Citrus Sinensis ID: 043166
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 295 | ||||||
| 359486239 | 352 | PREDICTED: uncharacterized protein LOC10 | 0.979 | 0.821 | 0.768 | 1e-130 | |
| 255570954 | 291 | conserved hypothetical protein [Ricinus | 0.986 | 1.0 | 0.772 | 1e-129 | |
| 225465222 | 284 | PREDICTED: uncharacterized protein LOC10 | 0.959 | 0.996 | 0.741 | 1e-125 | |
| 15217566 | 282 | uncharacterized protein [Arabidopsis tha | 0.938 | 0.982 | 0.729 | 1e-124 | |
| 297843760 | 282 | hypothetical protein ARALYDRAFT_888205 [ | 0.938 | 0.982 | 0.709 | 1e-121 | |
| 3482933 | 967 | Similar to cdc2 protein kinases [Arabido | 0.844 | 0.257 | 0.756 | 1e-121 | |
| 147861795 | 237 | hypothetical protein VITISV_006251 [Viti | 0.786 | 0.978 | 0.844 | 1e-118 | |
| 224129742 | 227 | predicted protein [Populus trichocarpa] | 0.762 | 0.991 | 0.848 | 1e-118 | |
| 147841414 | 293 | hypothetical protein VITISV_037863 [Viti | 0.857 | 0.863 | 0.778 | 1e-118 | |
| 356559185 | 280 | PREDICTED: uncharacterized protein LOC10 | 0.932 | 0.982 | 0.654 | 1e-112 |
| >gi|359486239|ref|XP_003633419.1| PREDICTED: uncharacterized protein LOC100852653 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 226/294 (76%), Positives = 256/294 (87%), Gaps = 5/294 (1%)
Query: 1 MRSKANQALNFKVLLLGIFLAFLLLFVVRSSLSLSKENPSPMSKTPLPKASNVKTNAEAE 60
MR K+ QALN ++LLLGIF +F+LLF +RSSLS +E+ SP+S T LPK SN E
Sbjct: 1 MRPKS-QALNLRLLLLGIFFSFVLLFALRSSLSSPQEDLSPISPTSLPKVSNTI----KE 55
Query: 61 AEAANCSPTCTKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGH 120
+AANCSPTCTKIP SLAQALIHY+TSTITPQQTLKEISV++++L K+PCNFLVFGLGH
Sbjct: 56 GKAANCSPTCTKIPTSLAQALIHYTTSTITPQQTLKEISVTSKILVNKSPCNFLVFGLGH 115
Query: 121 DSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPEC 180
DSLMW LN+GGRTIFLEEDEAWIEQIR+RFP LESYHV YDSKVNQA+NLM+VGKGPEC
Sbjct: 116 DSLMWRELNHGGRTIFLEEDEAWIEQIRQRFPKLESYHVMYDSKVNQADNLMEVGKGPEC 175
Query: 181 TAIGDPKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNRE 240
+GD ++S CQLALKGLP EVYDIKWDLIMVDAPTGYYEEAPGRM AIYTAGMMARNR+
Sbjct: 176 IGVGDIRHSTCQLALKGLPNEVYDIKWDLIMVDAPTGYYEEAPGRMAAIYTAGMMARNRK 235
Query: 241 DGDTDVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLERPFCP 294
DG+TDVFVHDVNR VED FS+AFLC+GYM+KQ GR+RHF IPSHRDG +PFCP
Sbjct: 236 DGETDVFVHDVNRVVEDKFSRAFLCDGYMRKQTGRLRHFRIPSHRDGSAKPFCP 289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255570954|ref|XP_002526428.1| conserved hypothetical protein [Ricinus communis] gi|223534208|gb|EEF35923.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
| >gi|225465222|ref|XP_002266046.1| PREDICTED: uncharacterized protein LOC100260885 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|15217566|ref|NP_172432.1| uncharacterized protein [Arabidopsis thaliana] gi|75127062|sp|Q6NMK1.1|GXM1_ARATH RecName: Full=Glucuronoxylan 4-O-methyltransferase 1 gi|38454180|gb|AAR20784.1| At1g09610 [Arabidopsis thaliana] gi|44681448|gb|AAS47664.1| At1g09610 [Arabidopsis thaliana] gi|332190347|gb|AEE28468.1| uncharacterized protein [Arabidopsis thaliana] gi|408795210|gb|AFU91592.1| glucuronoxylan methyltransferase 1 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|297843760|ref|XP_002889761.1| hypothetical protein ARALYDRAFT_888205 [Arabidopsis lyrata subsp. lyrata] gi|297335603|gb|EFH66020.1| hypothetical protein ARALYDRAFT_888205 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
| >gi|3482933|gb|AAC33218.1| Similar to cdc2 protein kinases [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
