Citrus Sinensis ID: 043161

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440----
MEEPLLNGGAVIGCPTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
cccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccEEEccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHccccHHHHHEEEEHHHHHHHHHHHHHHHHHHHcccccEEEEcc
meepllnggavigcptaadyepvknfkeakSVFWTETVKMWKIATPIVFNILCnygtnsftnIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCllpiycfaspilklLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVsnelglghpraakYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
meepllnggavigcptaadyepvkNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
MEEPLLNGGAVIGCPTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
******NGGAVIGCPTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLH**
**EP***********************EAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
MEEPLLNGGAVIGCPTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
**********************VKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEEPLLNGGAVIGCPTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVTVYLHTL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query444 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.905 0.792 0.398 4e-81
Q9LUH3469 MATE efflux family protei no no 0.943 0.893 0.320 2e-56
Q9LUH2477 MATE efflux family protei no no 0.831 0.773 0.350 8e-56
Q9SIA1477 MATE efflux family protei no no 0.945 0.880 0.308 4e-51
Q8RWF5483 MATE efflux family protei no no 0.952 0.875 0.312 1e-50
Q8GXM8476 MATE efflux family protei no no 0.952 0.888 0.301 6e-50
Q9SIA3476 MATE efflux family protei no no 0.959 0.894 0.307 8e-50
Q9SIA5476 MATE efflux family protei no no 0.898 0.838 0.313 1e-49
Q9SIA4476 MATE efflux family protei no no 0.959 0.894 0.305 7e-47
A1L1P9 590 Multidrug and toxin extru yes no 0.905 0.681 0.299 7e-41
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  302 bits (773), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 161/404 (39%), Positives = 256/404 (63%), Gaps = 2/404 (0%)

Query: 36  ETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMG 95
           E+  +W ++   +   + NY  +  T +F GH+G ++L+  +I+   I   ++G MLGM 
Sbjct: 51  ESKLLWTLSGASIVVSVLNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMA 110

Query: 96  SALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADL 155
           SA++T+CGQA+GA Q   +G+  QR+ ++     V L  +Y ++ PILK +GQ   IA  
Sbjct: 111 SAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHE 170

Query: 156 AGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGM 215
              F    IPQ+++ A+  P Q+FLQAQ+ V+  A++     ++H ++ ++   V D+G+
Sbjct: 171 GQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGL 230

Query: 216 TGAAIAYDISSWIIAIGQVIYVI--GWCKETWHGLSRAAFIEIWAFVRLSLASAVMLCLE 273
            GAA+    S W++     +Y++    CKETW G S  AF  IW + +L++ASAVMLCLE
Sbjct: 231 LGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLE 290

Query: 274 IWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRA 333
           IWY   ++I++G L N  +++ ++S+CM    W+    +G++AAISVRVSNELG G+PR 
Sbjct: 291 IWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNPRV 350

Query: 334 AKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSV 393
           A  SV V    ++LI  +  VI+L+ +   +  FTS AE+  AV+ L  LL +++ LN +
Sbjct: 351 AMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLNGI 410

Query: 394 QPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGV 437
           QP++SGVAIG GWQA+VAY+N+ +YY+ GLP+G +LG+  +LGV
Sbjct: 411 QPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGV 454
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
255545210489 multidrug resistance pump, putative [Ric 0.979 0.889 0.789 0.0
359490480489 PREDICTED: protein TRANSPARENT TESTA 12- 0.984 0.893 0.742 0.0
297745360 950 unnamed protein product [Vitis vinifera] 0.945 0.442 0.738 0.0
356575992494 PREDICTED: protein TRANSPARENT TESTA 12- 0.984 0.884 0.708 0.0
312282213488 unnamed protein product [Thellungiella h 0.943 0.858 0.751 0.0
225544292493 anthocyanin permease 1 [Vitis vinifera] 0.984 0.886 0.707 0.0
449519024509 PREDICTED: LOW QUALITY PROTEIN: protein 0.970 0.846 0.720 0.0
449456472523 PREDICTED: protein TRANSPARENT TESTA 12- 0.970 0.824 0.720 0.0
225464547543 PREDICTED: protein TRANSPARENT TESTA 12 0.984 0.804 0.710 1e-180
350534958506 uncharacterized protein LOC543899 [Solan 0.977 0.857 0.690 1e-180
>gi|255545210|ref|XP_002513666.1| multidrug resistance pump, putative [Ricinus communis] gi|223547574|gb|EEF49069.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  704 bits (1817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 345/437 (78%), Positives = 385/437 (88%), Gaps = 2/437 (0%)

