILHEMEARIEEE  939 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444555555555555554444

>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}

Probab=81.78  E-value=8.7  Score=27.53  Aligned_cols=58  Identities=21%  Similarity=0.223  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          104 KQRHLDELWSHVVRLRTENHNLIDKLNHV------SESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       104 Kq~~l~eLe~qV~~L~~EN~~L~~el~~L------~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      -++.++.|+.++..|+.+...|..++..-      -..+..+..+=..+..++..+-.++..|.
T Consensus        20 eqrEle~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~~e~eLe~~~erWeeLe   83 (89)
T 2lw1_A           20 LQRELEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAAAEQELEQAFERWEYLE   83 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35679999999999999999999998642      24577788888888888888888877664

>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1

Probab=81.72  E-value=13  Score=27.24  Aligned_cols=21  Identities=29%  Similarity=0.488  Sum_probs=8.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 043159          138 RVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       138 ~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .|+.||..|++++..|...+.
T Consensus        47 ~Le~EN~~Lr~~v~~L~~E~~   67 (87)
T 1hjb_A           47 ELTAENERLQKKVEQLSRELS   67 (87)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444443333

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=81.58  E-value=22  Score=29.56  Aligned_cols=45  Identities=20%  Similarity=0.195  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEAS  151 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~  151 (201)
                      ++-+||..-..|+.....+...+..+..+++.+...|+-|-.++.
T Consensus       110 ~ireLEq~NDdlEr~~R~~~~SleD~e~kln~aiEr~alLE~El~  154 (189)
T 2v71_A          110 YVRELEQANDDLERAKRATIMSLEDFEQRLNQAIERNAFLESELD  154 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333333333333444444444444444444444443

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B

Probab=81.45  E-value=15  Score=27.58  Aligned_cols=71  Identities=17%  Similarity=0.163  Sum_probs=51.6

Q ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159           91 ISNRESARRSRMRKQRHLDELWSHVVRLR---TENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus        91 lsNRESARRSR~RKq~~l~eLe~qV~~L~---~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ..|-.+|-..=..|+..+++|...+..++   .....|+.++......+..-.+.=..+..+...|...|..++
T Consensus         8 ~~~L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~aERadREkl~~eKe~L~~ql~~lq   81 (94)
T 3jsv_C            8 RQQLQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQAERHAREKLVEKKEYLQEQLEQLQ   81 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            34556677777779999999999888888   566778888888777766666655666666666666666655

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}

Probab=81.38  E-value=13  Score=28.49  Aligned_cols=53  Identities=13%  Similarity=0.183  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          107 HLDELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTE  159 (201)
Q Consensus       107 ~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~  159 (201)
                      .+..|+.++..|+..+..|...+..|.+.++.++...+..-+-+.++..++..
T Consensus        36 ~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E~k~n~   88 (111)
T 2v66_B           36 QVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFEQRLNQ   88 (111)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHHHHHHH
Confidence            46668888888888888888888888888888888887777777777777654

>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1

Probab=81.34  E-value=13  Score=27.24  Aligned_cols=37  Identities=24%  Similarity=0.314  Sum_probs=25.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          117 RLRTENHNLIDKLNHVSESHDRVLQENARLREEASDL  153 (201)
Q Consensus       117 ~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~L  153 (201)
                      ..-.||..|..++..+.+.+..+..+|..|+.-+...
T Consensus        43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae~~   79 (83)
T 1uii_A           43 EALKENEKLHKEIEQKDNEIARLKKENKELAEVAEHV   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445788888888877777777777777666554443

>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*

Probab=81.24  E-value=2.9  Score=25.93  Aligned_cols=29  Identities=3%  Similarity=0.172  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          130 NHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       130 ~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .+|..+...+..+|..|..++..|+..|.
T Consensus         3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~   31 (33)
T 3c3g_A            3 KXIEXKLXEIXSKXYHXENXLARIKXLLX   31 (33)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            45566777788899999999998887763

>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}

Probab=80.96  E-value=2.9  Score=27.22  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          105 QRHLDELWSHVVRLRTENHNLIDKL  129 (201)
Q Consensus       105 q~~l~eLe~qV~~L~~EN~~L~~el  129 (201)
                      .....+||.+|..|+.||+.|+.-+
T Consensus        16 e~~naeLEervstLq~EN~mLRqvl   40 (42)
T 2oqq_A           16 ENKNSELEERLSTLQNENQMLRHIL   40 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            4567889999999999999887654