| >gi|147861795|emb|CAN78768.1| hypothetical protein VITISV_006251 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|224129742|ref|XP_002328791.1| predicted protein [Populus trichocarpa] gi|222839089|gb|EEE77440.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
| >gi|147841414|emb|CAN66688.1| hypothetical protein VITISV_037863 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
| >gi|356559185|ref|XP_003547881.1| PREDICTED: uncharacterized protein LOC100812805 [Glycine max] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 295 | ||||||
| TAIR|locus:2012350 | 282 | GXM3 "glucuronoxylan methyltra | 0.776 | 0.812 | 0.846 | 9e-109 | |
| TAIR|locus:2012728 | 297 | GXMT1 "glucuronoxylan methyltr | 0.877 | 0.872 | 0.613 | 5.1e-90 | |
| TAIR|locus:2140518 | 290 | GXM2 "glucuronoxylan methyltra | 0.762 | 0.775 | 0.681 | 1.1e-87 | |
| TAIR|locus:2013066 | 295 | AT1G71690 "AT1G71690" [Arabido | 0.864 | 0.864 | 0.597 | 7.6e-80 | |
| TAIR|locus:2019519 | 291 | AT1G67330 "AT1G67330" [Arabido | 0.752 | 0.762 | 0.510 | 7.5e-57 | |
| TAIR|locus:2010449 | 289 | AT1G27930 "AT1G27930" [Arabido | 0.681 | 0.695 | 0.521 | 4.3e-54 | |
| TAIR|locus:2047158 | 329 | AT2G15440 "AT2G15440" [Arabido | 0.766 | 0.686 | 0.354 | 4.2e-40 | |
| TAIR|locus:2074815 | 322 | IRX15 "AT3G50220" [Arabidopsis | 0.752 | 0.689 | 0.365 | 3.5e-36 | |
| TAIR|locus:2155518 | 317 | IRX15-L "AT5G67210" [Arabidops | 0.810 | 0.753 | 0.336 | 1.9e-35 | |
| TAIR|locus:2117378 | 315 | AT4G24910 "AT4G24910" [Arabido | 0.671 | 0.628 | 0.363 | 1.4e-25 |
| TAIR|locus:2012350 GXM3 "glucuronoxylan methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1075 (383.5 bits), Expect = 9.0e-109, P = 9.0e-109
Identities = 198/234 (84%), Positives = 218/234 (93%)
Query: 66 CSPTCTKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMW 125
CS C K+PRSLAQALIHYSTS ITPQQTLKEI+VS+RVL KK+PCNFLVFGLGHDSLMW
Sbjct: 49 CSGACNKLPRSLAQALIHYSTSVITPQQTLKEIAVSSRVLGKKSPCNFLVFGLGHDSLMW 108
Query: 126 STLNYGGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGKGPECTAIGD 185
S+LNYGGRT+FLEEDEAWI+QI+RRFPMLESYHVTYDSKVNQA+NL++VGKGPECTAIGD
Sbjct: 109 SSLNYGGRTVFLEEDEAWIKQIKRRFPMLESYHVTYDSKVNQADNLIEVGKGPECTAIGD 168
Query: 186 PKYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDG-DT 244
P+YSMCQLALKGLPAE+Y+ WDLIMVDAPTGYY+EAPGRMTAIYTAGMMARNR+ G +T
Sbjct: 169 PRYSMCQLALKGLPAEIYETGWDLIMVDAPTGYYDEAPGRMTAIYTAGMMARNRKQGGET 228
Query: 245 DVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLE----RPFCP 294
DVFVHDVNRE+ED FSKAFLCEGYMKKQEGR+RHF IPS+RDG E RPFCP
Sbjct: 229 DVFVHDVNREIEDKFSKAFLCEGYMKKQEGRLRHFIIPSYRDGSESESNRPFCP 282
|
|
| TAIR|locus:2012728 GXMT1 "glucuronoxylan methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2140518 GXM2 "glucuronoxylan methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2013066 AT1G71690 "AT1G71690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2019519 AT1G67330 "AT1G67330" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2010449 AT1G27930 "AT1G27930" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2047158 AT2G15440 "AT2G15440" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2074815 IRX15 "AT3G50220" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2155518 IRX15-L "AT5G67210" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
| TAIR|locus:2117378 AT4G24910 "AT4G24910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 295 | |||
| TIGR01627 | 225 | TIGR01627, A_thal_3515, uncharacterized plant-spec | 1e-101 | |
| pfam04669 | 134 | pfam04669, Polysacc_synt_4, Polysaccharide biosynt | 9e-34 |
| >gnl|CDD|130688 TIGR01627, A_thal_3515, uncharacterized plant-specific domain TIGR01627 | Back alignment and domain information |