Query: 1   MEEPLLNGGAVIGCPTAADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSF 60
           ME PLL      G     DY PVK+FK+ KSVFWTETVK+WKIATPIVFNI+C YG NS 
Sbjct: 1   MEAPLLTPSLSAG--DDEDYTPVKSFKDIKSVFWTETVKIWKIATPIVFNIMCQYGINSV 58

Query: 61  TNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQR 120
           TNIFVGHIG+ ELS+V ISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLG+YMQR
Sbjct: 59  TNIFVGHIGDFELSAVAISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGIYMQR 118

Query: 121 SWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFL 180
           SW+IL +TC+ LLPIY FA+PILKLLGQE+ +ADLAGQFTIL IPQLFSLA+NFPTQKFL
Sbjct: 119 SWIILWITCIFLLPIYVFATPILKLLGQEDSVADLAGQFTILIIPQLFSLAVNFPTQKFL 178

Query: 181 QAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGW 240
           QAQSKV   AWIGFVA ++HI +L++ IYVF WG +GAAIAYDI++W ++I QV+YVIGW
Sbjct: 179 QAQSKVRVLAWIGFVAFILHIPLLWLLIYVFGWGTSGAAIAYDITNWGMSIAQVVYVIGW 238

Query: 241 CKETWHGLSRAAFIEIWAFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVC 300
           CKE W GLS +AF EIWAFVRLSLASAVMLCLEIWYMMSII+LTGHLDNA++AVGSLS+C
Sbjct: 239 CKEGWTGLSSSAFKEIWAFVRLSLASAVMLCLEIWYMMSIIVLTGHLDNAVIAVGSLSIC 298

Query: 301 MNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITK 360
           MN NGWEAMLFIG+NAAISVRVSNELG GHPRAAKYSVYVT+FQS LIG+L MVIILITK
Sbjct: 299 MNFNGWEAMLFIGVNAAISVRVSNELGSGHPRAAKYSVYVTIFQSFLIGLLSMVIILITK 358

Query: 361 DYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYI 420
           D+FAIIFT+S  +Q AV+KLAFLLGITMVLNS+QPVI GVAIG GWQA+VAYINIG YYI
Sbjct: 359 DHFAIIFTNSKAMQVAVSKLAFLLGITMVLNSIQPVIGGVAIGSGWQALVAYINIGCYYI 418

Query: 421 FGLPLGYLLGYTANLGV 437
           FGLPLG+ LGY   LGV
Sbjct: 419 FGLPLGFFLGYKTKLGV 435

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359490480|ref|XP_002272620.2| PREDICTED: protein TRANSPARENT TESTA 12-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|297745360|emb|CBI40440.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356575992|ref|XP_003556119.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|312282213|dbj|BAJ33972.1| unnamed protein product [Thellungiella halophila] Back     alignment and taxonomy information
>gi|225544292|gb|ACN91542.1| anthocyanin permease 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449519024|ref|XP_004166535.1| PREDICTED: LOW QUALITY PROTEIN: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449456472|ref|XP_004145973.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225464547|ref|XP_002272692.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] Back     alignment and taxonomy information
>gi|350534958|ref|NP_001234424.1| uncharacterized protein LOC543899 [Solanum lycopersicum] gi|33867697|gb|AAQ55183.1| putative anthocyanin permease [Solanum lycopersicum] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query444
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.945 0.774 0.697 7.1e-164
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.912 0.836 0.519 4.4e-116
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.943 0.841 0.502 1.2e-113
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.943 0.838 0.509 1.5e-113
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.950 0.808 0.494 3.6e-112
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.941 0.811 0.467 3.1e-106
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.905 0.827 0.486 1.3e-102
TAIR|locus:2206960494 AT1G33110 "AT1G33110" [Arabido 0.918 0.825 0.442 9.4e-98
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.903 0.792 0.459 1.5e-97
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.894 0.792 0.451 4.7e-96
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
 Identities = 293/420 (69%), Positives = 360/420 (85%)