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=80.90  E-value=15  Score=27.23  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          108 LDELWSHVVRLRTENHNLIDKLNHVSESHDR  138 (201)
Q Consensus       108 l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~  138 (201)
                      ...|..+++.|..|+..+..++..+++++..
T Consensus        57 ~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~   87 (90)
T 2wt7_B           57 KTQLIQQVEQLKQEVSRLARERDAYKVKSEK   87 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456666666666666666666666665554

>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1

Probab=80.89  E-value=3  Score=26.01  Aligned_cols=30  Identities=10%  Similarity=0.259  Sum_probs=23.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          129 LNHVSESHDRVLQENARLREEASDLRQMLT  158 (201)
Q Consensus       129 l~~L~~~~~~l~~EN~~Lrael~~Lr~~L~  158 (201)
                      .++|..+...+..+|..|..++..|+..|.
T Consensus         3 MnQLEdKVEeLl~~~~~Le~EV~RLk~ll~   32 (34)
T 3c3f_A            3 MXQIEXKLEXILSXLYHXENEXARIXKLLX   32 (34)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            345666777888899999999998887763

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=80.65  E-value=6.8  Score=35.43  Aligned_cols=35  Identities=9%  Similarity=0.068  Sum_probs=15.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL  140 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~  140 (201)
                      ..+.+|+.++..|+.+...+..++..+.+++...+
T Consensus        10 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~   44 (403)
T 4etp_A           10 EKIAALKEKIAALKEKIKDTELGMKELNEILIKEE   44 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=80.37  E-value=21  Score=36.37  Aligned_cols=56  Identities=23%  Similarity=0.272  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhh
Q 043159          106 RHLDELWSHVVRLRTENHNLIDKLNHVSESHDRVL----QENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       106 ~~l~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~----~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      +.+..|+.+++.|+.+.+.+..+...+.+.+..+.    ..-..|+.+...|++.+.++.
T Consensus       984 ~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A          984 NRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444444444444444444444444333322    222334444445555555444

>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}

Probab=80.35  E-value=8.2  Score=27.81  Aligned_cols=50  Identities=14%  Similarity=0.240  Sum_probs=37.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 043159          109 DELWSHVVRLRTENHNLIDKLNHVSESHDRVLQENARLREEASDLRQMLTELQ  161 (201)
Q Consensus       109 ~eLe~qV~~L~~EN~~L~~el~~L~~~~~~l~~EN~~Lrael~~Lr~~L~~l~  161 (201)
                      ++||.+|..|+.--..|..++..|..++.   +-...||+++..|..++....
T Consensus         3 ~dlEEKv~~LE~sld~LQTrfARLLaEy~---ssQ~KLKqRit~LE~~~~~~~   52 (74)
T 3swf_A            3 MGLEEKVTRMESSVDLLQTRFARILAEYE---SMQQKLKQRLTKVEKFLKPLI   52 (74)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhcccC
Confidence            46788888888877777777776655443   335689999999999998865

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=80.23  E-value=1.7  Score=29.24  Aligned_cols=30  Identities=17%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 043159          128 KLNHVSESHDRVLQENARLREEASDLRQML  157 (201)
Q Consensus       128 el~~L~~~~~~l~~EN~~Lrael~~Lr~~L  157 (201)
                      .+..|..+...|..||..|+.++..|++.+
T Consensus        23 ~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~   52 (55)
T 1dh3_A           23 YVKSLENRVAVLENQNKTLIEELKALKDLY   52 (55)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355666677788889999999998887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	201
d1sknp_	74	Skn-1 {Caenorhabditis elegans [TaxId: 6239]}	93.82

>d1sknp_ a.37.1.1 (P:) Skn-1 {Caenorhabditis elegans [TaxId: 6239]}

class: All alpha proteins
fold: A DNA-binding domain in eukaryotic transcription factors
superfamily: A DNA-binding domain in eukaryotic transcription factors
family: A DNA-binding domain in eukaryotic transcription factors
domain: Skn-1
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.82  E-value=0.013  Score=40.81  Aligned_cols=30  Identities=33%  Similarity=0.353  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 043159           82 IDERKQRRMISNRESARRSRMRKQRHLDEL  111 (201)
Q Consensus        82 ~deRR~RR~lsNRESARRSR~RKq~~l~eL  111 (201)
                      .--|..||.=+||.+|+++|+||....++|
T Consensus        45 ~lirDIRRRGKNKvAAqnCRKRKld~~d~l   74 (74)
T d1sknp_          45 QLIRKIRRRGKNKVAARTCRQRRTDRHDKM   74 (74)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhhhhhccC
Confidence            345778899999999999999998876653