|---|
Score = 295 bits (756), Expect = e-101
Identities = 97/226 (42%), Positives = 132/226 (58%), Gaps = 4/226 (1%)
Query: 71 TKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNY 130
T P S A AL HY S KE+ + + VL +++PCN LVFGL H LMWS+LN+
Sbjct: 1 TTFPLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNH 60
Query: 131 GGRTIFLEEDEAWIEQIRRRFPMLESYHVTYDSKVNQAENLMDVGK-GPECTAIGDPK-Y 188
GRT+F+EE++ I + P Y V Y +KV A NL+ + PEC + + +
Sbjct: 61 RGRTVFIEEEKIMIAKAEVNPPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGS 120
Query: 189 SMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDG-DTDVF 247
S C+L L+ LP +VY+ KWD+I+VD P G E PGRM++IYTA ++AR G TDVF
Sbjct: 121 SDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSSIYTAAVLARKGSSGSTTDVF 180
Query: 248 VHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLERPFC 293
VHDV+R VE S FLC+ + + G + HF I + R FC
Sbjct: 181 VHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNA-SRAFC 225
|
This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). Length = 225 |
| >gnl|CDD|218202 pfam04669, Polysacc_synt_4, Polysaccharide biosynthesis | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 295 | |||
| TIGR01627 | 225 | A_thal_3515 uncharacterized plant-specific domain | 100.0 | |
| PF04669 | 190 | Polysacc_synt_4: Polysaccharide biosynthesis; Inte | 100.0 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 94.59 | |
| PLN02823 | 336 | spermine synthase | 94.19 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 93.51 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 93.5 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 93.43 | |
| PLN02476 | 278 | O-methyltransferase | 92.94 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 91.88 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 91.66 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 91.23 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 90.56 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 86.65 | |
| PLN02366 | 308 | spermidine synthase | 86.51 |
| >TIGR01627 A_thal_3515 uncharacterized plant-specific domain TIGR01627 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-122 Score=829.04 Aligned_cols=222 Identities=44% Similarity=0.768 Sum_probs=215.7
Q ss_pred CCCChhHHHhhhhhhcCCCCccccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhh
Q 043166 71 TKIPRSLAQALIHYSTSTITPQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRR 150 (295)
Q Consensus 71 ~~lP~~v~~AlvhYatsn~tpqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~ 150 (295)
+++|++|++|||||||||+|||||.+||+++++||++||||||||||||||||||+||||||||||||||++||++++++
T Consensus 1 t~~p~~~a~AlvhYatsn~t~q~s~~Ei~~~~~VL~~raPCN~LVFGLghdsllW~aLN~gGrTvFLEEd~~~i~~~~~~ 80 (225)
T TIGR01627 1 TTFPLSPADALQHYRASNGPTALMEKELKLLSDVLTRRSPCNILVFGLAHQYLMWSSLNHRGRTVFIEEEKIMIAKAEVN 80 (225)
T ss_pred CCCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHhcCCceEEEeccCcchHHHHHhcCCCeeEEecCCHHHHHHHhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeEEeeecchhhhHHHHHhhcC-CCCCCCCCCC-CCccccccccCCChhhhcccccEEEEeCCCCCCCCCCCchhh
Q 043166 151 FPMLESYHVTYDSKVNQAENLMDVGK-GPECTAIGDP-KYSMCQLALKGLPAEVYDIKWDLIMVDAPTGYYEEAPGRMTA 228 (295)
Q Consensus 151 ~p~leay~V~Y~t~~~ea~~LL~~~r-~~~C~p~~~~-~~S~CkLAl~~LP~evYe~~WDvImVDgP~Gy~~eaPGRM~a 228 (295)
+|+||+|+|+|+|+++||++||+.+| +|+|+|+|+. ++|+|||||+|||+||||++|||||||||+||+||+||||+|
T Consensus 81 ~p~leay~V~Y~t~~~~a~~LL~~~~~~~~C~p~~~~~~~s~C~Lal~~LP~~vYe~~WDvImVDgP~Gy~~eaPGRM~a 160 (225)
T TIGR01627 81 PPNTRIYSVKYHTKVRNAYNLLQHARANPECRPVMNHQGSSDCKLELRDLPQQVYNTKWDVIVVDGPRGDDLETPGRMSS 160 (225)