Query:    18 ADYEPVKNFKEAKSVFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVT 77
             AD+ P+++F++AK V   ET K+W+IA PI FNILCNYG NSFT+IFVGHIG++ELS+V 
Sbjct:    70 ADFPPIQSFRDAKLVCVVETSKLWEIAAPIAFNILCNYGVNSFTSIFVGHIGDLELSAVA 129

Query:    78 ISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYC 137
             I+LSV+  FSFGF+LGM SALETLCGQAFGAGQ+ MLGVYMQRSWLIL  T VCLLP+Y 
Sbjct:   130 IALSVVSNFSFGFLLGMASALETLCGQAFGAGQMDMLGVYMQRSWLILLGTSVCLLPLYI 189

Query:   138 FASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVAL 197
             +A+P+L LLGQE +IA+++G+FT   IPQ+F+LAINFPTQKFLQ+QSKV   AWIGF AL
Sbjct:   190 YATPLLILLGQEPEIAEISGKFTTQIIPQMFALAINFPTQKFLQSQSKVGIMAWIGFFAL 249

Query:   198 VVHIVMLYVFIYVFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETWHGLSRAAFIEIW 257
              +HI +LY+FI VF WG+ GAA A+D+S+W IAI QV+YV+GWCK+ W GLS  AF ++W
Sbjct:   250 TLHIFILYLFINVFKWGLNGAAAAFDVSAWGIAIAQVVYVVGWCKDGWKGLSWLAFQDVW 309

Query:   258 AFVRLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAA 317
              F++LS ASAVMLCLEIWY M+II+LTGHL++ ++AVGSLS+CMN+NGWE MLFIGINAA
Sbjct:   310 PFLKLSFASAVMLCLEIWYFMTIIVLTGHLEDPVIAVGSLSICMNINGWEGMLFIGINAA 369

Query:   318 ISVRVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAV 377
             ISVRVSNELG GHPRAAKYSV VTV +SL+IGV+  ++ILIT+D FA+IFT S E+++AV
Sbjct:   370 ISVRVSNELGSGHPRAAKYSVIVTVIESLVIGVVCAIVILITRDDFAVIFTESEEMRKAV 429

Query:   378 AKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGV 437
             A LA+LLGITM+LNS+QPVISGVA+GGGWQA VAYIN+  YY FGLPLG+LLGY  +LGV
Sbjct:   430 ADLAYLLGITMILNSLQPVISGVAVGGGWQAPVAYINLFCYYAFGLPLGFLLGYKTSLGV 489
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009860 "pollen tube growth" evidence=RCA
GO:0030048 "actin filament-based movement" evidence=RCA
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2206960 AT1G33110 "AT1G33110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-134
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 4e-47
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 7e-46
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 6e-39
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 2e-27
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 2e-26
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-25
pfam01554161 pfam01554, MatE, MatE 5e-25
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 7e-24
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 3e-23
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 1e-22
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 8e-21
pfam01554161 pfam01554, MatE, MatE 7e-20
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 8e-19
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-15
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 4e-15
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 2e-11
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 3e-09
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 3e-09
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-08
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 1e-08
PRK09575453 PRK09575, vmrA, multidrug efflux pump VmrA; Review 5e-08
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 8e-08
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 2e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 1e-06
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 5e-06
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-05
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 9e-05
cd13144434 cd13144, MATE_like_4, Uncharacterized subfamily of 9e-05
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 2e-04
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 4e-04
cd13128402 cd13128, MATE_Wzx_like, Wzx, a subfamily of the mu 4e-04
cd13145440 cd13145, MATE_like_5, Uncharacterized subfamily of 6e-04
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 0.003
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  393 bits (1012), Expect = e-134
 Identities = 158/404 (39%), Positives = 252/404 (62%), Gaps = 3/404 (0%)

Query: 36  ETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMG 95
           E  K+ ++A P+V   L  Y  +  + +FVGH+G++EL++ +++ S      F  +LG+ 
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 96  SALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADL 155
           SAL+TLCGQAFGA    ++GVY+QR+ +IL + CV +  ++    PIL LLGQ+ +IA L
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 156 AGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIYVFDWGM 215
           AG++    IP LF+ A+  P +++LQAQ  V    +I  VAL+++I++ Y+ ++V   G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 216 TGAAIAYDISSWIIAIGQVIYVIGW--CKETWHGLSRAAFIEIWAFVRLSLASAVMLCLE 273
            GAA+A  IS W+I +  ++Y+      K TW G SR AF     F++L++ SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 274 IWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRA 333
            W    +++L G L    VA+ + S+C+       M+ +GI+ A SVRV NELG G+P+ 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 334 AKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSV 393
           AK +  V +  SL+IGV+  +++L+ +D +A +FTS  E+   VA L  +L +  + + +
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 394 QPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGV 437
           Q V+SGV  G G Q + AY+N+ +YY+ GLP+G LL +   LG+
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGL 403

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240549 cd13144, MATE_like_4, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240533 cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240550 cd13145, MATE_like_5, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 444
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.98
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
PRK10459 492 colanic acid exporter; Provisional 99.96
COG2244480 RfbX Membrane protein involved in the export of O- 99.95
PRK00187464 multidrug efflux protein NorA; Provisional 99.91
PRK01766456 multidrug efflux protein; Reviewed 99.89
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 99.89
PRK10189478 MATE family multidrug exporter; Provisional 99.88
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 99.87
TIGR01695502 mviN integral membrane protein MviN. This model re 99.86
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.83
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.8
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.8
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.78
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.77
PRK10459492 colanic acid exporter; Provisional 99.75
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.75
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.74
PRK15099416 O-antigen translocase; Provisional 99.73
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.68
COG2244480 RfbX Membrane protein involved in the export of O- 99.65
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.63
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.08
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 99.03
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 99.02
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.79
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.69
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.6
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.27
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 97.57
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.48
COG4267467 Predicted membrane protein [Function unknown] 97.32
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 96.74
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 96.11
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=6.1e-54  Score=414.01  Aligned_cols=407  Identities=24%  Similarity=0.371  Sum_probs=383.1

Q ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcc
Q 043161           33 FWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQVH  112 (444)
Q Consensus        33 ~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~~  112 (444)
                      +++..|+++++++|.+++++...+++.+|+.++||+|++++++.+++.++...+ ..+..|++.+.++.++|++|+||++
T Consensus        12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~   90 (455)
T COG0534          12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK   90 (455)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence            456899999999999999999999999999999999999999999999998755 6799999999999999999999999