T ss_pred CCcceEEEEEeehhhhhHHHHHHHhccCCcccCCCCccccCcCccccccCCHHHhcccCcEEEEeCCCCCCCCCCcchhh
Confidence 99999999999999999999999999 5999999964 599999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCC-CceEEEecCChhHHHHHHHhhcccccccccccceeeeEecCCCCCCCCCCC
Q 043166 229 IYTAGMMARNREDG-DTDVFVHDVNREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSHRDGLERPFC 293 (295)
Q Consensus 229 IyTAavmAR~r~~g-~TdVfVHDVdR~VE~~~s~eFLC~~nlv~~~GrL~HF~Ip~~~~~~~~~FC 293 (295)
|||||||||+|++| +||||||||||+|||+|||||||++|||+++||||||+||++++.+ ++||
T Consensus 161 IyTAav~AR~r~~g~~TdVfVHDvdR~VE~~fs~eFLC~~~lv~~~grL~HF~Ip~~~~~~-~~FC 225 (225)
T TIGR01627 161 IYTAAVLARKGSSGSTTDVFVHDVHRTVEKWLSWEFLCQENLVEANGTLWHFRIKRQSNAS-RAFC 225 (225)
T ss_pred HHHHHHHHHhccCCCCceEEEecCCcHHHHHHHHHhcchHHHHhccCceeeEEecCCcCCC-CCCC
Confidence 99999999999874 7999999999999999999999999999999999999999998865 6899
|
This model represents an uncharacterized domain found in both Arabidopsis thaliana (at least 10 copies) and Oryza sativa. Most member proteins have only a short stretch of sequence N-terminal to this domain, but one has a long N-terminal extension that includes a protein kinase domain (pfam00069). |
| >PF04669 Polysacc_synt_4: Polysaccharide biosynthesis; InterPro: IPR021148 This is a eukaryotic family of uncharacterised proteins | Back alignment and domain information |
|---|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 295 | |||
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 96.89 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 90.24 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 89.7 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 87.04 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 86.39 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 86.35 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 85.5 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 84.81 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 82.52 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 81.5 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 80.45 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 80.24 |
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0013 Score=57.58 Aligned_cols=164 Identities=17% Similarity=0.195 Sum_probs=93.1
Q ss_pred ccccHHHHHHHHHHHhhcCCccEEeeccCchhhhhhhhccCCceeEeccChHHHHHHHhhCC--Cc-eeEEeeecchhhh
Q 043166 91 PQQTLKEISVSARVLEKKAPCNFLVFGLGHDSLMWSTLNYGGRTIFLEEDEAWIEQIRRRFP--ML-ESYHVTYDSKVNQ 167 (295)
Q Consensus 91 pqqt~~Ei~~~~~VL~~raPCNfLVFGLg~dslmW~alN~gGrTvFLeEd~~~i~~v~~~~p--~l-eay~V~Y~t~~~e 167 (295)
+.++.++.+.+...++ .|=|.|-+|-|. |-+|.|...+|+-+=+|-|++|++.+++..- ++ +...|.+.. .+
T Consensus 14 ~~v~~~~~~~L~~~l~--~a~~VLEiGtGy-STl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~--gd 88 (202)
T 3cvo_A 14 LTMPPAEAEALRMAYE--EAEVILEYGSGG-STVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVW--TD 88 (202)
T ss_dssp CCSCHHHHHHHHHHHH--HCSEEEEESCSH-HHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEE--CC
T ss_pred ccCCHHHHHHHHHHhh--CCCEEEEECchH-HHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEE--eC
Confidence 3688888888877443 578999999996 6666665558999999999999988875432 11 122333331 11
Q ss_pred HHHHHhhcCCCCCCCCCCCCCccccccccCCChhhh--c--ccccEEEEeCCCCCCCCCCCchhhhhhhhhhhhccCCCC
Q 043166 168 AENLMDVGKGPECTAIGDPKYSMCQLALKGLPAEVY--D--IKWDLIMVDAPTGYYEEAPGRMTAIYTAGMMARNREDGD 243 (295)
Q Consensus 168 a~~LL~~~r~~~C~p~~~~~~S~CkLAl~~LP~evY--e--~~WDvImVDgP~Gy~~eaPGRM~aIyTAavmAR~r~~g~ 243 (295)
|.+.++- ..|.....+ -.+..++..+. + -..|+|+|||..+ ....+- .+-+-|.||.