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161          113 MLGVYMQRSWLILSVTCVCLLPI-YCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW  191 (444)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  191 (444)
                      ++++..++++.++++.+++..++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+..++.+.+|+.||+|.+++
T Consensus        91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~  170 (455)
T COG0534          91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY  170 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence            99999999999999999777754 89999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHHhhh---hhhhccCCHHhHHhHHHHHHHHhHH
Q 043161          192 IGFVALVVHIVMLYVFIYV-FD-WGMTGAAIAYDISSWIIAIGQVIYVIGWC---KETWHGLSRAAFIEIWAFVRLSLAS  266 (444)
Q Consensus       192 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~  266 (444)
                      .++++.++|+++|++++++ ++ +|+.|+++||++++.+..++..++++|+.   .....+..+.+++.+|++++.|+|.
T Consensus       171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~  250 (455)
T COG0534         171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI  250 (455)
T ss_pred             HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence            9999999999999999998 57 99999999999999999999999998543   2222333344568899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 043161          267 AVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVFQSL  346 (444)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~~~~  346 (444)
                      .+++..+...+...+.+++++|+  .++|+|+++.++.++.++++.|++++..+.+++++|++|++++++..+.+.+++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~G~--~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~  328 (455)
T COG0534         251 FLESLSESLGFLLLTLFVARLGT--VALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL  328 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999995  4667999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhHHHH
Q 043161          347 LIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLG  426 (444)
Q Consensus       347 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~  426 (444)
                      .++...++++.++++++.++|++|+|+.+.+..++++..+..++++.+....+.+|+.||+|.+++.++.+.|++.+|+.
T Consensus       329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~  408 (455)
T COG0534         329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA  408 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCceEEecc
Q 043161          427 YLLGYTANLGVTVYLHT  443 (444)
Q Consensus       427 ~~l~~~~~~~~~g~~~~  443 (444)
                      |++.+++ +|..|+|.+
T Consensus       409 ~~l~~~~-~g~~Gvw~~  424 (455)
T COG0534         409 YLLGFFF-LGLAGVWIG  424 (455)
T ss_pred             HHHhhhc-ccchHHHHH
Confidence            9999987 899999875

>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 8e-18
4huk_A459 Mate Transporter Norm-ng In Complex With Tpp And Mo 6e-07
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 88.2 bits (217), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 90/412 (21%), Positives = 185/412 (44%), Gaps = 19/412 (4%)
Query: 33  FWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSV-IGTFSFGFM 91
           +  E   + K+ATP++   +   G      I  G +  I++++V+I+ S+ + +  FG  
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFG-- 64
Query: 92  LGMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQ 151
           +G+  AL  +  Q  GAG+ H +   + +  ++  +  V ++ +      I++ +  EE 
Sbjct: 65  VGLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEA 124
Query: 152 IADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIY-- 209
           +A     +    I  + +  +    + F    S       IGF+ L+++I + ++F+Y  
Sbjct: 125 MATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGK 184
Query: 210 --VFDWGMTGAAIAYDISSWIIAIGQVIYVIGWCK-------ETWHGLSRAAFIEIWAFV 260
               + G  G  +A  I  WI+ +  + Y++   +       ET+H       I ++   
Sbjct: 185 FGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLF--- 241
Query: 261 RLSLASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISV 320
           RL    A  L  E+     + +L   L + +VA  +  V +N +    M  + I AA+S+
Sbjct: 242 RLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSI 299
Query: 321 RVSNELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKL 380
           RV ++LG    + A  +  V +   L    +  ++ ++ ++  A+++T +  +     +L
Sbjct: 300 RVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQL 359
Query: 381 AFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYT 432
                I   +++VQ V +G   G      + +    SY++ GLP GY+LG T
Sbjct: 360 LLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMT 411
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody Length = 459 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query444
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-65
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 3e-08
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  216 bits (553), Expect = 1e-65
 Identities = 87/414 (21%), Positives = 180/414 (43%), Gaps = 11/414 (2%)

Query: 33  FWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFML 92
           +  E   + K+ATP++   +   G      I  G +  I++++V+I+ S+       F +
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGV 65

Query: 93  GMGSALETLCGQAFGAGQVHMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQI 152
           G+  AL  +  Q  GAG+ H +   + +  ++  +  V ++ +      I++ +  EE +
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 153 ADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAWIGFVALVVHIVMLYVFIY--- 209
           A     +    I  + +  +    + F    S       IGF+ L+++I + ++F+Y   
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185

Query: 210 -VFDWGMTGAAIAYDISSWIIAIGQVIYVIGW----CKETWHGLSRAAFIEIWAFVRLSL 264
              + G  G  +A  I  WI+ +  + Y++        + +    +    E+    RL  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245

Query: 265 ASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSN 324
             A  L  E+     + +L   L + +VA  +  V +N +    M  + I AA+S+RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGH 303

Query: 325 ELGLGHPRAAKYSVYVTVFQSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLL 384
           +LG    + A  +  V +   L    +  ++ ++ ++  A+++T +  +     +L    
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363