T Consensus 89 a~~~~~w-----g~p~~~~~~----~~l~~~~~~i~~~~~~~~fDlIfIDg~k~--------~~~~~~--~l~~l~~GG~ 149 (202)
T 3cvo_A 89 IGPTGDW-----GHPVSDAKW----RSYPDYPLAVWRTEGFRHPDVVLVDGRFR--------VGCALA--TAFSITRPVT 149 (202)
T ss_dssp CSSBCGG-----GCBSSSTTG----GGTTHHHHGGGGCTTCCCCSEEEECSSSH--------HHHHHH--HHHHCSSCEE
T ss_pred chhhhcc-----cccccchhh----hhHHHHhhhhhccccCCCCCEEEEeCCCc--------hhHHHH--HHHhcCCCeE
Confidence 1111111 122211110 11122222221 2 4699999999752 233333 2345555553
Q ss_pred ceEEEecC-ChhHHHHHHHhhcccccccccccceeeeEecCC
Q 043166 244 TDVFVHDV-NREVEDNFSKAFLCEGYMKKQEGRIRHFNIPSH 284 (295)
Q Consensus 244 TdVfVHDV-dR~VE~~~s~eFLC~~nlv~~~GrL~HF~Ip~~ 284 (295)
|+++|| .|.-+.. ..+|| .+++..||+-.|++.+.
T Consensus 150 --Iv~DNv~~r~~y~~-v~~~~---~~~~~~~~~a~f~~~p~ 185 (202)
T 3cvo_A 150 --LLFDDYSQRRWQHQ-VEEFL---GAPLMIGRLAAFQVEPQ 185 (202)
T ss_dssp --EEETTGGGCSSGGG-GHHHH---CCCEEETTEEEEEECCC
T ss_pred --EEEeCCcCCcchHH-HHHHH---hHHhhcCceEEEEeCCC
Confidence 467774 5532221 12333 35688999999999654
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 295 | |||
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 93.23 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 91.72 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 90.01 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 89.99 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 89.87 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 88.81 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 86.96 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 86.18 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 85.29 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 83.59 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 81.09 |
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.23 E-value=0.14 Score=43.93 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=39.6
Q ss_pred HHhhcCCccEEeeccCchhhhhhhhccCC-ceeEeccChHHHHHHHhhCC
Q 043166 104 VLEKKAPCNFLVFGLGHDSLMWSTLNYGG-RTIFLEEDEAWIEQIRRRFP 152 (295)
Q Consensus 104 VL~~raPCNfLVFGLg~dslmW~alN~gG-rTvFLeEd~~~i~~v~~~~p 152 (295)
.+....|-|.||.|+|--..++..+.|+. +...+|=||.-|+-.++-+|
T Consensus 67 l~~~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~ 116 (276)
T d1mjfa_ 67 MLAHPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIK 116 (276)
T ss_dssp HHHSSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTC
T ss_pred hhcCCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhh
Confidence 34567899999999999999999998865 56678999999887775444
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|