Query: 385 GITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGLPLGYLLGYTANLGVT 438
            I   +++VQ V +G   G      + +    SY++ GLP GY+LG T  L   
Sbjct: 364 AIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query444
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 99.87
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=3.6e-47  Score=372.32  Aligned_cols=409  Identities=22%  Similarity=0.362  Sum_probs=374.6

Q ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCc
Q 043161           32 VFWTETVKMWKIATPIVFNILCNYGTNSFTNIFVGHIGEIELSSVTISLSVIGTFSFGFMLGMGSALETLCGQAFGAGQV  111 (444)
Q Consensus        32 ~~~~~~~~i~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~is~~~g~~~~  111 (444)
                      ..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++.... ..+..|++++..+.++|++|++|+
T Consensus         6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~   84 (460)
T 3mkt_A            6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ   84 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence            3457889999999999999999999999999999999999999999999997654 567889999999999999999999


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHcCChhHHHH
Q 043161          112 HMLGVYMQRSWLILSVTCVCLLPIYCFASPILKLLGQEEQIADLAGQFTILTIPQLFSLAINFPTQKFLQAQSKVSAFAW  191 (444)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  191 (444)
                      ++.++.++.++.+..+.+++..++..+.++++.+++.+++..+.+..|+++.+++.++..+.....+.+|+.||++.++.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  164 (460)
T 3mkt_A           85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV  164 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999998888776677888888989889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHHhhhhhhh----ccCCHHhHHhHHHHHHHH
Q 043161          192 IGFVALVVHIVMLYVFIYV-F---DWGMTGAAIAYDISSWIIAIGQVIYVIGWCKETW----HGLSRAAFIEIWAFVRLS  263 (444)
Q Consensus       192 ~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  263 (444)
                      .++++.++|+++++++++. +   ++|+.|+++++.+++.+..++..++++|+.+...    .+..+.+++..|++++.+
T Consensus       165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  244 (460)
T 3mkt_A          165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG  244 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence            9999999999999999975 3   6899999999999999999988888774322111    112233457799999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 043161          264 LASAVMLCLEIWYMMSIIILTGHLDNAIVAVGSLSVCMNLNGWEAMLFIGINAAISVRVSNELGLGHPRAAKYSVYVTVF  343 (444)
Q Consensus       264 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~a~~~~~s~~~~~~~~~~~~~~~~~~~~  343 (444)
                      .|..+++....+...+++.+++.+|+  .++++|+++.++.++..++..+++++..|.+++++|++|.++.++..+++.+
T Consensus       245 ~p~~~~~~~~~~~~~~~~~~~~~~g~--~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~  322 (460)
T 3mkt_A          245 FPVAAALFFEVTLFAVVALLVAPLGS--TVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM  322 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCTTSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999975  4567999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcCcchhhHHHHHHHHHHhhH
Q 043161          344 QSLLIGVLFMVIILITKDYFAIIFTSSAELQQAVAKLAFLLGITMVLNSVQPVISGVAIGGGWQAMVAYINIGSYYIFGL  423 (444)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  423 (444)
                      +...++++.++++.++++++..+|++|+++.+.+..++++++++.++++++....+.+++.||+|.+++.++.+.|++++
T Consensus       323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i  402 (460)
T 3mkt_A          323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL  402 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999889999


Q ss_pred             HHHHHHHHh----cC-CCceEEecc
Q 043161          424 PLGYLLGYT----AN-LGVTVYLHT  443 (444)
Q Consensus       424 ~l~~~l~~~----~~-~~~~g~~~~  443 (444)
                      |+.+++.+.    ++ +|..|+|.+
T Consensus       403 ~l~~~l~~~~~~~~~~~G~~G~~~a  427 (460)
T 3mkt_A          403 PTGYILGMTNWLTEQPLGAKGFWLG  427 (460)
T ss_dssp             HHHHHHHHHHTSSCCSSHHHHHHHH
T ss_pred             HHHHHHHhhhhccccccCchhHHHH
Confidence            999999998    67 888888865
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00